Query 033999
Match_columns 106
No_of_seqs 105 out of 162
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 14:32:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nvp_D Transcription initiatio 100.0 7.3E-55 2.5E-59 302.2 12.0 103 4-106 2-104 (108)
2 1nh2_D Transcription initiatio 100.0 3.3E-53 1.1E-57 298.7 12.4 102 3-104 5-120 (121)
3 2o97_B NS1, HU-1, DNA-binding 66.4 19 0.00066 22.3 5.8 42 17-60 4-45 (90)
4 1mul_A NS2, HU-2, DNA binding 64.1 17 0.00059 22.5 5.2 41 18-60 5-45 (90)
5 1p71_A DNA-binding protein HU; 59.1 17 0.00057 22.8 4.5 40 19-60 6-45 (94)
6 1b8z_A Protein (histonelike pr 57.1 19 0.00065 22.2 4.5 40 19-60 6-45 (90)
7 3c4i_A DNA-binding protein HU 55.3 21 0.00071 22.6 4.5 38 21-60 8-45 (99)
8 2xf7_A GP23.1; viral protein; 53.8 3.5 0.00012 24.2 0.5 28 12-39 16-43 (51)
9 3rhi_A DNA-binding protein HU; 53.0 22 0.00076 22.2 4.3 40 19-60 9-48 (93)
10 1bh9_B TAFII28; histone fold, 49.1 19 0.00064 23.2 3.5 35 2-36 7-41 (89)
11 3o18_A C-phycocyanin alpha sub 48.1 42 0.0015 23.5 5.6 43 5-47 117-160 (162)
12 1owf_B IHF-beta, integration H 46.8 40 0.0014 20.9 4.8 41 18-60 5-46 (94)
13 3fxd_A Protein ICMQ; helix bun 46.2 24 0.00082 21.2 3.4 24 15-38 12-35 (57)
14 4fmr_A Uncharacterized hypothe 46.1 30 0.001 26.3 4.8 37 15-51 34-71 (265)
15 1owf_A IHF-alpha, integration 44.4 34 0.0012 21.5 4.2 41 18-60 7-47 (99)
16 2np2_A HBB; protein-DNA comple 43.9 59 0.002 20.8 5.4 42 17-60 12-58 (108)
17 2p1h_A APAF-1, apoptotic prote 38.5 25 0.00084 21.7 2.8 26 15-40 23-48 (94)
18 2p12_A Hypothetical protein DU 38.3 62 0.0021 23.3 5.2 32 18-49 123-154 (176)
19 3ygs_P Procaspase 9; apoptosis 34.8 30 0.001 21.8 2.8 24 16-39 23-46 (97)
20 2pa8_L DNA-directed RNA polyme 31.5 74 0.0025 20.1 4.3 28 11-45 64-91 (92)
21 2j96_A Phycoerythrocyanin alph 31.2 1E+02 0.0035 21.4 5.3 43 5-47 117-160 (162)
22 3jv1_A P22 protein; MAM33 fami 30.0 66 0.0023 22.7 4.2 31 10-40 131-161 (182)
23 1s69_A Cyanoglobin, hemoglobin 29.2 92 0.0032 19.8 4.5 27 12-42 87-113 (124)
24 2vml_A Phycocyanin alpha chain 28.5 73 0.0025 22.2 4.2 43 5-47 115-160 (162)
25 2iie_A Integration HOST factor 28.2 36 0.0012 24.6 2.6 32 20-51 53-84 (204)
26 1xpp_A TA1416, DNA-directed RN 27.5 1E+02 0.0036 20.5 4.6 29 12-47 74-102 (115)
27 4a94_C Carboxypeptidase inhibi 26.7 20 0.0007 20.8 0.8 21 56-76 22-45 (53)
28 1exe_A Transcription factor 1; 26.0 41 0.0014 21.2 2.3 34 25-60 12-45 (99)
29 2e7g_A Putative ribosome-bindi 25.8 75 0.0026 21.1 3.7 29 6-34 12-40 (129)
30 2kwp_A Transcription elongatio 25.6 81 0.0028 21.2 3.8 51 15-68 4-61 (129)
31 1bdg_A Hexokinase; phosphotran 25.1 87 0.003 25.0 4.5 38 14-51 6-43 (451)
32 1kn1_A Allophycocyanin; helix- 25.1 97 0.0033 21.5 4.3 43 5-47 113-158 (160)
33 1p32_A Mitochondrial matrix pr 25.1 89 0.0031 22.3 4.2 31 10-40 156-186 (209)
34 3hzs_A Monofunctional glycosyl 24.4 69 0.0023 23.5 3.5 23 18-40 185-207 (209)
35 4e9m_A Nucleotide-binding olig 24.1 18 0.0006 25.6 0.2 27 16-42 43-69 (144)
36 1jf3_A Monomer hemoglobin comp 23.9 1.5E+02 0.0051 19.1 5.6 40 11-52 105-144 (147)
37 3hlz_A Uncharacterized protein 23.9 74 0.0025 24.4 3.6 36 17-53 180-215 (269)
38 3q23_A Virion RNA polymerase; 22.8 75 0.0026 28.9 3.9 68 10-80 815-897 (1118)
39 2wfu_B Probable insulin-like p 22.6 55 0.0019 16.5 1.9 15 12-26 6-20 (26)
40 1yqf_A Hypothetical protein LM 22.5 80 0.0027 22.6 3.5 31 10-40 152-182 (203)
41 4b4y_A Neuroglobin; transport 22.5 1.7E+02 0.0058 19.2 5.2 39 11-50 115-153 (154)
42 2bmm_A Thermostable hemoglobin 22.5 1.3E+02 0.0044 19.0 4.2 28 12-43 86-113 (123)
43 1sfk_A Core protein; alpha hel 22.4 1.2E+02 0.0042 18.7 3.9 22 28-49 49-70 (76)
44 3crd_A Raidd; caspase recruitm 22.3 49 0.0017 20.8 2.1 21 19-39 26-46 (100)
45 3lrd_A Major ampullate spidroi 22.2 2E+02 0.0068 19.9 7.1 47 5-51 37-83 (137)
46 3ukn_A Novel protein similar t 21.7 1.3E+02 0.0044 20.1 4.3 32 14-45 15-46 (212)
47 3vmt_A Monofunctional glycosyl 21.6 81 0.0028 24.1 3.5 24 17-40 237-260 (263)
48 2oif_A Horvu GLB1, non-legume 21.3 1.7E+02 0.0058 19.1 4.8 41 11-52 117-157 (162)
49 2zc2_A DNAD-like replication p 21.1 1.4E+02 0.0047 17.6 4.3 30 11-40 17-46 (78)
50 1tu9_A Hypothetical protein PA 20.7 1.7E+02 0.0059 18.5 6.3 39 11-52 93-131 (134)
51 1dgn_A Iceberg (protease inhib 20.3 90 0.0031 19.5 3.0 29 12-40 16-45 (89)
52 2jrr_A Uncharacterized protein 20.1 52 0.0018 20.2 1.8 16 88-104 8-23 (67)
53 1kn1_B Allophycocyanin; helix- 20.1 1.1E+02 0.0036 21.3 3.6 43 5-47 114-159 (161)
No 1
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=100.00 E-value=7.3e-55 Score=302.20 Aligned_cols=103 Identities=50% Similarity=0.899 Sum_probs=96.5
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhcccceEEeeeCccceeeCcEEEEEEcCeEEE
Q 033999 4 FELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFK 83 (106)
Q Consensus 4 y~lYR~stlG~aL~dtLdeli~~~~I~p~la~kIl~~FDk~i~~~L~~~vk~k~~~KG~L~tYr~cDnVWtf~lkn~~~k 83 (106)
