Query 033994
Match_columns 106
No_of_seqs 101 out of 1612
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 08:36:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033994.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033994hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 3.9E-21 8.5E-26 114.5 11.7 82 24-105 32-113 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.1E-19 4.6E-24 120.1 11.9 79 26-104 269-347 (352)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 3.1E-19 6.7E-24 119.3 11.3 81 25-105 2-82 (352)
4 KOG0122 Translation initiation 99.8 4.9E-19 1.1E-23 110.8 10.4 82 24-105 187-268 (270)
5 PF00076 RRM_1: RNA recognitio 99.8 1.3E-18 2.8E-23 91.5 10.4 70 29-99 1-70 (70)
6 TIGR01659 sex-lethal sex-letha 99.8 4.7E-19 1E-23 118.3 10.6 84 22-105 103-186 (346)
7 PF14259 RRM_6: RNA recognitio 99.8 2E-17 4.2E-22 87.3 10.6 70 29-99 1-70 (70)
8 TIGR01659 sex-lethal sex-letha 99.8 1.6E-17 3.5E-22 111.0 10.9 82 24-105 191-274 (346)
9 TIGR01645 half-pint poly-U bin 99.7 2.5E-17 5.4E-22 115.9 11.3 80 25-104 203-282 (612)
10 KOG0149 Predicted RNA-binding 99.7 7.5E-18 1.6E-22 105.0 7.2 78 25-103 11-88 (247)
11 TIGR01628 PABP-1234 polyadenyl 99.7 3.3E-17 7.2E-22 115.5 10.7 79 28-106 2-80 (562)
12 TIGR01645 half-pint poly-U bin 99.7 3.6E-17 7.7E-22 115.2 10.0 80 24-103 105-184 (612)
13 TIGR01648 hnRNP-R-Q heterogene 99.7 5.7E-17 1.2E-21 113.8 10.8 100 2-103 35-135 (578)
14 KOG0113 U1 small nuclear ribon 99.7 4.9E-17 1.1E-21 104.4 9.0 80 24-103 99-178 (335)
15 KOG0121 Nuclear cap-binding pr 99.7 3E-17 6.4E-22 94.1 6.9 81 23-103 33-113 (153)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.7 1.9E-16 4E-21 110.4 11.8 81 24-104 293-373 (509)
17 PLN03120 nucleic acid binding 99.7 1.3E-16 2.9E-21 101.8 10.1 75 26-104 4-78 (260)
18 TIGR01622 SF-CC1 splicing fact 99.7 1.9E-16 4.2E-21 109.2 11.2 79 26-104 186-264 (457)
19 smart00362 RRM_2 RNA recogniti 99.7 5.4E-16 1.2E-20 81.1 9.2 72 28-101 1-72 (72)
20 TIGR01622 SF-CC1 splicing fact 99.7 4.7E-16 1E-20 107.3 11.2 82 22-104 85-166 (457)
21 KOG0117 Heterogeneous nuclear 99.7 3.3E-16 7.1E-21 105.2 9.9 96 7-103 65-161 (506)
22 KOG0145 RNA-binding protein EL 99.7 2.3E-16 5.1E-21 100.1 8.7 84 22-105 37-120 (360)
23 KOG0125 Ataxin 2-binding prote 99.7 1.6E-16 3.5E-21 103.2 8.2 84 20-105 90-173 (376)
24 KOG0107 Alternative splicing f 99.7 2.2E-16 4.8E-21 94.8 7.7 76 24-104 8-83 (195)
25 KOG4207 Predicted splicing fac 99.7 1.3E-16 2.8E-21 98.2 6.7 83 22-104 9-91 (256)
26 TIGR01628 PABP-1234 polyadenyl 99.7 6.6E-16 1.4E-20 109.0 10.9 81 24-105 283-363 (562)
27 KOG0114 Predicted RNA-binding 99.7 8.3E-16 1.8E-20 85.2 8.7 82 21-105 13-94 (124)
28 KOG0111 Cyclophilin-type pepti 99.7 7.4E-17 1.6E-21 100.2 4.4 84 23-106 7-90 (298)
29 KOG0148 Apoptosis-promoting RN 99.7 5.8E-16 1.3E-20 98.5 7.7 80 26-105 62-141 (321)
30 smart00360 RRM RNA recognition 99.7 1.6E-15 3.5E-20 78.9 8.3 71 31-101 1-71 (71)
31 PLN03213 repressor of silencin 99.7 1.1E-15 2.4E-20 104.3 9.5 79 23-105 7-87 (759)
32 KOG0148 Apoptosis-promoting RN 99.7 1.7E-15 3.6E-20 96.5 9.4 76 23-104 161-236 (321)
33 PLN03121 nucleic acid binding 99.6 3.5E-15 7.6E-20 94.2 10.4 75 25-103 4-78 (243)
34 KOG0126 Predicted RNA-binding 99.6 2.8E-17 6E-22 99.3 0.9 78 25-102 34-111 (219)
35 KOG0108 mRNA cleavage and poly 99.6 9.4E-16 2E-20 104.5 8.2 79 27-105 19-97 (435)
36 cd00590 RRM RRM (RNA recogniti 99.6 1.5E-14 3.2E-19 75.9 10.0 74 28-102 1-74 (74)
37 COG0724 RNA-binding proteins ( 99.6 6.4E-15 1.4E-19 94.3 10.0 79 26-104 115-193 (306)
38 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.5E-14 3.2E-19 100.7 11.0 76 25-105 274-350 (481)
39 TIGR01648 hnRNP-R-Q heterogene 99.6 1.4E-14 3.1E-19 101.9 10.8 73 25-105 232-306 (578)
40 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.6E-14 3.4E-19 100.5 10.3 74 26-105 2-77 (481)
41 KOG0130 RNA-binding protein RB 99.6 4E-15 8.7E-20 86.2 6.1 79 25-103 71-149 (170)
42 KOG0127 Nucleolar protein fibr 99.6 1.2E-14 2.6E-19 100.0 8.2 78 26-104 117-194 (678)
43 KOG0131 Splicing factor 3b, su 99.6 7.1E-15 1.5E-19 88.8 6.2 83 22-104 5-87 (203)
44 KOG0144 RNA-binding protein CU 99.6 1.1E-14 2.5E-19 97.6 7.7 90 17-106 25-117 (510)
45 KOG0105 Alternative splicing f 99.5 1.7E-14 3.7E-19 87.6 6.4 78 24-104 4-81 (241)
46 KOG0117 Heterogeneous nuclear 99.5 3.2E-14 6.9E-19 95.8 7.6 73 25-105 258-330 (506)
47 PF13893 RRM_5: RNA recognitio 99.5 1.2E-13 2.7E-18 69.8 8.0 56 43-103 1-56 (56)
48 KOG0144 RNA-binding protein CU 99.5 1.2E-14 2.5E-19 97.6 5.2 80 25-105 123-205 (510)
49 KOG0124 Polypyrimidine tract-b 99.5 2.1E-14 4.5E-19 95.1 4.5 77 26-102 113-189 (544)
50 KOG0415 Predicted peptidyl pro 99.5 1E-13 2.2E-18 91.4 7.0 82 23-104 236-317 (479)
51 smart00361 RRM_1 RNA recogniti 99.5 5.5E-13 1.2E-17 70.4 7.9 62 40-101 2-70 (70)
52 KOG0145 RNA-binding protein EL 99.5 8.8E-13 1.9E-17 84.1 10.0 82 22-103 274-355 (360)
53 KOG0127 Nucleolar protein fibr 99.5 6.8E-13 1.5E-17 91.5 9.6 82 22-103 288-375 (678)
54 KOG4206 Spliceosomal protein s 99.5 4.3E-13 9.4E-18 83.5 7.6 77 27-106 10-90 (221)
55 KOG0147 Transcriptional coacti 99.5 2E-13 4.4E-18 93.7 6.3 74 29-102 281-354 (549)
56 KOG0124 Polypyrimidine tract-b 99.4 4.5E-13 9.8E-18 88.8 6.9 77 27-103 211-287 (544)
57 KOG0131 Splicing factor 3b, su 99.4 3.1E-13 6.7E-18 81.8 4.9 85 21-105 91-176 (203)
58 KOG0146 RNA-binding protein ET 99.4 3.4E-13 7.4E-18 86.2 5.2 86 20-105 279-364 (371)
59 KOG4212 RNA-binding protein hn 99.4 2E-12 4.4E-17 87.4 8.1 76 26-102 44-120 (608)
60 TIGR01642 U2AF_lg U2 snRNP aux 99.4 3.7E-12 8E-17 89.0 9.6 74 22-102 171-256 (509)
61 KOG0123 Polyadenylate-binding 99.4 2.9E-12 6.4E-17 86.5 8.7 95 4-104 57-151 (369)
62 KOG0110 RNA-binding protein (R 99.4 5.5E-13 1.2E-17 93.9 4.4 81 26-106 613-693 (725)
63 KOG0109 RNA-binding protein LA 99.4 1.6E-12 3.5E-17 83.8 5.7 70 27-104 3-72 (346)
64 KOG0153 Predicted RNA-binding 99.4 6.3E-12 1.4E-16 82.6 8.2 80 20-105 222-302 (377)
65 KOG0123 Polyadenylate-binding 99.3 6.6E-12 1.4E-16 84.8 8.0 73 28-106 3-75 (369)
66 KOG4208 Nucleolar RNA-binding 99.3 1.3E-11 2.8E-16 76.1 8.1 82 22-103 45-127 (214)
67 KOG0110 RNA-binding protein (R 99.3 1.5E-11 3.2E-16 86.9 8.1 78 26-104 515-596 (725)
68 KOG0109 RNA-binding protein LA 99.3 9.8E-12 2.1E-16 80.2 5.7 75 23-105 75-149 (346)
69 PF04059 RRM_2: RNA recognitio 99.3 1.5E-10 3.2E-15 64.4 9.2 79 26-104 1-85 (97)
70 KOG0132 RNA polymerase II C-te 99.2 3.1E-11 6.8E-16 86.1 7.3 74 25-104 420-493 (894)
71 KOG0146 RNA-binding protein ET 99.2 3.1E-11 6.8E-16 77.3 6.2 80 25-105 18-100 (371)
72 KOG0533 RRM motif-containing p 99.2 1.9E-10 4.1E-15 73.4 8.4 82 22-104 79-160 (243)
73 KOG4205 RNA-binding protein mu 99.2 3.5E-11 7.6E-16 79.3 4.6 80 25-105 5-84 (311)
74 KOG1457 RNA binding protein (c 99.2 6.1E-10 1.3E-14 69.8 9.7 86 21-106 29-118 (284)
75 KOG0116 RasGAP SH3 binding pro 99.1 2.1E-10 4.5E-15 78.3 7.5 78 26-104 288-365 (419)
76 KOG1548 Transcription elongati 99.1 5.5E-10 1.2E-14 73.6 8.8 82 22-104 130-219 (382)
77 KOG4212 RNA-binding protein hn 99.1 3.5E-10 7.5E-15 76.8 7.6 81 18-103 528-608 (608)
78 KOG4211 Splicing factor hnRNP- 99.1 5.2E-10 1.1E-14 76.5 8.4 80 22-105 6-85 (510)
79 KOG4661 Hsp27-ERE-TATA-binding 99.1 6.7E-10 1.4E-14 77.7 7.4 81 24-104 403-483 (940)
80 KOG4660 Protein Mei2, essentia 99.1 1.7E-10 3.7E-15 79.7 4.2 74 21-99 70-143 (549)
81 KOG4205 RNA-binding protein mu 99.0 5.4E-10 1.2E-14 73.8 5.8 79 26-105 97-175 (311)
82 KOG0151 Predicted splicing reg 98.9 5.2E-09 1.1E-13 74.6 8.0 84 21-104 169-255 (877)
83 KOG4209 Splicing factor RNPS1, 98.9 2.9E-09 6.3E-14 67.9 6.2 82 21-103 96-177 (231)
84 KOG0106 Alternative splicing f 98.9 2.6E-09 5.6E-14 67.1 4.1 70 27-104 2-71 (216)
85 KOG4211 Splicing factor hnRNP- 98.9 1.2E-08 2.7E-13 70.0 7.0 78 25-104 102-180 (510)
86 KOG4454 RNA binding protein (R 98.8 3.1E-09 6.8E-14 66.5 1.9 79 22-102 5-83 (267)
87 KOG0226 RNA-binding proteins [ 98.7 1.5E-08 3.2E-13 64.7 4.0 82 22-103 186-267 (290)
88 KOG0120 Splicing factor U2AF, 98.7 1.6E-08 3.5E-13 70.3 4.3 88 18-105 281-368 (500)
89 KOG1190 Polypyrimidine tract-b 98.7 1.9E-07 4E-12 63.2 8.1 74 26-104 297-371 (492)
90 PF11608 Limkain-b1: Limkain b 98.6 3.6E-07 7.7E-12 49.3 6.4 67 27-103 3-74 (90)
91 KOG0147 Transcriptional coacti 98.5 4.2E-08 9.2E-13 68.1 1.0 84 20-104 173-256 (549)
92 KOG4307 RNA binding protein RB 98.5 1.2E-06 2.6E-11 62.9 7.9 78 25-102 866-943 (944)
93 KOG4206 Spliceosomal protein s 98.4 3.7E-06 8E-11 52.9 7.7 78 23-105 143-221 (221)
94 KOG1365 RNA-binding protein Fu 98.4 6.7E-07 1.4E-11 60.3 4.5 83 21-104 275-360 (508)
95 KOG1457 RNA binding protein (c 98.3 7.6E-07 1.6E-11 56.2 4.0 65 26-94 210-274 (284)
96 PF08777 RRM_3: RNA binding mo 98.3 2.1E-06 4.6E-11 48.6 5.3 69 27-101 2-75 (105)
97 COG5175 MOT2 Transcriptional r 98.3 3.1E-06 6.7E-11 56.4 6.5 78 26-103 114-200 (480)
98 KOG0106 Alternative splicing f 98.3 9.6E-07 2.1E-11 55.7 3.3 75 23-105 96-170 (216)
99 KOG1995 Conserved Zn-finger pr 98.2 1.4E-06 3E-11 58.1 3.8 82 23-104 63-152 (351)
100 KOG2314 Translation initiation 98.2 2E-05 4.4E-10 55.6 8.9 79 22-101 54-139 (698)
101 KOG1365 RNA-binding protein Fu 98.1 2.8E-06 6E-11 57.4 3.1 72 26-99 161-236 (508)
102 KOG1456 Heterogeneous nuclear 98.1 6.3E-05 1.4E-09 50.9 8.9 69 33-106 129-199 (494)
103 KOG4210 Nuclear localization s 98.1 3.3E-06 7.1E-11 55.7 2.8 80 25-105 183-263 (285)
104 KOG3152 TBP-binding protein, a 98.0 2.4E-06 5.3E-11 54.7 1.9 73 25-97 73-157 (278)
105 PF05172 Nup35_RRM: Nup53/35/4 98.0 7.2E-05 1.6E-09 42.0 7.5 77 25-103 5-89 (100)
106 PF14605 Nup35_RRM_2: Nup53/35 98.0 2.3E-05 5E-10 39.0 5.0 52 27-85 2-53 (53)
107 KOG0129 Predicted RNA-binding 98.0 4.5E-05 9.8E-10 53.2 7.7 67 21-88 254-326 (520)
108 KOG0120 Splicing factor U2AF, 98.0 3.2E-05 7E-10 54.3 7.0 66 41-106 424-492 (500)
109 PF10309 DUF2414: Protein of u 98.0 9.3E-05 2E-09 37.9 6.7 56 25-88 4-62 (62)
110 KOG1548 Transcription elongati 98.0 6.5E-05 1.4E-09 50.2 7.5 76 24-103 263-349 (382)
111 PF08952 DUF1866: Domain of un 97.9 0.00012 2.5E-09 43.6 7.2 57 41-106 51-107 (146)
112 KOG0129 Predicted RNA-binding 97.9 9.3E-05 2E-09 51.7 7.7 67 21-87 365-432 (520)
113 KOG1190 Polypyrimidine tract-b 97.9 6.7E-05 1.5E-09 51.2 6.5 76 25-105 413-490 (492)
114 PF08675 RNA_bind: RNA binding 97.9 0.0002 4.3E-09 38.7 6.9 59 23-90 6-64 (87)
115 KOG4849 mRNA cleavage factor I 97.8 2.4E-05 5.3E-10 52.5 3.7 75 23-97 77-153 (498)
116 KOG0112 Large RNA-binding prot 97.7 6.7E-05 1.5E-09 55.4 4.3 78 22-105 451-530 (975)
117 KOG0105 Alternative splicing f 97.5 0.00068 1.5E-08 42.0 6.6 63 24-93 113-175 (241)
118 KOG1456 Heterogeneous nuclear 97.5 0.0013 2.9E-08 44.7 8.4 76 25-105 286-362 (494)
119 KOG1855 Predicted RNA-binding 97.5 0.00029 6.4E-09 48.4 4.9 72 20-91 225-309 (484)
120 KOG0128 RNA-binding protein SA 97.3 8.4E-05 1.8E-09 54.6 1.3 80 25-105 735-814 (881)
121 PF03467 Smg4_UPF3: Smg-4/UPF3 97.3 0.00083 1.8E-08 41.5 5.5 71 23-93 4-80 (176)
122 KOG4307 RNA binding protein RB 97.2 0.00027 5.9E-09 51.3 2.9 78 24-102 432-510 (944)
123 KOG2202 U2 snRNP splicing fact 97.0 0.00034 7.4E-09 45.1 1.4 62 41-103 83-145 (260)
124 KOG2193 IGF-II mRNA-binding pr 97.0 0.0012 2.7E-08 45.6 3.9 71 27-103 2-73 (584)
125 PF15023 DUF4523: Protein of u 97.0 0.012 2.6E-07 35.1 7.4 75 22-104 82-160 (166)
126 KOG0128 RNA-binding protein SA 96.9 3E-05 6.5E-10 56.8 -4.1 68 27-94 668-735 (881)
127 KOG1996 mRNA splicing factor [ 96.9 0.0071 1.5E-07 40.1 6.7 63 40-102 300-363 (378)
128 KOG2416 Acinus (induces apopto 96.9 0.0015 3.3E-08 46.8 3.7 78 22-105 440-521 (718)
129 KOG0115 RNA-binding protein p5 96.7 0.0029 6.4E-08 41.0 3.8 61 27-88 32-92 (275)
130 KOG4676 Splicing factor, argin 96.7 0.0064 1.4E-07 41.7 5.5 73 27-100 8-83 (479)
131 KOG4660 Protein Mei2, essentia 96.5 0.0085 1.8E-07 42.6 5.3 54 51-104 414-471 (549)
132 PF04847 Calcipressin: Calcipr 96.4 0.021 4.6E-07 35.6 6.1 60 39-104 8-69 (184)
133 PF07576 BRAP2: BRCA1-associat 96.4 0.077 1.7E-06 30.3 9.1 67 27-95 13-81 (110)
134 KOG0112 Large RNA-binding prot 96.3 0.00074 1.6E-08 50.2 -0.8 79 24-103 370-448 (975)
135 KOG2135 Proteins containing th 96.0 0.0042 9.1E-08 43.5 1.9 74 25-105 371-445 (526)
136 KOG2068 MOT2 transcription fac 95.6 0.0044 9.6E-08 41.5 0.8 78 25-102 76-159 (327)
137 KOG0804 Cytoplasmic Zn-finger 95.4 0.15 3.2E-06 35.9 7.3 68 25-94 73-141 (493)
138 PF03880 DbpA: DbpA RNA bindin 94.7 0.29 6.3E-06 25.7 6.8 67 28-103 2-74 (74)
139 KOG2591 c-Mpl binding protein, 94.0 0.15 3.3E-06 36.8 4.8 70 25-101 174-247 (684)
140 PF11767 SET_assoc: Histone ly 93.9 0.45 9.8E-06 24.6 6.3 54 38-100 12-65 (66)
141 KOG4285 Mitotic phosphoprotein 93.9 0.4 8.6E-06 32.2 6.3 62 28-97 199-260 (350)
142 KOG4574 RNA-binding protein (c 93.8 0.055 1.2E-06 40.7 2.5 73 26-104 298-372 (1007)
143 KOG2253 U1 snRNP complex, subu 92.6 0.13 2.8E-06 37.7 2.9 70 22-100 36-105 (668)
