Query 033991
Match_columns 106
No_of_seqs 101 out of 160
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 14:22:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033991.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033991hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fs1a1 a.158.1.1 (A:109-149) 38.0 8.4 0.00061 19.4 1.8 13 36-48 1-13 (41)
2 d2foka2 a.4.5.12 (A:144-286) R 15.9 36 0.0026 22.2 2.0 18 33-50 46-63 (143)
3 d1sfea2 c.55.7.1 (A:12-92) Ada 15.0 25 0.0019 19.6 0.9 11 32-43 70-80 (81)
4 d2c5ra1 a.251.1.1 (A:66-129) E 13.0 55 0.004 18.4 2.0 20 28-47 9-28 (64)
5 d2ovrb1 a.158.1.1 (B:2263-2364 12.5 55 0.004 18.3 2.0 17 34-50 17-33 (102)
6 d1j0pa_ a.138.1.1 (A:) Cytochr 10.8 42 0.0031 20.0 1.1 18 77-94 9-26 (108)
7 d2cona1 g.41.15.1 (A:8-73) RNA 8.6 1.5E+02 0.011 16.4 2.9 33 64-96 33-65 (66)
8 d1yu8x1 a.14.1.1 (X:42-76) Vil 8.1 30 0.0022 17.4 -0.4 20 21-40 2-21 (35)
9 d1z3ix2 c.37.1.19 (X:92-389) R 7.9 1.1E+02 0.0077 20.4 2.4 15 1-15 88-102 (298)
10 d1w53a_ a.186.1.2 (A:) Phospho 7.7 1.2E+02 0.0087 17.7 2.3 13 41-53 70-82 (84)
No 1
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.04 E-value=8.4 Score=19.41 Aligned_cols=13 Identities=8% Similarity=0.478 Sum_probs=10.3
Q ss_pred CCCCChHHHHHHH
Q 033991 36 FSNPPMNVVIELL 48 (106)
Q Consensus 36 ~~~lP~DI~~E~l 48 (106)
|..||-||+.+++
T Consensus 1 f~~LP~eil~~If 13 (41)
T d1fs1a1 1 WDSLPDELLLGIF 13 (41)
T ss_dssp CCSSCHHHHHHHH
T ss_pred CCcCCHHHHHHHH
Confidence 4579999998875
No 2
>d2foka2 a.4.5.12 (A:144-286) Restriction endonuclease FokI, N-terminal (recognition) domain {Flavobacterium okeanokoites [TaxId: 244]}
Probab=15.89 E-value=36 Score=22.21 Aligned_cols=18 Identities=22% Similarity=0.532 Sum_probs=15.1
Q ss_pred cCCCCCCChHHHHHHHHH
Q 033991 33 EDEFSNPPMNVVIELLLG 50 (106)
Q Consensus 33 ~~~~~~lP~DI~~E~l~~ 50 (106)
|..|+++|.||.+-.+.+
T Consensus 46 E~GFts~p~~i~~~~La~ 63 (143)
T d2foka2 46 ESGFTSLPEGILLDTLAN 63 (143)
T ss_dssp STTSCCCCHHHHHHHHHT
T ss_pred ccccccCcHHHHHHHHhh
Confidence 457999999999988765
No 3
>d1sfea2 c.55.7.1 (A:12-92) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=14.99 E-value=25 Score=19.59 Aligned_cols=11 Identities=9% Similarity=0.528 Sum_probs=7.4
Q ss_pred hcCCCCCCChHH
Q 033991 32 MEDEFSNPPMNV 43 (106)
Q Consensus 32 ~~~~~~~lP~DI 43 (106)
...+|. ||+||
T Consensus 70 ~r~~f~-LPLD~ 80 (81)
T d1sfea2 70 RDTPLT-LPLDI 80 (81)
T ss_dssp SSCCCC-SCBCC
T ss_pred CCCCCC-CCccc
Confidence 344664 99996
No 4
>d2c5ra1 a.251.1.1 (A:66-129) Early protein gp16.7 {Bacteriophage phi-29 [TaxId: 10756]}
Probab=12.99 E-value=55 Score=18.38 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=14.3
Q ss_pred HhhhhcCCCCCCChHHHHHH
Q 033991 28 LLKIMEDEFSNPPMNVVIEL 47 (106)
Q Consensus 28 ~lk~~~~~~~~lP~DI~~E~ 47 (106)
.|.+-+++.-.+|.||+=|.
