Query 034000
Match_columns 106
No_of_seqs 103 out of 1613
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:40:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 3.7E-21 8E-26 113.9 11.7 83 23-105 31-113 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.1E-19 4.5E-24 119.5 11.8 79 26-104 269-347 (352)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.6E-19 5.6E-24 119.1 11.3 81 25-105 2-82 (352)
4 KOG0122 Translation initiation 99.8 3.2E-19 6.9E-24 111.0 10.4 84 22-105 185-268 (270)
5 PF00076 RRM_1: RNA recognitio 99.8 1.1E-18 2.3E-23 91.4 10.4 70 29-99 1-70 (70)
6 TIGR01659 sex-lethal sex-letha 99.8 4.9E-19 1.1E-23 117.6 10.5 85 21-105 102-186 (346)
7 PF14259 RRM_6: RNA recognitio 99.8 2.5E-17 5.4E-22 86.4 10.7 70 29-99 1-70 (70)
8 TIGR01659 sex-lethal sex-letha 99.8 1.6E-17 3.5E-22 110.4 10.9 81 24-104 191-273 (346)
9 TIGR01645 half-pint poly-U bin 99.7 2.3E-17 5E-22 115.5 11.2 80 25-104 203-282 (612)
10 KOG0149 Predicted RNA-binding 99.7 7.9E-18 1.7E-22 104.4 6.9 78 25-103 11-88 (247)
11 TIGR01628 PABP-1234 polyadenyl 99.7 4E-17 8.8E-22 114.5 10.7 79 28-106 2-80 (562)
12 TIGR01645 half-pint poly-U bin 99.7 3.4E-17 7.5E-22 114.6 9.9 80 24-103 105-184 (612)
13 TIGR01648 hnRNP-R-Q heterogene 99.7 8E-17 1.7E-21 112.4 10.7 99 3-103 36-135 (578)
14 KOG0121 Nuclear cap-binding pr 99.7 2.5E-17 5.4E-22 93.8 6.7 81 23-103 33-113 (153)
15 PLN03120 nucleic acid binding 99.7 9.8E-17 2.1E-21 101.8 9.9 75 26-104 4-78 (260)
16 KOG0113 U1 small nuclear ribon 99.7 6.3E-17 1.4E-21 103.3 8.9 80 24-103 99-178 (335)
17 KOG0125 Ataxin 2-binding prote 99.7 4.4E-17 9.4E-22 105.2 8.2 84 19-104 89-172 (376)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.7 1.8E-16 3.8E-21 110.0 11.8 81 24-104 293-373 (509)
19 TIGR01622 SF-CC1 splicing fact 99.7 1.8E-16 3.9E-21 108.7 11.1 79 26-104 186-264 (457)
20 KOG0107 Alternative splicing f 99.7 6.5E-17 1.4E-21 96.5 7.6 76 24-104 8-83 (195)
21 KOG4207 Predicted splicing fac 99.7 6.4E-17 1.4E-21 98.9 6.6 85 21-105 8-92 (256)
22 smart00362 RRM_2 RNA recogniti 99.7 5E-16 1.1E-20 80.8 9.2 72 28-101 1-72 (72)
23 KOG0145 RNA-binding protein EL 99.7 1.9E-16 4.2E-21 99.9 8.7 84 22-105 37-120 (360)
24 TIGR01622 SF-CC1 splicing fact 99.7 5.6E-16 1.2E-20 106.3 11.1 82 22-104 85-166 (457)
25 TIGR01628 PABP-1234 polyadenyl 99.7 6.4E-16 1.4E-20 108.5 10.8 81 24-105 283-363 (562)
26 KOG0114 Predicted RNA-binding 99.7 9.6E-16 2.1E-20 84.5 8.7 81 21-104 13-93 (124)
27 KOG0117 Heterogeneous nuclear 99.7 8.4E-16 1.8E-20 102.7 9.8 93 10-103 68-161 (506)
28 KOG0111 Cyclophilin-type pepti 99.7 8.4E-17 1.8E-21 99.4 4.4 84 23-106 7-90 (298)
29 PLN03213 repressor of silencin 99.7 1E-15 2.2E-20 103.9 9.4 79 23-105 7-87 (759)
30 PLN03121 nucleic acid binding 99.7 2.4E-15 5.2E-20 94.4 10.3 74 25-102 4-77 (243)
31 smart00360 RRM RNA recognition 99.7 1.7E-15 3.7E-20 78.5 8.1 71 31-101 1-71 (71)
32 KOG0148 Apoptosis-promoting RN 99.7 1.8E-15 3.9E-20 95.8 9.5 76 23-104 161-236 (321)
33 KOG0148 Apoptosis-promoting RN 99.7 7.7E-16 1.7E-20 97.4 7.8 80 26-105 62-141 (321)
34 KOG0108 mRNA cleavage and poly 99.6 1.2E-15 2.5E-20 103.5 8.1 79 27-105 19-97 (435)
