Query 033992
Match_columns 106
No_of_seqs 130 out of 553
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 14:23:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s2r_A AT5G51720/MIO24_14; red 100.0 2.3E-30 8E-35 175.2 -0.2 77 30-106 6-83 (83)
2 3fnv_A CDGSH iron sulfur domai 99.9 1.3E-27 4.4E-32 161.9 0.9 65 42-106 17-81 (83)
3 4ezf_A Mitoneet, CDGSH iron-su 99.9 1.6E-27 5.5E-32 159.5 0.9 66 41-106 10-75 (77)
4 3ew0_A Mitoneet, CDGSH iron su 99.9 2.3E-24 7.9E-29 145.3 1.1 63 43-106 16-78 (80)
5 3tbm_A Putative uncharacterize 99.8 1.6E-21 5.6E-26 128.1 4.0 58 31-94 7-66 (69)
6 3tbo_A Zinc finger, CDGSH-type 99.7 3.1E-18 1.1E-22 110.0 1.7 46 32-95 3-48 (60)
7 3tbn_A Putative uncharacterize 99.4 1.6E-13 5.5E-18 93.6 3.2 35 64-104 25-59 (87)
8 3tbn_A Putative uncharacterize 99.0 1.1E-10 3.8E-15 79.5 2.3 29 61-89 58-86 (87)
9 2j5h_A Teratocarcinoma-derived 58.8 2 6.9E-05 25.3 0.0 19 67-85 16-41 (41)
10 2jx1_A Myelin transcription fa 56.8 4.8 0.00016 22.2 1.3 14 80-93 6-20 (31)
11 2jyd_A F5 domain of myelin tra 43.4 9.9 0.00034 22.7 1.3 15 79-93 13-28 (46)
12 1z0s_A Probable inorganic poly 30.1 24 0.00084 27.2 2.0 36 3-41 175-210 (278)
13 2fqc_A Conotoxin PL14A; alpha- 27.4 6.7 0.00023 20.9 -1.1 14 71-84 10-23 (26)
14 3pfn_A NAD kinase; structural 26.9 27 0.00093 28.1 1.8 36 3-41 249-284 (365)
15 1pxe_A Neural zinc finger tran 25.4 29 0.00098 21.9 1.3 14 80-93 22-36 (63)
No 1
>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein; 1.14A {Arabidopsis thaliana} PDB: 3s2q_A
Probab=99.95 E-value=2.3e-30 Score=175.18 Aligned_cols=77 Identities=82% Similarity=1.305 Sum_probs=62.6
Q ss_pred CCceEEEecCCc-ccccceEeCCCCeeEeceeeeecCCCeEEEEEecccCCCccCccccccCcccCCCccCceeeeeC
Q 033992 30 RPRRVVVVRAEG-QGINLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 106 (106)
Q Consensus 30 ~~~ri~v~~~GP-~~~n~~I~~~~~kvVd~~~~~~~~~~~~~lCrCg~S~~~PfCDgsH~~~~~~~g~~~~p~~~~~~ 106 (106)
++++++++++.. ..+|+.|++++.|+||.++++++.+..++|||||+|+++|||||||.++|+++|+|||||+|+||
T Consensus 6 ~~~~~~~v~~~~g~~vN~~I~K~~~KVVD~vdiedl~~~~~~~CrC~~Sk~~P~CDGSH~k~n~etGdNvgPlivkk~ 83 (83)
T 3s2r_A 6 KQQRMVVVRAEGGGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPLLLKKQ 83 (83)
T ss_dssp --------------CCCSSTTTTSSSCCEEEEGGGCCSSEEEECSSSCCTTTTBCCSHHHHHHHHHTCCEEEEEEECC
T ss_pred cccceEEEEhhhcCccCchhhcCCCceecccchhhccCCceEEEecCCCCCCCccCchhHHHhhhcCCCcCCeEEecC