144 KOG4483 Uncharacterized conser 92.6 0.52 1.1E-05 32.9 5.5 59 22-87 387-446 (528)
145 PF15513 DUF4651: Domain of un 90.3 0.96 2.1E-05 23.1 3.8 21 41-61 9-29 (62)
146 KOG4210 Nuclear localization s 89.7 0.23 4.9E-06 33.1 1.7 75 25-99 87-161 (285)
147 PF07530 PRE_C2HC: Associated 89.7 0.93 2E-05 23.6 3.7 62 41-105 2-64 (68)
148 KOG4676 Splicing factor, argin 87.6 0.027 5.8E-07 38.8 -3.7 66 24-94 149-214 (479)
149 KOG4410 5-formyltetrahydrofola 86.0 3.1 6.8E-05 28.0 5.1 46 26-77 330-376 (396)
150 smart00596 PRE_C2HC PRE_C2HC d 84.8 2 4.3E-05 22.5 3.1 61 41-104 2-63 (69)
151 KOG2318 Uncharacterized conser 84.4 8.1 0.00018 28.6 6.9 74 24-97 172-297 (650)
152 PF07292 NID: Nmi/IFP 35 domai 76.6 2 4.3E-05 23.6 1.5 25 24-48 50-74 (88)
153 TIGR02542 B_forsyth_147 Bacter 74.3 6.4 0.00014 22.9 3.2 61 19-82 70-133 (145)
154 KOG2193 IGF-II mRNA-binding pr 71.4 0.091 2E-06 36.8 -5.4 75 25-102 79-153 (584)
155 KOG4019 Calcineurin-mediated s 67.6 5.8 0.00013 24.9 2.2 73 26-104 10-88 (193)
156 PF03468 XS: XS domain; Inter 67.1 22 0.00048 20.5 5.3 45 39-86 30-75 (116)
157 KOG2891 Surface glycoprotein [ 65.7 12 0.00026 25.2 3.6 40 21-60 144-195 (445)
158 KOG1295 Nonsense-mediated deca 64.6 14 0.00031 25.8 3.8 69 25-93 6-77 (376)
159 COG5193 LHP1 La protein, small 63.7 3.7 7.9E-05 28.9 0.9 63 23-85 171-243 (438)
160 KOG4454 RNA binding protein (R 63.4 1.5 3.1E-05 28.4 -0.9 66 26-92 80-149 (267)
161 KOG2295 C2H2 Zn-finger protein 63.2 0.76 1.6E-05 33.4 -2.4 71 25-95 230-300 (648)
162 PF10567 Nab6_mRNP_bdg: RNA-re 62.8 29 0.00062 23.6 4.8 59 25-83 14-79 (309)
163 PF02714 DUF221: Domain of unk 62.1 12 0.00027 25.0 3.3 22 71-92 1-22 (325)
164 COG0724 RNA-binding proteins ( 57.3 22 0.00048 22.3 3.7 64 22-85 221-284 (306)
165 PF03439 Spt5-NGN: Early trans 54.6 29 0.00064 18.6 3.4 26 67-92 43-68 (84)
166 COG5507 Uncharacterized conser 50.5 31 0.00067 19.5 3.0 24 65-88 63-86 (117)
167 KOG4008 rRNA processing protei 48.6 20 0.00044 23.5 2.4 33 21-53 35-67 (261)
168 KOG4213 RNA-binding protein La 48.2 36 0.00079 21.5 3.4 56 26-86 111-168 (205)
169 PHA01632 hypothetical protein 45.9 23 0.00051 17.7 1.9 21 29-49 19-39 (64)
170 PRK14548 50S ribosomal protein 43.2 56 0.0012 17.8 5.2 55 30-87 24-80 (84)
171 TIGR03636 L23_arch archaeal ri 42.1 55 0.0012 17.4 5.3 56 29-87 16-73 (77)
172 PF11411 DNA_ligase_IV: DNA li 42.1 22 0.00047 16.1 1.3 16 36-51 19-34 (36)
173 PF02946 GTF2I: GTF2I-like rep 41.3 58 0.0013 17.4 3.4 31 26-56 34-72 (76)
174 PF15063 TC1: Thyroid cancer p 37.3 26 0.00057 18.7 1.4 29 25-53 24-52 (79)
175 PF14893 PNMA: PNMA 35.7 31 0.00068 23.8 1.9 26 24-49 16-41 (331)
176 PRK11901 hypothetical protein; 33.9 1.6E+02 0.0035 20.4 6.1 65 22-90 241-306 (327)
177 PRK01178 rps24e 30S ribosomal 33.3 94 0.002 17.5 5.1 47 37-84 30-81 (99)
178 PRK10905 cell division protein 32.0 1.8E+02 0.0038 20.2 6.2 69 18-90 239-308 (328)
179 KOG3424 40S ribosomal protein 31.1 1.2E+02 0.0025 17.9 5.1 46 37-83 34-84 (132)
180 PF15407 Spo7_2_N: Sporulation 31.0 24 0.00053 18.3 0.6 20 23-42 24-43 (67)
181 PF13046 DUF3906: Protein of u 29.4 90 0.002 16.1 2.6 32 40-73 32-63 (64)
182 PF10281 Ish1: Putative stress 29.4 49 0.0011 14.7 1.5 16 37-52 3-18 (38)
183 PF00054 Laminin_G_1: Laminin 28.7 18 0.0004 20.8 -0.0 11 25-35 91-101 (131)
184 PF14111 DUF4283: Domain of un 27.6 42 0.00091 19.6 1.4 30 29-58 107-137 (153)
185 PF11823 DUF3343: Protein of u 26.6 1E+02 0.0022 15.8 2.9 24 70-93 3-26 (73)
186 COG0030 KsgA Dimethyladenosine 25.2 1.3E+02 0.0029 20.0 3.5 28 26-53 95-122 (259)
187 PF09902 DUF2129: Uncharacteri 24.6 1.2E+02 0.0026 15.9 4.1 38 46-92 16-53 (71)
188 PRK02302 hypothetical protein; 24.1 1.4E+02 0.003 16.5 4.1 38 46-92 22-59 (89)
189 smart00457 MACPF membrane-atta 23.2 43 0.00093 20.8 0.9 28 31-58 30-59 (194)
190 PF03108 DBD_Tnp_Mut: MuDR fam 23.2 90 0.002 15.6 2.0 15 74-88 9-23 (67)
191 PF12623 Hen1_L: RNA repair, l 23.1 2.3E+02 0.0051 18.7 4.5 63 26-88 118-183 (245)
192 PF09341 Pcc1: Transcription f 23.0 1.3E+02 0.0027 15.6 4.3 19 70-88 4-22 (76)
193 PF13600 DUF4140: N-terminal d 23.0 49 0.0011 18.3 1.0 21 24-44 21-41 (104)
194 KOG0156 Cytochrome P450 CYP2 s 21.7 2.6E+02 0.0056 20.5 4.6 58 31-98 37-97 (489)
195 PF05573 NosL: NosL; InterPro 20.5 2.1E+02 0.0044 17.1 3.4 22 67-88 113-134 (149)
196 cd00027 BRCT Breast Cancer Sup 20.5 1.2E+02 0.0025 14.3 3.1 26 27-52 2-27 (72)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.87 E-value=3.9e-21 Score=114.46 Aligned_cols=82 Identities=56% Similarity=0.910 Sum_probs=77.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|+..|++..+.|++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 45778999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cc
Q 033994 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 54
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.82 E-value=2.1e-19 Score=120.12 Aligned_cols=79 Identities=38% Similarity=0.581 Sum_probs=75.8
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
...|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..|||..++|+.|+|.|+.
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 4579999999999999999999999999999999999899999999999999999999999999999999999999964
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.82 E-value=3.1e-19 Score=119.34 Aligned_cols=81 Identities=36% Similarity=0.629 Sum_probs=77.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
...+|||+|||..+++++|+++|+.||+|..+.+++++.++.++|||||+|.+.++|++|+..|++..+.|++|+|.+++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36789999999999999999999999999999999998899999999999999999999999999999999999999876
Q ss_pred c
Q 033994 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 82 ~ 82 (352)
T TIGR01661 82 P 82 (352)
T ss_pred c
Confidence 4
No 4
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=4.9e-19 Score=110.83 Aligned_cols=82 Identities=30% Similarity=0.496 Sum_probs=79.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
.+..+|.|.||+.++++++|+++|.+||.|..+.+.+++.+|.++|||||.|.+.++|++|+..|+|.-.++--|+|+||
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 033994 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
+|
T Consensus 267 kP 268 (270)
T KOG0122|consen 267 KP 268 (270)
T ss_pred CC
Confidence 87
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.81 E-value=1.3e-18 Score=91.54 Aligned_cols=70 Identities=43% Similarity=0.792 Sum_probs=66.5
Q ss_pred EEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 033994 29 LFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 29 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
|||+|||.++++++|+++|+.||.+..+.+..+ .++..+++|||+|.+.++|+.|++.+++..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 4788999999999999999999999999999999886
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.81 E-value=4.7e-19 Score=118.31 Aligned_cols=84 Identities=35% Similarity=0.539 Sum_probs=79.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||++||+++++++|+++|+.+|+|..+.++.+..++..+|||||+|.+.++|++|+..|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccc
Q 033994 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++++
T Consensus 183 ~a~p 186 (346)
T TIGR01659 183 YARP 186 (346)
T ss_pred cccc
Confidence 9864
No 7
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.77 E-value=2e-17 Score=87.31 Aligned_cols=70 Identities=37% Similarity=0.686 Sum_probs=64.4
Q ss_pred EEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 033994 29 LFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 29 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
|||+|||+.+++++|+++|+.+|.|..+.+...+. +..+++|||+|.+.++|..|+..+++..+.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 78999999999999999999999999999999875 88999999999999999999999999999999885
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.75 E-value=1.6e-17 Score=110.97 Aligned_cols=82 Identities=28% Similarity=0.574 Sum_probs=75.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCC--eEEEEE
Q 033994 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG--RNIRVN 101 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~--~~l~v~ 101 (106)
...++|||+|||..+++++|+++|++||.|..+.++++..+++.++++||+|.+.++|++|++.|++..+.+ ++|+|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 346789999999999999999999999999999999998899999999999999999999999999998866 689998
Q ss_pred eccc
Q 033994 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++..
T Consensus 271 ~a~~ 274 (346)
T TIGR01659 271 LAEE 274 (346)
T ss_pred ECCc
Confidence 8753
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.75 E-value=2.5e-17 Score=115.91 Aligned_cols=80 Identities=25% Similarity=0.468 Sum_probs=76.2
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.+.+++.+++.+|||||+|.+.++|..|+..||++.++|+.|+|.++-
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 35789999999999999999999999999999999998888999999999999999999999999999999999999874
No 10
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.74 E-value=7.5e-18 Score=105.04 Aligned_cols=78 Identities=45% Similarity=0.777 Sum_probs=71.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
.-++|||++|+|.+..++|+++|+.||+|.+..++.|+.+++++||+||.|++.++|.+||+. ....|+||+..+.+|
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 356899999999999999999999999999999999999999999999999999999999984 556789998777665
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.74 E-value=3.3e-17 Score=115.49 Aligned_cols=79 Identities=37% Similarity=0.630 Sum_probs=75.4
Q ss_pred eEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecccC
Q 033994 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHKD 106 (106)
Q Consensus 28 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~~~ 106 (106)
.|||+|||.++++++|+++|+.+|.|..+.+.++..+++++|||||+|.+.++|++|+..+++..+.|+.|+|.|+.+|
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 6999999999999999999999999999999999988999999999999999999999999999999999999998653
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.73 E-value=3.6e-17 Score=115.15 Aligned_cols=80 Identities=30% Similarity=0.634 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||+++++++|+++|+.||.|..+.+..++.+++++|||||+|.+.++|+.|++.|||..++|+.|+|.++
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999999764
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.73 E-value=5.7e-17 Score=113.76 Aligned_cols=100 Identities=27% Similarity=0.425 Sum_probs=84.9
Q ss_pred cccCCceeeccCccccccccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHH
Q 033994 2 QWLNGSVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAA 81 (106)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a 81 (106)
..+++...+..++..+. ...+...++|||+|||+++++++|+++|+.+|.|..+.++++ .++.++|||||+|.+.++|
T Consensus 35 ~~~~g~r~~g~Pp~~~~-~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A 112 (578)
T TIGR01648 35 VQENGQRKYGGPPPGWS-GVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEA 112 (578)
T ss_pred cccCCcccCCCCCCccc-CCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHH
Confidence 34566667776666543 444567899999999999999999999999999999999999 5899999999999999999
Q ss_pred HHHHHHhCCeeeC-CeEEEEEec
Q 033994 82 GEAIKEMDGLLLD-GRNIRVNYA 103 (106)
Q Consensus 82 ~~al~~l~~~~~~-~~~l~v~~a 103 (106)
++|++.|++..+. ++.|.|.++
T Consensus 113 ~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 113 KEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred HHHHHHcCCCeecCCcccccccc
Confidence 9999999999884 677766655
No 14
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=4.9e-17 Score=104.42 Aligned_cols=80 Identities=36% Similarity=0.709 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
+.=+||||+.|+.++++.+|++.|+.||+|..|.++++..+|+++|||||+|++.-++.+|-+..+|+.|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999874
No 15
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=3e-17 Score=94.10 Aligned_cols=81 Identities=27% Similarity=0.518 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 033994 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
...+++|||+||...+++++|.++|+..|+|+.+-.-.++.+..+.||+||+|.+.++|+.|++.+++..++.+.|++.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34578999999999999999999999999999998888887888899999999999999999999999999999999988
Q ss_pred c
Q 033994 103 A 103 (106)
Q Consensus 103 a 103 (106)
-
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 4
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.71 E-value=1.9e-16 Score=110.44 Aligned_cols=81 Identities=25% Similarity=0.475 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||..+++++|+++|+.||.|..+.++.+..+|..+|||||+|.+.++|..|+..|++..++|++|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999888999999999999999999999999999999999999987
Q ss_pred c
Q 033994 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
.