|||||+|+||.||+||||||+++|.|+|+||++||++||+||+++|+++|++|++|||+|+|||||||||||+++||+|+
T Consensus 2 y~lYR~stiG~aL~dtLdEli~~~~Isp~la~kVL~~FDksi~~aL~~~vksk~sfKG~L~tYrfcDnVWTf~lkd~~fk 81 (108)
T 1nvp_D 2 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFR 81 (108)
T ss_dssp CGGGGSSHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred hhHHhhChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEeeccCCccccCcEEEEEEeceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceEeeeCeEEEEEecCCCCCC
Q 033999 84 SEELQETVGRVKIVACDSKLLSQ 106 (106)
Q Consensus 84 ~~~~~~~~~~lKIVAcd~~~~~~ 106 (106)
++++.+++|+|||||||++.+++
T Consensus 82 ~~~~~~~~d~vKIVAC~~~~~~~ 104 (108)
T 1nvp_D 82 EVTELIKVDKVKIVACDGKNTGS 104 (108)
T ss_dssp CSSCEEEEEEEEEEEEC------
T ss_pred eccceeecCeEEEEEeCCCCCCC
Confidence 99999999999999999998763
No 2
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=100.00 E-value=3.3e-53 Score=298.73 Aligned_cols=102 Identities=44% Similarity=0.820 Sum_probs=99.3
Q ss_pred hhHHHHhhhHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhcccceEEeeeCccceeeCcEEEEEEcCeEE
Q 033999 3 TFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALF 82 (106)
Q Consensus 3 ~y~lYR~stlG~aL~dtLdeli~~~~I~p~la~kIl~~FDk~i~~~L~~~vk~k~~~KG~L~tYr~cDnVWtf~lkn~~~ 82 (106)
||||||+|+||.||+||||||+++|+|+|+||++||++||++|+++|+++|++|++|||+|+|||||||||||+++||+|
T Consensus 5 ~y~lYR~StiG~aL~dtLdEli~~~~Isp~la~kVL~~FDksi~~aL~~~vksk~sfKG~L~tYrfcDnVWtfilkd~~f 84 (121)
T 1nh2_D 5 YYELYRRSTIGNSLVDALDTLISDGRIEASLAMRVLETFDKVVAETLKDNTQSKLTVKGNLDTYGFCDDVWTFIVKNCQV 84 (121)
T ss_dssp CCCGGGGSHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHSCCCEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred hHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEeeeccccccCcEEEEEEeceEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eec--------------ceEeeeCeEEEEEecCCCC
Q 033999 83 KSE--------------ELQETVGRVKIVACDSKLL 104 (106)
Q Consensus 83 k~~--------------~~~~~~~~lKIVAcd~~~~ 104 (106)
+++ ++.+++|+|||||||++.+
T Consensus 85 k~~~~~~~~~~~~~~~~~~~~~vdkvKIVAC~~k~~ 120 (121)
T 1nh2_D 85 TVEDSHRDASQNGSGDSQSVISVDKLRIVACNSKKS 120 (121)
T ss_dssp EEEC-------------CEEEEEEEEEEEEEESSCC
T ss_pred EeccccccccccccccCCceeecceEEEEEeCCCCC
Confidence 998 4689999999999999975
No 3
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=66.38 E-value=19 Score=22.31 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=31.4
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhcccceEEe
Q 033999 17 TETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK 60 (106)
Q Consensus 17 ~dtLdeli~~~~I~p~la~kIl~~FDk~i~~~L~~~vk~k~~~K 60 (106)
.|..+++-+..-+++..+..+++.|-..|.++|.+. .++.+.
T Consensus 4 ~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~g--~~V~l~ 45 (90)
T 2o97_B 4 SQLIDKIAAGADISKAAAGRALDAIIASVTESLKEG--DDVALV 45 (90)
T ss_dssp HHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHTT--CCEEET
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHCC--CeEEEC
Confidence 344555556778999999999999999999999873 345554
No 4
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=64.08 E-value=17 Score=22.49 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=31.2
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhcccceEEe
Q 033999 18 ETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK 60 (106)
Q Consensus 18 dtLdeli~~~~I~p~la~kIl~~FDk~i~~~L~~~vk~k~~~K 60 (106)
|..+++-+...+++..+..++..|-..|.++|.+. .++.+.
T Consensus 5 eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~g--~~V~l~ 45 (90)
T 1mul_A 5 QLIDVIAEKAELSKTQAKAALESTLAAITESLKEG--DAVQLV 45 (90)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT--CCEEET
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC--CeEEEc
Confidence 34444445567899999999999999999999872 345554
No 5
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=59.14 E-value=17 Score=22.79 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=30.0
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhcccceEEe
Q 033999 19 TLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK 60 (106)
Q Consensus 19 tLdeli~~~~I~p~la~kIl~~FDk~i~~~L~~~vk~k~~~K 60 (106)
..+++-+...+++..+..+++.|-..|.++|.+. .++.+.
T Consensus 6 li~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~g--~~V~l~ 45 (94)
T 1p71_A 6 LVDAVAEKASVTKKQADAVLTAALETIIEAVSSG--DKVTLV 45 (94)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTT--CCEEET
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC--CeEEec
Confidence 3344444456899999999999999999999873 345554
No 6
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=57.09 E-value=19 Score=22.23 Aligned_cols=40 Identities=23% Similarity=0.245 Sum_probs=30.2
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhcccceEEe
Q 033999 19 TLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK 60 (106)
Q Consensus 19 tLdeli~~~~I~p~la~kIl~~FDk~i~~~L~~~vk~k~~~K 60 (106)
..+++-+...+++..+..+++.|-..|.++|.+. .++.+.