Confidence 456666666654 69999999999999999999999888999999999999999999999999999999999999997
No 2
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane bound, thiazolidinedione, oxidative stres endoplasmic reticulum, membrane; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.3e-27 Score=161.91 Aligned_cols=65 Identities=62% Similarity=1.067 Sum_probs=62.5
Q ss_pred ccccceEeCCCCeeEeceeeeecCCCeEEEEEecccCCCccCccccccCcccCCCccCceeeeeC
Q 033992 42 QGINLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 106 (106)
Q Consensus 42 ~~~n~~I~~~~~kvVd~~~~~~~~~~~~~lCrCg~S~~~PfCDgsH~~~~~~~g~~~~p~~~~~~ 106 (106)
.++|..|++++.++||.+.++++++..++|||||+|+|+|||||||++++.++|+|||||+|+||
T Consensus 17 ~~vN~~I~k~~pKvVd~~diedl~~~k~~~CrC~~S~~~PfCDGsH~~~n~etGdnvgPli~~~k 81 (83)
T 3fnv_A 17 SLINLKIQKENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLILKKK 81 (83)
T ss_dssp CCSCSSSCTTSSSEEEEEEGGGCCSSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCEEEEEEECC
T ss_pred cccCcceecCCCcEeeeechhhccCCCEEEEeCCCCCCCCccCchhhhcccccCCccCCeEEEec
Confidence 48999999999999999999999878899999999999999999999999999999999999986
No 3
>4ezf_A Mitoneet, CDGSH iron-sulfur domain-containing protein 1; 2Fe-2S proteins, membrane, mitochondrion, signal-anchor, transmembrane; 1.19A {Homo sapiens} PDB: 2qd0_A 3ree_A 2r13_A 3ew0_A 2qh7_A 4f1e_A 4f2c_A 4f28_A 3lpq_A
Probab=99.93 E-value=1.6e-27 Score=159.54 Aligned_cols=66 Identities=52% Similarity=1.019 Sum_probs=62.6
Q ss_pred cccccceEeCCCCeeEeceeeeecCCCeEEEEEecccCCCccCccccccCcccCCCccCceeeeeC
Q 033992 41 GQGINLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 106 (106)
Q Consensus 41 P~~~n~~I~~~~~kvVd~~~~~~~~~~~~~lCrCg~S~~~PfCDgsH~~~~~~~g~~~~p~~~~~~ 106 (106)
..++|..|++++.++||.+.++++..++++|||||+|+++|||||||.+++.++|+|||||+|+||
T Consensus 10 ~~~vN~~i~kd~pKVVd~~diEdl~~~k~~~CrC~~Sk~~PfCDGsH~~hn~etGdnvgPl~~~~k 75 (77)
T 4ezf_A 10 KAMINLHIQKDNPKIVHAFDMEDLGDAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 75 (77)
T ss_dssp TTCSCSSSCTTSSSEEEEEESBTTSCSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCEEEEEEECB
T ss_pred ccccccceecCCCcEeeccchhhcCCccEEEEeCCCCCCCCccCCchhhhccccCCCccCeEEEec
Confidence 358999999999999999999999866999999999999999999999999999999999999986
No 4
>3ew0_A Mitoneet, CDGSH iron sulfur domain-containing protein 1; mitochondrial outer membrane, 2Fe-2S proteins, isotopic LABE highyield expression; 1.40A {Homo sapiens} PDB: 2r13_A 2qd0_A 3ree_A 2qh7_A 3lpq_A