T Consensus 373 ~ 373 (509)
T TIGR01642 373 C 373 (509)
T ss_pred c
Confidence 4
No 17
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.71 E-value=1.3e-16 Score=101.80 Aligned_cols=75 Identities=17% Similarity=0.292 Sum_probs=69.4
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
.++|||+|||+.+++++|+++|+.||.|..+.++.+.. .+|||||+|.+.++++.|+. |++..+.|+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 57899999999999999999999999999999987753 46899999999999999996 99999999999999874
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.71 E-value=1.9e-16 Score=109.17 Aligned_cols=79 Identities=38% Similarity=0.720 Sum_probs=75.8
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
.++|||+|||..+++++|+++|+.||.|..+.+..+..+|..+|||||+|.+.++|..|+..|+|..+.|+.|.|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 5899999999999999999999999999999999998888999999999999999999999999999999999999964
No 19
>smart00362 RRM_2 RNA recognition motif.
Probab=99.69 E-value=5.4e-16 Score=81.07 Aligned_cols=72 Identities=43% Similarity=0.724 Sum_probs=66.4
Q ss_pred eEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 033994 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 28 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
+|+|+|||..++.++|+++|..+|.+..+.+..+. +..++++||+|.+.+.|+.|+..+++..+.|++++|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999888765 6678999999999999999999999999999998873
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.69 E-value=4.7e-16 Score=107.27 Aligned_cols=82 Identities=26% Similarity=0.420 Sum_probs=76.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.+...++|||+|||..+++++|+++|+.+|.|..+.++.+..++..+|||||+|.+.++|++|+. +++..+.|+.|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 33457899999999999999999999999999999999998899999999999999999999997 89999999999998
Q ss_pred ecc
Q 033994 102 YAH 104 (106)
Q Consensus 102 ~a~ 104 (106)
++.
T Consensus 164 ~~~ 166 (457)
T TIGR01622 164 SSQ 166 (457)
T ss_pred ecc
Confidence 764
No 21
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=3.3e-16 Score=105.18 Aligned_cols=96 Identities=26% Similarity=0.434 Sum_probs=83.1
Q ss_pred ceeeccCccccccccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHH
Q 033994 7 SVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIK 86 (106)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~ 86 (106)
+..+.-++.. +....+...+.|||++||.++.+++|.-+|++.|+|-++++++++.+|.++|||||.|++.+.|+.|++
T Consensus 65 qrk~ggPpP~-weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik 143 (506)
T KOG0117|consen 65 QRKYGGPPPG-WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIK 143 (506)
T ss_pred ccccCCCCCc-ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHH
Confidence 3334444444 445566789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeee-CCeEEEEEec
Q 033994 87 EMDGLLL-DGRNIRVNYA 103 (106)
Q Consensus 87 ~l~~~~~-~~~~l~v~~a 103 (106)
.||+.+| .|+.|.|..|
T Consensus 144 ~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 144 ELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred HhhCccccCCCEeEEEEe
Confidence 9999987 5777777665
No 22
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=2.3e-16 Score=100.12 Aligned_cols=84 Identities=37% Similarity=0.653 Sum_probs=80.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....+.|.|.-||..+++++++.+|...|+|+.|++++|+-+|.+.||+||.|.++++|++|+..|||..+.++.|+|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 033994 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
||+|
T Consensus 117 yARP 120 (360)
T KOG0145|consen 117 YARP 120 (360)
T ss_pred eccC
Confidence 9986
No 23
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=1.6e-16 Score=103.23 Aligned_cols=84 Identities=27% Similarity=0.568 Sum_probs=75.7
Q ss_pred ccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 033994 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
.+.+...++|+|+|||+...+.||+..|.+||+|..+.|+.. ...++||+||.|++.++|++|-..|||..|.||+|+
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 345566889999999999999999999999999999999875 355789999999999999999999999999999999
Q ss_pred EEeccc
Q 033994 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|..+.+
T Consensus 168 Vn~ATa 173 (376)
T KOG0125|consen 168 VNNATA 173 (376)
T ss_pred Eeccch
Confidence 987643
No 24
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=2.2e-16 Score=94.76 Aligned_cols=76 Identities=30% Similarity=0.528 Sum_probs=70.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+||+..+++.+|+..|..||++..+.+... +.|||||+|++..+|+.|+..|+|..|.|.+|+|+.+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34789999999999999999999999999999988664 4689999999999999999999999999999999987
Q ss_pred c
Q 033994 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
.
T Consensus 83 ~ 83 (195)
T KOG0107|consen 83 T 83 (195)
T ss_pred c
Confidence 5
No 25
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.68 E-value=1.3e-16 Score=98.15 Aligned_cols=83 Identities=39% Similarity=0.633 Sum_probs=78.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.-..-..|.|-||..-++.++|+.+|++||.|-.+.|.+++.++..+|||||.|.+..+|+.|+.+|+|.+++|+.|+|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 33456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q 033994 102 YAH 104 (106)
Q Consensus 102 ~a~ 104 (106)
.|+
T Consensus 89 ~ar 91 (256)
T KOG4207|consen 89 MAR 91 (256)
T ss_pred hhh
Confidence 875
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.68 E-value=6.6e-16 Score=108.97 Aligned_cols=81 Identities=33% Similarity=0.620 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
....+|||+||+..+++++|+++|+.||.|..+.++.+. ++..+|+|||+|.+.++|.+|+..+|+..++|++|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~-~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE-KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC-CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 345779999999999999999999999999999999984 8889999999999999999999999999999999999998
Q ss_pred cc
Q 033994 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 362 ~~ 363 (562)
T TIGR01628 362 QR 363 (562)
T ss_pred cC
Confidence 64
No 27
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=8.3e-16 Score=85.23 Aligned_cols=82 Identities=23% Similarity=0.390 Sum_probs=72.7
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 033994 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
-++...+-|||+|||++++.++..++|..||.|+.+++-.. ...+|-|||.|++..+|.+|+..|.|..+.++.+.|
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 44556788999999999999999999999999999999654 446789999999999999999999999999999998
Q ss_pred Eeccc
Q 033994 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
-+-.+
T Consensus 90 lyyq~ 94 (124)
T KOG0114|consen 90 LYYQP 94 (124)
T ss_pred EecCH
Confidence 87543
No 28
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=7.4e-17 Score=100.19 Aligned_cols=84 Identities=38% Similarity=0.641 Sum_probs=80.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 033994 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
....++|||++|..++++.-|...|-+||.|..++++.+-.+++++||+||+|...++|.+|+.-||+.++.|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 033994 103 AHKD 106 (106)
Q Consensus 103 a~~~ 106 (106)
|+|.
T Consensus 87 AkP~ 90 (298)
T KOG0111|consen 87 AKPE 90 (298)
T ss_pred cCCc
Confidence 9874
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=5.8e-16 Score=98.54 Aligned_cols=80 Identities=41% Similarity=0.730 Sum_probs=76.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~~ 105 (106)
-..++|+-|..+++.++|++.|.+||+|+++++++|..+++++||+||.|...++|+.|+..|+|..|++|.|+..||.+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999854
No 30
>smart00360 RRM RNA recognition motif.
Probab=99.66 E-value=1.6e-15 Score=78.93 Aligned_cols=71 Identities=38% Similarity=0.725 Sum_probs=65.9
Q ss_pred EcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 033994 31 IGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 31 v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
|+|||..+++++|+++|+.+|.+..+.+...+.++..+++|||+|.+.++|..|+..+++..+.|++++|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999998887678889999999999999999999999999999998873
No 31
>PLN03213 repressor of silencing 3; Provisional
Probab=99.66 E-value=1.1e-15 Score=104.29 Aligned_cols=79 Identities=19% Similarity=0.437 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCH--HHHHHHHHHhCCeeeCCeEEEE
Q 033994 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASE--AAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~--~~a~~al~~l~~~~~~~~~l~v 100 (106)
.....+|||+||++.+++++|+..|+.||.|..+.+++. +| +|||||+|... .++.+|+..|+|..+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 345688999999999999999999999999999999844 45 89999999976 7899999999999999999999
Q ss_pred Eeccc
Q 033994 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
..|++
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 99875
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.7e-15 Score=96.47 Aligned_cols=76 Identities=29% Similarity=0.621 Sum_probs=71.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 033994 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
....++||++||+..++++.+++.|++||+|.++++..++ ||+||.|.+.+.|.+|+..+|+.+|.|+.+++.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 3457999999999999999999999999999999998875 8999999999999999999999999999999999
Q ss_pred cc
Q 033994 103 AH 104 (106)
Q Consensus 103 a~ 104 (106)
.+
T Consensus 235 GK 236 (321)
T KOG0148|consen 235 GK 236 (321)
T ss_pred cc
Confidence 65
No 33
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.65 E-value=3.5e-15 Score=94.15 Aligned_cols=75 Identities=19% Similarity=0.217 Sum_probs=68.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...+|+|+||++.+++++|++||+.+|.|..+.++++. ...++|||+|.+.++++.|+. |+|..|.++.|.|...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 46899999999999999999999999999999998874 345799999999999999996 9999999999988763
No 34
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=2.8e-17 Score=99.25 Aligned_cols=78 Identities=32% Similarity=0.654 Sum_probs=74.7
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
.+--|||+|||+++|+.+|.-+|+.||.|..+.++++..+|+++||||+.|++..+..-|+.-|||+.|.|+.|+|..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 456799999999999999999999999999999999999999999999999999999999999999999999999986
No 35
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.64 E-value=9.4e-16 Score=104.48 Aligned_cols=79 Identities=34% Similarity=0.771 Sum_probs=76.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 033994 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~~ 105 (106)
+.+||+|+|+++++++|..+|+..|.|..++++.|+.+|+.+||+|++|.+.++++.|++.|++.++.|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999754
No 36
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.63 E-value=1.5e-14 Score=75.91 Aligned_cols=74 Identities=35% Similarity=0.717 Sum_probs=67.8
Q ss_pred eEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 033994 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 28 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
+|+|+|||..+++++++++|+.+|.+..+.+..++.+ ..++++||+|.+.++|+.|+..+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4789999999999999999999999999999877633 6789999999999999999999999999999999874
No 37
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.62 E-value=6.4e-15 Score=94.26 Aligned_cols=79 Identities=43% Similarity=0.782 Sum_probs=75.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
.++|||+|||.++++++|+++|..+|.+..+.+..++.++..+|+|||+|.+.+++..|+..+++..+.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5999999999999999999999999999999999998889999999999999999999999999999999999999853
No 38
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.60 E-value=1.5e-14 Score=100.68 Aligned_cols=76 Identities=22% Similarity=0.352 Sum_probs=70.1
Q ss_pred CCceEEEcCCCC-CCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 25 SRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...+|||+|||+ .+++++|+++|+.||.|..+.++.++ +|+|||+|.+.++|+.|+..|++..+.|++|+|.++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 467999999998 69999999999999999999998763 589999999999999999999999999999999988
Q ss_pred cc
Q 033994 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
+.
T Consensus 349 ~~ 350 (481)
T TIGR01649 349 KQ 350 (481)
T ss_pred cc
Confidence 54
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.60 E-value=1.4e-14 Score=101.87 Aligned_cols=73 Identities=32% Similarity=0.560 Sum_probs=67.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhccc--CCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQH--GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
..++|||+|||.++++++|+++|+.| |.|..+.++ ++||||+|.+.++|++|+..||+..|.|+.|+|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 999998764 35999999999999999999999999999999999
Q ss_pred ccc
Q 033994 103 AHK 105 (106)
Q Consensus 103 a~~ 105 (106)
+++
T Consensus 304 Akp 306 (578)
T TIGR01648 304 AKP 306 (578)
T ss_pred ccC
Confidence 865
No 40
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.59 E-value=1.6e-14 Score=100.52 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=67.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHh--CCeeeCCeEEEEEec
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM--DGLLLDGRNIRVNYA 103 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l--~~~~~~~~~l~v~~a 103 (106)
+++|||+|||+++++++|+++|++||.|..+.++.+ +++|||+|.+.++|++|+..+ ++..+.|+.|+|.||
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 568999999999999999999999999999988753 369999999999999999864 778999999999998
Q ss_pred cc
Q 033994 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
..
T Consensus 76 ~~ 77 (481)
T TIGR01649 76 TS 77 (481)
T ss_pred CC
Confidence 53
No 41
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=4e-15 Score=86.17 Aligned_cols=79 Identities=29% Similarity=0.531 Sum_probs=75.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
..-.|+|.++-..+++++|.+.|..||+|.++.+..++.+|--+||++|+|.+.+.|++|+..+|+..+.|..|.|.|+
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 3567999999999999999999999999999999999889999999999999999999999999999999999999996
No 42
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=1.2e-14 Score=99.97 Aligned_cols=78 Identities=27% Similarity=0.570 Sum_probs=73.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
.-+|+|+|||+.+...+|+.+|+.||.|..+.|++.. .|+..|||||.|....+|..|+..+|+..|+|++|-|.||-
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 5689999999999999999999999999999999766 66667999999999999999999999999999999999983
No 43
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.57 E-value=7.1e-15 Score=88.84 Aligned_cols=83 Identities=37% Similarity=0.597 Sum_probs=78.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
+-+...+|||+||+..++++-|.++|-+.|+|..+.+++++-++...||||++|.++++|+=|++.|+...+.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred ecc
Q 033994 102 YAH 104 (106)
Q Consensus 102 ~a~ 104 (106)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 875
No 44
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.1e-14 Score=97.62 Aligned_cols=90 Identities=32% Similarity=0.545 Sum_probs=78.8
Q ss_pred cccccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCee-eCC
Q 033994 17 TRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL-LDG 95 (106)
Q Consensus 17 ~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~-~~~ 95 (106)
.....++.+.-++||+-||+.++|.+|+++|++||.|.+|.+++|+-++..+|+|||.|.+.++|.+|+.+||... +.|
T Consensus 25 ~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG 104 (510)
T KOG0144|consen 25 DHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG 104 (510)
T ss_pred CCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCC
Confidence 3334455667789999999999999999999999999999999999999999999999999999999999998876 444
Q ss_pred --eEEEEEecccC
Q 033994 96 --RNIRVNYAHKD 106 (106)
Q Consensus 96 --~~l~v~~a~~~ 106 (106)
+.|+|++|+.|
T Consensus 105 ~~~pvqvk~Ad~E 117 (510)
T KOG0144|consen 105 MHHPVQVKYADGE 117 (510)
T ss_pred CCcceeecccchh
Confidence 68999988653
No 45
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.7e-14 Score=87.63 Aligned_cols=78 Identities=27% Similarity=0.476 Sum_probs=69.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||.++.+.+|+++|.+||.|..|.+... .....||||+|++..+|+.|+..-++..++|.+|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35688999999999999999999999999999988433 224579999999999999999988999999999999987
Q ss_pred c
Q 033994 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
.