T Consensus 6 li~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~g--~~V~l~ 45 (90)
T 1b8z_A 6 LIDRVAKKAGAKKKDVKLILDTILETITEALAKG--EKVQIV 45 (90)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTT--CCEEET
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhCC--CEEEEC
Confidence 3344444456899999999999999999999873 455554
No 7
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=55.28 E-value=21 Score=22.65 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=28.8
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhcccceEEe
Q 033999 21 DEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK 60 (106)
Q Consensus 21 deli~~~~I~p~la~kIl~~FDk~i~~~L~~~vk~k~~~K 60 (106)
+++-+...+++..+..+++.|-..|.++|.+. .++.+.
T Consensus 8 ~~ia~~~~lsk~~~~~~l~~~~~~i~~~L~~g--~~V~l~ 45 (99)
T 3c4i_A 8 DVLTQKLGSDRRQATAAVENVVDTIVRAVHKG--DSVTIT 45 (99)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTT--CCEEET
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC--CEEEEC
Confidence 33334446899999999999999999999773 345554
No 8
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=53.85 E-value=3.5 Score=24.18 Aligned_cols=28 Identities=32% Similarity=0.316 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q 033999 12 IGMCLTETLDEMVQNGTLTPELAIQVLV 39 (106)
Q Consensus 12 lG~aL~dtLdeli~~~~I~p~la~kIl~ 39 (106)
=|.++++-|.--++.|.|+.+-+.+|++
T Consensus 16 ~GT~~~~~mR~AV~~G~iTQ~E~D~I~~ 43 (51)
T 2xf7_A 16 DGTASEELLRVAVNAGDLTQEEADKIMS 43 (51)
T ss_dssp HTCCCHHHHHHHHHHTSSCHHHHHHHHT
T ss_pred cchhhHHHHHHHHhcCcccHHHHHHHHh
Confidence 3777888889999999999999888864
No 9
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=52.98 E-value=22 Score=22.22 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=29.8
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhcccceEEe
Q 033999 19 TLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK 60 (106)
Q Consensus 19 tLdeli~~~~I~p~la~kIl~~FDk~i~~~L~~~vk~k~~~K 60 (106)
.++.+-+...+++..+..+++.|-..|.++|.+. .++.+.
T Consensus 9 Li~~ia~~~~lsk~~~~~~v~~~~~~i~~~L~~g--~~V~l~ 48 (93)
T 3rhi_A 9 LIKNVAQNAEISQKEATVVVQTVVESITNTLAAG--EKVQLI 48 (93)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTT--CCEEET
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhCC--CEEEEc
Confidence 3344444456899999999999999999999873 345554
No 10
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=49.13 E-value=19 Score=23.16 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=25.9
Q ss_pred hhhHHHHhhhHHHHHHHHHHHHHHCCCCCHHHHHH
Q 033999 2 ATFELYRRSTIGMCLTETLDEMVQNGTLTPELAIQ 36 (106)
Q Consensus 2 ~~y~lYR~stlG~aL~dtLdeli~~~~I~p~la~k 36 (106)
.-|+.||+|++=.+=..=|-.-+.++.++++.+.-
T Consensus 7 ~Rye~~Rrs~f~k~~vKrl~~~~~~~~v~~~v~i~ 41 (89)
T 1bh9_B 7 NRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIA 41 (89)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHSSCCCHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHcCCCCCccHHHH
Confidence 45999999988666555555666688888887755
No 11
>3o18_A C-phycocyanin alpha subunit; phycobilisome, photosynthesis, light harvesting, cyanobacter; HET: CYC; 1.35A {Thermosynechococcus vulcanus} SCOP: a.1.1.3 PDB: 1i7y_A* 1on7_A* 1ktp_A* 3o2c_A* 3l0f_A* 1jbo_A* 3kvs_A* 3brp_A* 1phn_A* 2bv8_A* 1f99_A* 1gh0_A* 2uum_A* 1ha7_A* 1cpc_A* 2uul_C* 2uul_A* 2uun_A*
Probab=48.12 E-value=42 Score=23.49 Aligned_cols=43 Identities=19% Similarity=0.150 Sum_probs=33.6
Q ss_pred HHHHhhh-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 033999 5 ELYRRST-IGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTE 47 (106)
Q Consensus 5 ~lYR~st-lG~aL~dtLdeli~~~~I~p~la~kIl~~FDk~i~~ 47 (106)
|+||.-- =+.+..++|..|-..+.++|+.+..+..=||..|+.
T Consensus 117 e~y~algvp~~~~v~al~~mk~~~~ls~e~~~~~~~yfD~~i~~ 160 (162)
T 3o18_A 117 EINSTFDLSPSWYIEALKYIKANHGLTGQAAVEANAYIDYAINA 160 (162)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 6677622 234667788888877999999999999999998875
No 12
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=46.84 E-value=40 Score=20.87 Aligned_cols=41 Identities=10% Similarity=0.297 Sum_probs=30.8
Q ss_pred HHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHhhcccceEEe
Q 033999 18 ETLDEMVQN-GTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK 60 (106)
Q Consensus 18 dtLdeli~~-~~I~p~la~kIl~~FDk~i~~~L~~~vk~k~~~K 60 (106)
|..+++-+. ..+++..+..+++.|-..|.++|.+. .++.+.
T Consensus 5 eli~~ia~~~~~ls~~~~~~~l~~~~~~i~~~L~~g--~~V~l~ 46 (94)
T 1owf_B 5 ELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQG--ERIAIR 46 (94)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHTT--CCEEET
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCC--CeEEEc
Confidence 444445445 47999999999999999999999873 345554
No 13
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=46.15 E-value=24 Score=21.24 Aligned_cols=24 Identities=13% Similarity=0.382 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHH
Q 033999 15 CLTETLDEMVQNGTLTPELAIQVL 38 (106)
Q Consensus 15 aL~dtLdeli~~~~I~p~la~kIl 38 (106)
++-.||||-|++|.=..+--.+|.