T Consensus 9 vLDlYe~SnIrIP~DIIEdl 28 (64)
T d2c5ra1 9 VLDLYEQSNIRIPSDIIEDL 28 (64)
T ss_dssp HHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHcCCcCcHHHHHHH
Confidence 44444566677999998776
No 5
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.53 E-value=55 Score=18.35 Aligned_cols=17 Identities=24% Similarity=0.125 Sum_probs=13.3
Q ss_pred CCCCCCChHHHHHHHHH
Q 033991 34 DEFSNPPMNVVIELLLG 50 (106)
Q Consensus 34 ~~~~~lP~DI~~E~l~~ 50 (106)
+..+.||.||+.+++.=
T Consensus 17 D~i~~LP~Eil~~Ils~ 33 (102)
T d2ovrb1 17 DFISLLPKELALYVLSF 33 (102)
T ss_dssp STTTSSCHHHHHHHHTT
T ss_pred CChhhCCHHHHHHHHHc
Confidence 45678999999988643
No 6
>d1j0pa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio vulgaris [TaxId: 881]}
Probab=10.81 E-value=42 Score=19.98 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=13.6
Q ss_pred cccCCCCCCceeeccccc
Q 033991 77 MVSLPGNLDFMIFNHRAK 94 (106)
Q Consensus 77 ~d~~~~r~~F~~fnhRg~ 94 (106)
|..+.+.|++..|||-..
T Consensus 9 ~~~~~~~~~~V~F~H~~H 26 (108)
T d1j0pa_ 9 GLKMDKTKQPVVFNHSTH 26 (108)
T ss_dssp CEEECSSSSCEEECGGGC
T ss_pred ceeccCCCCCEEecccce
Confidence 566678888999998543
No 7
>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.62 E-value=1.5e+02 Score=16.40 Aligned_cols=33 Identities=6% Similarity=0.117 Sum_probs=19.9
Q ss_pred CceecCcccccCCcccCCCCCCceeeccccccc
Q 033991 64 KFLSIHPDSEENRMVSLPGNLDFMIFNHRAKVF 96 (106)
Q Consensus 64 ~fk~I~~~~e~~~~d~~~~r~~F~~fnhRg~~l 96 (106)
+++.+..+...+.-..+.-.++|..+|.||...
T Consensus 33 TL~rvsvsvd~~G~~~~h~~~~~k~~n~RG~~y 65 (66)
T d2cona1 33 TLKKVSVTINDDGTLHMHFSRNPKVLNPRGLRY 65 (66)
T ss_dssp CCEEEECBCCSSCCCBCCCCCCCCCCCCCCCCC
T ss_pred ceeEEEEEECCCCcEEEEecCCCceecCCccCC
Confidence 455555544444344455567888889998643
No 8
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=8.10 E-value=30 Score=17.40 Aligned_cols=20 Identities=20% Similarity=0.537 Sum_probs=14.9
Q ss_pred hHHHHHHHhhhhcCCCCCCC
Q 033991 21 STVQYRGLLKIMEDEFSNPP 40 (106)
Q Consensus 21 Sa~e~r~~lk~~~~~~~~lP 40 (106)
|-.+|.+.+..+-++|..||
T Consensus 2 sd~dF~~vfgmsr~eF~~LP 21 (35)
T d1yu8x1 2 SDEDFKAVFGMTRSAFANLP 21 (35)
T ss_dssp CHHHHHHHHSSCHHHHHTSC
T ss_pred CHHHHHHHHCCCHHHHHHCc
Confidence 45677778877777887788
No 9
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=7.90 E-value=1.1e+02 Score=20.44 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=12.3
Q ss_pred CchhhHHHHHHHHHH
Q 033991 1 MGSGFIVGVLGVSIL 15 (106)
Q Consensus 1 M~~s~~l~~vG~llL 15 (106)
||++|.+.+++++.-
T Consensus 88 mGlGKT~qaia~l~~ 102 (298)
T d1z3ix2 88 MGLGKTLQCITLIWT 102 (298)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 899999998887643
No 10
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=7.73 E-value=1.2e+02 Score=17.74 Aligned_cols=13 Identities=23% Similarity=0.718 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHH
Q 033991 41 MNVVIELLLGLVL 53 (106)
Q Consensus 41 ~DI~~E~l~~~~l 53 (106)
+|+.+|+++|.-+
T Consensus 70 fd~LlEVm~gyG~ 82 (84)
T d1w53a_ 70 LDFLIEVMIGYGM 82 (84)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCc
Confidence 7899999988754
Done!