T Consensus 81 r 81 (241)
T KOG0105|consen 81 R 81 (241)
T ss_pred c
Confidence 5
No 46
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=3.2e-14 Score=95.77 Aligned_cols=73 Identities=37% Similarity=0.517 Sum_probs=68.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
....|||+||+.++|++.|++.|+.||.|..+..++| ||||+|.+.++|-+|++.+|+.+|+|..|.|.+|+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 3578999999999999999999999999999987644 99999999999999999999999999999999998
Q ss_pred c
Q 033994 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
|
T Consensus 330 P 330 (506)
T KOG0117|consen 330 P 330 (506)
T ss_pred C
Confidence 6
No 47
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.54 E-value=1.2e-13 Score=69.79 Aligned_cols=56 Identities=38% Similarity=0.746 Sum_probs=50.2
Q ss_pred HHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 43 LKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 43 l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
|.++|++||.|..+.+.... ++++||+|.+.++|+.|++.||+..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 57899999999999886543 579999999999999999999999999999999986
No 48
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=1.2e-14 Score=97.57 Aligned_cols=80 Identities=34% Similarity=0.604 Sum_probs=73.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCee-eCC--eEEEEE
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL-LDG--RNIRVN 101 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~-~~~--~~l~v~ 101 (106)
..++|||+.|++.+++.+++++|++||.|++|+++++. .+.++|++||.|...+-|..|++.||+.. +.| .+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 47899999999999999999999999999999999998 89999999999999999999999999986 554 589999
Q ss_pred eccc
Q 033994 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
||+.
T Consensus 202 FADt 205 (510)
T KOG0144|consen 202 FADT 205 (510)
T ss_pred eccc
Confidence 9864
No 49
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=2.1e-14 Score=95.10 Aligned_cols=77 Identities=31% Similarity=0.667 Sum_probs=74.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
-+++||+.|.+++.++.|+..|.+||+|..+..-.++.+++++||+||+|+-.+.|+-|++.||+..++|+.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999998864
No 50
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1e-13 Score=91.42 Aligned_cols=82 Identities=32% Similarity=0.548 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 033994 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
.+....|||..|.+-++.++|.-+|+.||+|..|.++++..+|....||||+|.+.+++++|.-.|++..|++++|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 033994 103 AH 104 (106)
Q Consensus 103 a~ 104 (106)
|.
T Consensus 316 SQ 317 (479)
T KOG0415|consen 316 SQ 317 (479)
T ss_pred hh
Confidence 74
No 51
>smart00361 RRM_1 RNA recognition motif.
Probab=99.48 E-value=5.5e-13 Score=70.38 Aligned_cols=62 Identities=24% Similarity=0.535 Sum_probs=54.2
Q ss_pred HHHHHHHhc----ccCCeeEEE-EeecCCC--CCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 033994 40 ETVLKDAFG----QHGEIIEVK-VICDRVT--GQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 40 ~~~l~~~f~----~~g~i~~~~-~~~~~~~--~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
+++|+++|+ .||.+..+. +..++.+ +..+|++||.|.+.++|++|+..|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 467888888 999999985 6666555 8889999999999999999999999999999999863
No 52
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=8.8e-13 Score=84.06 Aligned_cols=82 Identities=32% Similarity=0.535 Sum_probs=77.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.+...-.|||=||.++..+.-|+++|.+||.|..+++++|..+.+++||+||.+.+-++|..|+..|||..++++.++|.
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999998
Q ss_pred ec
Q 033994 102 YA 103 (106)
Q Consensus 102 ~a 103 (106)
+.
T Consensus 354 FK 355 (360)
T KOG0145|consen 354 FK 355 (360)
T ss_pred Ee
Confidence 74
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=6.8e-13 Score=91.47 Aligned_cols=82 Identities=38% Similarity=0.660 Sum_probs=73.9
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHh-----CC-eeeCC
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM-----DG-LLLDG 95 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l-----~~-~~~~~ 95 (106)
......+|||+|||+++++++|...|+.||.+....++.++.++.++|.|||.|.+...++.||..- .+ +.++|
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 3345689999999999999999999999999999999999999999999999999999999999854 23 66899
Q ss_pred eEEEEEec
Q 033994 96 RNIRVNYA 103 (106)
Q Consensus 96 ~~l~v~~a 103 (106)
+.|.|..+
T Consensus 368 R~Lkv~~A 375 (678)
T KOG0127|consen 368 RLLKVTLA 375 (678)
T ss_pred cEEeeeec
Confidence 99998875
No 54
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.46 E-value=4.3e-13 Score=83.47 Aligned_cols=77 Identities=31% Similarity=0.578 Sum_probs=70.6
Q ss_pred ceEEEcCCCCCCcHHHHHH----HhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 033994 27 TKLFIGGLSYDTNETVLKD----AFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~----~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
.||||.||+..+..++|++ +|++||.|..|.... +.+.+|-|||.|.+.+.|-.|++.|+|+.+.|+.++++|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3999999999999999888 999999999887743 677899999999999999999999999999999999999
Q ss_pred cccC
Q 033994 103 AHKD 106 (106)
Q Consensus 103 a~~~ 106 (106)
|+.|
T Consensus 87 A~s~ 90 (221)
T KOG4206|consen 87 AKSD 90 (221)
T ss_pred ccCc
Confidence 9764
No 55
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.45 E-value=2e-13 Score=93.71 Aligned_cols=74 Identities=34% Similarity=0.719 Sum_probs=71.8
Q ss_pred EEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 033994 29 LFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 29 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
|||+||-+++++.+++..|++||.|..+.+.++..+|.++||+||+|.+.++|.+|+..|||+++-|+.|+|..
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999875
No 56
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=4.5e-13 Score=88.83 Aligned_cols=77 Identities=26% Similarity=0.509 Sum_probs=73.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
.++||..+-++.++++|+..|+.||+|..|.+.+.+..+.++||+||+|.+..+...|+..||-+.++|..++|-.+
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 78999999999999999999999999999999999988889999999999999999999999999999999998653
No 57
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.42 E-value=3.1e-13 Score=81.82 Aligned_cols=85 Identities=36% Similarity=0.636 Sum_probs=77.1
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeE-EEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 033994 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
........+||+||.+++.+.-|.+.|+.||.+.. -.+++++.+|..++++||.|.+.+.+.+|+.++++..+.++++.
T Consensus 91 ~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~it 170 (203)
T KOG0131|consen 91 KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPIT 170 (203)
T ss_pred ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceE
Confidence 44455688999999999999999999999998644 58889988899999999999999999999999999999999999
Q ss_pred EEeccc
Q 033994 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|+++.+
T Consensus 171 v~ya~k 176 (203)
T KOG0131|consen 171 VSYAFK 176 (203)
T ss_pred EEEEEe
Confidence 999865
No 58
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=3.4e-13 Score=86.19 Aligned_cols=86 Identities=30% Similarity=0.490 Sum_probs=79.8
Q ss_pred ccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 033994 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
.-+..+.+.|||=.||.+..+.+|.+.|-+||.|...++..|+.+..+++|+||.|++..++++|+..|||+.|+.++++
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccc
Q 033994 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|++.+|
T Consensus 359 VQLKRP 364 (371)
T KOG0146|consen 359 VQLKRP 364 (371)
T ss_pred hhhcCc
Confidence 987654
No 59
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.40 E-value=2e-12 Score=87.38 Aligned_cols=76 Identities=26% Similarity=0.483 Sum_probs=71.3
Q ss_pred CceEEEcCCCCCCcHHHHHHHhc-ccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFG-QHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
.+.+||.|||+++...+|++++. +.|.|.++.++.+. +++.+|++.|+|++++.+++|++.|+.+++.|+.|.|+-
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 45599999999999999999996 67999999999997 899999999999999999999999999999999999975
No 60
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.39 E-value=3.7e-12 Score=89.03 Aligned_cols=74 Identities=16% Similarity=0.416 Sum_probs=60.7
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhccc------------CCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhC
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQH------------GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD 89 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~------------g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~ 89 (106)
.+...++|||+|||+.+++++|+++|..+ +.|..+.+ +..+|||||+|.+.++|+.||. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 34457899999999999999999999864 23333333 2346899999999999999995 99
Q ss_pred CeeeCCeEEEEEe
Q 033994 90 GLLLDGRNIRVNY 102 (106)
Q Consensus 90 ~~~~~~~~l~v~~ 102 (106)
++.+.|..|+|..
T Consensus 244 g~~~~g~~l~v~r 256 (509)
T TIGR01642 244 SIIYSNVFLKIRR 256 (509)
T ss_pred CeEeeCceeEecC
Confidence 9999999999864
No 61
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=2.9e-12 Score=86.48 Aligned_cols=95 Identities=35% Similarity=0.589 Sum_probs=77.3
Q ss_pred cCCceeeccCccccccccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHH
Q 033994 4 LNGSVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGE 83 (106)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 83 (106)
+|.......+.+..+....+ ..+||.||+++++..+|.++|+.||.|..|++..+. +| .+|| ||+|.+.+.|++
T Consensus 57 ~n~~~~~~~~~rim~s~rd~---~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ 130 (369)
T KOG0123|consen 57 MNFDVLKGKPIRIMWSQRDP---SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKK 130 (369)
T ss_pred cCCcccCCcEEEeehhccCC---ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHH
Confidence 44444444444444433222 229999999999999999999999999999999987 45 8889 999999999999
Q ss_pred HHHHhCCeeeCCeEEEEEecc
Q 033994 84 AIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 84 al~~l~~~~~~~~~l~v~~a~ 104 (106)
|+..+||..+.+++|.|....
T Consensus 131 ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 131 AIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred HHHHhcCcccCCCeeEEeecc
Confidence 999999999999999997653
No 62
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=5.5e-13 Score=93.88 Aligned_cols=81 Identities=23% Similarity=0.494 Sum_probs=75.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~~ 105 (106)
.+.|+|+|||+..+..+++++|..||.+..++++.....+.++|||||+|-++.+|.+|+..|..+.+.|+++.++||+.
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 56899999999999999999999999999999988754566799999999999999999999999999999999999976
Q ss_pred C
Q 033994 106 D 106 (106)
Q Consensus 106 ~ 106 (106)
|
T Consensus 693 d 693 (725)
T KOG0110|consen 693 D 693 (725)
T ss_pred c
Confidence 5
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.36 E-value=1.6e-12 Score=83.76 Aligned_cols=70 Identities=37% Similarity=0.678 Sum_probs=65.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 033994 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
.+|||+|||..+++.+|+.+|++||+|.+|.|+. .|+||..++...++.|++-|++..++|..|.|+.|+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEecc
Confidence 4699999999999999999999999999999974 499999999999999999999999999999999875
No 64
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=6.3e-12 Score=82.57 Aligned_cols=80 Identities=28% Similarity=0.549 Sum_probs=69.5
Q ss_pred ccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHH-HhCCeeeCCeEE
Q 033994 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIK-EMDGLLLDGRNI 98 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~-~l~~~~~~~~~l 98 (106)
.+++....+|||++|-..+++.+|+++|.+||.|+.+.+.... ++|||+|.+.+.|+.|.. .++...|+|.+|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 3445567899999999999999999999999999999987654 589999999999998885 456667999999
Q ss_pred EEEeccc
Q 033994 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~a~~ 105 (106)
.|.|+.+
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999865
No 65
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=6.6e-12 Score=84.78 Aligned_cols=73 Identities=34% Similarity=0.634 Sum_probs=69.3
Q ss_pred eEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecccC
Q 033994 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHKD 106 (106)
Q Consensus 28 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~~~ 106 (106)
.|||+ +++++..|.+.|+++|++..+++-++. + +.|||||.|.+..+|++|+..+|...+.|+++++.|+.+|
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 58888 999999999999999999999999998 6 8999999999999999999999999999999999999876
No 66
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.33 E-value=1.3e-11 Score=76.07 Aligned_cols=82 Identities=24% Similarity=0.395 Sum_probs=73.6
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhccc-CCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQH-GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......-+|+..+|....+.++..+|.++ |.+...++.+.+.+|.++|||||+|++.+.|.-|.+.||+..+.++-|.+
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 33456678999999999999999999988 67888888888889999999999999999999999999999999998888
Q ss_pred Eec
Q 033994 101 NYA 103 (106)
Q Consensus 101 ~~a 103 (106)
.+=
T Consensus 125 ~vm 127 (214)
T KOG4208|consen 125 HVM 127 (214)
T ss_pred EEe
Confidence 763
No 67
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=1.5e-11 Score=86.88 Aligned_cols=78 Identities=32% Similarity=0.647 Sum_probs=69.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCC----eeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ----SRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~----~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.++|||.|++++++.+++...|...|.|..+.|...+ +++ +.||+||+|.+.++|++|++.|+|..++|+.|.|+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3449999999999999999999999999999887665 332 45999999999999999999999999999999999
Q ss_pred ecc
Q 033994 102 YAH 104 (106)
Q Consensus 102 ~a~ 104 (106)
+|.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 986
No 68
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.28 E-value=9.8e-12 Score=80.21 Aligned_cols=75 Identities=29% Similarity=0.539 Sum_probs=69.2
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 033994 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
....++++|+||.+.++..+++..|.+||++.+|.++.+ |+||.|.-.++|..|++.|++.++.|++++|+.
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 345778999999999999999999999999999999754 899999999999999999999999999999998
Q ss_pred ccc
Q 033994 103 AHK 105 (106)
Q Consensus 103 a~~ 105 (106)
|..
T Consensus 147 sts 149 (346)
T KOG0109|consen 147 STS 149 (346)
T ss_pred ecc
Confidence 753
No 69
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.26 E-value=1.5e-10 Score=64.44 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=69.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcc--cCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeC----CeEEE
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQ--HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD----GRNIR 99 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~----~~~l~ 99 (106)
.+||.|+|||...+.+.|.+.+.. .|..-.+.++.|..++...|||||.|.+.+.+....+.++|..+. .+.+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 368999999999999999999864 367788899999989999999999999999999999999999864 45678
Q ss_pred EEecc
Q 033994 100 VNYAH 104 (106)
Q Consensus 100 v~~a~ 104 (106)
|.||+
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 87774
No 70
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.24 E-value=3.1e-11 Score=86.07 Aligned_cols=74 Identities=24% Similarity=0.519 Sum_probs=68.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
.++||||++|+..+++.+|...|+.||.|..|.++.. +++|||.+....+|.+|++.|....+.++.|++.|+-
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 4699999999999999999999999999999977543 5799999999999999999999999999999999973
No 71
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=3.1e-11 Score=77.34 Aligned_cols=80 Identities=33% Similarity=0.528 Sum_probs=71.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCee-eC--CeEEEEE
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL-LD--GRNIRVN 101 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~-~~--~~~l~v~ 101 (106)
+.++|||+.|.+.-.|++++++|.+||.+.+|.+.+.. +|..+|++||.|.+..+|++|+..|||-. +. +.-+.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 67899999999999999999999999999999999987 89999999999999999999999999875 33 3568888
Q ss_pred eccc
Q 033994 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
+++-
T Consensus 97 ~ADT 100 (371)
T KOG0146|consen 97 FADT 100 (371)
T ss_pred eccc
Confidence 7754
No 72
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.19 E-value=1.9e-10 Score=73.43 Aligned_cols=82 Identities=32% Similarity=0.528 Sum_probs=74.4
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.+..+.+|+|.|||..+...+|+++|..||.+..+.+.+++ +|.+.|.|-|.|...++|.++++.++++.++|+.+++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 44556889999999999999999999999988888888887 88889999999999999999999999999999999887
Q ss_pred ecc
Q 033994 102 YAH 104 (106)
Q Consensus 102 ~a~ 104 (106)
...