T Consensus 12 aILkaLdeaIe~GPWe~SNFLRvI 35 (57)
T 3fxd_A 12 TILKALNDAIEKGPWDKSNFLRVI 35 (57)
T ss_dssp HHHHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHH
Confidence 334444555555544444444433
No 14
>4fmr_A Uncharacterized hypothetical protein; bacterial DNA binding protein, DUF4469 with IG-like fold, ST genomics; HET: MSE; 2.25A {Bacteroides vulgatus}
Probab=46.12 E-value=30 Score=26.26 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHh
Q 033999 15 CLTETLDEMVQNG-TLTPELAIQVLVQFDKSMTEALET 51 (106)
Q Consensus 15 aL~dtLdeli~~~-~I~p~la~kIl~~FDk~i~~~L~~ 51 (106)
.+.+.+++|..++ .+++.-...||..|.++|.+.|.+
T Consensus 34 t~~dIa~~ia~~~S~ls~~di~~vl~~l~~~~~e~L~~ 71 (265)
T 4fmr_A 34 DKEIILDRMVAKNPGVRRETMALGIELMEEVVAEALMN 71 (265)
T ss_dssp CHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 4678899998765 599999999999999999999988
No 15
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=44.39 E-value=34 Score=21.55 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=30.8
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhcccceEEe
Q 033999 18 ETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK 60 (106)
Q Consensus 18 dtLdeli~~~~I~p~la~kIl~~FDk~i~~~L~~~vk~k~~~K 60 (106)
|..+++-+..-+++..+..++..|-..|.++|.+. .++.+.
T Consensus 7 eli~~ia~~~~ls~~~~~~vl~~~~~~i~~~L~~G--~~V~l~ 47 (99)
T 1owf_A 7 EMSEYLFDKLGLSKRDAKELVELFFEEIRRALENG--EQVKLS 47 (99)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHTT--CCEEET
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC--CeEEec
Confidence 34444444556899999999999999999999873 345554
No 16
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=43.89 E-value=59 Score=20.78 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=32.5
Q ss_pred HHHHHHHH-----HCCCCCHHHHHHHHHHHHHHHHHHHHhhcccceEEe
Q 033999 17 TETLDEMV-----QNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK 60 (106)
Q Consensus 17 ~dtLdeli-----~~~~I~p~la~kIl~~FDk~i~~~L~~~vk~k~~~K 60 (106)
.|..+.+- +...+++..+..+++.|=..|.++|.+. .++.+.
T Consensus 12 ~eLi~~ia~~~~~~~~~lsk~~~~~vl~~~~~~i~~~L~~G--~~V~l~ 58 (108)
T 2np2_A 12 SDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSN--NVIEFR 58 (108)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTT--CEEEET
T ss_pred HHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHCC--CeEEec
Confidence 45555555 5677999999999999999999999873 345554
No 17
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=38.50 E-value=25 Score=21.71 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHH
Q 033999 15 CLTETLDEMVQNGTLTPELAIQVLVQ 40 (106)
Q Consensus 15 aL~dtLdeli~~~~I~p~la~kIl~~ 40 (106)
.....||.|++.|.||++....|..+
T Consensus 23 ~v~~lld~L~~~~vlt~~~~e~I~~~ 48 (94)
T 2p1h_A 23 KTSYIMDHMISDGFLTISEEEKVRNE 48 (94)
T ss_dssp CHHHHHHHHHHHTSSCHHHHHHHHTS
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHcC
Confidence 35689999999999999999999874
No 18
>2p12_A Hypothetical protein DUF402; APC7392, beta-barrel, rhodococcus SP. RHA1, structural genom 2, protein structure initiative; 1.63A {Rhodococcus SP} SCOP: b.175.1.1
Probab=38.27 E-value=62 Score=23.30 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=26.9
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q 033999 18 ETLDEMVQNGTLTPELAIQVLVQFDKSMTEAL 49 (106)
Q Consensus 18 dtLdeli~~~~I~p~la~kIl~~FDk~i~~~L 49 (106)
|=|++-.+.|.||++++.+.+....+++...-
T Consensus 123 DEL~~A~~~GlIs~e~ae~Alr~a~~~v~~i~ 154 (176)
T 2p12_A 123 DELMEAHTTGLLDTATAEQAILTATTAIDGIA 154 (176)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45667778999999999999999998887653
No 19
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.82 E-value=30 Score=21.84 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=21.4
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHH
Q 033999 16 LTETLDEMVQNGTLTPELAIQVLV 39 (106)
Q Consensus 16 L~dtLdeli~~~~I~p~la~kIl~ 39 (106)
..+.+|+|++.|.+|++..+.|..
T Consensus 23 ~~~vld~L~~~~vlt~~~~e~I~~ 46 (97)
T 3ygs_P 23 VDQLWDVLLSRELFRPHMIEDIQR 46 (97)
T ss_dssp CTTTHHHHHHTTSSCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHh
Confidence 345899999999999999999995
No 20
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=31.47 E-value=74 Score=20.13 Aligned_cols=28 Identities=7% Similarity=0.094 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 033999 11 TIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSM 45 (106)
Q Consensus 11 tlG~aL~dtLdeli~~~~I~p~la~kIl~~FDk~i 45 (106)
+--.+|.+|+++++. ....+.++|++++
T Consensus 64 ~p~~al~~a~~~l~~-------~~~~~~~~f~~~~ 91 (92)
T 2pa8_L 64 TPKDALLKAIENIRG-------MTSHYIDEIKGLT 91 (92)
T ss_dssp CHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 455799999999987 5667777777754
No 21
>2j96_A Phycoerythrocyanin alpha chain; electron transport, Z- to E-isomerization, transport, chromophore, bIle pigment, phycobilisome; HET: PVN; 2.25A {Mastigocladus laminosus} PDB: 2c7k_A* 2c7j_A* 2c7l_A*
Probab=31.24 E-value=1e+02 Score=21.41 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=30.7
Q ss_pred HHHHhh-hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 033999 5 ELYRRS-TIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTE 47 (106)
Q Consensus 5 ~lYR~s-tlG~aL~dtLdeli~~~~I~p~la~kIl~~FDk~i~~ 47 (106)
|+||.- .=+.+-..++..|-....++|+.+..|-.-||..|+.
T Consensus 117 eiy~algvp~~~~~~a~~~mk~~~~l~~e~~~ei~~yfD~~i~~ 160 (162)
T 2j96_A 117 EFNSALGLSPSWYIAALEFVRDNHGLTGDVAGEANTYINYAINA 160 (162)
T ss_dssp HHTTTTCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 455542 1223444667777777899999999999999999874
No 22
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=30.04 E-value=66 Score=22.67 Aligned_cols=31 Identities=10% Similarity=0.068 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q 033999 10 STIGMCLTETLDEMVQNGTLTPELAIQVLVQ 40 (106)
Q Consensus 10 stlG~aL~dtLdeli~~~~I~p~la~kIl~~ 40 (106)
..|-..|+++|.+++++.=|++++|..|..-
T Consensus 131 ~~LDe~Lq~~l~~yLeeRGI~~~la~fl~~y 161 (182)
T 3jv1_A 131 ADLEDHLVDSFTSYLSARGVNDTLANFIDQF 161 (182)
T ss_dssp GGSCHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4677899999999999999999999988653
No 23
>1s69_A Cyanoglobin, hemoglobin, HB; on 2 helical fold, heme, iron, cyanoba oxygen binding, hexacoordinate, truncated, oxygen storage-T complex; HET: FLC HEM; 1.68A {Synechocystis SP} SCOP: a.1.1.1 PDB: 1s6a_A* 1mwb_A* 1rtx_A* 2hz1_A* 2hz3_A* 2hz2_A*
Probab=29.16 E-value=92 Score=19.77 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q 033999 12 IGMCLTETLDEMVQNGTLTPELAIQVLVQFD 42 (106)
Q Consensus 12 lG~aL~dtLdeli~~~~I~p~la~kIl~~FD 42 (106)
.+..|.+||+|+ | ++|++...++..+.
