Query 033992
Match_columns 106
No_of_seqs 130 out of 553
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 08:34:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3461 CDGSH-type Zn-finger c 99.9 1.5E-26 3.2E-31 168.3 6.1 65 41-106 66-130 (132)
2 COG3369 Zinc finger domain con 99.6 9.8E-17 2.1E-21 108.5 3.8 28 66-93 28-55 (78)
3 smart00704 ZnF_CDGSH CDGSH-typ 99.6 2.6E-16 5.5E-21 93.5 3.9 29 65-93 10-38 (38)
4 PF09360 zf-CDGSH: Iron-bindin 99.6 4.8E-16 1E-20 92.2 1.0 25 64-88 14-38 (38)
5 KOG4605 Uncharacterized conser 99.3 7.6E-12 1.6E-16 91.1 5.5 59 43-104 30-90 (129)
6 KOG4605 Uncharacterized conser 98.3 5.4E-07 1.2E-11 65.9 3.2 39 57-95 85-123 (129)
7 PRK02645 ppnK inorganic polyph 54.3 21 0.00045 28.8 4.0 37 3-42 181-217 (305)
8 PRK14077 pnk inorganic polypho 49.3 24 0.00052 28.5 3.6 37 3-42 179-215 (287)
9 PRK04761 ppnK inorganic polyph 48.9 41 0.00088 26.8 4.8 52 3-57 136-189 (246)
10 PRK01185 ppnK inorganic polyph 48.7 25 0.00054 28.2 3.6 37 3-42 160-196 (271)
11 PRK01911 ppnK inorganic polyph 47.7 24 0.00052 28.5 3.4 37 3-42 178-214 (292)
12 PRK03372 ppnK inorganic polyph 46.9 27 0.00057 28.6 3.6 47 3-52 187-235 (306)
13 PRK02155 ppnK NAD(+)/NADH kina 44.6 35 0.00076 27.4 3.9 37 3-42 178-214 (291)
14 COG0061 nadF NAD kinase [Coenz 43.0 60 0.0013 25.8 5.0 37 3-42 168-204 (281)
15 PRK02231 ppnK inorganic polyph 42.2 33 0.00072 27.5 3.4 37 3-42 158-194 (272)
16 PRK04539 ppnK inorganic polyph 42.0 32 0.0007 27.8 3.3 37 3-42 183-219 (296)
17 PLN02929 NADH kinase 40.0 34 0.00073 28.1 3.2 79 3-98 198-282 (301)
18 PRK02649 ppnK inorganic polyph 37.6 42 0.0009 27.4 3.3 36 3-41 183-218 (305)
19 PRK03708 ppnK inorganic polyph 36.1 52 0.0011 26.2 3.7 37 3-42 167-203 (277)
20 PRK01231 ppnK inorganic polyph 35.4 58 0.0012 26.3 3.8 37 3-42 177-213 (295)
21 KOG3505 Mitochondrial/chloropl 35.1 17 0.00038 23.3 0.6 23 2-24 8-30 (55)
22 PRK03378 ppnK inorganic polyph 33.5 57 0.0012 26.3 3.5 37 3-42 178-214 (292)
23 PRK03501 ppnK inorganic polyph 31.1 57 0.0012 26.1 3.1 38 3-43 151-188 (264)
24 PRK04885 ppnK inorganic polyph 29.9 64 0.0014 25.7 3.2 37 3-42 150-186 (265)
25 PLN02935 Bifunctional NADH kin 28.3 66 0.0014 28.6 3.2 36 3-41 382-417 (508)
26 PRK14076 pnk inorganic polypho 27.4 74 0.0016 27.9 3.4 37 3-42 463-499 (569)
27 PRK14075 pnk inorganic polypho 25.5 71 0.0015 25.1 2.7 37 3-42 148-184 (256)
28 PF01513 NAD_kinase: ATP-NAD k 24.9 41 0.00089 26.4 1.3 36 3-41 193-228 (285)
29 PF14354 Lar_restr_allev: Rest 24.6 31 0.00067 20.8 0.4 17 80-97 6-23 (61)
30 PF05798 Phage_FRD3: Bacteriop 23.3 31 0.00067 23.3 0.3 9 81-89 56-64 (75)
31 PF09443 CFC: Cripto_Frl-1_Cry 21.2 37 0.0008 20.0 0.3 11 68-78 13-23 (36)
No 1
>KOG3461 consensus CDGSH-type Zn-finger containing protein [General function prediction only]
Probab=99.93 E-value=1.5e-26 Score=168.26 Aligned_cols=65 Identities=60% Similarity=1.089 Sum_probs=61.2
