BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033996
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q39236|T2AG_ARATH Transcription initiation factor IIA subunit 2 OS=Arabidopsis
thaliana GN=TFIIA-S PE=2 SV=2
Length = 106
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 95/106 (89%), Positives = 103/106 (97%)
Query: 1 MATFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK 60
MATFELYRRSTIGMCLTETLDEMVQ+GTL+PELAIQVLVQFDKSMTEALE+QVK+KVSIK
Sbjct: 1 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60
Query: 61 GHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSKLLSQ 106
GHLHTYRFCDNVWTFILQDA+FKS++ QE V RVKIVACDSKLL+Q
Sbjct: 61 GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106
>sp|Q0DLD3|T2AG_ORYSJ Transcription initiation factor IIA subunit 2 OS=Oryza sativa
subsp. japonica GN=TFIIAy PE=3 SV=1
Length = 106
Score = 196 bits (498), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/106 (88%), Positives = 99/106 (93%)
Query: 1 MATFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK 60
MATFELYRRSTIGMCLTETLDEMV +GTL+PELAIQVLVQFDKSMTEALE QVKSKVSIK
Sbjct: 1 MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60
Query: 61 GHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSKLLSQ 106
GHLHTYRFCDNVWTFIL +A FK+EE E VG+VKIVACDSKLLSQ
Sbjct: 61 GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106
>sp|A2XZI2|T2AG_ORYSI Transcription initiation factor IIA subunit 2 OS=Oryza sativa
subsp. indica GN=TFIIAy PE=3 SV=2
Length = 106
Score = 196 bits (498), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/106 (88%), Positives = 99/106 (93%)
Query: 1 MATFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK 60
MATFELYRRSTIGMCLTETLDEMV +GTL+PELAIQVLVQFDKSMTEALE QVKSKVSIK
Sbjct: 1 MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60
Query: 61 GHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSKLLSQ 106
GHLHTYRFCDNVWTFIL +A FK+EE E VG+VKIVACDSKLLSQ
Sbjct: 61 GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106
>sp|O74948|T2AG_SCHPO Transcription initiation factor IIA subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=toa2 PE=3 SV=2
Length = 109
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 77/99 (77%)
Query: 4 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHL 63
+ELYRRS+IG+ LT+ LD+++ G ++P+LA++VL FDKSMTEAL +V+S+++ KGHL
Sbjct: 5 YELYRRSSIGISLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFKGHL 64
Query: 64 HTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSK 102
TYRFCD VWTFI+++ F+ + T +++IVAC ++
Sbjct: 65 DTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVACATR 103
>sp|Q90YG6|T2AG_ONCMY Transcription initiation factor IIA subunit 2 OS=Oncorhynchus
mykiss GN=gtf2a2 PE=3 SV=1
Length = 108
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 74/99 (74%)
Query: 4 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHL 63
++LYR +T+G L E+LDE++Q +TP+LA+QVL+QFDK++ AL +V+++V+ KG L
Sbjct: 3 YQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALANRVRNRVNFKGSL 62
Query: 64 HTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSK 102
+TYRFCDNVWTF+L D F+ V +VKIVACD K
Sbjct: 63 NTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGK 101
>sp|Q9IA78|T2AG_PAROL Transcription initiation factor IIA subunit 2 OS=Paralichthys
olivaceus GN=gtf2a2 PE=3 SV=1
Length = 111
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 75/99 (75%)
Query: 4 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHL 63