35 KOG0126 Predicted RNA-binding 99.6 5.9E-17 1.3E-21 97.3 1.2 78 25-102 34-111 (219)
36 cd00590 RRM RRM (RNA recogniti 99.6 1.5E-14 3.3E-19 75.5 10.0 74 28-102 1-74 (74)
37 COG0724 RNA-binding proteins ( 99.6 8E-15 1.7E-19 93.4 9.9 79 26-104 115-193 (306)
38 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 9.9E-15 2.1E-19 101.0 10.9 76 25-105 274-350 (481)
39 TIGR01648 hnRNP-R-Q heterogene 99.6 1.2E-14 2.6E-19 101.7 10.8 73 25-105 232-306 (578)
40 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.3E-14 2.8E-19 100.4 10.3 73 26-104 2-76 (481)
41 KOG0130 RNA-binding protein RB 99.6 3.3E-15 7.1E-20 86.0 6.0 79 25-103 71-149 (170)
42 KOG0127 Nucleolar protein fibr 99.6 8.2E-15 1.8E-19 100.2 8.1 78 26-104 117-194 (678)
43 KOG0131 Splicing factor 3b, su 99.6 5.2E-15 1.1E-19 88.9 5.9 83 22-104 5-87 (203)
44 KOG0117 Heterogeneous nuclear 99.6 1.8E-14 4E-19 96.4 7.5 73 25-105 258-330 (506)
45 KOG0105 Alternative splicing f 99.6 1.4E-14 3.1E-19 87.5 6.3 78 24-104 4-81 (241)
46 KOG0144 RNA-binding protein CU 99.5 2.3E-14 4.9E-19 95.7 7.4 87 19-105 27-116 (510)
47 PF13893 RRM_5: RNA recognitio 99.5 9.8E-14 2.1E-18 69.8 7.9 56 43-103 1-56 (56)
48 KOG0144 RNA-binding protein CU 99.5 9.1E-15 2E-19 97.5 4.9 80 25-105 123-205 (510)
49 KOG0124 Polypyrimidine tract-b 99.5 1.6E-14 3.4E-19 95.1 4.5 77 26-102 113-189 (544)
50 KOG0145 RNA-binding protein EL 99.5 6.2E-13 1.3E-17 84.3 9.9 82 22-103 274-355 (360)
51 KOG0415 Predicted peptidyl pro 99.5 1.4E-13 2.9E-18 90.3 7.0 84 21-104 234-317 (479)
52 smart00361 RRM_1 RNA recogniti 99.5 6.5E-13 1.4E-17 69.7 8.0 61 40-100 2-69 (70)
53 KOG4206 Spliceosomal protein s 99.5 3.5E-13 7.5E-18 83.4 7.5 78 26-106 9-90 (221)
54 KOG0146 RNA-binding protein ET 99.5 1.1E-13 2.3E-18 88.0 5.1 86 20-105 279-364 (371)
55 KOG0127 Nucleolar protein fibr 99.5 8.5E-13 1.8E-17 90.5 9.5 83 21-103 287-375 (678)
56 KOG0147 Transcriptional coacti 99.4 2.1E-13 4.5E-18 93.2 6.3 74 29-102 281-354 (549)
57 KOG0124 Polypyrimidine tract-b 99.4 4.9E-13 1.1E-17 88.2 6.8 77 27-103 211-287 (544)
58 KOG0109 RNA-binding protein LA 99.4 3.3E-13 7.2E-18 86.4 5.6 70 27-104 3-72 (346)
59 KOG0131 Splicing factor 3b, su 99.4 3.4E-13 7.4E-18 81.2 4.7 97 9-105 76-176 (203)
60 KOG0123 Polyadenylate-binding 99.4 2.4E-12 5.2E-17 86.4 8.6 73 29-104 79-151 (369)
61 KOG4212 RNA-binding protein hn 99.4 1.9E-12 4.2E-17 87.0 8.0 76 26-102 44-120 (608)
62 TIGR01642 U2AF_lg U2 snRNP aux 99.4 3.7E-12 8.1E-17 88.6 9.5 74 22-102 171-256 (509)
63 KOG0110 RNA-binding protein (R 99.4 5.2E-13 1.1E-17 93.5 4.8 81 26-106 613-693 (725)
64 KOG0153 Predicted RNA-binding 99.4 4.6E-12 9.9E-17 82.8 8.1 80 20-105 222-302 (377)
65 KOG0123 Polyadenylate-binding 99.3 8.9E-12 1.9E-16 83.7 8.0 73 28-106 3-75 (369)
66 KOG0110 RNA-binding protein (R 99.3 1.1E-11 2.4E-16 87.0 8.0 77 27-104 516-596 (725)
67 KOG0109 RNA-binding protein LA 99.3 4.8E-12 1E-16 81.2 5.6 74 23-104 75-148 (346)
68 KOG4208 Nucleolar RNA-binding 99.3 2.3E-11 4.9E-16 74.6 8.0 82 22-103 45-127 (214)
69 KOG0132 RNA polymerase II C-te 99.3 1.7E-11 3.7E-16 86.9 7.3 73 25-103 420-492 (894)