Q ss_pred cccccceEeCCCCeeEeceeeeecCCCeEEEEEecccCCCccCccccccCcccCCCccCceeeeeC
Q 033992 41 GQGINLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 106 (106)
Q Consensus 41 P~~~n~~I~~~~~kvVd~~~~~~~~~~~~~lCrCg~S~~~PfCDgsH~~~~~~~g~~~~p~~~~~~ 106 (106)
-.++|.+|++++.|+||.+++|++++ +.+|||||+|+++|||||||.++|.++|||||||+++||
T Consensus 66 ~a~iN~hIqkd~pKIVd~~d~eDl~~-ka~yCrCWrs~kfP~CDGsh~KhNk~tgdNvgpliikk~ 130 (132)
T KOG3461|consen 66 KARINLHIQKDNPKIVDAFDMEDLGD-KAAYCRCWRSKKFPLCDGSHGKHNKETGDNVGPLIIKKK 130 (132)
T ss_pred CccccceeecCCCceeEEEehhhhcc-cceEEEeeccCCcccccCcccccccccccccccceeeec
Confidence 46999999999999999999999985 556999999999999999999999999999999999986
No 2
>COG3369 Zinc finger domain containing protein (CDGSH-type) [Function unknown]
Probab=99.65 E-value=9.8e-17 Score=108.45 Aligned_cols=28 Identities=39% Similarity=0.740 Sum_probs=26.2
Q ss_pred CCeEEEEEecccCCCccCccccccCccc
Q 033992 66 KPLTAYCRCWRSGTFPLCDGSHVKHNKA 93 (106)
Q Consensus 66 ~~~~~lCrCg~S~~~PfCDgsH~~~~~~ 93 (106)
+.+++|||||.|.|||||||+|.+++|+
T Consensus 28 ~~~~~LCrCG~S~NKPfCDGtH~k~gf~ 55 (78)
T COG3369 28 DEQAALCRCGHSENKPFCDGTHKKTGFD 55 (78)
T ss_pred ceEEEEEeccCcCCCCccCCcccccccc
Confidence 4689999999999999999999999995
No 3
>smart00704 ZnF_CDGSH CDGSH-type zinc finger. Function unknown.
Probab=99.63 E-value=2.6e-16 Score=93.54 Aligned_cols=29 Identities=55% Similarity=1.017 Sum_probs=25.7
Q ss_pred CCCeEEEEEecccCCCccCccccccCccc
Q 033992 65 SKPLTAYCRCWRSGTFPLCDGSHVKHNKA 93 (106)
Q Consensus 65 ~~~~~~lCrCg~S~~~PfCDgsH~~~~~~ 93 (106)
+...++||+||+|+|+|||||||...+++
T Consensus 10 ~~~~~~lC~C~~S~~~PfCDGsH~~~~~~ 38 (38)
T smart00704 10 KREKYALCRCGRSKNFPYCDGSHKKHNEQ 38 (38)
T ss_pred CCCEEEEeeCCCCCCCCccCCcccCcCcC
Confidence 34689999999999999999999988763
No 4
>PF09360 zf-CDGSH: Iron-binding zinc finger CDGSH type; InterPro: IPR018967 This entry represents iron-sulphur domain containing proteins that have a CDGSH sequence motif (although the Ser residue can also be an Ala or Thr), and is found in proteins from a wide range of organisms with the exception of fungi. The CDGSH-type domain binds a redox-active pH-labile 2Fe-2S cluster. The conserved sequence C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H is a defining feature of this family []. CDGSH-type domains are found in mitoNEET, an iron-containing integral protein of the outer mitochondrian membrane (OMM). MitoNEET forms a dimeric structure with a NEET fold, and contains two domains: a beta-cap region and a cluster-binding domain that coordinated two acid-labile 2Fe-2S clusters (one bound to each protomer) []. The CDGSH iron-sulphur domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by a more N-terminal domain found in higher vertebrates, (IPR019610 from INTERPRO) [, ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM. ; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 3TBO_A 3FNV_B 3TBM_B 3TBN_A 3S2R_A 3S2Q_A 3LPQ_A 2QH7_A 3EW0_A 2R13_A ....