Probab=99.88 E-value=2.3e-24 Score=145.28 Aligned_cols=63 Identities=54% Similarity=1.066 Sum_probs=52.9
Q ss_pred cccceEeCCCCeeEeceeeeecCCCeEEEEEecccCCCccCccccccCcccCCCccCceeeeeC
Q 033992 43 GINLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 106 (106)
Q Consensus 43 ~~n~~I~~~~~kvVd~~~~~~~~~~~~~lCrCg~S~~~PfCDgsH~~~~~~~g~~~~p~~~~~~ 106 (106)
.+|..|.++...+|+.+.+++.. ..++|||||+|+|+|||||||.++++++|+|||||+|+++
T Consensus 16 ~vni~I~k~gP~~V~~~~led~~-~~~~~C~Cg~S~~~PfCDGsH~~~~~etgdnvgPl~~~~~ 78 (80)
T 3ew0_A 16 MINLHIQKDNPKIVHAFDMEDLG-DKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK 78 (80)
T ss_dssp CSCSSSCTTSSSEEEEECGGGCC-SEEEECSSSCCTTTTBCCSHHHHHHHHHCCCCCCEEEECC
T ss_pred ccCeEEeCCCCEEEEeeccccCC-CeEEEeeCCCCCCCcccCCccCCcCcccCCCcCCEEEEec
Confidence 56666777777777755555443 5899999999999999999999999999999999999975
No 5
>3tbm_A Putative uncharacterized protein; iron-sulfur, CDGSH, metal binding protein; HET: 2PE TLA; 1.80A {Ralstonia solanacearum}
Probab=99.83 E-value=1.6e-21 Score=128.14 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=51.0
Q ss_pred CceEEEecCCcc--cccceEeCCCCeeEeceeeeecCCCeEEEEEecccCCCccCccccccCcccC
Q 033992 31 PRRVVVVRAEGQ--GINLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKAT 94 (106)
Q Consensus 31 ~~ri~v~~~GP~--~~n~~I~~~~~kvVd~~~~~~~~~~~~~lCrCg~S~~~PfCDgsH~~~~~~~ 94 (106)
+.+|++.+|||| +++.+|...+|+.+. +++..++|||||+|+|+|||||||++.+|+.
T Consensus 7 ~~~I~v~~nGPl~V~G~v~i~~~dG~~~~------~~~~~~~lC~Cg~S~n~PfCDGsH~~~~f~~ 66 (69)
T 3tbm_A 7 DVVITARNNGPYHIKGSFRIVTQGGRELP------VEQGQAWLCRCGHSLNKPFCDGSHKRVEFDS 66 (69)
T ss_dssp -CEEEECTTSCEEEESSCEEEESSCCEEC------CBTTEEEECCSSCCSSTTBCCSHHHHTTCCC
T ss_pred ceEEEEeCCCCEEEECCCeEECCCCCEEe------eCCCEEEEeeCCCCCCCCccCCCcCCCCccc
Confidence 578999999996 788888888888775 5678999999999999999999999999964
No 6
>3tbo_A Zinc finger, CDGSH-type domain protein; iron-sulfur, metal binding protein; 1.50A {Pyrobaculum calidifontis}
Probab=99.69 E-value=3.1e-18 Score=110.02 Aligned_cols=46 Identities=24% Similarity=0.460 Sum_probs=37.3
Q ss_pred ceEEEecCCcccccceEeCCCCeeEeceeeeecCCCeEEEEEecccCCCccCccccccCcccCC
Q 033992 32 RRVVVVRAEGQGINLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATG 95 (106)
Q Consensus 32 ~ri~v~~~GP~~~n~~I~~~~~kvVd~~~~~~~~~~~~~lCrCg~S~~~PfCDgsH~~~~~~~g 95 (106)
.+|++.+|||+.+. ++ ...++|||||+|+|+|||||||+..+|+..
