Query 033995
Match_columns 106
No_of_seqs 94 out of 96
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 14:27:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033995.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033995hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gqb_A Conserved hypothetical 28.8 48 0.0016 24.1 3.2 13 14-26 8-20 (130)
2 2wno_A Tumor necrosis factor-i 13.8 39 0.0013 22.8 0.0 14 70-83 133-146 (149)
3 2k0l_A Outer membrane protein 12.0 1.2E+02 0.0041 20.7 2.1 8 14-21 188-195 (216)
4 1no5_A Hypothetical protein HI 11.0 50 0.0017 21.3 -0.2 9 15-23 30-38 (114)
5 1wot_A Putative minimal nucleo 10.9 46 0.0016 21.0 -0.4 7 15-21 28-34 (98)
6 2k7m_A GAP junction alpha-5 pr 9.3 3.3E+02 0.011 18.9 3.6 24 62-85 29-54 (109)
7 1ylq_A Putative nucleotidyltra 8.8 60 0.002 20.4 -0.4 7 15-21 20-26 (96)
8 1r5s_A GAP junction alpha-1 pr 8.3 3.6E+02 0.012 19.4 3.5 15 68-82 53-67 (132)
9 1tba_A TAFII230, transcription 8.2 95 0.0033 20.3 0.4 15 6-20 3-17 (67)
10 1smz_A Transportan in bicellar 8.0 69 0.0024 17.7 -0.3 8 13-20 6-13 (27)
No 1
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=28.79 E-value=48 Score=24.10 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=9.0
Q ss_pred cccccCCCCCCCC
Q 033995 14 LGYLFSDGEAPKP 26 (106)
Q Consensus 14 LGYLFGsge~p~~ 26 (106)
++=|||+.++..+
T Consensus 8 ~~kIfg~~~~aa~ 20 (130)
T 2gqb_A 8 MSAIFGDSAAASP 20 (130)
T ss_dssp HHHHTCCCSSCTT
T ss_pred HHHHhCCcccccC
Confidence 4568998876543
No 2
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=13.84 E-value=39 Score=22.77 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=0.0
Q ss_pred cCCCcccceeccCC
Q 033995 70 ADGQNTGNFITDRP 83 (106)
Q Consensus 70 ~~gQN~GNfiTdrp 83 (106)
.-.|||+|||+.|-
T Consensus 133 ~~~~~c~n~~~g~~ 146 (149)
T 2wno_A 133 TTSTGNKNFLAGRF 146 (149)
T ss_dssp --------------
T ss_pred ccccCCCceecccc
Confidence 44689999998763
No 3
>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae}
Probab=11.96 E-value=1.2e+02 Score=20.73 Aligned_cols=8 Identities=25% Similarity=0.638 Sum_probs=6.1
Q ss_pred cccccCCC
Q 033995 14 LGYLFSDG 21 (106)
Q Consensus 14 LGYLFGsg 21 (106)
|+|-||..
T Consensus 188 l~Y~Fg~~ 195 (216)
T 2k0l_A 188 VSYRFGQE 195 (216)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 78889854
No 4
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=10.97 E-value=50 Score=21.27 Aligned_cols=9 Identities=11% Similarity=0.158 Sum_probs=6.5
Q ss_pred ccccCCCCC
Q 033995 15 GYLFSDGEA 23 (106)
Q Consensus 15 GYLFGsge~ 23 (106)
=|||||-..