++LYR +T+G L E+LDE++Q +TP+LA+QVL+QFDK++ AL ++V+++V+ +G L
Sbjct: 3 YQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALASRVRNRVNFRGSL 62
Query: 64 HTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSK 102
+TYRFCDNVWTF+L D F+ V +VKIVACD K
Sbjct: 63 NTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGK 101
>sp|O08950|T2AG_RAT Transcription initiation factor IIA subunit 2 OS=Rattus norvegicus
GN=Gtf2a2 PE=2 SV=1
Length = 109
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 75/99 (75%)
Query: 4 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHL 63
++LYR +T+G L E+LDE++Q+ +TP+LA+QVL+QFDK++ AL +V+++V+ +G L
Sbjct: 3 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINSALAQRVRNRVNFRGSL 62
Query: 64 HTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSK 102
+TYRFCDNVWTF+L D F+ V +VKIVACD K
Sbjct: 63 NTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGK 101
>sp|Q80ZM7|T2AG_MOUSE Transcription initiation factor IIA subunit 2 OS=Mus musculus
GN=Gtf2a2 PE=2 SV=2
Length = 109
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 75/99 (75%)
Query: 4 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHL 63
++LYR +T+G L E+LDE++Q+ +TP+LA+QVL+QFDK++ AL +V+++V+ +G L
Sbjct: 3 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINSALAQRVRNRVNFRGSL 62
Query: 64 HTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSK 102
+TYRFCDNVWTF+L D F+ V +VKIVACD K
Sbjct: 63 NTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGK 101
>sp|B7Q1Q9|T2AG_IXOSC Transcription initiation factor IIA subunit 2 OS=Ixodes scapularis
GN=IscW_ISCW010050 PE=3 SV=1
Length = 118
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 80/103 (77%), Gaps = 5/103 (4%)
Query: 3 TFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK-G 61
+++LYR +T+G L E+LDE++Q G +TP LA++VL+QFDK++ AL +VK++++ K G
Sbjct: 2 SYQLYRNTTLGNTLQESLDELIQCGQITPHLALKVLLQFDKAINNALANRVKTRLTFKAG 61
Query: 62 HLHTYRFCDNVWTFILQDALFKSEELQETV--GRVKIVACDSK 102
HL TYRFCDNVWTF+L+D F+ E+QE V +VKIVACD K
Sbjct: 62 HLSTYRFCDNVWTFVLKDVEFR--EVQELVKADKVKIVACDGK 102
>sp|P52657|T2AG_HUMAN Transcription initiation factor IIA subunit 2 OS=Homo sapiens
GN=GTF2A2 PE=1 SV=1
Length = 109
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 75/99 (75%)
Query: 4 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHL 63
++LYR +T+G L E+LDE++Q+ +TP+LA+QVL+QFDK++ AL +V+++V+ +G L
Sbjct: 3 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRGSL 62
Query: 64 HTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSK 102
+TYRFCDNVWTF+L D F+ V +VKIVACD K
Sbjct: 63 NTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGK 101
>sp|Q54ND1|T2AG_DICDI Transcription initiation factor IIA subunit 2 OS=Dictyostelium
discoideum GN=gtf2a2 PE=3 SV=1
Length = 115
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 76/101 (75%), Gaps = 1/101 (0%)
Query: 4 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHL 63
+ELYR+STIG LT+TL+E++ N ++ L ++L QFDK++ EAL VK+K + KG L
Sbjct: 8 YELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAKTTFKGSL 67
Query: 64 HTYRFCDNVWTFILQDALFKSEELQ-ETVGRVKIVACDSKL 103
HTYRFCD+VWTFIL++A FK+E + V RVKIVACD+ +
Sbjct: 68 HTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVACDANV 108
>sp|P52656|T2AG_DROME Transcription initiation factor IIA subunit 2 OS=Drosophila
melanogaster GN=TfIIA-S PE=1 SV=1
Length = 106
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 73/101 (72%), Gaps = 1/101 (0%)
