BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033992
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S2Q|A Chain A, The Crystal Structure Of At5g51720 (At-Neet)
pdb|3S2Q|B Chain B, The Crystal Structure Of At5g51720 (At-Neet)
Length = 83
Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 60/66 (90%)
Query: 41 GQGINLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGP 100
G GIN +IRK E+KVVDSVVVTELSK +T YCRCWRSGTFPLCDGSHVKHNKA GDNVGP
Sbjct: 18 GGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHVKHNKANGDNVGP 77
Query: 101 LLLKKQ 106
LLLKKQ
Sbjct: 78 LLLKKQ 83
>pdb|3S2R|A Chain A, Atchloroneet (H87c Mutant)
pdb|3S2R|B Chain B, Atchloroneet (H87c Mutant)
Length = 83
Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/66 (84%), Positives = 59/66 (89%)
Query: 41 GQGINLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGP 100
G GIN +IRK E+KVVDSVVVTELSK +T YCRCWRSGTFPLCDGS VKHNKA GDNVGP
Sbjct: 18 GGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGP 77
Query: 101 LLLKKQ 106
LLLKKQ
Sbjct: 78 LLLKKQ 83
>pdb|3FNV|A Chain A, Crystal Structure Of Miner1: The Redox-Active 2fe-2s
Protein Causative In Wolfram Syndrome 2
pdb|3FNV|B Chain B, Crystal Structure Of Miner1: The Redox-Active 2fe-2s
Protein Causative In Wolfram Syndrome 2
Length = 83
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 48/63 (76%)
Query: 44 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 103
INL I+K KVV+ + + +LS AYCRCWRS TFP CDGSH KHN+ TGDNVGPL+L
Sbjct: 19 INLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLIL 78
Query: 104 KKQ 106
KK+
Sbjct: 79 KKK 81
>pdb|4EZF|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With An
Ala Inserted Between Asp 67 And Lys 68
pdb|4EZF|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With An
Ala Inserted Between Asp 67 And Lys 68
Length = 77
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 44 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 103
INL I+K K+V + + +L YCRCWRS FP CDG+H KHN+ TGDNVGPL++
Sbjct: 13 INLHIQKDNPKIVHAFDMEDLGDAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 72
Query: 104 KKQ 106
KK+
Sbjct: 73 KKK 75
>pdb|4F2C|A Chain A, The Crystal Structure Of A Human Mitoneet Double Mutant In
Which Gly 66 Are Asp 67 Are Both Replaced With Ala
Residues
pdb|4F2C|B Chain B, The Crystal Structure Of A Human Mitoneet Double Mutant In
Which Gly 66 Are Asp 67 Are Both Replaced With Ala
Residues
Length = 76
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 44 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 103
INL I+K K+V + + +L+ YCRCWRS FP CDG+H KHN+ TGDNVGPL++
Sbjct: 13 INLHIQKDNPKIVHAFDMEDLAAK-AVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 71
Query: 104 KKQ 106
KK+
Sbjct: 72 KKK 74
>pdb|2QD0|A Chain A, Crystal Structure Of Mitoneet
pdb|2QD0|B Chain B, Crystal Structure Of Mitoneet
Length = 81
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 44 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 103
INL I+K K+V + + +L YCRCWRS FP CDG+H KHN+ TGDNVGPL++
Sbjct: 16 INLHIQKDNPKIVHAFDMEDLGDK-AVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 74
Query: 104 KKQ 106
KK+
Sbjct: 75 KKK 77
>pdb|2R13|A Chain A, Crystal Structure Of Human Mitoneet Reveals A Novel [2fe-
2s] Cluster Coordination
Length = 79
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 44 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 103
INL I+K K+V + + +L YCRCWRS FP CDG+H KHN+ TGDNVGPL++
Sbjct: 16 INLHIQKDNPKIVHAFDMEDLGDK-AVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 74
Query: 104 KKQ 106
KK+
Sbjct: 75 KKK 77
>pdb|3EW0|A Chain A, The Novel 2fe-2s Outer Mitochondrial Protein Mitoneet
Displays Conformational Flexibility In Its N-Terminal
Cytoplasmic Tethering Domain