Probab=99.57 E-value=4.8e-16 Score=92.19 Aligned_cols=25 Identities=52% Similarity=0.914 Sum_probs=17.4
Q ss_pred cCCCeEEEEEecccCCCccCccccc
Q 033992 64 LSKPLTAYCRCWRSGTFPLCDGSHV 88 (106)
Q Consensus 64 ~~~~~~~lCrCg~S~~~PfCDgsH~ 88 (106)
+++..++|||||+|+|+|||||||+
T Consensus 14 ~~~~~~~lC~Cg~S~~~PfCDGsH~ 38 (38)
T PF09360_consen 14 LEKGTYALCRCGKSKNKPFCDGSHK 38 (38)
T ss_dssp CSTSEEEE-SSS--TTTTB--SHHH
T ss_pred ecCCEEEEecCCCCCCCCccCCcCC
Confidence 3457899999999999999999995
No 5
>KOG4605 consensus Uncharacterized conserved protein containing CDGSH-type Zn-finger [Function unknown]
Probab=99.27 E-value=7.6e-12 Score=91.10 Aligned_cols=59 Identities=24% Similarity=0.380 Sum_probs=44.4
Q ss_pred cccceEeCCCCeeEec--eeeeecCCCeEEEEEecccCCCccCccccccCcccCCCccCceeee
Q 033992 43 GINLDIRKTEEKVVDS--VVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLK 104 (106)
Q Consensus 43 ~~n~~I~~~~~kvVd~--~~~~~~~~~~~~lCrCg~S~~~PfCDgsH~~~~~~~g~~~~p~~~~ 104 (106)
..........+++.+. +.++....+.|.||-||+|+.+|||||||+..+ -.++.||-++
T Consensus 30 ~~ta~~lp~~g~v~~k~p~KVhL~a~KtY~WCsCG~S~sQPfCDGsHk~~~---~tklrPvrFk 90 (129)
T KOG4605|consen 30 AQTAPRLPARGVVALKTPIKVHLVAGKTYRWCSCGRSKSQPFCDGSHKFQG---RTKLRPVRFK 90 (129)
T ss_pred cccccccccCceecccCceEEEEecCCEEEEEeccccCCCccccccccccc---cccccceEeE
Confidence 4444555666666653 355666678999999999999999999999765 4568888775
No 6
>KOG4605 consensus Uncharacterized conserved protein containing CDGSH-type Zn-finger [Function unknown]
Probab=98.30 E-value=5.4e-07 Score=65.87 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=30.0
Q ss_pred eceeeeecCCCeEEEEEecccCCCccCccccccCcccCC
Q 033992 57 DSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATG 95 (106)
Q Consensus 57 d~~~~~~~~~~~~~lCrCg~S~~~PfCDgsH~~~~~~~g 95 (106)
.++.+...+...|+||.|.++.+.|||||.|+....+.-
T Consensus 85 rPvrFkvektg~~wlCnCKqT~~rP~CDGtH~~~~~q~a 123 (129)
T KOG4605|consen 85 RPVRFKVEKTGMVWLCNCKQTQRRPYCDGTHRSERVQKA 123 (129)
T ss_pred cceEeEecccceEEeecccccCCCCccCCcccccccchh
Confidence 334454444568999999999999999999997765543
No 7
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.29 E-value=21 Score=28.85 Aligned_cols=37 Identities=5% Similarity=0.108 Sum_probs=27.0
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCcc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEGQ 42 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP~ 42 (106)
.|++++||+|+|.+ .+-++| .-.|.-+-+.+.|=.|.