T Consensus 158 ~i~ 160 (243)
T KOG0533|consen 158 IIS 160 (243)
T ss_pred Eec
Confidence 753
No 73
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.17 E-value=3.5e-11 Score=79.34 Aligned_cols=80 Identities=40% Similarity=0.681 Sum_probs=71.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
..++++|++|+++++++.|+++|..||.+..+.+++++.++..+||+||.|.+.+...+++. ...+.|+|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999999999999999999999999888886 35667888888777654
Q ss_pred c
Q 033994 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 84 ~ 84 (311)
T KOG4205|consen 84 S 84 (311)
T ss_pred C
Confidence 3
No 74
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.17 E-value=6.1e-10 Score=69.80 Aligned_cols=86 Identities=17% Similarity=0.320 Sum_probs=68.1
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeec-CCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeC---Ce
Q 033994 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICD-RVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD---GR 96 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~---~~ 96 (106)
..+...+||||.+||.++...+|..+|..|..-+.+.+... +..+.++-++|+.|.+..+|++|+..|||+.++ +.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 34456899999999999999999999998855444444332 223345679999999999999999999999986 56
Q ss_pred EEEEEecccC
Q 033994 97 NIRVNYAHKD 106 (106)
Q Consensus 97 ~l~v~~a~~~ 106 (106)
.+++++++.+
T Consensus 109 tLhiElAKSN 118 (284)
T KOG1457|consen 109 TLHIELAKSN 118 (284)
T ss_pred eeEeeehhcC
Confidence 8888887653
No 75
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.15 E-value=2.1e-10 Score=78.30 Aligned_cols=78 Identities=28% Similarity=0.451 Sum_probs=67.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
..+|||.|||.+++..+|+++|..||.|....+....-.++..+|+||+|.+...++.++.+ +...++++++.|+.-+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 45699999999999999999999999999998876653455458999999999999999996 5788999999998643
No 76
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.14 E-value=5.5e-10 Score=73.61 Aligned_cols=82 Identities=24% Similarity=0.427 Sum_probs=72.5
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCee--------EEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeee
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEII--------EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 93 (106)
.+.....|||+|||.++|.+++.++|+.+|-|. .|.+.++. .|+.+|-|+|.|...+++.-|+..|++..+
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 344566799999999999999999999999763 36777776 699999999999999999999999999999
Q ss_pred CCeEEEEEecc
Q 033994 94 DGRNIRVNYAH 104 (106)
Q Consensus 94 ~~~~l~v~~a~ 104 (106)
.|++|+|+.|+
T Consensus 209 rg~~~rVerAk 219 (382)
T KOG1548|consen 209 RGKKLRVERAK 219 (382)
T ss_pred cCcEEEEehhh
Confidence 99999999875
No 77
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.13 E-value=3.5e-10 Score=76.80 Aligned_cols=81 Identities=32% Similarity=0.536 Sum_probs=70.5
Q ss_pred ccccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeE
Q 033994 18 RLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 18 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 97 (106)
.........++|+|+|||.+.|...|++-|..+|.+.+..+ . .+++.+| .|.|.+.++|+.|+..|++..++|+.
T Consensus 528 ~a~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadi-m--e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~ 602 (608)
T KOG4212|consen 528 NAVGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADI-M--ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRN 602 (608)
T ss_pred ccccccccccEEEEecCCccccHHHHHHHHHhccceehhhh-h--ccCCccc--eEEecCHHHHHHHHHHhccCcccCce
Confidence 33445556788999999999999999999999999998888 2 3566665 89999999999999999999999999
Q ss_pred EEEEec
Q 033994 98 IRVNYA 103 (106)
Q Consensus 98 l~v~~a 103 (106)
|.|.|.
T Consensus 603 I~V~y~ 608 (608)
T KOG4212|consen 603 IKVTYF 608 (608)
T ss_pred eeeeeC
Confidence 999873
No 78
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.12 E-value=5.2e-10 Score=76.51 Aligned_cols=80 Identities=25% Similarity=0.386 Sum_probs=67.9
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
+......|.+++|||++|+++|++||+..+ |..+.+.+. +|+..|-|||+|.+.+++++|++ .+...++.+.|.|.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 444567788899999999999999999875 777666554 78999999999999999999998 48888999999998
Q ss_pred eccc
Q 033994 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
-+.+
T Consensus 82 ~~~~ 85 (510)
T KOG4211|consen 82 TAGG 85 (510)
T ss_pred ccCC
Confidence 7643
No 79
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.07 E-value=6.7e-10 Score=77.67 Aligned_cols=81 Identities=32% Similarity=0.507 Sum_probs=74.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...+.|||++|...+...+|+.+|++||+|....++....+...++|+||.+.+..+|.+||..|+..++.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34688999999999999999999999999999988877667778899999999999999999999999999999999987
Q ss_pred c
Q 033994 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
+
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 5
No 80
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=1.7e-10 Score=79.71 Aligned_cols=74 Identities=27% Similarity=0.404 Sum_probs=65.4
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 033994 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
+..-.+.+|+|-|||..++.++|++.|+.||+|+.++- +...++..||+|.|..+|++|++.|++.++.|++++
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 33456899999999999999999999999999999644 455678999999999999999999999999888776
No 81
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.04 E-value=5.4e-10 Score=73.80 Aligned_cols=79 Identities=34% Similarity=0.595 Sum_probs=72.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~~ 105 (106)
..+++|++||.++++.+++++|.+||.|..+.++.+..+...++|+||.|.+.+++.+++. ..-+.+.++.+.|..|-|
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 4589999999999999999999999999999999999999999999999999999999997 467789999999988755
No 82
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.95 E-value=5.2e-09 Score=74.56 Aligned_cols=84 Identities=27% Similarity=0.566 Sum_probs=73.2
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCC---CCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeE
Q 033994 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVT---GQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 97 (106)
...+..+.+||+||++.++++.|..-|..||++..++++..+.. ...+.++||-|.+..++++|+..|+|..+.+..
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 33456788999999999999999999999999988888765532 335679999999999999999999999999999
Q ss_pred EEEEecc
Q 033994 98 IRVNYAH 104 (106)
Q Consensus 98 l~v~~a~ 104 (106)
+++-|++
T Consensus 249 ~K~gWgk 255 (877)
T KOG0151|consen 249 MKLGWGK 255 (877)
T ss_pred eeecccc
Confidence 9999985
No 83
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.95 E-value=2.9e-09 Score=67.93 Aligned_cols=82 Identities=26% Similarity=0.440 Sum_probs=75.5
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 033994 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......+.+||+|+.+.++.+++...|+.+|.+..+.+..+...+.++||+||+|.+.+.++.++. |++..+.+..+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 455667899999999999999999999999999999999998888899999999999999999999 9999999999988
Q ss_pred Eec
Q 033994 101 NYA 103 (106)
Q Consensus 101 ~~a 103 (106)
.+-
T Consensus 175 t~~ 177 (231)
T KOG4209|consen 175 TLK 177 (231)
T ss_pred eee
Confidence 864
No 84
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=2.6e-09 Score=67.08 Aligned_cols=70 Identities=30% Similarity=0.578 Sum_probs=63.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 033994 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
..+||++||+.+.+.++.++|..||.+..+.+. .||+||+|.+..+|..|+..+++..+.+-++.|+++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 368999999999999999999999999988663 3588999999999999999999999999889998876
No 85
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.86 E-value=1.2e-08 Score=69.96 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=64.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeE-EEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
....|.+++||+.+++++|.+||+..--+.. +.++.+. .++..|-|||+|++.+.++.|++. |...|+.+.|.|..|
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 4567999999999999999999997654433 4455555 677889999999999999999985 777788888988765
Q ss_pred c
Q 033994 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 86
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=3.1e-09 Score=66.46 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=70.6
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||.|+-..++++-|.++|-..|+|..+.|..+. +++.+ ||||.|.++.+.+-|++.+||..+.+..+++.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 34567899999999999999999999999999999887776 77777 99999999999999999999999999887776
Q ss_pred e
Q 033994 102 Y 102 (106)
Q Consensus 102 ~ 102 (106)
.
T Consensus 83 ~ 83 (267)
T KOG4454|consen 83 L 83 (267)
T ss_pred c
Confidence 5
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.73 E-value=1.5e-08 Score=64.67 Aligned_cols=82 Identities=34% Similarity=0.567 Sum_probs=73.7
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
-+....+||.+-|-.+++.+-+-+.|.+|-.-....+++++-+++.+||+||.|.+..++..|++.|+|..++++.|+++
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 34567889999999999999999999999877777889998899999999999999999999999999999999988776
Q ss_pred ec
Q 033994 102 YA 103 (106)
Q Consensus 102 ~a 103 (106)
.+
T Consensus 266 kS 267 (290)
T KOG0226|consen 266 KS 267 (290)
T ss_pred hh
Confidence 53
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=1.6e-08 Score=70.25 Aligned_cols=88 Identities=24% Similarity=0.481 Sum_probs=79.7
Q ss_pred ccccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeE
Q 033994 18 RLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 18 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 97 (106)
..+..+.....++|++||...++.++++.+..||++....++.+..+|-++||+|.+|.+......|+..|||+.+++++
T Consensus 281 ~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~ 360 (500)
T KOG0120|consen 281 ASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKK 360 (500)
T ss_pred cccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCce
Confidence 33455567889999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred EEEEeccc
Q 033994 98 IRVNYAHK 105 (106)
Q Consensus 98 l~v~~a~~ 105 (106)
+.|+.|-.
T Consensus 361 lvvq~A~~ 368 (500)
T KOG0120|consen 361 LVVQRAIV 368 (500)
T ss_pred eEeehhhc
Confidence 99987643
No 89
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.67 E-value=1.9e-07 Score=63.23 Aligned_cols=74 Identities=22% Similarity=0.441 Sum_probs=67.2
Q ss_pred CceEEEcCCCCC-CcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 033994 26 RTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 26 ~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
...|-|.||..+ +|.+.|--+|+.||.|-++.+++.+. ..|+|+|.+...|+-|+..|+|..+.|++|+|.+|+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 577888888776 89999999999999999999988753 469999999999999999999999999999999985
No 90
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.61 E-value=3.6e-07 Score=49.25 Aligned_cols=67 Identities=21% Similarity=0.440 Sum_probs=46.0
Q ss_pred ceEEEcCCCCCCcHHHH----HHHhcccC-CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 033994 27 TKLFIGGLSYDTNETVL----KDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l----~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
..|+|.|||.+.....+ ++++..+| .|..+. .+.|+|.|.+.+.|.+|.+.|+|-.+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46899999999887654 45555665 566551 1479999999999999999999999999999999
Q ss_pred ec
Q 033994 102 YA 103 (106)
Q Consensus 102 ~a 103 (106)
+.
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 86
No 91
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.48 E-value=4.2e-08 Score=68.10 Aligned_cols=84 Identities=24% Similarity=0.388 Sum_probs=75.2
Q ss_pred ccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 033994 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
..++...+++++--++...+..+|.+||+..|+|..+.++.+..++..+|.+||+|.+.+....|+. |.|..+.|-+|.
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~ 251 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVI 251 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeE
Confidence 3445567888888888888999999999999999999999999999999999999999999999995 899999999999
Q ss_pred EEecc
Q 033994 100 VNYAH 104 (106)
Q Consensus 100 v~~a~ 104 (106)
|+.+.
T Consensus 252 vq~sE 256 (549)
T KOG0147|consen 252 VQLSE 256 (549)
T ss_pred ecccH
Confidence 88754
No 92
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.46 E-value=1.2e-06 Score=62.88 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=66.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
..+.|-+.|+|++++.+||.+||..|..+..--.++....|+..|.+.|-|++.+.|.+|...+++..|.+++|.+.+
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 345788899999999999999999997654433344445899999999999999999999999999999999998875
No 93
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.38 E-value=3.7e-06 Score=52.91 Aligned_cols=78 Identities=26% Similarity=0.492 Sum_probs=67.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeC-CeEEEEE
Q 033994 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD-GRNIRVN 101 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~-~~~l~v~ 101 (106)
......+++.+||.+++.+.+..+|..|..-..++++... .+.+||+|.+...+..|.+.+++..|. .+.+++.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 3456789999999999999999999999888888886643 468999999999999999999999987 8889988
Q ss_pred eccc
Q 033994 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++++
T Consensus 218 ~a~K 221 (221)
T KOG4206|consen 218 FAKK 221 (221)
T ss_pred ccCC
Confidence 8764
No 94
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.37 E-value=6.7e-07 Score=60.30 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=66.8
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccC-CeeE--EEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeE
Q 033994 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHG-EIIE--VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~--~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 97 (106)
.+......|.+++||++.+.++|.+||..|. .|.. +-++.. ..|...|-|||+|.+.+++.+|.+..++....++.
T Consensus 275 p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RY 353 (508)
T KOG1365|consen 275 PPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRY 353 (508)
T ss_pred CCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccce
Confidence 3444467899999999999999999999886 3444 333333 36778899999999999999999998888888999
Q ss_pred EEEEecc
Q 033994 98 IRVNYAH 104 (106)
Q Consensus 98 l~v~~a~ 104 (106)
|.|.-++
T Consensus 354 iEvfp~S 360 (508)
T KOG1365|consen 354 IEVFPCS 360 (508)
T ss_pred EEEeecc
Confidence 9887654
No 95
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.33 E-value=7.6e-07 Score=56.17 Aligned_cols=65 Identities=23% Similarity=0.319 Sum_probs=54.4
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeC
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~ 94 (106)
-.+|||.||..++++++|+.+|+.|.....+++... + +...+|++|++.+.|..|+-.|+|..+.
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--CcceEeecHHHHHHHHHHHHHhhcceec
Confidence 468999999999999999999999977666666322 2 3458999999999999999999988763
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.32 E-value=2.1e-06 Score=48.61 Aligned_cols=69 Identities=28% Similarity=0.466 Sum_probs=42.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCC-----eeeCCeEEEEE
Q 033994 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG-----LLLDGRNIRVN 101 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~-----~~~~~~~l~v~ 101 (106)
..|.+.+++..++.++|++.|+.+|.|..+.+.... ..|+|.|.+.+.|+.|+..+.. ..+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 357888999999999999999999999999886543 3799999999999999986533 34555555544
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.31 E-value=3.1e-06 Score=56.41 Aligned_cols=78 Identities=23% Similarity=0.468 Sum_probs=61.4
Q ss_pred CceEEEcCCCCCCcHHH------HHHHhcccCCeeEEEEeecCCC-CCeeeE--EEEEecCHHHHHHHHHHhCCeeeCCe
Q 033994 26 RTKLFIGGLSYDTNETV------LKDAFGQHGEIIEVKVICDRVT-GQSRGY--GFVKFASEAAAGEAIKEMDGLLLDGR 96 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~------l~~~f~~~g~i~~~~~~~~~~~-~~~~g~--~fv~f~~~~~a~~al~~l~~~~~~~~ 96 (106)
..-+||-+||+.+..++ -.++|.+||+|..|.+-+.... ....++ .||.|.+.++|.+|+...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999999877655 3578999999999987554311 111222 49999999999999999999999999
Q ss_pred EEEEEec
Q 033994 97 NIRVNYA 103 (106)
Q Consensus 97 ~l~v~~a 103 (106)
-|+..|.
T Consensus 194 ~lkatYG 200 (480)
T COG5175 194 VLKATYG 200 (480)
T ss_pred eEeeecC
Confidence 9998874
No 98
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.27 E-value=9.6e-07 Score=55.67 Aligned_cols=75 Identities=31% Similarity=0.526 Sum_probs=64.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 033994 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
....+.+.|.+++..+...+|.+.|.++|.+..... ..+++||+|...+++..|+..+++..+.++.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 456788999999999999999999999998844333 346899999999999999999999999999999866
Q ss_pred ccc
Q 033994 103 AHK 105 (106)
Q Consensus 103 a~~ 105 (106)
+.+
T Consensus 168 ~~~ 170 (216)
T KOG0106|consen 168 NSR 170 (216)
T ss_pred cCc
Confidence 543
No 99
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.24 E-value=1.4e-06 Score=58.05 Aligned_cols=82 Identities=28% Similarity=0.364 Sum_probs=72.2
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCee--------EEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeC
Q 033994 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEII--------EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~ 94 (106)
.....++||-++|..++++.+.++|.++|.|. .+.+..++.+++.++-|.|.|.+...|++|+.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45567899999999999999999999998763 3556777789999999999999999999999999999999
Q ss_pred CeEEEEEecc
Q 033994 95 GRNIRVNYAH 104 (106)
Q Consensus 95 ~~~l~v~~a~ 104 (106)
++.|+|..+.
T Consensus 143 gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 GNTIKVSLAE 152 (351)
T ss_pred CCCchhhhhh
Confidence 9999988764
No 100
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=2e-05 Score=55.59 Aligned_cols=79 Identities=25% Similarity=0.392 Sum_probs=63.7
Q ss_pred CCCCCceEEEcCCCCCCcH------HHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeC-
Q 033994 22 DANSRTKLFIGGLSYDTNE------TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD- 94 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~------~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~- 94 (106)
.+.....+.|.|+|.--.. .-|.++|+++|++....++.+..+ ..+||.|++|.+..+|+.|++.+||..++
T Consensus 54 ~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 54 AEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred cCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 3455678889999976432 346778999999999999888744 49999999999999999999999999875
Q ss_pred CeEEEEE
Q 033994 95 GRNIRVN 101 (106)
Q Consensus 95 ~~~l~v~ 101 (106)
++...|.