pdb|3EW0|B Chain B, The Novel 2fe-2s Outer Mitochondrial Protein Mitoneet
Displays Conformational Flexibility In Its N-Terminal
Cytoplasmic Tethering Domain
Length = 80
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 44 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 103
INL I+K K+V + + +L YCRCWRS FP CDG+H KHN+ TGDNVGPL++
Sbjct: 17 INLHIQKDNPKIVHAFDMEDLGDK-AVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 75
Query: 104 KKQ 106
KK+
Sbjct: 76 KKK 78
>pdb|2QH7|A Chain A, Mitoneet Is A Uniquely Folded 2fe-2s Outer Mitochondrial
Membrane Protein Stabilized By Pioglitazone
pdb|2QH7|B Chain B, Mitoneet Is A Uniquely Folded 2fe-2s Outer Mitochondrial
Membrane Protein Stabilized By Pioglitazone
Length = 76
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 44 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 103
INL I+K K+V + + +L YCRCWRS FP CDG+H KHN+ TGDNVGPL++
Sbjct: 13 INLHIQKDNPKIVHAFDMEDLGDK-AVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 71
Query: 104 KKQ 106
KK+
Sbjct: 72 KKK 74
>pdb|3REE|A Chain A, Crystal Structure Of Mitoneet
Length = 84
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 44 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 103
INL I+K K+V + + +L YCRCWRS FP CDG+H KHN+ TGDNVGPL++
Sbjct: 14 INLHIQKDNPKIVHAFDMEDLGDK-AVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 72
Query: 104 KKQ 106
KK+
Sbjct: 73 KKK 75
>pdb|4F1E|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|C Chain C, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|D Chain D, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|E Chain E, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|F Chain F, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|G Chain G, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|H Chain H, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|I Chain I, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|J Chain J, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|K Chain K, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|L Chain L, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|M Chain M, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|N Chain N, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|O Chain O, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|P Chain P, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|Q Chain Q, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|R Chain R, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
Length = 76
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 44 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 103
INL I+K K+V + + +L YCRCWRS FP CDG+H KHN+ TGDNVGPL++
Sbjct: 13 INLHIQKDNPKIVHAFDMEDLGGK-AVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 71
Query: 104 KKQ 106
KK+
Sbjct: 72 KKK 74
>pdb|4F28|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With Met
62 Replaced By A Gly
pdb|4F28|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With Met
62 Replaced By A Gly
Length = 76
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 44 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 103
INL I+K K+V + +L YCRCWRS FP CDG+H KHN+ TGDNVGPL++
Sbjct: 13 INLHIQKDNPKIVHAFDGEDLGDK-AVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 71
Query: 104 KKQ 106
KK+
Sbjct: 72 KKK 74
>pdb|3LPQ|A Chain A, Human Mitoneet With 2fe-2s Coordinating Ligand His 87
Replaced With Cys
pdb|3LPQ|B Chain B, Human Mitoneet With 2fe-2s Coordinating Ligand His 87
Replaced With Cys
Length = 79
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 44 INLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 103
INL I+K K+V + + +L YCRCWRS FP CDG+ KHN+ TGDNVGPL++
