Query 033991
Match_columns 106
No_of_seqs 101 out of 160
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 14:22:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kwv_A RAD30 homolog B, DNA po 37.6 14 0.00047 21.6 1.3 16 34-49 19-34 (48)
2 2dae_A KIAA0733 protein; mitog 22.8 40 0.0014 21.3 1.7 17 33-49 18-34 (75)
3 1fs1_A SKP2 F-BOX, cyclin A/CD 15.0 88 0.003 16.8 1.8 14 35-48 8-21 (53)
4 2jp3_A FXYD domain-containing 10.9 1.5E+02 0.005 18.3 2.0 16 47-62 22-37 (67)
5 2bnk_A Early protein GP16.7; D 10.9 1.5E+02 0.0051 18.1 2.0 19 29-47 13-31 (67)
6 2jo1_A Phospholemman; FXYD1, N 10.8 1.5E+02 0.0051 18.5 2.0 15 47-61 21-35 (72)
7 1ia9_A Trp-related, transient 10.0 84 0.0029 23.8 0.8 17 17-33 2-18 (280)
8 2j6y_A Phosphoserine phosphata 10.0 3.5E+02 0.012 18.0 3.9 13 41-53 70-82 (111)
9 2x11_B Ephrin-A5; receptor-sig 9.3 57 0.0019 23.6 -0.4 24 51-74 19-42 (177)
10 2zxe_G FXYD10, phospholemman-l 9.3 1.8E+02 0.0062 18.2 2.0 21 47-67 24-45 (74)
No 1
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=37.59 E-value=14 Score=21.59 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=13.4
Q ss_pred CCCCCCChHHHHHHHH
Q 033991 34 DEFSNPPMNVVIELLL 49 (106)
Q Consensus 34 ~~~~~lP~DI~~E~l~ 49 (106)
+-|..||.||.-|.+.
T Consensus 19 eVF~~LP~dIQ~Ells 34 (48)
T 2kwv_A 19 EVFKQLPADIQEEILS 34 (48)
T ss_dssp GGTTTSCHHHHHHHTT
T ss_pred HHHHHCcHHHHHHHHh
Confidence 4688899999999864
No 2
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.82 E-value=40 Score=21.29 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=14.1
Q ss_pred cCCCCCCChHHHHHHHH
Q 033991 33 EDEFSNPPMNVVIELLL 49 (106)
Q Consensus 33 ~~~~~~lP~DI~~E~l~ 49 (106)
.+.|..+|-+||-|++.
T Consensus 18 kQrFPEvPd~VVsqc~~ 34 (75)
T 2dae_A 18 RQKFPEVPEVVVSRCML 34 (75)
T ss_dssp HHHSSSSCHHHHHHHHT
T ss_pred HHhcccCcHHHHHHHHH
Confidence 36788899999999864
No 3
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=14.98 E-value=88 Score=16.78 Aligned_cols=14 Identities=7% Similarity=0.449 Sum_probs=10.8
Q ss_pred CCCCCChHHHHHHH
Q 033991 35 EFSNPPMNVVIELL 48 (106)
Q Consensus 35 ~~~~lP~DI~~E~l 48 (106)
....||-||+.+++
T Consensus 8 ~~~~LP~eil~~I~ 21 (53)
T 1fs1_A 8 SWDSLPDELLLGIF 21 (53)
T ss_dssp -CCSSCHHHHHHHH
T ss_pred CHHHCCHHHHHHHH
Confidence 45679999998875
No 4
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=10.95 E-value=1.5e+02 Score=18.28 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhcC
Q 033991 47 LLLGLVLCMWAALTVP 62 (106)
Q Consensus 47 ~l~~~~l~~~G~v~~a 62 (106)
.+++.++|+.|++..-
T Consensus 22 LifA~vLfi~GI~iil 37 (67)
T 2jp3_A 22 LIFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4677788888876543
No 5
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=10.90 E-value=1.5e+02 Score=18.06 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=13.4
Q ss_pred hhhhcCCCCCCChHHHHHH
Q 033991 29 LKIMEDEFSNPPMNVVIEL 47 (106)
Q Consensus 29 lk~~~~~~~~lP~DI~~E~ 47 (106)
|.+-+++.-.+|.||+=|.
T Consensus 13 LDlYe~SnIrIP~DIIEdl 31 (67)
T 2bnk_A 13 LDLYEQSNIRIPSDIIEDL 31 (67)
T ss_dssp HHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHcCCcCcHHHHHHH
Confidence 3344556677999998775
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=10.79 E-value=1.5e+02 Score=18.51 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhc
Q 033991 47 LLLGLVLCMWAALTV 61 (106)
Q Consensus 47 ~l~~~~l~~~G~v~~ 61 (106)
.+++.++|++|++..
T Consensus 21 LifA~vLfi~GI~ii 35 (72)
T 2jo1_A 21 LVIAGILFILGILIV 35 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 456666777776543
No 7
>1ia9_A Trp-related, transient receptor potential-related protein; alpha/beta, protein kinase like fold, ATP-grAsp fold, transferase; HET: ANP; 2.00A {Mus musculus} SCOP: d.144.1.5 PDB: 1iah_A* 1iaj_A
Probab=10.05 E-value=84 Score=23.81 Aligned_cols=17 Identities=24% Similarity=0.471 Sum_probs=12.6
Q ss_pred HHHHhHHHHHHHhhhhc
Q 033991 17 HAAYSTVQYRGLLKIME 33 (106)
Q Consensus 17 HA~YSa~e~r~~lk~~~ 33 (106)
|-.|||.|-..++|+..
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (280)
T 1ia9_A 2 NYYYSAVERNNLMRLSQ 18 (280)
T ss_dssp -CCCCHHHHHHHHGGGS
T ss_pred CccccHHHHHHHHHHhc
Confidence 55688888888888853
No 8
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=10.01 E-value=3.5e+02 Score=17.97 Aligned_cols=13 Identities=23% Similarity=0.718 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHH
Q 033991 41 MNVVIELLLGLVL 53 (106)
Q Consensus 41 ~DI~~E~l~~~~l 53 (106)
+|+..|+.+|..+
T Consensus 70 ~d~L~Evm~gyGl 82 (111)
T 2j6y_A 70 LDFLIEVMIGYGM 82 (111)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH
Confidence 6677777666543
No 9
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=9.30 E-value=57 Score=23.62 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=11.2
Q ss_pred HHHHHHHHhhcCCCceecCccccc
Q 033991 51 LVLCMWAALTVPGKFLSIHPDSEE 74 (106)
Q Consensus 51 ~~l~~~G~v~~a~~fk~I~~~~e~ 74 (106)
+.+++|+.+..+.+..+|.|++-+
T Consensus 19 ~~~~~~~~~~~~~~r~~VyWNSsN 42 (177)
T 2x11_B 19 LSVLLMGCVAAVADRYAVYWNSSN 42 (177)
T ss_dssp -----------CCSEEEEECSTTC
T ss_pred HHHHHhhheeccCccCceEcCCCC
Confidence 556677777788899999998864
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=9.26 E-value=1.8e+02 Score=18.19 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhc-CCCcee
Q 033991 47 LLLGLVLCMWAALTV-PGKFLS 67 (106)
Q Consensus 47 ~l~~~~l~~~G~v~~-a~~fk~ 67 (106)
.+++.++|++|++.. +++.|-
T Consensus 24 LifA~vLfi~GI~iilS~kcrC 45 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGKCRC 45 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC---
T ss_pred chhHHHHHHHHHHHHHcCcccc
Confidence 567788888887654 444443
Done!