T Consensus 3 ~~I~v~~ngP~~v~----------~e--------~~~~~lC~CG~S~n~PFCDGSHk~~~f~~~ 48 (60)
T 3tbo_A 3 VEIRAIENGPYEVK----------IG--------GRAIYLCRCGHSGSKPHCDGTHAKVGFKAP 48 (60)
T ss_dssp CEEEECTTSCEEEE----------C-----------CEEECCSSCCTTTTBCCSHHHHHTCCCC
T ss_pred EEEEEeCCCCEEEE----------EC--------CcEEEEEECCCCCCCCccCCcCCCCccccC
Confidence 58999999998753 11 135799999999999999999999998654
No 7
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}
Probab=99.38 E-value=1.6e-13 Score=93.61 Aligned_cols=35 Identities=31% Similarity=0.605 Sum_probs=28.8
Q ss_pred cCCCeEEEEEecccCCCccCccccccCcccCCCccCceeee
Q 033992 64 LSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLK 104 (106)
Q Consensus 64 ~~~~~~~lCrCg~S~~~PfCDgsH~~~~~~~g~~~~p~~~~ 104 (106)
.+...|+||+||+|+|+|||||||+..+| .||.++
T Consensus 25 e~g~~~~~C~CG~S~~~PfCDGSH~~~~f------~P~~f~ 59 (87)
T 3tbn_A 25 EAGKTYHWCACGRSKAQPFCDGSHKGTGL------APVAYT 59 (87)
T ss_dssp CTTCCEEECSSSCCSSTTBCCSTTTTTTC------CCEEEC
T ss_pred CCCCEEEEeeCCCCCCCCCcCCccccCCc------cceEEE
Confidence 34457999999999999999999997654 577665
No 8
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}
Probab=99.00 E-value=1.1e-10 Score=79.55 Aligned_cols=29 Identities=34% Similarity=0.613 Sum_probs=24.5
Q ss_pred eeecCCCeEEEEEecccCCCccCcccccc
Q 033992 61 VTELSKPLTAYCRCWRSGTFPLCDGSHVK 89 (106)
Q Consensus 61 ~~~~~~~~~~lCrCg~S~~~PfCDgsH~~ 89 (106)
+...+...++||+|++|+|.|||||||++
T Consensus 58 f~~e~~~~~~lC~CK~T~n~PfCDGsH~~ 86 (87)
T 3tbn_A 58 YTPDKAGTAYFCGCKASKAPPLCDGTHKT 86 (87)
T ss_dssp ECCSSCEEEEECSSSCCSSTTBCCSGGGT
T ss_pred EEECCCcEEEEecCCCCCCCCccCCcCCc
Confidence 44444568999999999999999999986
No 9
>2j5h_A Teratocarcinoma-derived growth factor; hormone/growth factor, EGF-CFC family, cripto, tumour progression, cysteine-rich domains; NMR {Mus musculus} SCOP: g.3.11.7
Probab=58.81 E-value=2 Score=25.25 Aligned_cols=19 Identities=37% Similarity=1.018 Sum_probs=13.4
Q ss_pred CeEEEEEeccc-------CCCccCcc
Q 033992 67 PLTAYCRCWRS-------GTFPLCDG 85 (106)
Q Consensus 67 ~~~~lCrCg~S-------~~~PfCDg 85 (106)
..-.||||++. ...|=|||
T Consensus 16 k~C~LCRC~~G~LhCfp~~~~~~CD~ 41 (41)
T 2j5h_A 16 KKCSLCRCWHGQLHCLPQTFLPGCDX 41 (41)
T ss_dssp CCCCCCCCCSSSCCSCCSSSSTTCC-
T ss_pred cCceEEEeecCceEEcccccCCCCCC
Confidence 45789999974 46677776
No 10
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=56.76 E-value=4.8 Score=22.20 Aligned_cols=14 Identities=57% Similarity=0.902 Sum_probs=10.4
Q ss_pred CccCccc-cccCccc
Q 033992 80 FPLCDGS-HVKHNKA 93 (106)
Q Consensus 80 ~PfCDgs-H~~~~~~ 93 (106)
.|+|||+ |.+-++.
T Consensus 6 tpGC~g~GH~~g~~~ 20 (31)
T 2jx1_A 6 TPGCDGSGHITGNYA 20 (31)
T ss_dssp CTTCCSSCCSSSSCS
T ss_pred CCCccccceeccccc
Confidence 6999996 7766554
No 11
>2jyd_A F5 domain of myelin transcription factor 1; zinc-finger, MYT1, alternative splicing, developmental protein, differentiation, DNA-binding; NMR {Mus musculus}
Probab=43.39 E-value=9.9 Score=22.70 Aligned_cols=15 Identities=53% Similarity=0.844 Sum_probs=10.8
Q ss_pred CCccCccc-cccCccc
Q 033992 79 TFPLCDGS-HVKHNKA 93 (106)
Q Consensus 79 ~~PfCDgs-H~~~~~~ 93 (106)
-.|+|||+ |.+-++.