T Consensus 181 GlIVsTPtGSTAYs--lSAGGP-Iv~P~~~~~~vtPi~ph 217 (305)
T PRK02645 181 GLIVSTPTGSTAYT--MAAGGP-ILHPGIDAIIVTPICPM 217 (305)
T ss_pred EEEEecCCChhhhh--hhcCCc-ccCCCCCeEEEEecCcc
Confidence 47899999999966 444554 55666677888887874
No 8
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.31 E-value=24 Score=28.46 Aligned_cols=37 Identities=5% Similarity=0.191 Sum_probs=26.9
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCcc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEGQ 42 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP~ 42 (106)
.|++|+||+|+|.++ +-++| .-.|.-+-+.+.|=.|.
T Consensus 179 GlIVSTPTGSTAYsl--SAGGP-Iv~P~~~~~~ltPI~Ph 215 (287)
T PRK14077 179 GVIVATPAGSTAYNM--SANGP-IIYPLSQVFILTPVCSH 215 (287)
T ss_pred EEEEeCCCchhHhHh--hcCCc-ccCCCCCeEEEEecccc
Confidence 478999999999663 44554 55566677888887774
No 9
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=48.86 E-value=41 Score=26.76 Aligned_cols=52 Identities=6% Similarity=0.012 Sum_probs=34.1
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCcccc--cceEeCCCCeeEe
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEGQGI--NLDIRKTEEKVVD 57 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP~~~--n~~I~~~~~kvVd 57 (106)
.|++++||+|+|.. .+-++| .-.|.-+-+.+.+=.|.+. ...|+..+...+.
T Consensus 136 GlIVSTPtGSTAY~--lSAGGP-Iv~P~~~~~~itPI~P~~~~~~RplVlp~~~~I~ 189 (246)
T PRK04761 136 GVLVATPAGSTAYN--LSAHGP-ILPLGSNLLALTPISPFRPRRWRGALLPNSATVR 189 (246)
T ss_pred eEEEeCCcCHHHHH--hhCCCc-ccCCCCCeEEEEeecccCCcCCccEEECCCCEEE
Confidence 47899999999966 344444 6667778888888888642 2334444444443
No 10
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.74 E-value=25 Score=28.19 Aligned_cols=37 Identities=5% Similarity=0.121 Sum_probs=27.5
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCcc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEGQ 42 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP~ 42 (106)
.|++++||+|+|.+ -+-++| .-.|.-+-+.+.|=.|.
T Consensus 160 GlIVsTPTGSTAYs--lSAGGP-Iv~P~~~~~~ltPI~Ph 196 (271)
T PRK01185 160 GVIVATPTGSTSYS--SSAGGP-ILLPNLEGMVISYIAPY 196 (271)
T ss_pred EEEEeCCCchHHHH--hhCCCc-eeCCCCCeEEEEecccC
Confidence 47899999999865 444554 55667678888888884
No 11
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.74 E-value=24 Score=28.55 Aligned_cols=37 Identities=8% Similarity=0.259 Sum_probs=27.9
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCcc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEGQ 42 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP~ 42 (106)
.|++++||+|+|.++ +-++| .-.|.-+.+.+.|=.|.
T Consensus 178 GlIVsTPTGSTAYsl--SAGGP-Iv~P~~~~~~ltPI~Ph 214 (292)
T PRK01911 178 GLIVATPTGSTGYSL--SCGGP-IIVPDAKSFVITPIAPH 214 (292)
T ss_pred eeEECCCCcHHHHHh--hCCCc-ccCCCCCEEEEEecccC
Confidence 478999999999664 44454 56677778888888884
No 12
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.91 E-value=27 Score=28.56 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=31.6
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCcc--cccceEeCCC
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEGQ--GINLDIRKTE 52 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP~--~~n~~I~~~~ 52 (106)
.|++++||+|+|.++ +-++| .-.|.-+-+.+.|=-|. ...+-|...+
T Consensus 187 GlIVsTPTGSTAYsl--SAGGP-Iv~P~~~~~~itPI~Ph~l~~RplVv~~~ 235 (306)
T PRK03372 187 GVLVSTPTGSTAYAF--SAGGP-VVWPDLEALLVVPLNAHALFARPLVVSPT 235 (306)
T ss_pred EEEEeCCCchHHHHh--hcCCc-ccCCCCCeEEEEecccccCCCCCeEECCC
Confidence 478999999999663 44444 66667788888888773 4444444333
No 13
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=44.62 E-value=35 Score=27.43 Aligned_cols=37 Identities=8% Similarity=0.165 Sum_probs=26.3
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCcc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEGQ 42 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP~ 42 (106)
.|++++||+|+|.++ +-++| .--|.-+-+.+.|=.|.
