Query 033992
Match_columns 106
No_of_seqs 130 out of 553
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 14:24:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033992.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033992hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u0ta_ e.52.1.1 (A:) Inorgani 34.2 7.7 0.00056 28.2 1.6 46 3-51 186-233 (302)
2 d2j5ha1 g.3.11.7 (A:1-39) Crip 28.0 3.8 0.00028 22.4 -0.8 12 67-78 15-26 (39)
3 d1z0sa1 e.52.1.1 (A:1-249) Ino 26.1 14 0.001 26.1 1.9 50 3-55 146-197 (249)
4 d2fd6u2 g.7.1.3 (U:189-275) Ur 21.0 13 0.00093 23.3 0.6 31 62-95 41-71 (87)
5 d1yoba1 c.23.5.1 (A:1-179) Fla 20.5 26 0.0019 23.2 2.2 25 63-87 85-111 (179)
6 d1v54g_ f.23.2.1 (G:) Mitochon 20.1 18 0.0013 22.2 1.2 14 76-89 56-69 (84)
7 d1ag9a_ c.23.5.1 (A:) Flavodox 16.9 27 0.0019 22.9 1.6 25 64-88 77-103 (175)
8 d1dkca_ g.3.4.2 (A:) Antifunga 15.2 31 0.0023 18.2 1.3 14 73-86 9-22 (38)
9 d1pxea_ g.73.1.1 (A:) Neural z 11.2 49 0.0036 18.3 1.3 14 80-93 7-21 (48)
10 d2fcra_ c.23.5.1 (A:) Flavodox 10.6 69 0.0051 20.7 2.3 24 64-87 82-107 (173)
No 1
>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=34.16 E-value=7.7 Score=28.20 Aligned_cols=46 Identities=11% Similarity=0.123 Sum_probs=30.7
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCcc--cccceEeCC
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEGQ--GINLDIRKT 51 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP~--~~n~~I~~~ 51 (106)
.|++|+||+|+|..++. ++| .--|.-..+.+.+-.|. ...+-|...
T Consensus 186 GlivSTPtGSTAYslSa--GGP-Iv~p~~~~i~vtpi~p~sl~~rplVl~~ 233 (302)
T d1u0ta_ 186 GVLVSTPTGSTAYAFSA--GGP-VLWPDLEAILVVPNNAHALFGRPMVTSP 233 (302)
T ss_dssp EEEEECTGGGGTHHHHT--TCC-EECTTCCCEEEEEESCSSSCCCCEEECT
T ss_pred eEEEehhhccCcchhhc--cCc-ccccccccccccccccccccCceEEecC
Confidence 47899999999977544 444 55566677888888884 333444433
No 2
>d2j5ha1 g.3.11.7 (A:1-39) Cripto growth factor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.02 E-value=3.8 Score=22.37 Aligned_cols=12 Identities=33% Similarity=1.104 Sum_probs=9.6
Q ss_pred CeEEEEEecccC
Q 033992 67 PLTAYCRCWRSG 78 (106)
Q Consensus 67 ~~~~lCrCg~S~ 78 (106)
+.-++||||+-.
T Consensus 15 k~CslCrC~~G~ 26 (39)
T d2j5ha1 15 KKCSLCRCWHGQ 26 (39)
T ss_dssp CCCCCCCCCSSS
T ss_pred ccceEEEeccCc
Confidence 467999999864
No 3
>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase PpnK {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=26.11 E-value=14 Score=26.09 Aligned_cols=50 Identities=16% Similarity=0.231 Sum_probs=31.9
Q ss_pred ccccccCCCccceEEecCCCCCCccCCCCceEEEecCCcc--cccceEeCCCCee
Q 033992 3 SIAMSCSAAVPGFRFNKSPMAAGVVTARPRRVVVVRAEGQ--GINLDIRKTEEKV 55 (106)
Q Consensus 3 s~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ri~v~~~GP~--~~n~~I~~~~~kv 55 (106)
.|++++||+|+|..+ +-++| .-.|.-+.+.+.+--|. ...+.|...+.++
T Consensus 146 GliisTptGSTAY~l--SaGGp-Iv~p~~~~~~ltpI~p~~l~~rplVl~~~~~I 197 (249)
T d1z0sa1 146 GFIVATQIGSTGYAF--SAGGP-VVEPYLECFILIPIAPFRFGWKPYVVSMERKI 197 (249)
T ss_dssp EEEEEESGGGGTHHH--HTTCC-EECTTSCCEEEEEESCCSSBCCCEEECTTSCE
T ss_pred eEEEeccccCHHHHH--hcCCc-eeecCCCceEEeeecccccCCCCEEECCCCEE
Confidence 478999999999663 44444 55566677777777774 3444444444433
No 4
>d2fd6u2 g.7.1.3 (U:189-275) Urokinase plasminogen activator surface receptor, UPAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.99 E-value=13 Score=23.31 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=19.7
Q ss_pred eecCCCeEEEEEecccCCCccCccccccCcccCC
Q 033992 62 TELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATG 95 (106)
Q Consensus 62 ~~~~~~~~~lCrCg~S~~~PfCDgsH~~~~~~~g 95 (106)
+...+..+.+=.|+ +.|+|-|+|..++|.+.