T Consensus 133 nHtf~v~ 139 (698)
T KOG2314|consen 133 NHTFFVR 139 (698)
T ss_pred cceEEee
Confidence 4555554
No 101
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.10 E-value=2.8e-06 Score=57.41 Aligned_cols=72 Identities=25% Similarity=0.368 Sum_probs=55.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHhccc----CCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQH----GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~----g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
.-.|.+++||+++++.++.+||.+- |....+-++..+ +|+..|-||+.|..+++|+.||++ |...++-+.|.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIE 236 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIE 236 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHH
Confidence 4557778999999999999999743 244566566655 888999999999999999999985 44445444443
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.07 E-value=6.3e-05 Score=50.93 Aligned_cols=69 Identities=19% Similarity=0.345 Sum_probs=58.2
Q ss_pred CCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCe--EEEEEecccC
Q 033994 33 GLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR--NIRVNYAHKD 106 (106)
Q Consensus 33 ~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~--~l~v~~a~~~ 106 (106)
|--.-++.+-|..++.+.|+|.++.+++. ++. -|.|+|++.+.|++|...|||..|... .|+|+||+|+
T Consensus 129 Np~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 129 NPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred cCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 44445788999999999999999988765 444 499999999999999999999998765 6888888875
No 103
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.06 E-value=3.3e-06 Score=55.68 Aligned_cols=80 Identities=25% Similarity=0.521 Sum_probs=71.0
Q ss_pred CCceEE-EcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 25 SRTKLF-IGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~-v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...+++ |.+++..++.++|+..|..+|.|..+.+..+..++..+|++++.|........++.. ....+.++.+.+...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 345566 999999999999999999999999999999988999999999999999999999986 777899998888876
Q ss_pred cc
Q 033994 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 262 ~~ 263 (285)
T KOG4210|consen 262 EP 263 (285)
T ss_pred CC
Confidence 54
No 104
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.05 E-value=2.4e-06 Score=54.71 Aligned_cols=73 Identities=16% Similarity=0.291 Sum_probs=61.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCC--------CCe----eeEEEEEecCHHHHHHHHHHhCCee
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVT--------GQS----RGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--------~~~----~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
..-.||+++||+.+...-++++|+.||.|-.+.+.....+ |.. ..-|.|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3467999999999999999999999999999988666533 222 2247899999999999999999999
Q ss_pred eCCeE
Q 033994 93 LDGRN 97 (106)
Q Consensus 93 ~~~~~ 97 (106)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 105
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.04 E-value=7.2e-05 Score=41.97 Aligned_cols=77 Identities=17% Similarity=0.249 Sum_probs=50.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEE-EeecC------CCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeE
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVK-VICDR------VTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~-~~~~~------~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 97 (106)
..+-|.|-+.|.. ....+.+.|++||.|.+.. ..... ......+.-.|.|.+..+|++||+ -||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3456888899999 4577899999999987664 11100 011234589999999999999999 4999998864
Q ss_pred -EEEEec
Q 033994 98 -IRVNYA 103 (106)
Q Consensus 98 -l~v~~a 103 (106)
+-|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 446665
No 106
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.04 E-value=2.3e-05 Score=38.95 Aligned_cols=52 Identities=27% Similarity=0.443 Sum_probs=41.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHH
Q 033994 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAI 85 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al 85 (106)
+.|-|.|.|.+..+ .+..+|..+|.|....+.. .....++.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 46778899988764 4566888999999988852 2358999999999999885
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=4.5e-05 Score=53.20 Aligned_cols=67 Identities=27% Similarity=0.522 Sum_probs=50.8
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCC-CC--Ceee---EEEEEecCHHHHHHHHHHh
Q 033994 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRV-TG--QSRG---YGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~-~~--~~~g---~~fv~f~~~~~a~~al~~l 88 (106)
..+...++|||++||++++++.|...|..||.+. +.+..... .+ -.+| |+|+.|+++.+++..+.++
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 3445678999999999999999999999999654 34432111 11 1345 9999999999999888754
No 108
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.01 E-value=3.2e-05 Score=54.26 Aligned_cols=66 Identities=20% Similarity=0.326 Sum_probs=54.3
Q ss_pred HHHHHHhcccCCeeEEEEeecCCC---CCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecccC
Q 033994 41 TVLKDAFGQHGEIIEVKVICDRVT---GQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHKD 106 (106)
Q Consensus 41 ~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~~~ 106 (106)
++++.-+++||.|..|.+.+...+ .-+.|-.||+|.+.+++++|...|+|-.+.|+.|...|-..|
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 456667889999999999877222 224577999999999999999999999999999999886543
No 109
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.99 E-value=9.3e-05 Score=37.86 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=45.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhccc---CCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHh
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQH---GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~---g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
...+|+|+|+. +++.++++.+|..| .....+.|+.+. .+-|.|.+...|.+||..|
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 35679999984 47778999999987 247789998886 5889999999999999754
No 110
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.97 E-value=6.5e-05 Score=50.22 Aligned_cols=76 Identities=21% Similarity=0.354 Sum_probs=60.5
Q ss_pred CCCceEEEcCCCC----CCc-------HHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCee
Q 033994 24 NSRTKLFIGGLSY----DTN-------ETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 24 ~~~~~l~v~~lp~----~~~-------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
...++|.+.|+-. ..+ .++|++-+.+||.|..+.+... ++-|.+-|.|.+.+.|..|++.|+|-.
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3567888887732 122 3567777889999999977533 355789999999999999999999999
Q ss_pred eCCeEEEEEec
Q 033994 93 LDGRNIRVNYA 103 (106)
Q Consensus 93 ~~~~~l~v~~a 103 (106)
++|++|..++.
T Consensus 339 fdgRql~A~i~ 349 (382)
T KOG1548|consen 339 FDGRQLTASIW 349 (382)
T ss_pred ecceEEEEEEe
Confidence 99999998864
No 111
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.92 E-value=0.00012 Score=43.63 Aligned_cols=57 Identities=28% Similarity=0.524 Sum_probs=45.5
Q ss_pred HHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecccC
Q 033994 41 TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHKD 106 (106)
Q Consensus 41 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~~~ 106 (106)
.++.+.|+.||.+.-+++..+ .-+|.|.+.+.|.+|+. ++|..+.|+.|+|+.-.+|
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 478888999998887777544 37899999999999998 7999999999999987765
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=9.3e-05 Score=51.69 Aligned_cols=67 Identities=24% Similarity=0.327 Sum_probs=60.1
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhc-ccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHH
Q 033994 21 SDANSRTKLFIGGLSYDTNETVLKDAFG-QHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 87 (106)
..-+..+||||++||.-++.++|-.++. -||.|..+.|-.|++-+-++|-+-|.|.+..+-.+|+.+
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3445689999999999999999999998 699999999988876777899999999999999999973
No 113
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.88 E-value=6.7e-05 Score=51.23 Aligned_cols=76 Identities=18% Similarity=0.335 Sum_probs=62.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCC-eeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCe-EEEEEe
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR-NIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~-~l~v~~ 102 (106)
...++++.|+|.++++++++..|..-|. +....+. ++.+.++++.+.+.+.|--|+..++.+.+++. .++|++
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~vkafkff-----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF-----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceEEeeeec-----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 3458999999999999999999987764 4544442 33456999999999999999998998888655 899999
Q ss_pred ccc
Q 033994 103 AHK 105 (106)
Q Consensus 103 a~~ 105 (106)
|+.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 874
No 114
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.87 E-value=0.0002 Score=38.67 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=43.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCC
Q 033994 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG 90 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~ 90 (106)
+...+..+|+ +|.++...+|.++|++||.|. +.++.+. .|||...+.+.+..++..+..
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 3345666776 999999999999999999875 5565553 699999999999999887754
No 115
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.82 E-value=2.4e-05 Score=52.45 Aligned_cols=75 Identities=23% Similarity=0.447 Sum_probs=65.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccC--CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeE
Q 033994 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 97 (106)
+.....+||+||-|.+|.++|.+.+...| .+..++++..+.+|.++|||++...+....+..++.|....|.|..
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 34467899999999999999999988766 5777888888889999999999999999999999988888888753
No 116
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.67 E-value=6.7e-05 Score=55.43 Aligned_cols=78 Identities=28% Similarity=0.441 Sum_probs=66.8
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCC--eEEE
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG--RNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~--~~l~ 99 (106)
.....+.+++++++..+....+.+.|..||.|+.|.+-... .|++|+|.+...+++|+..+.+..+++ ++++
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 33456789999999999999999999999999998774432 599999999999999999999999876 6788
Q ss_pred EEeccc
Q 033994 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|.++..
T Consensus 525 vdla~~ 530 (975)
T KOG0112|consen 525 VDLASP 530 (975)
T ss_pred cccccC
Confidence 887753
No 117
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.53 E-value=0.00068 Score=42.02 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=56.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeee
Q 033994 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 93 (106)
.....+.|++||.+.+.++|++....-|.+.+..+.++ |++.|+|-..++++-|++.|+...+
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccc
Confidence 45678999999999999999999999999999998776 3899999999999999998877654
No 118
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.51 E-value=0.0013 Score=44.73 Aligned_cols=76 Identities=20% Similarity=0.290 Sum_probs=66.2
Q ss_pred CCceEEEcCCCCC-CcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 25 SRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
....++|-+|... ++.+.+-.+|=-||.|..+++++.+ .|-|.|++-+....++|+..|++..+-|.+|.|..|
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 4677888999887 6677788888899999999998765 367999999999999999999999999999999887
Q ss_pred cc
Q 033994 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
+.
T Consensus 361 kQ 362 (494)
T KOG1456|consen 361 KQ 362 (494)
T ss_pred cc
Confidence 64
No 119
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.46 E-value=0.00029 Score=48.41 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=57.0
Q ss_pred ccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeec---CCCCC----------eeeEEEEEecCHHHHHHHHH
Q 033994 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICD---RVTGQ----------SRGYGFVKFASEAAAGEAIK 86 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~~----------~~g~~fv~f~~~~~a~~al~ 86 (106)
..++-..++|.+.|||.+-..+.|.++|+.+|.|..|++... +.+.. .+-+|+|+|...+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 344456789999999999888999999999999999998665 22211 13479999999999999998
Q ss_pred HhCCe
Q 033994 87 EMDGL 91 (106)
Q Consensus 87 ~l~~~ 91 (106)
.++..
T Consensus 305 ~~~~e 309 (484)
T KOG1855|consen 305 LLNPE 309 (484)
T ss_pred hhchh
Confidence 76443
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.35 E-value=8.4e-05 Score=54.63 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=67.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
....++|+|.|+..|.+.++.++..+|.+..+.++..+ .|+++|-+++.|.+..++..+....+...+..+.+.|..++
T Consensus 735 gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 735 GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccC
Confidence 36789999999999999999999999999988877766 79999999999999999999987776666666666666554
Q ss_pred c
Q 033994 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
|
T Consensus 814 p 814 (881)
T KOG0128|consen 814 P 814 (881)
T ss_pred C
Confidence 3
No 121
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=97.34 E-value=0.00083 Score=41.48 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=45.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcc-cCCe---eEEEEeecC--CCCCeeeEEEEEecCHHHHHHHHHHhCCeee
Q 033994 23 ANSRTKLFIGGLSYDTNETVLKDAFGQ-HGEI---IEVKVICDR--VTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~-~g~i---~~~~~~~~~--~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 93 (106)
.....+|.|++||+.++++++.+.+++ ++.- ....-.... ......+-|||.|.+.+++......++|..+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 345668999999999999999987776 5544 333211221 1122345699999999999999999999875
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.24 E-value=0.00027 Score=51.32 Aligned_cols=78 Identities=19% Similarity=0.120 Sum_probs=64.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeE-EEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 033994 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
.....|||..||..+++.++.++|...-.|+. |.+.+.+ +++.++.|||.|...+.+..|...-+.+.++.+.|+|.-
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 45678999999999999999999987666665 7777766 777889999999998888888776566678888898874
No 123
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.00 E-value=0.00034 Score=45.07 Aligned_cols=62 Identities=27% Similarity=0.415 Sum_probs=48.1
Q ss_pred HHHHHHhc-ccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 41 TVLKDAFG-QHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 41 ~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
+++...++ +||.|..+.+- +.......|-++|.|...++|++|+..||+-.+.|++|...++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc-~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVC-DNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhh-cccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 33444455 78999888542 2223445788999999999999999999999999999988764
No 124
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.97 E-value=0.0012 Score=45.59 Aligned_cols=71 Identities=28% Similarity=0.457 Sum_probs=54.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCee-eCCeEEEEEec
Q 033994 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL-LDGRNIRVNYA 103 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~-~~~~~l~v~~a 103 (106)
.++|++||.+.++..++..+|...--...=.++. ..||+|+.+.+...+.+|++.+++.. +.|.++.+..+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 3689999999999999999997541111111111 23799999999999999999998874 88998888765
No 125
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.96 E-value=0.012 Score=35.15 Aligned_cols=75 Identities=13% Similarity=0.195 Sum_probs=55.4
Q ss_pred CCCCCceEEEcCCCCCCc-HHH---HHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeE
Q 033994 22 DANSRTKLFIGGLSYDTN-ETV---LKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~-~~~---l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 97 (106)
.+..-.+|.|+=|..++. .+| +.+.++.||+|..+.+ .++..|.|.|.+..+|=+|+.+++. ...|..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-------cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-------CGRQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-------cCCceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 344567888887777754 233 4555678999988744 3456899999999999999998765 667778
Q ss_pred EEEEecc
Q 033994 98 IRVNYAH 104 (106)
Q Consensus 98 l~v~~a~ 104 (106)
++..|-.