T Consensus 13 PtpGC~G~GHv~G~y~ 28 (46)
T 2jyd_A 13 PTPGCDGSGHITGNYA 28 (46)
T ss_dssp SCSSCCSBSCSSSSSS
T ss_pred CCCCcCccCccccccc
Confidence 36999997 7765554
No 12
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=30.05 E-value=24 Score=27.20 Aligned_cols=36 Identities=11% Similarity=0.227 Sum_probs=24.1
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEG 41 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP 41 (106)
.|++++||+|+|..++ -++| .-.|.-+.+.+.|=.|
T Consensus 175 GlIVsTPTGSTAY~lS--AGGp-Iv~P~~~~l~ltPI~P 210 (278)
T 1z0s_A 175 GFIVATQIGSTGYAFS--AGGP-VVEPYLECFILIPIAP 210 (278)
T ss_dssp EEEEEESGGGGTHHHH--TTCC-EECTTSCCEEEEEESC
T ss_pred eEEEecCCchhHHHhh--CCCc-eeCCCCCeEEEEEeCC
Confidence 3789999999997765 3444 3344555666666666
No 13
>2fqc_A Conotoxin PL14A; alpha-helix, disulfide bonds; NMR {Synthetic}
Probab=27.41 E-value=6.7 Score=20.86 Aligned_cols=14 Identities=29% Similarity=0.804 Sum_probs=11.1
Q ss_pred EEEecccCCCccCc
Q 033992 71 YCRCWRSGTFPLCD 84 (106)
Q Consensus 71 lCrCg~S~~~PfCD 84 (106)
-||-|.-..+|||.
T Consensus 10 aCR~g~GH~YPfC~ 23 (26)
T 2fqc_A 10 ACRAGIGHKYPFCH 23 (26)
T ss_dssp HHHHTGGGTCGGGC
T ss_pred HHhccCCccCCcCC
Confidence 37778888899984
No 14
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=26.90 E-value=27 Score=28.05 Aligned_cols=36 Identities=6% Similarity=0.111 Sum_probs=26.9
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCc
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEG 41 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP 41 (106)
.|++++||+|+|.+++. ++| .-.|.-..|.+.|=.|
T Consensus 249 GlIVSTPTGSTAYslSA--GGP-Iv~P~~~~i~ltPI~P 284 (365)
T 3pfn_A 249 GVIVSTPTGSTAYAAAA--GAS-MIHPNVPAIMITPICP 284 (365)
T ss_dssp EEEEECGGGGGTHHHHT--TCC-EECTTSCCEEEEEESC
T ss_pred eEEEeCCccHHHHHHhC--CCC-ccCCCCCeEEEEeccC
Confidence 47899999999977544 554 5566777788887777
No 15
>1pxe_A Neural zinc finger transcription factor 1; CCHHC zinc binding domain, neural zinc finger factor-1, DNA binding domain, metal binding protein; NMR {Rattus norvegicus} SCOP: g.73.1.1
Probab=25.39 E-value=29 Score=21.91 Aligned_cols=14 Identities=43% Similarity=0.681 Sum_probs=10.2
Q ss_pred CccCccc-cccCccc
Q 033992 80 FPLCDGS-HVKHNKA 93 (106)
Q Consensus 80 ~PfCDgs-H~~~~~~ 93 (106)
.|+|||+ |..-++.
T Consensus 22 tpGC~G~GHv~G~y~ 36 (63)
T 1pxe_A 22 TPGCDGTGHVTGLYP 36 (63)
T ss_dssp CSSCCCCSTTTSCSS
T ss_pred CCCcCccCccccccc
Confidence 6999996 7765543
Done!