Sbjct: 17 INLHIQKDNPKIVHAFDMEDLGDK-AVYCRCWRSKKFPFCDGACTKHNEETGDNVGPLII 75
Query: 104 KKQ 106
KK+
Sbjct: 76 KKK 78
>pdb|3TBO|A Chain A, Crystal Structure Of A Type 3 Cdgsh Iron-Sulfur Protein
Length = 60
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 72 CRCWRSGTFPLCDGSHVK 89
CRC SG+ P CDG+H K
Sbjct: 25 CRCGHSGSKPHCDGTHAK 42
>pdb|3TBN|A Chain A, Crystal Structure Of A Miner2 Homolog: A Type 6 Cdgsh
Iron-Sulfur Protein
Length = 87
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 56 VDSVVVTELSKPLTA-------YCRCWRSGTFPLCDGSH 87
D V+ + P+T +C C RS P CDGSH
Sbjct: 10 TDPVIAQKAPYPVTVEAGKTYHWCACGRSKAQPFCDGSH 48
>pdb|1NZD|A Chain A, T4 Phage Bgt-D100a Mutant In Complex With Udp-Glucose:
Form I
pdb|1NZF|A Chain A, T4 Phage Bgt-D100a Mutant In Complex With Udp-Glucose:
Form Ii
Length = 351
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 42 QGINLDIRKTEEKVVDSVVVTE 63
QGINLDI K K VD+V+ E
Sbjct: 137 QGINLDIAKAAHKKVDNVIEFE 158
>pdb|1QKJ|A Chain A, T4 Phage B-Glucosyltransferase, Substrate Binding And
Proposed Catalytic Mechanism
pdb|1C3J|A Chain A, T4 Phage Beta-Glucosyltransferase: Substrate Binding And
Proposed Catalytic Mechanism
pdb|1JEJ|A Chain A, T4 Phage Apo Bgt
pdb|1JG6|A Chain A, T4 Phage Bgt In Complex With Udp
pdb|1JG7|A Chain A, T4 Phage Bgt In Complex With Udp And Mn2+
pdb|1JIU|A Chain A, T4 Phage Bgt In Complex With Mg2+ : Form I
pdb|1JIV|A Chain A, T4 Phage Bgt In Complex With Mg2+ : Form Ii
pdb|1JIX|A Chain A, T4 Phage Bgt In Complex With Ca2+
pdb|1IXY|A Chain A, Ternary Complex Of T4 Phage Bgt With Udp And A 13 Mer Dna
Duplex
pdb|1IXY|B Chain B, Ternary Complex Of T4 Phage Bgt With Udp And A 13 Mer Dna
Duplex
pdb|1M5R|A Chain A, Ternary Complex Of T4 Phage Bgt With Udp And A 13 Mer Dna
Duplex
pdb|1M5R|B Chain B, Ternary Complex Of T4 Phage Bgt With Udp And A 13 Mer Dna
Duplex
pdb|1NVK|A Chain A, T4 Phage Bgt In Complex With Udp And A Mn2+ Ion At 1.8 A
Resolution
pdb|1J39|A Chain A, Crystal Structure Of T4 Phage Bgt In Complex With Its
Udp-Glucose Substrate
pdb|1SXP|A Chain A, Bgt In Complex With A 13mer Dna Containing A Central A:g
Mismatch
pdb|1SXP|B Chain B, Bgt In Complex With A 13mer Dna Containing A Central A:g
Mismatch
pdb|1SXQ|A Chain A, Bgt In Complex With A 13mer Dna Containing A Central C:g
Base Pair And Udp
pdb|1SXQ|B Chain B, Bgt In Complex With A 13mer Dna Containing A Central C:g
Base Pair And Udp
pdb|1BGT|A Chain A, Crystal Structure Of The Dna Modifying Enzyme Beta-
Glucosyltransferase In The Presence And Absence Of The
Substrate Uridine Diphosphoglucose
pdb|1BGU|A Chain A, Crystal Structure Of The Dna Modifying Enzyme Beta-
Glucosyltransferase In The Presence And Absence Of The
Substrate Uridine Diphosphoglucose
pdb|2BGT|A Chain A, Crystal Structure Of The Dna Modifying Enzyme Beta-
Glucosyltransferase In The Presence And Absence Of The
Substrate Uridine Diphosphoglucose
pdb|2BGU|A Chain A, Crystal Structure Of The Dna Modifying Enzyme Beta-
Glucosyltransferase In The Presence And Absence Of The
Substrate Uridine Diphosphoglucose
Length = 351
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 42 QGINLDIRKTEEKVVDSVVVTE 63
QGINLDI K K VD+V+ E
Sbjct: 137 QGINLDIAKAAHKKVDNVIEFE 158
>pdb|3TBM|A Chain A, Crystal Structure Of A Type 4 Cdgsh Iron-Sulfur Protein.
pdb|3TBM|B Chain B, Crystal Structure Of A Type 4 Cdgsh Iron-Sulfur Protein
Length = 69
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 72 CRCWRSGTFPLCDGSHVK 89
CRC S P CDGSH +
Sbjct: 44 CRCGHSLNKPFCDGSHKR 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,602,128
Number of Sequences: 62578
Number of extensions: 79173
Number of successful extensions: 151
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 19
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)