Query: 3 TFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK-G 61
+++LYR +T+G L E+LDE++Q G +TP LA +VL+QFDKS+ AL +VK++V+ K G
Sbjct: 2 SYQLYRNTTLGNTLQESLDELIQYGQITPGLAFKVLLQFDKSINNALNQRVKARVTFKAG 61
Query: 62 HLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSK 102
L+TYRFCDNVWT +L D F+ V +VKIVACD K
Sbjct: 62 KLNTYRFCDNVWTLMLNDVEFREVHEIVKVDKVKIVACDGK 102
>sp|Q5BB99|T2AG_EMENI Transcription initiation factor IIA subunit 2 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=toa2 PE=3 SV=1
Length = 111
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 77/102 (75%), Gaps = 1/102 (0%)
Query: 2 ATFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKG 61
A +ELYR S++G+ LT+TLD+++ G + P+LA+++L FD+ +TE L +V+++++ KG
Sbjct: 5 AYYELYRGSSLGLSLTDTLDDLINEGRIEPQLAMKILSTFDRVITEVLADKVRTRLTFKG 64
Query: 62 HLHTYRFCDNVWTFILQDALFKSEELQE-TVGRVKIVACDSK 102
HL TYRFCD VWTF+++D FK + Q + +VKIV+C+SK
Sbjct: 65 HLDTYRFCDEVWTFLIKDVNFKLDNQQTISADKVKIVSCNSK 106
>sp|C7ZPG2|T2AG_NECH7 Transcription initiation factor IIA subunit 2 OS=Nectria
haematococca (strain 77-13-4 / ATCC MYA-4622 / FGSC 9596
/ MPVI) GN=toa2 PE=3 SV=1
Length = 114
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 77/101 (76%), Gaps = 2/101 (1%)
Query: 4 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHL 63
+ELYRRS+IG+ LT+TLD+++ + + P+LA+++L FD+++TEAL+ VK+++ KG L
Sbjct: 9 YELYRRSSIGLALTDTLDDLISDERINPQLAMKILGNFDQAITEALQKNVKARLQFKGSL 68
Query: 64 HTYRFCDNVWTFILQDALFKSEELQE--TVGRVKIVACDSK 102
TYRFCD VWTF++++ FK + + T +VKIV+C++K
Sbjct: 69 DTYRFCDEVWTFLIKNVTFKMDTGGQAVTANKVKIVSCNAK 109
>sp|P0CR84|T2AG_CRYNJ Transcription initiation factor IIA subunit 2 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=TOA2 PE=3 SV=1
Length = 127
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 72/106 (67%), Gaps = 8/106 (7%)
Query: 4 FELYRRST---IGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK 60
+E YR S IG LT+ LDE++ G + P+LA++VL QFDKS+TE L+ VK+K +IK
Sbjct: 8 YEFYRGSRHVHIGTALTDALDELITQGDIPPQLAMRVLQQFDKSLTECLQKGVKNKTTIK 67
Query: 61 GHLHTYRFCDNVWTFILQDALFKSEELQE-----TVGRVKIVACDS 101
GHL TYR CD+VWTF+++D FK E + T ++KIVAC S
Sbjct: 68 GHLSTYRLCDDVWTFVVKDPQFKMEGVGAGSEMVTGSKIKIVACKS 113
>sp|P0CR85|T2AG_CRYNB Transcription initiation factor IIA subunit 2 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=TOA2 PE=3 SV=1
Length = 127
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 72/106 (67%), Gaps = 8/106 (7%)
Query: 4 FELYRRST---IGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK 60
+E YR S IG LT+ LDE++ G + P+LA++VL QFDKS+TE L+ VK+K +IK
Sbjct: 8 YEFYRGSRHVHIGTALTDALDELITQGDIPPQLAMRVLQQFDKSLTECLQKGVKNKTTIK 67
Query: 61 GHLHTYRFCDNVWTFILQDALFKSEELQE-----TVGRVKIVACDS 101
GHL TYR CD+VWTF+++D FK E + T ++KIVAC S
Sbjct: 68 GHLSTYRLCDDVWTFVVKDPQFKMEGVGAGSEMVTGSKIKIVACKS 113
>sp|A4QW40|T2AG_MAGO7 Transcription initiation factor IIA subunit 2 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=TOA2 PE=3
SV=1
Length = 116
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 76/101 (75%), Gaps = 2/101 (1%)
Query: 4 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHL 63
+ELYRR+++G+CLT+ LD+++ N + P+LA+++L FD+ + E L+ +VK+++ KG L
Sbjct: 10 YELYRRTSLGICLTDALDDLITNDRINPQLAMKILANFDRVVAETLQEKVKARLQFKGAL 69
Query: 64 HTYRFCDNVWTFILQDALFKSEELQETV--GRVKIVACDSK 102
YRFCD+VWTF++++ FK + +T+ +VKIV+C++K
Sbjct: 70 DNYRFCDDVWTFVIKNINFKLDGGNQTIQADKVKIVSCNAK 110