T Consensus 87 wl~~l~~al~e~---~-~~~~~~~~~~~~~~ 113 (124)
T 1s69_A 87 VAEDLLATLKEM---G-VPEDLIAEVAAVAG 113 (124)
T ss_dssp HHHHHHHHHHHH---T-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc---C-CCHHHHHHHHHHHH
Confidence 455666666665 1 66666666665554
No 24
>2vml_A Phycocyanin alpha chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_A*
Probab=28.52 E-value=73 Score=22.15 Aligned_cols=43 Identities=14% Similarity=0.104 Sum_probs=29.5
Q ss_pred HHHHhh-hHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHH
Q 033999 5 ELYRRS-TIGMCLTETLDEMVQ--NGTLTPELAIQVLVQFDKSMTE 47 (106)
Q Consensus 5 ~lYR~s-tlG~aL~dtLdeli~--~~~I~p~la~kIl~~FDk~i~~ 47 (106)
|+||.- .=+.+...++..|-. ...++++.+..|-.-||..|+.
T Consensus 115 eiy~algvp~~~~~~a~~~mk~~~~~~l~~~~~~~i~~yfd~~i~~ 160 (162)
T 2vml_A 115 EVNRTFNLSPSWYIEALKHIKGKVGSQLSGQPLTEANAYIDYCINA 160 (162)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 567662 222333556666655 5678999999999999998874
No 25
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=28.25 E-value=36 Score=24.55 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=26.2
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 033999 20 LDEMVQNGTLTPELAIQVLVQFDKSMTEALET 51 (106)
Q Consensus 20 Ldeli~~~~I~p~la~kIl~~FDk~i~~~L~~ 51 (106)
.+.+-+..-+++..+..+++.|-..|.++|.+
T Consensus 53 i~~ia~~~~lsk~da~~vl~~l~~~i~~~L~~ 84 (204)
T 2iie_A 53 SEYLFDKLGLSKRDAKELVELFFEEIRRALEN 84 (204)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 33334455689999999999999999999987
No 26
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=27.55 E-value=1e+02 Score=20.46 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 033999 12 IGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTE 47 (106)
Q Consensus 12 lG~aL~dtLdeli~~~~I~p~la~kIl~~FDk~i~~ 47 (106)
--.+|.+|+++|+. ....+.+.|++++.+
T Consensus 74 p~eaL~~al~~L~~-------~~~~l~~~f~~a~~~ 102 (115)
T 1xpp_A 74 PQSAIKRAVRKLSK-------LYEDLGTQFQKEFQR 102 (115)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 34789999999987 667778888887653
No 27
>4a94_C Carboxypeptidase inhibitor; hydrolase-hydrolase inhibitor complex, CPA4, NVCI, PCI, LCI; 1.70A {Nerita versicolor}
Probab=26.67 E-value=20 Score=20.77 Aligned_cols=21 Identities=29% Similarity=0.792 Sum_probs=12.5
Q ss_pred ceEE--eeeCcccee-eCcEEEEE
Q 033999 56 KVSI--KGHLHTYRF-CDNVWTFI 76 (106)
Q Consensus 56 k~~~--KG~L~tYr~-cDnVWtf~ 76 (106)
.++| |+.=..|-+ |..||||-
T Consensus 22 tctfvckaadndfgyecqhvwtfe 45 (53)
T 4a94_C 22 TCTFVCKAADNDFGYECQHVWTFE 45 (53)
T ss_dssp EEEEEEEECSSTTSEEEEEEEEET
T ss_pred eEEEEEeeccCCCCceeeEEEEEC
Confidence 4455 333334444 88999994
No 28
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=26.04 E-value=41 Score=21.21 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=26.8
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHhhcccceEEe
Q 033999 25 QNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIK 60 (106)
Q Consensus 25 ~~~~I~p~la~kIl~~FDk~i~~~L~~~vk~k~~~K 60 (106)
+...+++..+..++..|-.+|.++|.+. .++++.
T Consensus 12 ~~~~lsk~~~~~~l~~~~~~i~~~L~~G--~~V~l~ 45 (99)
T 1exe_A 12 QDTGLTQVSVSKMLASFEKIITETVAKG--DKVQLT 45 (99)
T ss_dssp HHHCSCCTTHHHHHHHHHHHHHHHHHHT--CCCCBT
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHCC--CeEEEC
Confidence 3446899999999999999999999873 344443
No 29
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=25.81 E-value=75 Score=21.14 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=25.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHCCCCCHHHH
Q 033999 6 LYRRSTIGMCLTETLDEMVQNGTLTPELA 34 (106)
Q Consensus 6 lYR~stlG~aL~dtLdeli~~~~I~p~la 34 (106)
-+|..-+|..+...|.++++.+.+.|.+.
T Consensus 12 s~R~~Rv~~~i~~~ls~il~~~~~dp~l~ 40 (129)
T 2e7g_A 12 HARLRALNGLLYKALTDLLCTPEVSQELY 40 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccCcccc
Confidence 46788899999999999999988888875
No 30
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Probab=25.55 E-value=81 Score=21.17 Aligned_cols=51 Identities=16% Similarity=0.326 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhcccceE----E---eeeCcccee
Q 033999 15 CLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVS----I---KGHLHTYRF 68 (106)
Q Consensus 15 aL~dtLdeli~~~~I~p~la~kIl~~FDk~i~~~L~~~vk~k~~----~---KG~L~tYr~ 68 (106)
-|.++|+.+-++.-|+++.....++ .|+..+.+++..+... | +|.+..|+.