T Consensus 41 ~~~~~~s~~vRGCa---t~~~C~g~~~~~~f~t~ 71 (87)
T d2fd6u2 41 HEPKNQSYMVRGCA---TASMCQHAHLGDAFSMN 71 (87)
T ss_dssp ETTTTEEEEEEEEE---CGGGCC---CGGGGTCS
T ss_pred ccCCCccceecccc---cCcCCCCCccccccccc
Confidence 33444456666665 68999999999999765
No 5
>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]}
Probab=20.45 E-value=26 Score=23.23 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=20.3
Q ss_pred ecCCCeEEEEEecccCCCc--cCcccc
Q 033992 63 ELSKPLTAYCRCWRSGTFP--LCDGSH 87 (106)
Q Consensus 63 ~~~~~~~~lCrCg~S~~~P--fCDgsH 87 (106)
.+...+++++.||-|...+ |||+..
T Consensus 85 ~l~g~~~avfGlGDs~~~~~~Fc~a~~ 111 (179)
T d1yoba1 85 DFSGKTVALFGLGDQVGYPENYLDALG 111 (179)
T ss_dssp CCTTCEEEEEEECCTTTCTTTTTHHHH
T ss_pred ccCCcEEEEEEecCCcccchhHHHHHH
Confidence 3556789999999998755 999984
No 6
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.06 E-value=18 Score=22.22 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=11.9
Q ss_pred ccCCCccCcccccc
Q 033992 76 RSGTFPLCDGSHVK 89 (106)
Q Consensus 76 ~S~~~PfCDgsH~~ 89 (106)
|+|++||=||-|..
T Consensus 56 R~K~FpWGDG~~tL 69 (84)
T d1v54g_ 56 RTKPFSWGDGNHTF 69 (84)
T ss_dssp CSSCCSSTTSSSCT
T ss_pred hccccCCCCCCccc
Confidence 78999999998753
No 7
>d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]}
Probab=16.94 E-value=27 Score=22.89 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=19.8
Q ss_pred cCCCeEEEEEecccCCC--ccCccccc
Q 033992 64 LSKPLTAYCRCWRSGTF--PLCDGSHV 88 (106)
Q Consensus 64 ~~~~~~~lCrCg~S~~~--PfCDgsH~ 88 (106)
+...+++++.||-|... .|||+.+.
T Consensus 77 l~~~~~avfglGd~~~~~~~F~~a~~~ 103 (175)
T d1ag9a_ 77 FNGKLVALFGCGDQEDYAEYFCDALGT 103 (175)
T ss_dssp CTTCEEEEEEECCTTTTTTSTTHHHHH
T ss_pred cCCCcEEEEEccCCchhhhHHHHHHHH
Confidence 55678999999988764 59998753
No 8
>d1dkca_ g.3.4.2 (A:) Antifungal peptide PAFP-S {Pokeweed (Phytolacca americana) [TaxId: 3527]}
Probab=15.19 E-value=31 Score=18.25 Aligned_cols=14 Identities=43% Similarity=0.674 Sum_probs=11.9
Q ss_pred EecccCCCccCccc
Q 033992 73 RCWRSGTFPLCDGS 86 (106)
Q Consensus 73 rCg~S~~~PfCDgs 86 (106)
||-.|...|||=.+
T Consensus 9 rcn~~~gppyccs~ 22 (38)
T d1dkca_ 9 RCNASAGPPYCCSS 22 (38)
T ss_dssp EECTTSCCCCCSSS
T ss_pred eecccCCCCceech
Confidence 78999999999654
No 9
>d1pxea_ g.73.1.1 (A:) Neural zinc finger transcription factor 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.19 E-value=49 Score=18.35 Aligned_cols=14 Identities=43% Similarity=0.681 Sum_probs=9.7
Q ss_pred CccCccc-cccCccc
Q 033992 80 FPLCDGS-HVKHNKA 93 (106)
Q Consensus 80 ~PfCDgs-H~~~~~~ 93 (106)
-|=|||+ |..-.+.
T Consensus 7 tpGCdG~GHv~G~y~ 21 (48)
T d1pxea_ 7 TPGCDGTGHVTGLYP 21 (48)
T ss_dssp CSSCCCCSTTTSCSS
T ss_pred CCCcCCCCccCCccc
Confidence 4789996 7765554
No 10
>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}
Probab=10.62 E-value=69 Score=20.66 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=19.4
Q ss_pred cCCCeEEEEEecccCCC--ccCcccc
Q 033992 64 LSKPLTAYCRCWRSGTF--PLCDGSH 87 (106)
Q Consensus 64 ~~~~~~~lCrCg~S~~~--PfCDgsH 87 (106)
+....+++..||-|..+ -|||+..
T Consensus 82 l~gk~~avFGlGD~~~y~~~F~~a~~ 107 (173)
T d2fcra_ 82 MKDLPVAIFGLGDAEGYPDNFCDAIE 107 (173)
T ss_dssp CTTCEEEEEEEECTTTCTTSTTTHHH
T ss_pred CCCCeEEEEEecCCCcchhhHHHHHH
Confidence 55678999999999854 4999873
Done!