T Consensus 30 v~LFGS~Ar 38 (114)
T 1no5_A 30 VWAFGSRVK 38 (114)
T ss_dssp EEEEGGGTT
T ss_pred EEEEeccCC
Confidence 489998544
No 5
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=10.87 E-value=46 Score=21.01 Aligned_cols=7 Identities=14% Similarity=0.064 Sum_probs=5.2
Q ss_pred ccccCCC
Q 033995 15 GYLFSDG 21 (106)
Q Consensus 15 GYLFGsg 21 (106)
=|||||-
T Consensus 28 v~LFGS~ 34 (98)
T 1wot_A 28 VRVFGSV 34 (98)
T ss_dssp CEECSHH
T ss_pred EEEEccc
Confidence 4899973
No 6
>2k7m_A GAP junction alpha-5 protein; cell junction, cell membrane, membrane, transmembrane, membrane protein; NMR {Rattus norvegicus}
Probab=9.27 E-value=3.3e+02 Score=18.91 Aligned_cols=24 Identities=8% Similarity=0.231 Sum_probs=17.5
Q ss_pred CCCCcccc--cCCCcccceeccCCCc
Q 033995 62 TSMNNYMR--ADGQNTGNFITDRPST 85 (106)
Q Consensus 62 ~~~Nny~r--~~gQN~GNfiTdrpst 85 (106)
..+++|+. +.-||+.|+-|.|=..
T Consensus 29 k~~~~~~~~laS~qN~an~~aEq~~~ 54 (109)
T 2k7m_A 29 KFFSDFSNNMGSRKNPDPLATEEVPN 54 (109)
T ss_dssp CSSTTSCSTTSSCSCCCSSSSSCCSS
T ss_pred cccccccccchhhhhhhhhhhhcccc
Confidence 35677755 5579999999887544
No 7
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=8.76 E-value=60 Score=20.38 Aligned_cols=7 Identities=29% Similarity=0.477 Sum_probs=4.8
Q ss_pred ccccCCC
Q 033995 15 GYLFSDG 21 (106)
Q Consensus 15 GYLFGsg 21 (106)
=|||||-
T Consensus 20 v~LFGS~ 26 (96)
T 1ylq_A 20 IYLYGSV 26 (96)
T ss_dssp EEEESHH
T ss_pred EEEEEEE
Confidence 3788873
No 8
>1r5s_A GAP junction alpha-1 protein; CX43CT, membrane protein; NMR {Rattus norvegicus} SCOP: f.50.1.1
Probab=8.33 E-value=3.6e+02 Score=19.41 Aligned_cols=15 Identities=27% Similarity=0.393 Sum_probs=11.7
Q ss_pred cccCCCcccceeccC
Q 033995 68 MRADGQNTGNFITDR 82 (106)
Q Consensus 68 ~r~~gQN~GNfiTdr 82 (106)
..+.-||.-||.|++
T Consensus 53 ~laSEQNWAN~atEq 67 (132)
T 1r5s_A 53 KQASEQNWANYSAEQ 67 (132)
T ss_dssp CCSCSCSSCCTTCCH
T ss_pred cchhhhhhhhhhhhh
Confidence 445579999999954
No 9
>1tba_A TAFII230, transcription initiation factor IID 230K chain; complex (transcription factors), TAF, TAFII230, solution structure; NMR {Drosophila melanogaster} SCOP: a.15.1.1
Probab=8.19 E-value=95 Score=20.30 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=12.0
Q ss_pred cCCCCccccccccCC
Q 033995 6 SSGGGQSSLGYLFSD 20 (106)
Q Consensus 6 SsGGGQSSLGYLFGs 20 (106)
|-|+|-+-.|+|||-
T Consensus 3 s~g~g~~LtGfLFGN 17 (67)
T 1tba_A 3 SIGNGLDLTGILFGN 17 (67)
T ss_dssp CSSCSCCCTTHHHHC
T ss_pred CCCCCcceeeeeecc
Confidence 556788889999985
No 10
>1smz_A Transportan in bicellar solution with [DMPC]/[DHPC]=0.33; transport protein; NMR {Synthetic} SCOP: j.6.1.1
Probab=8.02 E-value=69 Score=17.69 Aligned_cols=8 Identities=50% Similarity=0.928 Sum_probs=5.9
Q ss_pred ccccccCC
Q 033995 13 SLGYLFSD 20 (106)
Q Consensus 13 SLGYLFGs 20 (106)
|-|||.|.
T Consensus 6 SAGYLLGp 13 (27)
T 1smz_A 6 SAGYLLGK 13 (27)
T ss_dssp HHTTTTTT
T ss_pred ccceeecc
Confidence 56888874
Done!