BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033997
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EPF|3 Chain 3, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 2
Length = 235
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 38 FLFSHAMNIVVGPKEDRQLMTGLHTVADV-FCSDCRVVLGWKYERAYEET--QKYKEGKF 94
L S+A PK ++ M G H + D+ S C +V+ W Y +T + EG +
Sbjct: 130 LLVSYAPPGAEAPKSRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQTINDSFTEGGY 189
Query: 95 I 95
I
Sbjct: 190 I 190
>pdb|1EAH|3 Chain 3, Pv2l Complexed With Antiviral Agent Sch48973
Length = 238
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 38 FLFSHAMNIVVGPKEDRQLMTGLHTVADV-FCSDCRVVLGWKYERAYEET--QKYKEGKF 94
L S+A PK ++ M G H + D+ S C +V+ W Y +T + EG +
Sbjct: 130 LLVSYAPPGAEAPKSRKEAMLGTHVIWDIGLQSSCTMVVPWISNTTYRQTINDSFTEGGY 189
Query: 95 I 95
I
Sbjct: 190 I 190
>pdb|1EV1|3 Chain 3, Echovirus 1
Length = 239
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 38 FLFSHAMNIVVGPKEDRQLMTGLHTVADV-FCSDCRVVLGWKYERAYE--ETQKYKEGKF 94
FL S+A PK + M G H V DV S C + + W + Y E Y F
Sbjct: 131 FLLSYAPPGAGAPKTRKDAMLGTHVVWDVGLQSSCVLCIPWISQTHYRFVEKDPYTNAGF 190
Query: 95 I 95
+
Sbjct: 191 V 191
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 7 PRLYSCCNCRNHVALHDDVISKSFQGRNGRAFLFSHAMNIVV 48
P + N NH + + +I +++ NG F ++ N++V
Sbjct: 352 PAFHGIMNLENHNVVANGLIHQTYDANNGDGIEFGNSQNVMV 393
>pdb|2A1I|A Chain A, Crystal Structure Of The Central Domain Of Human Ercc1
Length = 146
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 21 LHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYE 80
LH D I Q G+ F + + V K+ +Q + L + +DC ++L W E
Sbjct: 67 LHPDYIHGRLQSL-GKNFAL-RVLLVQVDVKDPQQALKELAKMC--ILADCTLILAWSPE 122
Query: 81 RA--YEETQKYKEGK---FILEK 98
A Y ET K E K ++EK
Sbjct: 123 EAGRYLETYKAYEQKPADLLMEK 145
>pdb|2JPD|A Chain A, Solution Structure Of The Ercc1 Central Domain
Length = 135
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 21 LHDDVISKSFQGRNGRAFLFSHAMNIVVGPKEDRQLMTGLHTVADVFCSDCRVVLGWKYE 80
LH D I Q G+ F + + V K+ +Q + L + +DC ++L W E
Sbjct: 54 LHPDYIHGRLQSL-GKNFAL-RVLLVQVDVKDPQQALKELAKMC--ILADCTLILAWSPE 109
Query: 81 RA--YEETQKYKEGK 93
A Y ET K E K
Sbjct: 110 EAGRYLETYKAYEQK 124
>pdb|1MUK|A Chain A, Reovirus Lambda3 Native Structure
pdb|1MWH|A Chain A, Reovirus Polymerase Lambda3 Bound To Mrna Cap Analog
pdb|1N1H|A Chain A, Initiation Complex Of Polymerase Lambda3 From Reovirus
pdb|1N35|A Chain A, Lambda3 Elongation Complex With Four Phosphodiester Bond
Formed
pdb|1N38|A Chain A, Reovirus Polymerase Lambda3 Elongation Complex With One
Phosphodiester Bond Formed
pdb|1UON|A Chain A, Reovirus Polymerase Lambda-3 Localized By Electron
Cryomicroscopy Of Virions At 7.6-a Resolution
Length = 1267
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 75 LGWKYERAYEETQKYKEGKFIL 96
GWKY+ AY+ T +Y + FI
Sbjct: 767 FGWKYDIAYDGTAEYLKLYFIF 788
>pdb|2CSE|1 Chain 1, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 1267
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 75 LGWKYERAYEETQKYKEGKFIL 96
GWKY+ AY+ T +Y + FI
Sbjct: 767 FGWKYDIAYDGTAEYLKLYFIF 788
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 67 FCSDCRVVLGWKYERAYEETQKYKEGKFI 95
C + R +G ERA T YK G FI
Sbjct: 213 ICENNRYGMGTSVERAAASTDYYKRGDFI 241
>pdb|1U9T|A Chain A, Crystal Structure Analysis Of Chus, An E. Coli Heme
Oxygenase
Length = 354
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 13 CNCRNHVALHDDVISKSFQGRNGRAFL 39
C CRN A+H+ V + + Q NG A L
Sbjct: 76 CICRNEYAVHEQVGTFTNQHLNGHAGL 102
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 67 FCSDCRVVLGWKYERAYEETQKYKEGKFI 95
C + R +G ERA T YK G FI
Sbjct: 213 ICENNRYGMGTSVERAAASTDYYKRGDFI 241
>pdb|2HQ2|A Chain A, Structure Of The Escherichia Coli O157:h7 Heme Oxygenase
Chus In Complex With Heme
Length = 354
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 13 CNCRNHVALHDDVISKSFQGRNGRAFL 39
C CRN A+H+ V + + Q NG A L
Sbjct: 76 CICRNEYAVHEQVGTFTNQHLNGHAGL 102
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 67 FCSDCRVVLGWKYERAYEETQKYKEGKFI 95
C + R +G ERA T YK G FI
Sbjct: 196 ICENNRYGMGTSVERAAASTDYYKRGDFI 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,074,281
Number of Sequences: 62578
Number of extensions: 106782
Number of successful extensions: 243
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 13
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)