T Consensus 178 GlIVsTPtGSTAYsl--SaGGP-Iv~p~~~~~~ltPI~p~ 214 (291)
T PRK02155 178 GLIVATPTGSTAYAL--SAGGP-ILHPQLPGWVLVPIAPH 214 (291)
T ss_pred eEEEECCCchhhhhh--hcCCc-ccCCCCCeEEEEecCcC
Confidence 478999999999764 34444 55556667777777774
No 14
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=42.98 E-value=60 Score=25.77 Aligned_cols=37 Identities=5% Similarity=0.082 Sum_probs=27.5
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCcc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEGQ 42 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP~ 42 (106)
.|+++|||+|+|.+ .+-++| .--|+-..|.+.|--|.
T Consensus 168 GliVsTPTGSTAY~--lSAGGP-Iv~P~l~ai~ltpi~p~ 204 (281)
T COG0061 168 GLIVSTPTGSTAYN--LSAGGP-ILHPGLDAIQLTPICPH 204 (281)
T ss_pred EEEEEcCCcHHHHh--hhcCCC-ccCCCCCeEEEeecCCC
Confidence 37899999999865 444454 66777778888888874
No 15
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.23 E-value=33 Score=27.54 Aligned_cols=37 Identities=11% Similarity=0.166 Sum_probs=26.2
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCcc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEGQ 42 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP~ 42 (106)
.|++++||+|+|.. .+-++| .-.|.-+.+.+.|=-|.
T Consensus 158 GlIVsTPtGSTAY~--lSAGGP-Iv~P~~~~~~itPI~Ph 194 (272)
T PRK02231 158 GLIISTPTGSTAYS--LSAGGP-ILTPNLNAIALVPMFPH 194 (272)
T ss_pred eEEEECCCcHHHHH--hhCCCc-eeCCCCCeEEEEecccc
Confidence 47899999999966 444554 55566667777777773
No 16
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.96 E-value=32 Score=27.85 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=27.8
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCcc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEGQ 42 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP~ 42 (106)
.|++++||+|+|.+ -+-++| .-.|.-+-+.+.|=-|.