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 8887743
No 126
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.95 E-value=3e-05 Score=56.84 Aligned_cols=68 Identities=26% Similarity=0.435 Sum_probs=58.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeC
Q 033994 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~ 94 (106)
.++|++||+..+.+.++...|..+|.+..+++......+..+|.||++|...+++.+++....+..++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 56889999999999999999999998888877766667889999999999999999999855444443
No 127
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.89 E-value=0.0071 Score=40.11 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=50.5
Q ss_pred HHHHHHHhcccCCeeEEEEeecCCCCCee-eEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 033994 40 ETVLKDAFGQHGEIIEVKVICDRVTGQSR-GYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 40 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~-g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
++++.+-+++||.|..+-+.-.+...... ---||+|...+++.+|+-.|||-.++|+.+..-+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 46678889999999998887765333322 2379999999999999999999999999887654
No 128
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.85 E-value=0.0015 Score=46.77 Aligned_cols=78 Identities=14% Similarity=0.252 Sum_probs=61.9
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhccc-CCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeee---CCeE
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQH-GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL---DGRN 97 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~---~~~~ 97 (106)
.....+.|||.||-.-.|.-+|+.++..- |-|... |+.. -+.+|||.|.+.++|.+...+||+..+ +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk-----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK-----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHH-----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 33457889999999999999999999854 456555 5433 346899999999999999999999986 4567
Q ss_pred EEEEeccc
Q 033994 98 IRVNYAHK 105 (106)
Q Consensus 98 l~v~~a~~ 105 (106)
|.+.|...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 88887654
No 129
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.69 E-value=0.0029 Score=40.96 Aligned_cols=61 Identities=25% Similarity=0.408 Sum_probs=53.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHh
Q 033994 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
..|||.||+..++.+.+.+-|+.||+|....+..+. .++..+-++|.|.....+.+|+..+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHh
Confidence 579999999999999999999999999776555554 6777889999999999999999866
No 130
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.68 E-value=0.0064 Score=41.74 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=56.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCC---CCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 033994 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRV---TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
..|.|.||.+.++.++++.+|...|.|..+.+..... -....-.|||-|.+...+..|-. |..+.+-+..|.|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 4789999999999999999999999999998765321 23345689999999999998876 5555554544444
No 131
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.49 E-value=0.0085 Score=42.61 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=42.6
Q ss_pred CCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeee---C-CeEEEEEecc
Q 033994 51 GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL---D-GRNIRVNYAH 104 (106)
Q Consensus 51 g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~---~-~~~l~v~~a~ 104 (106)
|.=.+++++.|..+.+..|||||.|.+.+++..+.+++||+.+ . .+.+.+.||+
T Consensus 414 gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 414 GTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred CccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 4445677888888889999999999999999999999999963 3 3445565553
No 132
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.37 E-value=0.021 Score=35.57 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=44.7
Q ss_pred cHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhC--CeeeCCeEEEEEecc
Q 033994 39 NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD--GLLLDGRNIRVNYAH 104 (106)
Q Consensus 39 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~--~~~~~~~~l~v~~a~ 104 (106)
....|+++|..++.+..+.++... +=..|.|.+.+.|..+...|+ +..+.|..+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 347899999999988887776654 247899999999999999999 889999999998864
No 133
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.37 E-value=0.077 Score=30.35 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=47.6
Q ss_pred ceEEEcCCCCC-CcHHHHHHHhccc-CCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCC
Q 033994 27 TKLFIGGLSYD-TNETVLKDAFGQH-GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG 95 (106)
Q Consensus 27 ~~l~v~~lp~~-~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~ 95 (106)
..+.+=..|.. ++.+.|..+.+.+ ..|..++++++.. ..+-.+++.|.+..+|......+||..+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444344444 5556666665665 4688899988752 245579999999999999999999998643
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.27 E-value=0.00074 Score=50.22 Aligned_cols=79 Identities=23% Similarity=0.395 Sum_probs=64.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|+++|++..+++.+|+..|..+|.+..+.+-... -+...-++|+.|.+...+..++..+.+..|....+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 357899999999999999999999999999999885543 3334568999999999988888888888776665555544
No 135
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.03 E-value=0.0042 Score=43.45 Aligned_cols=74 Identities=26% Similarity=0.353 Sum_probs=59.9
Q ss_pred CCceEEEcCCCCCC-cHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 033994 25 SRTKLFIGGLSYDT-NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
..+.|-+...|+.. +..+|...|.+||.|..|++-+.. ..|.|.|.+.-+|-.|-. .++..|+|+.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 34566677778775 568899999999999999886542 379999999999866665 5899999999999997
Q ss_pred cc
Q 033994 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
++
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 65
No 136
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.64 E-value=0.0044 Score=41.49 Aligned_cols=78 Identities=22% Similarity=0.434 Sum_probs=57.9
Q ss_pred CCceEEEcCCCCCCcHHHHH---HHhcccCCeeEEEEeecCC--CC-CeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEE
Q 033994 25 SRTKLFIGGLSYDTNETVLK---DAFGQHGEIIEVKVICDRV--TG-QSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~---~~f~~~g~i~~~~~~~~~~--~~-~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l 98 (106)
....+||-+|+..+..+.+. ++|..||.|..+....+.. .+ .....++|.|...++|..|+...+|+..+|+.+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34668888999887655543 4578889999888776541 11 123459999999999999999999999888775
Q ss_pred EEEe
Q 033994 99 RVNY 102 (106)
Q Consensus 99 ~v~~ 102 (106)
+..+
T Consensus 156 ka~~ 159 (327)
T KOG2068|consen 156 KASL 159 (327)
T ss_pred HHhh
Confidence 5544
No 137
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.37 E-value=0.15 Score=35.90 Aligned_cols=68 Identities=21% Similarity=0.223 Sum_probs=56.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccC-CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeC
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~ 94 (106)
....|.|-.+|..++-.|+..|+..+- .|..++++++. .+ .+=..+|.|.+..+|...-..+||..+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~-~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG-MP-NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC-CC-ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 377889999999999999999998764 68999999964 22 2336899999999999999999998764
No 138
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.72 E-value=0.29 Score=25.72 Aligned_cols=67 Identities=22% Similarity=0.426 Sum_probs=37.3
Q ss_pred eEEEc-CCCCCCcHHHHHHHhcccCC-----eeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 033994 28 KLFIG-GLSYDTNETVLKDAFGQHGE-----IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 28 ~l~v~-~lp~~~~~~~l~~~f~~~g~-----i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
+++|. |--..++..+|..++...+. |-.+.+.. .|+|++.... .+..++..|++..+.|++++|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 34553 33445778888888876533 45565532 3788887755 6677888899999999999998
Q ss_pred ec
Q 033994 102 YA 103 (106)
Q Consensus 102 ~a 103 (106)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 139
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.99 E-value=0.15 Score=36.82 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=51.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcc--cCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCC--eeeCCeEEEE
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQ--HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LLLDGRNIRV 100 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~--~~~~~~~l~v 100 (106)
..+.+.++-||..+..++++.+|.. +-++..|.+.... -=||.|++..||+.|.+.|.. ..|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3566777999999999999999975 4456666664433 368999999999999876532 2366665543
Q ss_pred E
Q 033994 101 N 101 (106)
Q Consensus 101 ~ 101 (106)
+
T Consensus 247 R 247 (684)
T KOG2591|consen 247 R 247 (684)
T ss_pred h
Confidence 3
No 140
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.90 E-value=0.45 Score=24.65 Aligned_cols=54 Identities=17% Similarity=0.154 Sum_probs=41.7
Q ss_pred CcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 033994 38 TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 38 ~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
++-++++.-+..|+- ..+ ..++ + .-||.|.+..+|+++....++..+.+.++.+
T Consensus 12 ~~v~d~K~~Lr~y~~-~~I--~~d~-t-----GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 12 VTVEDFKKRLRKYRW-DRI--RDDR-T-----GFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred ccHHHHHHHHhcCCc-ceE--EecC-C-----EEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 567899999999863 222 2332 2 3689999999999999999999988887765
No 141
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.89 E-value=0.4 Score=32.21 Aligned_cols=62 Identities=16% Similarity=0.351 Sum_probs=45.8
Q ss_pred eEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeE
Q 033994 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 28 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 97 (106)
=|.|-++|+.-. .-+...|+.+|.|...... . + -.+-+|.|.+..+|++||. .+|..|+|..
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~-n---gNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--S-N---GNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecC--C-C---CceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 344557777654 4577889999988765432 1 2 2488999999999999998 4899888753
No 142
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.78 E-value=0.055 Score=40.71 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=60.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeee--CCeEEEEEec
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL--DGRNIRVNYA 103 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~--~~~~l~v~~a 103 (106)
..+.++.|.+-..+-..|..+|+.||.+.....+++. .++.|+|...+.|-.|+.+++|.++ -|-+.+|.+|
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 4556677777788888899999999999888777765 4899999999999999999999974 5667888777
Q ss_pred c
Q 033994 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
+
T Consensus 372 k 372 (1007)
T KOG4574|consen 372 K 372 (1007)
T ss_pred c
Confidence 5
No 143
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.64 E-value=0.13 Score=37.65 Aligned_cols=70 Identities=20% Similarity=0.331 Sum_probs=57.0
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
+.....++||+|+...+...-++..+..+|-|..+... .|+|..|........|++.++...++|.++.+
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 34456789999999999999999999999977655332 28999999999999999988888888876654
No 144
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.59 E-value=0.52 Score=32.92 Aligned_cols=59 Identities=20% Similarity=0.174 Sum_probs=50.4
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccC-CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHH
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 87 (106)
+..-.+.|-|-++|.....++|...|..|+ .-..|.|+.+. ++|..|.+...|..||-.
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 334578889999999999999999999986 56888998876 899999999999999863
No 145
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=90.27 E-value=0.96 Score=23.11 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=17.4
Q ss_pred HHHHHHhcccCCeeEEEEeec
Q 033994 41 TVLKDAFGQHGEIIEVKVICD 61 (106)
Q Consensus 41 ~~l~~~f~~~g~i~~~~~~~~ 61 (106)
.+||++|+..|+|.-+.+..-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 679999999999988877443
No 146
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=89.74 E-value=0.23 Score=33.14 Aligned_cols=75 Identities=23% Similarity=0.240 Sum_probs=55.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
...++|++++.+.+.+.+...++..+|................++++++.|...+.+..++.........++.+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~ 161 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGE 161 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccccccccc
Confidence 477899999999998887788888888665554444333566789999999999999999985443455554443
No 147
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=89.71 E-value=0.93 Score=23.57 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=43.7
Q ss_pred HHHHHHhcccC-CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 033994 41 TVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 41 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~~ 105 (106)
++|.+-|...| .+..+.-+..+.++......||+.....+.. +.++-..+.+..|.|+..++
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecCCC
Confidence 46778888777 6888877777767777788889887665522 23444557788888887643
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=87.58 E-value=0.027 Score=38.83 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=52.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeC
Q 033994 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~ 94 (106)
...++++|.+|+..+-..++.+.|..+|.+....+.-. ....++-++|........|++ ++|.++.
T Consensus 149 eirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 149 EIRRTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred HHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 34588999999999999999999999999887766432 234467799999999999998 4666543
No 149
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=85.99 E-value=3.1 Score=27.97 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=35.8
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCC-eeEEEEeecCCCCCeeeEEEEEecC
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVICDRVTGQSRGYGFVKFAS 77 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~~fv~f~~ 77 (106)
...++++|||.++.-.+|+..+...+. ...+.|. | +++-||+.|-+
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g-~~~k~flh~~~ 376 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----G-HFGKCFLHFGN 376 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee-----c-CCcceeEecCC
Confidence 467999999999999999999988763 4566662 1 34669999965
No 150
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=84.79 E-value=2 Score=22.47 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=41.8
Q ss_pred HHHHHHhcccC-CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 033994 41 TVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 41 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
.+|.+-|...| ++..+.-+..+.++.+...-+|+.....+... .++-..+.+.++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888888 68888777776556666778888776543332 344455788888888654
No 151
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.38 E-value=8.1 Score=28.55 Aligned_cols=74 Identities=22% Similarity=0.332 Sum_probs=55.6
Q ss_pred CCCceEEEcCCCCC-CcHHHHHHHhccc----CCeeEEEEeecCC----------CCC----------------------
Q 033994 24 NSRTKLFIGGLSYD-TNETVLKDAFGQH----GEIIEVKVICDRV----------TGQ---------------------- 66 (106)
Q Consensus 24 ~~~~~l~v~~lp~~-~~~~~l~~~f~~~----g~i~~~~~~~~~~----------~~~---------------------- 66 (106)
...++|-|-|+.|. +...+|.-+|+.| |.|..+.|..... .|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 35678999999998 7889999999876 5777777644321 011
Q ss_pred ---------------eeeEEEEEecCHHHHHHHHHHhCCeeeCCeE
Q 033994 67 ---------------SRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 67 ---------------~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 97 (106)
.-=||.|+|.+...|.+.-..++|+.+....
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~ 297 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSA 297 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccc
Confidence 0127999999999999999999999986543
No 152
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=76.64 E-value=2 Score=23.59 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhc
Q 033994 24 NSRTKLFIGGLSYDTNETVLKDAFG 48 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~ 48 (106)
...+++-|.|||....++++++.++
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 4578899999999999999987765
No 153
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=74.33 E-value=6.4 Score=22.87 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=36.5
Q ss_pred cccCCCCCceEEEcCCCCCCcHHHHHHHhcc---cCCeeEEEEeecCCCCCeeeEEEEEecCHHHHH
Q 033994 19 LLSDANSRTKLFIGGLSYDTNETVLKDAFGQ---HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82 (106)
Q Consensus 19 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~---~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 82 (106)
....+.....+| -|..++..+++++|+. |..|.+-.+.++-.-...-..||..|......+
T Consensus 70 i~gTPsgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~~e~ 133 (145)
T TIGR02542 70 IQGTPSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQFEE 133 (145)
T ss_pred EecCCCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccchhHH
Confidence 344444444333 3677899999999974 566666666555332223346787777654433
No 154
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=71.42 E-value=0.091 Score=36.77 Aligned_cols=75 Identities=17% Similarity=0.308 Sum_probs=58.2
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
..+++-++|+|+....+-+..++..||.+..|....-. ......-+.|...+.++.++..+++..+.+..+++.|
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~---~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD---SETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc---hHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 34668899999999999999999999999888653321 1222344778889999999999999988877777665
No 155
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=67.61 E-value=5.8 Score=24.88 Aligned_cols=73 Identities=14% Similarity=0.244 Sum_probs=49.4
Q ss_pred CceEEEcCCCCCCcH-----HHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCe-EEE
Q 033994 26 RTKLFIGGLSYDTNE-----TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR-NIR 99 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~-----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~-~l~ 99 (106)
..++.+..++..+.. .....+|..+.+....++++.. +...|.|.+...+..|...++...+.|+ .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 445666677666432 2344456666655555555432 4577999999999999998999999887 666
Q ss_pred EEecc
Q 033994 100 VNYAH 104 (106)
Q Consensus 100 v~~a~ 104 (106)
...+.
T Consensus 84 ~yfaQ 88 (193)
T KOG4019|consen 84 LYFAQ 88 (193)
T ss_pred EEEcc
Confidence 65554
No 156
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=67.08 E-value=22 Score=20.49 Aligned_cols=45 Identities=18% Similarity=0.339 Sum_probs=26.1
Q ss_pred cHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEec-CHHHHHHHHH
Q 033994 39 NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFA-SEAAAGEAIK 86 (106)
Q Consensus 39 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~-~~~~a~~al~ 86 (106)
+.+.|++.|+.|.++. +..+... ..+.|+++|.|. +-.-...|++
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 4578999999998765 4444544 357889999997 4444455544
No 157
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=65.71 E-value=12 Score=25.23 Aligned_cols=40 Identities=23% Similarity=0.415 Sum_probs=30.4
Q ss_pred cCCCCCceEEEcCCCCC------------CcHHHHHHHhcccCCeeEEEEee
Q 033994 21 SDANSRTKLFIGGLSYD------------TNETVLKDAFGQHGEIIEVKVIC 60 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~------------~~~~~l~~~f~~~g~i~~~~~~~ 60 (106)
.+...+.++|+.+||-. .+++-|+..|+.||.|+.+.++.
T Consensus 144 kpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 144 KPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 34445678999998853 34677999999999999987744
No 158
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=64.61 E-value=14 Score=25.79 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=47.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCC-eeEEEEeecCC--CCCeeeEEEEEecCHHHHHHHHHHhCCeee
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVICDRV--TGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~--~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 93 (106)
....+-|.+||+..++.++.+-..++-. +....+..... .....+.+||.|....+..-....++|+.+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 4567888999999999998888777532 22222221110 111246799999999998888888888764
No 159
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=63.71 E-value=3.7 Score=28.85 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=49.7
Q ss_pred CCCCceEEEcCCCCCCcH--------HHHHHHhcc--cCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHH
Q 033994 23 ANSRTKLFIGGLSYDTNE--------TVLKDAFGQ--HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAI 85 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~--------~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al 85 (106)
....+.+|+.++...... +++..+|.. .+.+..+...++..+....|..|++|.....+++.+
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 344567888887776544 489999988 567888888777767778889999999999999887
No 160
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=63.44 E-value=1.5 Score=28.40 Aligned_cols=66 Identities=30% Similarity=0.483 Sum_probs=50.5
Q ss_pred CceEEEcC----CCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCee
Q 033994 26 RTKLFIGG----LSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 26 ~~~l~v~~----lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
..+++-++ |...++++.+...|+.-|+++..++..+. ++..+.++++.+........++..+.++.
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 44455555 55667888888889999999988887776 57788899999988888888887666554
No 161
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=63.20 E-value=0.76 Score=33.39 Aligned_cols=71 Identities=10% Similarity=0.104 Sum_probs=51.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCC
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG 95 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~ 95 (106)
..+.++++|+++..+-.+|...+..+..+..+.+-.........-..++.|.......-|+-+|+++.+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 45789999999999999999999988655555443333233344568888887777777777788776543
No 162
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=62.78 E-value=29 Score=23.60 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=43.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecC-------CCCCeeeEEEEEecCHHHHHH
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDR-------VTGQSRGYGFVKFASEAAAGE 83 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-------~~~~~~g~~fv~f~~~~~a~~ 83 (106)
..+.|..+|+..+++-..+..-|..||+|+.++++.+. .+.+......+.|-+.+.+..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 35667788999999888888999999999999998765 112233467778877766543
No 163
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=62.12 E-value=12 Score=25.04 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=18.2
Q ss_pred EEEEecCHHHHHHHHHHhCCee
Q 033994 71 GFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 71 ~fv~f~~~~~a~~al~~l~~~~ 92 (106)
|||.|++..+|+.+++.+....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~ 22 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR 22 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC
Confidence 6999999999999999654443
No 164
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=57.28 E-value=22 Score=22.25 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=42.0
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHH
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAI 85 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al 85 (106)
.......+++.+++..++...+...|..+|.+....+.............++.+.....+....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 3445678899999999999999999999999866666554433323333334333344333333
No 165
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=54.57 E-value=29 Score=18.57 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.1
Q ss_pred eeeEEEEEecCHHHHHHHHHHhCCee
Q 033994 67 SRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 67 ~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
.+||-||+=.+..++..|++.+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 67899999999999999998776654
No 166
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=50.53 E-value=31 Score=19.48 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=18.6
Q ss_pred CCeeeEEEEEecCHHHHHHHHHHh
Q 033994 65 GQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 65 ~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
..---|+.++|.+.+.+.++...+
T Consensus 63 dE~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 63 DEEVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred CcEEEEEEEEcCchhHHHHHHHHh
Confidence 334458999999999998887644
No 167
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=48.56 E-value=20 Score=23.51 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=27.7
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCe
Q 033994 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEI 53 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i 53 (106)
.......++|+-|+|...+++.+.++.+..|-+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~v 67 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHV 67 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhh
Confidence 344567889999999999999999999987744
No 168
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=48.23 E-value=36 Score=21.47 Aligned_cols=56 Identities=16% Similarity=0.055 Sum_probs=36.8
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCC--CeeeEEEEEecCHHHHHHHHH
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTG--QSRGYGFVKFASEAAAGEAIK 86 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~al~ 86 (106)
.+++|.. |.+...++|.++-+ |.+.++...... ++ ..+|..||.|...+.+.++++
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhh
Confidence 4556554 33334445555444 778777665443 33 467899999999999998776
No 169
>PHA01632 hypothetical protein
Probab=45.90 E-value=23 Score=17.67 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=17.1
Q ss_pred EEEcCCCCCCcHHHHHHHhcc
Q 033994 29 LFIGGLSYDTNETVLKDAFGQ 49 (106)
Q Consensus 29 l~v~~lp~~~~~~~l~~~f~~ 49 (106)
+.|..+|...++++|++.+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 334788999999999998764
No 170
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=43.17 E-value=56 Score=17.75 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=38.9
Q ss_pred EEcCCCCCCcHHHHHHHhcc-cC-CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHH
Q 033994 30 FIGGLSYDTNETVLKDAFGQ-HG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87 (106)
Q Consensus 30 ~v~~lp~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 87 (106)
|+--.+...+..+|++.++. || .|..+....-+ .+ ..=|+|.+.....|......