T Consensus 4 ell~~l~~l~~EKgI~~e~v~eaie---~AL~~A~kk~~g~~~~~~V~id~~tG~~~v~~~ 61 (129)
T 2kwp_A 4 EILAVVEAVSNEKALPREKIFEALE---SALATATKKKYEQEIDVRVQIDRKSGDFDTFRR 61 (129)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHH---HHHHHHHHHHHCSCCCEEEEEETTTTEEEEEEE
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHH---HHHHHHHHHhcCCccceEEEEECCCCeEEEEEE
Confidence 4789999999999999998776665 5677777775543333 3 388888885
No 31
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=25.13 E-value=87 Score=25.03 Aligned_cols=38 Identities=18% Similarity=0.106 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 033999 14 MCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALET 51 (106)
Q Consensus 14 ~aL~dtLdeli~~~~I~p~la~kIl~~FDk~i~~~L~~ 51 (106)
+.|.+.++++.+.-.++.+.-.+|...|-..|.+-|++
T Consensus 6 ~~~~~~~~~~~~~f~~~~~~l~~i~~~~~~em~~gL~~ 43 (451)
T 1bdg_A 6 QQLFEKVVEILKPFDLSVVDYEEICDRMGESMRLGLQK 43 (451)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 46778999999999999999999999999999999984
No 32
>1kn1_A Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 3dbj_A* 2v8a_A* 1b33_A* 2vjt_A* 1all_A*
Probab=25.11 E-value=97 Score=21.51 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=29.8
Q ss_pred HHHHh-hhHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHH
Q 033999 5 ELYRR-STIGMCLTETLDEMVQ--NGTLTPELAIQVLVQFDKSMTE 47 (106)
Q Consensus 5 ~lYR~-stlG~aL~dtLdeli~--~~~I~p~la~kIl~~FDk~i~~ 47 (106)
|+||. -.=+.+...+|..|-. ...++++.+..|-.-||..++.
T Consensus 113 eiy~algvp~~~~~~~~~~mk~~~~~~l~~~~~~~i~~yfD~~i~~ 158 (160)
T 1kn1_A 113 EMYKSLGTPISAVAEGVKCMKSVASSLLSGEDSAEAGFYFDYVVGA 158 (160)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 56666 2233444555555555 5688999999999999998864
No 33
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A
Probab=25.10 E-value=89 Score=22.35 Aligned_cols=31 Identities=10% Similarity=0.207 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q 033999 10 STIGMCLTETLDEMVQNGTLTPELAIQVLVQ 40 (106)
Q Consensus 10 stlG~aL~dtLdeli~~~~I~p~la~kIl~~ 40 (106)
..|=..|+++|.+++.+.=|++++|..|..-
T Consensus 156 ~~LDe~Lq~~l~~yLeeRGI~~~la~fl~~y 186 (209)
T 1p32_A 156 DSLDWALYDHLMDFLADRGVDNTFADELVEL 186 (209)
T ss_dssp TTCCHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4566899999999999999999999988653
No 34
>3hzs_A Monofunctional glycosyltransferase; transglycosylase, peptidoglycan, moenomycin, membrane, cell shape; HET: M0E; 2.10A {Staphylococcus aureus subsp} SCOP: d.2.1.0
Probab=24.36 E-value=69 Score=23.50 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=18.9
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHH
Q 033999 18 ETLDEMVQNGTLTPELAIQVLVQ 40 (106)
Q Consensus 18 dtLdeli~~~~I~p~la~kIl~~ 40 (106)
..|+.|.+.|.||++.+..-+.+
T Consensus 185 ~VL~~M~~~g~It~~e~~~A~~e 207 (209)
T 3hzs_A 185 TNLEKMKQQNYINETQYQQAMSQ 207 (209)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHh
Confidence 56999999999999988765543
No 35
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=24.06 E-value=18 Score=25.62 Aligned_cols=27 Identities=19% Similarity=0.087 Sum_probs=22.6
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHH
Q 033999 16 LTETLDEMVQNGTLTPELAIQVLVQFD 42 (106)
Q Consensus 16 L~dtLdeli~~~~I~p~la~kIl~~FD 42 (106)
....||.|...|.|+.+-++.|..++.
T Consensus 43 v~~LLD~LL~~gvLs~EE~EiV~~~~T 69 (144)
T 4e9m_A 43 TQCLVDNLLKNDYFSAEDAEIVCACPT 69 (144)
T ss_dssp CHHHHHHHHHTTSSCHHHHHHHHTSSS
T ss_pred hHHHHHHHHHcCCCCHHHHHHHhccCC
Confidence 467899999999999999988876543
No 36
>1jf3_A Monomer hemoglobin component III; oxygen storage/transport complex; HET: HEM; 1.40A {Glycera dibranchiata} SCOP: a.1.1.2 PDB: 1jl7_A* 1jf4_A* 1jl6_A* 1vre_A* 1vrf_A* 1hbg_A* 2hbg_A*
Probab=23.90 E-value=1.5e+02 Score=19.06 Aligned_cols=40 Identities=10% Similarity=0.212 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 033999 11 TIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQ 52 (106)
Q Consensus 11 tlG~aL~dtLdeli~~~~I~p~la~kIl~~FDk~i~~~L~~~ 52 (106)
.+|.+|..+|.+.... ..||+....--.-| ..+..+|...
T Consensus 105 ~~~~~Ll~~l~~~lg~-~~t~e~~~AW~~~~-~~v~~~l~~~ 144 (147)
T 1jf3_A 105 PLGASLLSAMEHRIGG-KMNAAAKDAWAAAY-GDISGALISG 144 (147)
T ss_dssp HHHHHHHHHHHHHHGG-GSCHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-cCCHHHHHHHHHHH-HHHHHHHHhh
Confidence 4889999999988763 57887765433333 3555555543
No 37
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.88 E-value=74 Score=24.43 Aligned_cols=36 Identities=14% Similarity=0.378 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 033999 17 TETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQV 53 (106)
Q Consensus 17 ~dtLdeli~~~~I~p~la~kIl~~FDk~i~~~L~~~v 53 (106)
.+.|+.++.+|+|+|++-+. |+.|=-++...|.+.+
T Consensus 180 l~~LQqViDsG~i~pkqk~a-W~A~GIa~g~ILANEv 215 (269)
T 3hlz_A 180 LEKIQQVIDSGKISPKKKDE-WLAIGITVCAILTNEV 215 (269)
T ss_dssp HHHHHHHHHTTCSCTTCHHH-HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCcChHHHHH-HHHhhHHHHHHHHhhc
Confidence 47899999999999998775 7789999999999987
No 38
>3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 4ff1_A 4ff2_A* 4ff3_A* 4ff4_A* 3q24_A* 3c3l_A 3c46_A 3c2p_A* 2po4_A
Probab=22.76 E-value=75 Score=28.89 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhcccceEEeee-------------Cccce--eeCcEEE
Q 033999 10 STIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQVKSKVSIKGH-------------LHTYR--FCDNVWT 74 (106)
Q Consensus 10 stlG~aL~dtLdeli~~~~I~p~la~kIl~~FDk~i~~~L~~~vk~k~~~KG~-------------L~tYr--~cDnVWt 74 (106)
-|+|.+|+.+=.+|+- .|.=+..-+...||+.+.+.++++.+.+..=||. |..|- |.-++.|
T Consensus 815 ~TvG~~L~~atEql~~---aTniQ~~~~q~~f~~~v~ek~ae~~~~~t~kk~e~Lsqk~~~~I~~eLs~laPi~~s~sQt 891 (1118)
T 3q23_A 815 QTVGESLVYSTEQLQK---ATQIQSVVLEDMFKQRVQEKLAEKAKDPTWKKGDFLTQKELNDIQASLNNLAPMIETGSQT 891 (1118)
T ss_dssp HHHCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCTTCCCBHHHHHHHHHTTGGGCCCEECSSCE
T ss_pred HHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcccccCccccccHHHHHHHHHHHHhcccceecCCce
Confidence 4899999999977854 4555666778899999999999987765555554 22222 4556777
Q ss_pred EEEcCe
Q 033999 75 FILQDA 80 (106)
Q Consensus 75 f~lkn~ 80 (106)
|.+-..