T Consensus 183 GlIVsTPTGSTAYs--lSAGGP-Iv~P~~~~~~itPI~Ph 219 (296)
T PRK04539 183 GLIVSTPTGSTAYS--LAAGGP-IMQAGLHAFTLVPICPQ 219 (296)
T ss_pred eEEEECCCcHHHHH--hhCCCc-eeCCCCCeEEEEecCcC
Confidence 47899999999865 444555 66667778888888883
No 17
>PLN02929 NADH kinase
Probab=39.99 E-value=34 Score=28.15 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=44.7
Q ss_pred ccccccCCCccceEEecCCCCC--CccCCCCceEEEecCCcccccceE---eCCCCeeEeceeeeecCCCeEEEEEeccc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAA--GVVTARPRRVVVVRAEGQGINLDI---RKTEEKVVDSVVVTELSKPLTAYCRCWRS 77 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~--~~~~~~~~ri~v~~~GP~~~n~~I---~~~~~kvVd~~~~~~~~~~~~~lCrCg~S 77 (106)
.|++++||+|+|..++ -+++ ..-.|.-+-+.+.|=-|..-+..+ +......+. + .| .+
T Consensus 198 GliVsTpTGSTAY~lS--AGG~i~Piv~P~l~~~vltPI~Ph~~~r~l~~~vv~~~~~i~------i-----~~----~~ 260 (301)
T PLN02929 198 GLRVSTAAGSTAAMLS--AGGFPMPLLSRDLQYMVREPISPGHPPKSLMHGFYKPGQHMQ------V-----RW----NS 260 (301)
T ss_pred cEEEeCCccHHHHHHh--cCCCCCCCCCcccceEEEEeeCCCCCCCCccccEECCCCeEE------E-----EE----eC
Confidence 4788999999997765 3341 234456666777766664322222 122222222 1 11 11
Q ss_pred -CCCccCccccccCcccCCCcc
Q 033992 78 -GTFPLCDGSHVKHNKATGDNV 98 (106)
Q Consensus 78 -~~~PfCDgsH~~~~~~~g~~~ 98 (106)
.-.=++||.|..+..+.|+.+
T Consensus 261 ~~~~i~iDG~~~~~~l~~gd~i 282 (301)
T PLN02929 261 RKGTIYIDGSHVMHSIKLGDTI 282 (301)
T ss_pred CCEEEEECCCcceEecCCCCEE
Confidence 223489999988877778764
No 18
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.61 E-value=42 Score=27.37 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=25.6
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEG 41 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP 41 (106)
.|++++||+|+|.++ +-++| .-.|.-+.+.+.|=-|
T Consensus 183 GlIVsTPTGSTAYsl--SAGGP-Iv~P~~~~~~itPI~P 218 (305)
T PRK02649 183 GVILSTPTGSTAYSL--SAGGP-VITPDVPVLQLTPICP 218 (305)
T ss_pred eEEEeCCCcHHHHHh--hCCCc-ccCCCCCeEEEEecCc
Confidence 478999999999764 34444 5555667777777777
No 19
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.12 E-value=52 Score=26.25 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=27.2
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCcc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEGQ 42 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP~ 42 (106)
.|++++||+|+|.. .+-++| .--|.-.-+.+.|=.|.
T Consensus 167 GvIvsTptGSTAY~--lSaGGp-Iv~p~~~~~~vtPi~p~ 203 (277)
T PRK03708 167 GLIISTPTGSTAYA--MSAGGP-FVDPRLDAILIAPLCPF 203 (277)
T ss_pred EEEEeCCCchHHHH--hhCCCc-ccCCCCCeEEEEecccc
Confidence 47899999999865 445555 55566677888888884
No 20
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.35 E-value=58 Score=26.30 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=26.9
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCcc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEGQ 42 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP~ 42 (106)
.|++++||+|+|.. .+-++| .-.|.-.-+.+.|=-|.
T Consensus 177 GlivsTptGSTAY~--lSAGGp-Iv~p~~~~~~itPI~ph 213 (295)
T PRK01231 177 GLIVSTPTGSTAYA--LSGGGP-IMHPKLDAIVLVPMFPH 213 (295)
T ss_pred eEEEeCCCCchhhh--hhcCCc-eecCCCCeEEEEecCCC
Confidence 47899999999865 444554 55567777888887774
No 21
>KOG3505 consensus Mitochondrial/chloroplast ribosomal protein L33-like [Translation, ribosomal structure and biogenesis]
Probab=35.07 E-value=17 Score=23.27 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=17.8
Q ss_pred cccccccCCCccceEEecCCCCC
Q 033992 2 ASIAMSCSAAVPGFRFNKSPMAA 24 (106)
Q Consensus 2 ~s~~~~~~~~~~~~~y~~~~~~~ 24 (106)
++++.-.|++++||.|..+.-..
T Consensus 8 n~lirlvStAgtGf~~~~s~~k~ 30 (55)
T KOG3505|consen 8 NMLIRLVSTAGTGFFYVKSRKKL 30 (55)
T ss_pred hhHHHHHHhcccceEEEEecccc
Confidence 35677789999999998865443
No 22
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.53 E-value=57 Score=26.33 Aligned_cols=37 Identities=11% Similarity=0.192 Sum_probs=26.1
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCcc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEGQ 42 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP~ 42 (106)
.+++++||+|+|.++ +-++| .-.|.-+.+.+.|=.|.