>sp|P32774|T2AG_YEAST Transcription initiation factor IIA subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TOA2 PE=1
SV=1
Length = 122
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 70/113 (61%), Gaps = 14/113 (12%)
Query: 4 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHL 63
+ELYRRSTIG L + LD ++ +G + LA++VL FDK + E L+ +SK+++KG+L
Sbjct: 7 YELYRRSTIGNSLVDALDTLISDGRIEASLAMRVLETFDKVVAETLKDNTQSKLTVKGNL 66
Query: 64 HTYRFCDNVWTFILQDALFKSEELQE--------------TVGRVKIVACDSK 102
TY FCD+VWTFI+++ E+ +V +++IVAC+SK
Sbjct: 67 DTYGFCDDVWTFIVKNCQVTVEDSHRDASQNGSGDSQSVISVDKLRIVACNSK 119
>sp|Q9BIB4|YMYD_CAEEL Transcription initiation factor IIA small chain homolog
OS=Caenorhabditis elegans GN=B0336.13 PE=3 SV=1
Length = 139
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 3/105 (2%)
Query: 1 MATFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSI- 59
M+++ LYR +T+G L +TL++M G LT LA +VL QFDKSM + + K K++
Sbjct: 1 MSSYALYRGTTLGQALDKTLEDMESEGLLTKSLASKVLQQFDKSMNKQISRLPKEKMNFC 60
Query: 60 KGHLHTYRFCDNVWTFILQDALFKSEE--LQETVGRVKIVACDSK 102
L TYR+CDNVWTFIL + K + E + ++K+VACD +
Sbjct: 61 ATQLLTYRYCDNVWTFILNNVTLKDPQRSFDEPIDKLKVVACDGR 105
>sp|C4QGM3|T2AG_SCHMA Transcription initiation factor IIA subunit 2 OS=Schistosoma
mansoni GN=Smp_071830 PE=3 SV=2
Length = 104
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 62/96 (64%)
Query: 1 MATFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK 60
M E+YR +T+G L E LDEM+ + L P + +V+ +FD+ ++ AL +VK+++S++
Sbjct: 1 MTYHEMYRSTTLGTTLREALDEMLAHNLLQPGMDHKVMQKFDQCISNALAKRVKNRLSLR 60
Query: 61 GHLHTYRFCDNVWTFILQDALFKSEELQETVGRVKI 96
GHL+TYR CDNVWT ++ D K TV +V +
Sbjct: 61 GHLNTYRNCDNVWTLVMNDVEIKDSSAIMTVDKVSL 96
>sp|Q9W5B9|T2AH_DROME Transcription initiation factor IIA subunit 2-2 OS=Drosophila
melanogaster GN=TfIIA-S-2 PE=3 SV=1
Length = 107
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
Query: 3 TFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKG- 61
++ YR +T+G L +TLDEM++ G +T ++A VL+++DKS++ AL+ S +S
Sbjct: 2 NYQHYRATTLGRTLQDTLDEMMERGDITKKIANLVLLRYDKSISTALKDHGTSNMSFTAE 61
Query: 62 HLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVAC 99
L T+R CDNVWT IL+DA F+ ++ V VKIVAC
Sbjct: 62 RLETFRCCDNVWTLILKDAEFREDQHSLKVDVVKIVAC 99
>sp|Q9NEX2|T2AG_CAEEL Transcription initiation factor IIA subunit 2 OS=Caenorhabditis
elegans GN=Y111B2A.13 PE=3 SV=2
Length = 113
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 1/106 (0%)
Query: 2 ATFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKG 61
++LYR +T+G L +TLD+ V + + L+ +++ FDKS+ + L + K+KV+ +
Sbjct: 4 PNYQLYRNTTLGQALQKTLDDFVGDQMIPDSLSKKIMDSFDKSINKILPHKAKNKVNFRA 63
Query: 62 -HLHTYRFCDNVWTFILQDALFKSEELQETVGRVKIVACDSKLLSQ 106
L YR+CDNVWTFI++ + TV R+KIVACD + Q
Sbjct: 64 DKLRAYRYCDNVWTFIVEQIDLRDAVEGGTVDRLKIVACDGQTKGQ 109
>sp|Q253M6|GLGB_CHLFF 1,4-alpha-glucan branching enzyme GlgB OS=Chlamydophila felis
(strain Fe/C-56) GN=glgB PE=3 SV=1
Length = 721
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 38 LVQFDKSMTEALETQVKSKVSIKGHLHTYRF---CDNVWTFILQDALF 82
L FD EAL V K + H HTY F C+ V F+L ALF
Sbjct: 343 LAHFDG---EALYESVDHKEPLHPHWHTYTFDYRCNEVVNFLLGSALF 387
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,888,481
Number of Sequences: 539616
Number of extensions: 996979
Number of successful extensions: 2733
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2703
Number of HSP's gapped (non-prelim): 25
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)