T Consensus 892 ~~lgg~ 897 (1118)
T 3q23_A 892 FYIAGS 897 (1118)
T ss_dssp ECTTEE
T ss_pred EEeccc
Confidence 776443
No 39
>2wfu_B Probable insulin-like peptide 5 B chain; cleavage on PAIR of basic residues, signaling protein; 1.85A {Drosophila melanogaster} PDB: 2wfv_B
Probab=22.63 E-value=55 Score=16.53 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHC
Q 033999 12 IGMCLTETLDEMVQN 26 (106)
Q Consensus 12 lG~aL~dtLdeli~~ 26 (106)
.|..|.|||.-+=.+
T Consensus 6 CG~~L~eaL~~vC~~ 20 (26)
T 2wfu_B 6 CGPALMDMLRVACPN 20 (26)
T ss_dssp CHHHHHHHHHHHCSS
T ss_pred hhHHHHHHHHHHHhc
Confidence 689999999876443
No 40
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=22.55 E-value=80 Score=22.59 Aligned_cols=31 Identities=10% Similarity=0.110 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q 033999 10 STIGMCLTETLDEMVQNGTLTPELAIQVLVQ 40 (106)
Q Consensus 10 stlG~aL~dtLdeli~~~~I~p~la~kIl~~ 40 (106)
..|=..|+++|.+++++.=|++++|..|..-
T Consensus 152 ~~LDe~Lq~~l~~YLeeRGI~~~la~fl~~y 182 (203)
T 1yqf_A 152 HELDYDLLNCVMTYLEKRGVDEKLGEFVVLY 182 (203)
T ss_dssp GGSBHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4678899999999999999999999988653
No 41
>4b4y_A Neuroglobin; transport protein, nervous system evolution, globin evolutio cnidarian, metazoan; HET: HEM; 2.30A {Symsagittifera roscoffensis}
Probab=22.52 E-value=1.7e+02 Score=19.19 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q 033999 11 TIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALE 50 (106)
Q Consensus 11 tlG~aL~dtLdeli~~~~I~p~la~kIl~~FDk~i~~~L~ 50 (106)
.+|.+|..+|.+......-||++... |.++=..+..+|.
T Consensus 115 ~~~~~Ll~~l~~~lg~~~~t~e~~~A-W~~~~~~va~~l~ 153 (154)
T 4b4y_A 115 KLGGCILTQVVKRVSEAKWSEEKKEA-WLKAYGIITVMVT 153 (154)
T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHHHHHHHHHh
Confidence 48999999999988645688887644 3333334555543
No 42
>2bmm_A Thermostable hemoglobin from thermobifida fusca; bacterial hemoglobin, thermostable protein, oxygen storage/transport; HET: HEM; 2.48A {Thermobifida fusca}
Probab=22.49 E-value=1.3e+02 Score=19.03 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q 033999 12 IGMCLTETLDEMVQNGTLTPELAIQVLVQFDK 43 (106)
Q Consensus 12 lG~aL~dtLdeli~~~~I~p~la~kIl~~FDk 43 (106)
....|.+||+|+- ++|+++..++..+..
T Consensus 86 wl~~~~~al~e~~----~~~~~~~~~~~~~~~ 113 (123)
T 2bmm_A 86 WLTHMRAAVDDLA----LPAHLEQQLWEYLVY 113 (123)
T ss_dssp HHHHHHHHHHHHC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHH
Confidence 4566777887741 778888887777763
No 43
>1sfk_A Core protein; alpha helix, viral protein; 3.20A {Kunjin virus} SCOP: a.190.1.1
Probab=22.36 E-value=1.2e+02 Score=18.68 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 033999 28 TLTPELAIQVLVQFDKSMTEAL 49 (106)
Q Consensus 28 ~I~p~la~kIl~~FDk~i~~~L 49 (106)
..+|.++.++|..|-+.+..-|
T Consensus 49 ~v~k~~a~kvL~~~kk~v~~Ll 70 (76)
T 1sfk_A 49 SVNKQTAMKHLLSFKKELGTLT 70 (76)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999888
No 44
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=22.26 E-value=49 Score=20.79 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=19.2
Q ss_pred HHHHHHHCCCCCHHHHHHHHH
Q 033999 19 TLDEMVQNGTLTPELAIQVLV 39 (106)
Q Consensus 19 tLdeli~~~~I~p~la~kIl~ 39 (106)
.||.|++.|.|+++....|..
T Consensus 26 lld~L~~~~VLt~~~~e~I~~ 46 (100)
T 3crd_A 26 VLQYLYQEGILTENHIQEINA 46 (100)
T ss_dssp SHHHHHHHTSSCHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHc
Confidence 589999999999999999876
No 45
>3lrd_A Major ampullate spidroin 1; dragline spider SILK, SELF-assembly, PH-dependence, NT D40N/ double-mutant, structural protein; HET: PGE; 2.15A {Euprosthenops australis} PDB: 3lr6_A* 2lpj_A 3lr2_A 2lpi_A 4fbs_A 3lr8_A*
Probab=22.16 E-value=2e+02 Score=19.86 Aligned_cols=47 Identities=21% Similarity=0.356 Sum_probs=39.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 033999 5 ELYRRSTIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALET 51 (106)
Q Consensus 5 ~lYR~stlG~aL~dtLdeli~~~~I~p~la~kIl~~FDk~i~~~L~~ 51 (106)
|+=+-++||.++.-+.|-|...|++++.-..-+=.-|=-+|.+....