T Consensus 178 GlIvsTptGSTAYsl--SAGGP-ii~P~~~~~~itPI~Ph 214 (292)
T PRK03378 178 GLIISTPTGSTAYSL--SAGGP-ILTPSLDAITLVPMFPH 214 (292)
T ss_pred EEEEeCCCchHHhHh--hcCCc-eeCCCCCeEEEEecccc
Confidence 478999999998763 33444 55666677777777773
No 23
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.10 E-value=57 Score=26.09 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=27.6
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCccc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEGQG 43 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP~~ 43 (106)
.|++++||+|+|.. -+-++| .-.|.-+-+.+.|=-|..
T Consensus 151 GlIVsTPtGSTAY~--lSAGGP-Iv~P~~~~~~itPI~P~~ 188 (264)
T PRK03501 151 GMVVSTPTGSTAYN--KSVRGA-VVDPLIPCFQVSELASLN 188 (264)
T ss_pred EEEEeCCCchHHHH--hhcCCc-ccCCCCCeEEEEeccccC
Confidence 47899999999866 444554 666677778888877853
No 24
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.86 E-value=64 Score=25.72 Aligned_cols=37 Identities=14% Similarity=0.168 Sum_probs=23.7
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCcc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEGQ 42 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP~ 42 (106)
.|++++||+|+|.+ -+-++| .-.|.-+.+.+.|=-|+
T Consensus 150 GlIVsTptGSTAYs--lSaGGP-Iv~P~~~~~~ltPI~~l 186 (265)
T PRK04885 150 GLCVSTPTGSTAYN--KSLGGA-VLHPSIEALQLTEIASI 186 (265)
T ss_pred EEEEECCCChHHHH--hhCCCc-eeCCCCCeEEEEeeccc
Confidence 47899999999866 444554 44445566655554454
No 25
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=28.26 E-value=66 Score=28.60 Aligned_cols=36 Identities=6% Similarity=0.164 Sum_probs=24.4
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEG 41 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP 41 (106)
.|++++||+|+|.++ +-++| .--|.-..|.+.|=-|
T Consensus 382 GLIVSTPTGSTAYsL--SAGGP-IV~P~l~~ivlTPIcP 417 (508)
T PLN02935 382 GLILSTTSGSTAYSL--AAGGS-MVHPQVPGILFTPICP 417 (508)
T ss_pred cEEEecCccHHHHHH--hcCCc-ccCCCCCeEEEEecCC
Confidence 478999999999664 34444 4445555666666666
No 26
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.43 E-value=74 Score=27.87 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=27.3
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCcc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEGQ 42 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP~ 42 (106)
.|++++||+|+|.++ +-++| .-.|.-+-+.+.|=.|.
T Consensus 463 GlivsTptGSTaYsl--SAGGP-iv~p~~~~~~~tPI~ph 499 (569)
T PRK14076 463 GIIISTPTGSTAYSL--SAGGP-IVEPTVDGFIIVPICPF 499 (569)
T ss_pred EEEEeCCCchHHHHh--hCCCc-eeCCCCCeEEEEeeccC
Confidence 478999999999764 34444 55667777888888884
No 27
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.46 E-value=71 Score=25.12 Aligned_cols=37 Identities=8% Similarity=0.096 Sum_probs=25.4
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCcc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEGQ 42 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP~ 42 (106)
.|++++||+|+|.. .+-++| .-.|.-+.+.+.+=.|.