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~--~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KG--EKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--cEEEEEEeCCCCcHHHHHHh
Confidence 34446889999999999986 67 57777665554 22 22499999888877766543
No 171
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=42.12 E-value=55 Score=17.43 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=38.4
Q ss_pred EEEcCCCCCCcHHHHHHHhcc-cC-CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHH
Q 033994 29 LFIGGLSYDTNETVLKDAFGQ-HG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87 (106)
Q Consensus 29 l~v~~lp~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 87 (106)
-|+-.++...+..+|++.++. || .+..+....-+. ...=|||.+.....|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 344457899999999999986 66 577776655442 222499999877776655443
No 172
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=42.09 E-value=22 Score=16.09 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=9.8
Q ss_pred CCCcHHHHHHHhcccC
Q 033994 36 YDTNETVLKDAFGQHG 51 (106)
Q Consensus 36 ~~~~~~~l~~~f~~~g 51 (106)
.++++++|++.|...+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3567899999998754
No 173
>PF02946 GTF2I: GTF2I-like repeat; InterPro: IPR004212 This region of sequence similarity is found up to six times in a variety of proteins including general transcription factor II-I (GTF2I). It has been suggested that this may be a DNA binding domain [, ].; PDB: 2E3L_A 2D99_A 2DN4_A 2D9B_A 2EJE_A 1Q60_A 2DZR_A 2DN5_A 2DZQ_A 2ED2_A.
Probab=41.33 E-value=58 Score=17.41 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=17.7
Q ss_pred CceEEEcCCCCCCc--------HHHHHHHhcccCCeeEE
Q 033994 26 RTKLFIGGLSYDTN--------ETVLKDAFGQHGEIIEV 56 (106)
Q Consensus 26 ~~~l~v~~lp~~~~--------~~~l~~~f~~~g~i~~~ 56 (106)
...|+|.|||..+. ...|++++..-..|.++
T Consensus 34 p~~v~V~GLPegi~fr~P~~Y~i~~L~~IL~~~~~I~Fv 72 (76)
T PF02946_consen 34 PEAVYVQGLPEGIPFRRPSNYGIPRLEKILEASSRIRFV 72 (76)
T ss_dssp TTTEEEES--TT--SS-TTTS-HHHHHHHHHTTTT-EEE
T ss_pred CCcEEEEeCCCCCcCCCCCcCCHHHHHHHHHccCCcEEE
Confidence 44699999988764 46677777665555543
No 174
>PF15063 TC1: Thyroid cancer protein 1
Probab=37.32 E-value=26 Score=18.68 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=23.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCe
Q 033994 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEI 53 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i 53 (106)
..++--+.||-.+++...|+++|..-|+.
T Consensus 24 ~~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 24 ASRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred HHhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 34555578999999999999999998864
No 175
>PF14893 PNMA: PNMA
Probab=35.71 E-value=31 Score=23.79 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=21.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcc
Q 033994 24 NSRTKLFIGGLSYDTNETVLKDAFGQ 49 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~ 49 (106)
+..+.|-|.+||.++++.+|++.+..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHH
Confidence 34567889999999999998888653
No 176
>PRK11901 hypothetical protein; Reviewed
Probab=33.93 E-value=1.6e+02 Score=20.42 Aligned_cols=65 Identities=17% Similarity=0.141 Sum_probs=40.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCe-eeEEEEEecCHHHHHHHHHHhCC
Q 033994 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQS-RGYGFVKFASEAAAGEAIKEMDG 90 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~al~~l~~ 90 (106)
.+....+|-|... ..++.|..|....+ +..+.+.....+|+. .-.-+-.|.+.++|..|+..|..
T Consensus 241 ~p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 241 APASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 3445566666553 44777888887665 333444333323432 23455679999999999998754
No 177
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=33.28 E-value=94 Score=17.47 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=25.7
Q ss_pred CCcHHHHHHHhcc-cCCeeEEEEeecC----CCCCeeeEEEEEecCHHHHHHH
Q 033994 37 DTNETVLKDAFGQ-HGEIIEVKVICDR----VTGQSRGYGFVKFASEAAAGEA 84 (106)
Q Consensus 37 ~~~~~~l~~~f~~-~g~i~~~~~~~~~----~~~~~~g~~fv~f~~~~~a~~a 84 (106)
..+..++++-+.. ++.-...-++..- -.+++.|||.| |.+.+.+.+.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 4567777777653 5532222222222 23456677776 7777776543
No 178
>PRK10905 cell division protein DamX; Validated
Probab=31.98 E-value=1.8e+02 Score=20.24 Aligned_cols=69 Identities=19% Similarity=0.034 Sum_probs=42.1
Q ss_pred ccccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCC-eeeEEEEEecCHHHHHHHHHHhCC
Q 033994 18 RLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ-SRGYGFVKFASEAAAGEAIKEMDG 90 (106)
Q Consensus 18 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~al~~l~~ 90 (106)
+....+....+|-|..+.. .+.++.|..+.|- ....+.....+|+ -.-.-+-.|.+.++|++|+..|..
T Consensus 239 ~L~sapa~~YTLQL~A~Ss---~~~l~~fakKlgL-~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 239 SLKSAPSSHYTLQLSSSSN---YDNLNGWAKKENL-KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred HHhcCCCCceEEEEEecCC---HHHHHHHHHHcCC-CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 4445555677787766554 4666777666652 2222322322444 233556789999999999998754
No 179
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=31.05 E-value=1.2e+02 Score=17.86 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=27.5
Q ss_pred CCcHHHHHHHhcc-cC----CeeEEEEeecCCCCCeeeEEEEEecCHHHHHH
Q 033994 37 DTNETVLKDAFGQ-HG----EIIEVKVICDRVTGQSRGYGFVKFASEAAAGE 83 (106)
Q Consensus 37 ~~~~~~l~~~f~~-~g----~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 83 (106)
.++.++|++-++. |- .|.-..+-.....|+..|||.| |.+.+.+.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 4567777777654 32 2333344444445777888888 777666553
No 180
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=30.99 E-value=24 Score=18.29 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=15.4
Q ss_pred CCCCceEEEcCCCCCCcHHH
Q 033994 23 ANSRTKLFIGGLSYDTNETV 42 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~ 42 (106)
....++++||++|..+-.+.
T Consensus 24 s~tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 24 SLTSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred HHcCceEEECCCChHHHHcC
Confidence 34578899999999876544
No 181
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=29.41 E-value=90 Score=16.08 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=21.1
Q ss_pred HHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEE
Q 033994 40 ETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFV 73 (106)
Q Consensus 40 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv 73 (106)
+.++.++|-+-..+..+.+.-.+.- .+|-|||
T Consensus 32 e~eler~fl~~P~v~e~~l~EKKri--~~G~gyV 63 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALYEKKRI--RKGAGYV 63 (64)
T ss_pred HHHhhhhccCCCCceEEEEEEEEee--eCCceeE
Confidence 4667788877778888888765533 3444554
No 182
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=29.40 E-value=49 Score=14.72 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=13.2
Q ss_pred CCcHHHHHHHhcccCC
Q 033994 37 DTNETVLKDAFGQHGE 52 (106)
Q Consensus 37 ~~~~~~l~~~f~~~g~ 52 (106)
.++.++|+.++..+|-
T Consensus 3 tWs~~~L~~wL~~~gi 18 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGI 18 (38)
T ss_pred CCCHHHHHHHHHHcCC
Confidence 4678999999998873
No 183
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=28.72 E-value=18 Score=20.83 Aligned_cols=11 Identities=36% Similarity=0.812 Sum_probs=9.0
Q ss_pred CCceEEEcCCC
Q 033994 25 SRTKLFIGGLS 35 (106)
Q Consensus 25 ~~~~l~v~~lp 35 (106)
....+||+++|
T Consensus 91 ~~~~lyvGG~p 101 (131)
T PF00054_consen 91 VDGPLYVGGLP 101 (131)
T ss_dssp ECSEEEESSSS
T ss_pred cccCEEEccCC
Confidence 34569999999
No 184
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=27.62 E-value=42 Score=19.64 Aligned_cols=30 Identities=37% Similarity=0.355 Sum_probs=24.2
Q ss_pred EEEcCCCCC-CcHHHHHHHhcccCCeeEEEE
Q 033994 29 LFIGGLSYD-TNETVLKDAFGQHGEIIEVKV 58 (106)
Q Consensus 29 l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~ 58 (106)
+.+.|||.. .+++.++.+.+..|.+..+..
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~ 137 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDE 137 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEc
Confidence 455799998 677888888889998887755
No 185
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=26.58 E-value=1e+02 Score=15.79 Aligned_cols=24 Identities=25% Similarity=0.211 Sum_probs=18.5
Q ss_pred EEEEEecCHHHHHHHHHHhCCeee
Q 033994 70 YGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 70 ~~fv~f~~~~~a~~al~~l~~~~~ 93 (106)
+.+|.|.+..+|.++-+.+....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 678999999999888776654433
No 186
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=25.25 E-value=1.3e+02 Score=20.02 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=21.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCe
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQHGEI 53 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i 53 (106)
.....|+|||++++..-+.+++...-.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 3456699999999999888888754333
No 187
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=24.62 E-value=1.2e+02 Score=15.92 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=25.4
Q ss_pred HhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCee
Q 033994 46 AFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 46 ~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
-+..||.|..+.= +. .|+ +.|.+.++++..++.+....
T Consensus 16 ~L~kfG~i~Y~Sk-------k~-kYv-vlYvn~~~~e~~~~kl~~l~ 53 (71)
T PF09902_consen 16 QLRKFGDIHYVSK-------KM-KYV-VLYVNEEDVEEIIEKLKKLK 53 (71)
T ss_pred hHhhcccEEEEEC-------Cc-cEE-EEEECHHHHHHHHHHHhcCC
Confidence 4568998876632 11 244 44889999999888776554
No 188
>PRK02302 hypothetical protein; Provisional
Probab=24.06 E-value=1.4e+02 Score=16.49 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=25.3
Q ss_pred HhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCee
Q 033994 46 AFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 46 ~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
-+.+||.|....= +. .|+ |-|.+.++++..+..+....
T Consensus 22 ~LrkfG~I~Y~Sk-------k~-kYv-vlYvn~~~~e~~~~kl~~l~ 59 (89)
T PRK02302 22 KLSKYGDIVYHSK-------RS-RYL-VLYVNKEDVEQKLEELSKLK 59 (89)
T ss_pred HHhhcCcEEEEec-------cc-cEE-EEEECHHHHHHHHHHHhcCC
Confidence 4568998876622 11 244 44889999999988776554
No 189
>smart00457 MACPF membrane-attack complex / perforin.
Probab=23.21 E-value=43 Score=20.82 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=21.8
Q ss_pred EcCCCCCCcHHHHHHHhcccCC--eeEEEE
Q 033994 31 IGGLSYDTNETVLKDAFGQHGE--IIEVKV 58 (106)
Q Consensus 31 v~~lp~~~~~~~l~~~f~~~g~--i~~~~~ 58 (106)
+..||...+......||..||. |..+.+
T Consensus 30 l~~Lp~~~~~~~~~~fi~~yGTH~i~s~~~ 59 (194)
T smart00457 30 LRDLPDQYNRGAYARFIDKYGTHYITSATL 59 (194)
T ss_pred HHhCccccCHHHHHHHHHHhCCeEEEeeee
Confidence 4588988889999999999995 444433
No 190
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=23.20 E-value=90 Score=15.58 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=12.3
Q ss_pred EecCHHHHHHHHHHh
Q 033994 74 KFASEAAAGEAIKEM 88 (106)
Q Consensus 74 ~f~~~~~a~~al~~l 88 (106)
.|.+.++.+.|+..+
T Consensus 9 ~F~~~~e~k~av~~y 23 (67)
T PF03108_consen 9 TFPSKEEFKEAVREY 23 (67)
T ss_pred EECCHHHHHHHHHHH
Confidence 588999999998754
No 191
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=23.10 E-value=2.3e+02 Score=18.73 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=41.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccC-CeeEEEEeecCC--CCCeeeEEEEEecCHHHHHHHHHHh
Q 033994 26 RTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRV--TGQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~--~~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
.-++.|.-+|-...++-++++|++.| .|..-.+..+.. ......|..+......-.+.++..+
T Consensus 118 pL~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S~y~~l~L~g~~rl~daL~HL 183 (245)
T PF12623_consen 118 PLEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDSRYVDLTLTGTVRLADALNHL 183 (245)
T ss_pred ceEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCCcceEEEEeeeEEHHHHHhhh
Confidence 45677778888888999999999998 555555555542 1112336667777666666666543
No 192
>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens [].; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.
Probab=23.00 E-value=1.3e+02 Score=15.57 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=14.4
Q ss_pred EEEEEecCHHHHHHHHHHh
Q 033994 70 YGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 70 ~~fv~f~~~~~a~~al~~l 88 (106)
..-|.|.+...|+.+.+.+
T Consensus 4 ~l~i~f~s~~~A~ii~~sL 22 (76)
T PF09341_consen 4 TLEIPFESEEKAEIIYRSL 22 (76)
T ss_dssp EEEEE-SSHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHh
Confidence 4668899999999888755
No 193
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=22.98 E-value=49 Score=18.25 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=17.3
Q ss_pred CCCceEEEcCCCCCCcHHHHH
Q 033994 24 NSRTKLFIGGLSYDTNETVLK 44 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~ 44 (106)
.+.+.|.+.+||..+..+.|+
T Consensus 21 ~G~~~i~~~~Lp~~~d~~Sl~ 41 (104)
T PF13600_consen 21 AGENEIIFEGLPPSLDPDSLR 41 (104)
T ss_pred CCceEEEEeCCCcccCCCcEE
Confidence 356799999999999887764
No 194
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.72 E-value=2.6e+02 Score=20.49 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=41.5
Q ss_pred EcCCCCCCc---HHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEE
Q 033994 31 IGGLSYDTN---ETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 31 v~~lp~~~~---~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l 98 (106)
|+||+.-.. ...++++-.+||++-.+.+-. .-.|...+.+.|+.++.. ++..+.+|..
T Consensus 37 IGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 37 IGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred cccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 577766533 455666666899999777732 246888899999999985 7777777764
No 195
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=20.53 E-value=2.1e+02 Score=17.11 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=16.2
Q ss_pred eeeEEEEEecCHHHHHHHHHHh
Q 033994 67 SRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 67 ~~g~~fv~f~~~~~a~~al~~l 88 (106)
..|...+-|.+.++|++..+..
T Consensus 113 pMg~~~~aF~~~~~A~~F~~~~ 134 (149)
T PF05573_consen 113 PMGPDLIAFASKEDAEAFAKEH 134 (149)
T ss_dssp TTS--EEEES-HHHHHHHHHHT
T ss_pred CCCCcccccCCHHHHHHHHHHc
Confidence 3468899999999999999874
No 196
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=20.51 E-value=1.2e+02 Score=14.25 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=20.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccCC
Q 033994 27 TKLFIGGLSYDTNETVLKDAFGQHGE 52 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~ 52 (106)
..+++.+........++.+.+..+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 35677777667888999999998875
Done!