T Consensus 37 q~~Dm~sI~~ti~~a~d~~~~~g~ss~aklqAlnmAfASSiAeia~s 83 (137)
T 3lrd_A 37 QLDNMSTIAQSMVQSIQSLAAQGRTSPNKLQALNMAFASSMAEIAAS 83 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 45567899999999999999999999998888878888888887543
No 46
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=21.66 E-value=1.3e+02 Score=20.09 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 033999 14 MCLTETLDEMVQNGTLTPELAIQVLVQFDKSM 45 (106)
Q Consensus 14 ~aL~dtLdeli~~~~I~p~la~kIl~~FDk~i 45 (106)
..-.+.+.++.....|+++|..+|.+-|+-..
T Consensus 15 ~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~ 46 (212)
T 3ukn_A 15 HTRTKDLKDFIRVHRLPKALAQRMLECFQTTW 46 (212)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44567889999999999999999998887543
No 47
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=21.59 E-value=81 Score=24.05 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=19.8
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHH
Q 033999 17 TETLDEMVQNGTLTPELAIQVLVQ 40 (106)
Q Consensus 17 ~dtLdeli~~~~I~p~la~kIl~~ 40 (106)
...|+.|.+.|.||++.+..-+.+
T Consensus 237 ~~VL~~M~~~g~It~~e~~~A~~e 260 (263)
T 3vmt_A 237 STNLEKMKQQNYINETQYQQAMSQ 260 (263)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHH
Confidence 356999999999999998776554
No 48
>2oif_A Horvu GLB1, non-legume hemoglobin; hexacoordinate hemoglobin, barley, ligand binding, non- symbiotic, symbiotic, evolution; HET: HEM; 1.80A {Hordeum vulgare} PDB: 2r50_A* 1d8u_A* 2gnv_A* 2gnw_A* 3qqq_A* 3qqr_A*
Probab=21.30 E-value=1.7e+02 Score=19.08 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 033999 11 TIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQ 52 (106)
Q Consensus 11 tlG~aL~dtLdeli~~~~I~p~la~kIl~~FDk~i~~~L~~~ 52 (106)
.+|.+|..+|.+.......+|++...--.-|+ .+..+|...
T Consensus 117 ~~~~~Ll~~l~~~lg~~~~t~e~~~AW~~~~~-~i~~~l~~~ 157 (162)
T 2oif_A 117 VTRFALLETIKEALPADMWGPEMRNAWGEAYD-QLVAAIKQE 157 (162)
T ss_dssp HHHHHHHHHHHHHSCGGGCSHHHHHHHHHHHH-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHHHHHH-HHHHHHHHh
Confidence 48999999999987634588887765544444 555555553
No 49
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=21.06 E-value=1.4e+02 Score=17.57 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q 033999 11 TIGMCLTETLDEMVQNGTLTPELAIQVLVQ 40 (106)
Q Consensus 11 tlG~aL~dtLdeli~~~~I~p~la~kIl~~ 40 (106)
++...-.+.|.+++.+...+|++....++.
T Consensus 17 ~ls~~e~~~i~~w~~~~~~~~elI~~A~~~ 46 (78)
T 2zc2_A 17 MLSPFELEDLQKTVSDDKTDPDLVRSALRE 46 (78)
T ss_dssp CCCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 455677788899998888999887766554
No 50
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=20.65 E-value=1.7e+02 Score=18.53 Aligned_cols=39 Identities=8% Similarity=-0.132 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 033999 11 TIGMCLTETLDEMVQNGTLTPELAIQVLVQFDKSMTEALETQ 52 (106)
Q Consensus 11 tlG~aL~dtLdeli~~~~I~p~la~kIl~~FDk~i~~~L~~~ 52 (106)
.+|.+|..||.+ ... .-||++...--+-|+ .+..+|...
T Consensus 93 ~~~~~Ll~~l~~-lg~-~~t~e~~~AW~~~~~-~~a~~l~~~ 131 (134)
T 1tu9_A 93 LWLDALLMAVAE-HDR-DCDAETRDAWRDVMG-RGIAVIKSY 131 (134)
T ss_dssp HHHHHHHHHHHH-HCT-TCCHHHHHHHHHHHH-HHHHHHHHT
T ss_pred HHHHHHHHHHHH-hcc-cCCHHHHHHHHHHHH-HHHHHHHHH
Confidence 489999999999 443 579987765444443 566666553
No 51
>1dgn_A Iceberg (protease inhibitor); antiparallel six-helix bundle, greek-KEY, hydrolase inhibitor; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=20.27 E-value=90 Score=19.46 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=23.9
Q ss_pred HHH-HHHHHHHHHHHCCCCCHHHHHHHHHH
Q 033999 12 IGM-CLTETLDEMVQNGTLTPELAIQVLVQ 40 (106)
Q Consensus 12 lG~-aL~dtLdeli~~~~I~p~la~kIl~~ 40 (106)
+|. .+...||+|.+.++|+.+-...|...
T Consensus 16 ~~~~~i~~lLD~Ll~~~VLn~~E~e~i~~~ 45 (89)
T 1dgn_A 16 VGAGTINALLDCLLEDEVISQEDMNKVRDE 45 (89)
T ss_dssp CCHHHHHHHHHHHHHHTCSCHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHCcccHHHHHHHHhc
Confidence 443 45679999999999999999988775
No 52
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=20.14 E-value=52 Score=20.17 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=10.6
Q ss_pred EeeeCeEEEEEecCCCC
Q 033999 88 QETVGRVKIVACDSKLL 104 (106)
Q Consensus 88 ~~~~~~lKIVAcd~~~~ 104 (106)
++.++. ++|+||+...
T Consensus 8 ~i~v~~-r~v~CdGg~g 23 (67)
T 2jrr_A 8 TKIVDK-SRVACDGGEG 23 (67)
T ss_dssp EEEESS-SEEEEEESST
T ss_pred eEEECC-CEEEeCCCCC
Confidence 344544 7889998754
No 53
>1kn1_B Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 1all_B* 3dbj_B* 2v8a_B* 1b33_B* 2vjt_B*
Probab=20.06 E-value=1.1e+02 Score=21.30 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=26.3
Q ss_pred HHHHh-hhHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHH
Q 033999 5 ELYRR-STIGMCLTETLDEMVQ--NGTLTPELAIQVLVQFDKSMTE 47 (106)
Q Consensus 5 ~lYR~-stlG~aL~dtLdeli~--~~~I~p~la~kIl~~FDk~i~~ 47 (106)
|+||. ..=+.+...+|..|-. ...++++.+..|-.-||..++.
T Consensus 114 eiy~algvp~~~~~~~~~~mk~~~~~~l~~~~~~~i~~yfd~~~~~ 159 (161)
T 1kn1_B 114 ETYNSLGVPIGATIQAIQAMKEVTSGLVGPDAGKEMGLYFDYICSG 159 (161)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 56665 1222333344444443 3456788888999999998875
Done!