T Consensus 148 G~ivsTptGSTaY~--lSaGGp-iv~p~~~~l~ItPI~Ph 184 (256)
T PRK14075 148 GVVISTPTGSTAYS--LSLGGP-IILPNCEVFEITPIAPQ 184 (256)
T ss_pred EEEEeCCCchHHHH--hhCCCc-eeCCCCCeEEeeeeehh
Confidence 47899999999866 444555 44555666677777773
No 28
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=24.94 E-value=41 Score=26.44 Aligned_cols=36 Identities=6% Similarity=0.133 Sum_probs=23.9
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEG 41 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP 41 (106)
+|++++||+|+|+.++. ++| .-.|.-..+.+.|=-|
T Consensus 193 GlivsTptGSTay~lSa--GGp-iv~p~~~~~~~tpi~p 228 (285)
T PF01513_consen 193 GLIVSTPTGSTAYSLSA--GGP-IVHPGLDVIILTPICP 228 (285)
T ss_dssp EEEEEETGGGGTHHHHT--T---EE-TTSSEEEEEEESE
T ss_pred eeEEEecCCceEEEEec--Ccc-EeccCcceeEEEeccc
Confidence 57899999999988653 333 4455666666666666
No 29
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=24.59 E-value=31 Score=20.84 Aligned_cols=17 Identities=35% Similarity=0.673 Sum_probs=8.7
Q ss_pred CccCccc-cccCcccCCCc
Q 033992 80 FPLCDGS-HVKHNKATGDN 97 (106)
Q Consensus 80 ~PfCDgs-H~~~~~~~g~~ 97 (106)
=||| |+ ........+.+
T Consensus 6 CPFC-G~~~~~~~~~~~~~ 23 (61)
T PF14354_consen 6 CPFC-GSADVLIRQDEGFD 23 (61)
T ss_pred CCCC-CCcceEeecccCCC
Confidence 4999 74 43333333333
No 30
>PF05798 Phage_FRD3: Bacteriophage FRD3 protein; InterPro: IPR008765 This is a group of proteins of unknown function from bacteriophage T2 and related phage.
Probab=23.26 E-value=31 Score=23.28 Aligned_cols=9 Identities=33% Similarity=0.767 Sum_probs=6.8
Q ss_pred ccCcccccc
Q 033992 81 PLCDGSHVK 89 (106)
Q Consensus 81 PfCDgsH~~ 89 (106)
-||||.|..
T Consensus 56 EYCdGM~~E 64 (75)
T PF05798_consen 56 EYCDGMDPE 64 (75)
T ss_pred HhccCCCHH
Confidence 479999864
No 31
>PF09443 CFC: Cripto_Frl-1_Cryptic (CFC); InterPro: IPR019011 This entry represents the CFC domain found in the membrane protein Cripto (or teratocarcinoma-derived growth factor), a protein over expressed in many tumours [, ] and structurally similar to the C-terminal extracellular portions of Jagged 1 and Jagged 2 []. CFC is approx 40-residues long, compacted by three internal disulphide bridges, and binds Alk4 via a hydrophobic patch. CFC is structurally homologous to the VWFC-like domain []. The protein Cripto is the founding member of the extra-cellular EGF-CFC growth factors, which are composed of two adjacent cysteine-rich domains: the EGF-like (IPR006210 from INTERPRO) and the CFC domains. Members of the EGF-CFC family play key roles in embryonic development and are also implicated in tumourigenesis []. The Cripto protein could play a role in the determination of the epiblastic cells that subsequently give rise to the mesoderm. Although both the EGF and CFC domains are involved in the tumourigenic activity of Crispto proteins, the CFC domain appears to play a crucial role, as it is through the CFC domain that Crispto interferes with the onco-suppressive activity of Activins, either by blocking the Activin receptor ALK4 or by antagonising proteins of the TGF-beta family []. The Cryptic protein is involved in the correct establishment of the left-right axis. May play a role in mesoderm and/or neural patterning during gastrulation.; PDB: 2J5H_A.
Probab=21.23 E-value=37 Score=20.01 Aligned_cols=11 Identities=36% Similarity=1.078 Sum_probs=2.0
Q ss_pred eEEEEEecccC
Q 033992 68 LTAYCRCWRSG 78 (106)
Q Consensus 68 ~~~lCrCg~S~ 78 (106)
.-.+|||++..
T Consensus 13 ~C~lCrC~~G~ 23 (36)
T PF09443_consen 13 GCSLCRCWYGT 23 (36)
T ss_dssp --------SSS
T ss_pred CceeeEeecCc
Confidence 46899999864
Done!