70 PF04059 RRM_2: RNA recognitio 99.2 2.9E-10 6.2E-15 62.9 9.2 79 26-104 1-85 (97)
71 KOG4661 Hsp27-ERE-TATA-binding 99.2 1.1E-10 2.4E-15 81.0 8.6 82 23-104 402-483 (940)
72 KOG0146 RNA-binding protein ET 99.2 4.4E-11 9.5E-16 76.2 6.1 80 25-105 18-100 (371)
73 KOG0533 RRM motif-containing p 99.2 1.5E-10 3.2E-15 73.5 8.3 82 22-104 79-160 (243)
74 KOG0116 RasGAP SH3 binding pro 99.2 1.3E-10 2.8E-15 78.9 7.4 78 25-103 287-364 (419)
75 KOG4205 RNA-binding protein mu 99.2 4.5E-11 9.9E-16 78.4 4.9 79 25-104 5-83 (311)
76 KOG1457 RNA binding protein (c 99.2 9.8E-10 2.1E-14 68.5 10.1 85 21-105 29-117 (284)
77 KOG1548 Transcription elongati 99.1 3.7E-10 8.1E-15 74.0 8.2 81 23-104 131-219 (382)
78 KOG4211 Splicing factor hnRNP- 99.1 4.8E-10 1E-14 76.3 8.3 80 22-105 6-85 (510)
79 KOG4212 RNA-binding protein hn 99.1 3.7E-10 8E-15 76.2 7.6 80 19-103 529-608 (608)
80 KOG4660 Protein Mei2, essentia 99.1 9.2E-11 2E-15 80.6 4.1 75 20-99 69-143 (549)
81 KOG4205 RNA-binding protein mu 99.0 7.7E-10 1.7E-14 72.7 5.7 79 26-105 97-175 (311)
82 KOG0151 Predicted splicing reg 99.0 3.5E-09 7.7E-14 75.0 7.9 83 23-105 171-256 (877)
83 KOG4209 Splicing factor RNPS1, 98.9 4.5E-09 9.8E-14 66.7 6.3 82 21-103 96-177 (231)
84 KOG0106 Alternative splicing f 98.9 1.9E-09 4.1E-14 67.3 4.1 70 27-104 2-71 (216)
85 KOG4211 Splicing factor hnRNP- 98.8 2E-08 4.4E-13 68.6 7.0 78 25-104 102-180 (510)
86 KOG0226 RNA-binding proteins [ 98.8 5.7E-09 1.2E-13 66.1 4.0 84 21-104 185-268 (290)
87 KOG4454 RNA binding protein (R 98.8 2.9E-09 6.4E-14 66.2 1.7 79 22-102 5-83 (267)
88 KOG0120 Splicing factor U2AF, 98.7 2E-08 4.3E-13 69.4 4.3 87 18-104 281-367 (500)
89 KOG1190 Polypyrimidine tract-b 98.7 1.6E-07 3.5E-12 63.2 8.0 74 26-104 297-371 (492)
90 PF11608 Limkain-b1: Limkain b 98.6 3.7E-07 8E-12 48.9 6.2 67 27-103 3-74 (90)
91 KOG4307 RNA binding protein RB 98.5 1E-06 2.2E-11 62.9 8.0 77 26-102 867-943 (944)
92 KOG0147 Transcriptional coacti 98.5 5.2E-08 1.1E-12 67.3 0.9 85 19-104 172-256 (549)
93 KOG1365 RNA-binding protein Fu 98.4 4.8E-07 1E-11 60.6 4.4 82 22-104 276-360 (508)
94 KOG4206 Spliceosomal protein s 98.4 2.6E-06 5.7E-11 53.3 7.4 78 23-105 143-221 (221)
95 KOG1457 RNA binding protein (c 98.4 4.6E-07 1E-11 56.8 3.8 65 26-94 210-274 (284)
96 PF08777 RRM_3: RNA binding mo 98.4 1.4E-06 3E-11 49.1 5.2 69 27-101 2-75 (105)
97 COG5175 MOT2 Transcriptional r 98.3 4E-06 8.6E-11 55.6 6.5 78 26-103 114-200 (480)
98 KOG1995 Conserved Zn-finger pr 98.3 1E-06 2.3E-11 58.3 3.8 82 23-104 63-152 (351)
99 KOG0106 Alternative splicing f 98.2 1.2E-06 2.7E-11 54.9 3.3 75 23-105 96-170 (216)
100 KOG2314 Translation initiation 98.2 1E-05 2.2E-10 56.8 7.8 79 22-101 54-139 (698)
101 KOG3152 TBP-binding protein, a 98.1 1.4E-06 3E-11 55.5 1.8 73 25-97 73-157 (278)
102 PF05172 Nup35_RRM: Nup53/35/4 98.1 4.3E-05 9.3E-10 42.7 7.2 77 25-103 5-89 (100)
103 KOG1365 RNA-binding protein Fu 98.1 2E-06 4.3E-11 57.8 2.0 73 26-100 161-237 (508)
104 KOG0129 Predicted RNA-binding 98.1 3E-05 6.4E-10 53.8 7.6 67 21-87 365-432 (520)
105 KOG4210 Nuclear localization s 98.0 4.4E-06 9.6E-11 54.8 2.8 80 25-105 183-263 (285)
106 PF14605 Nup35_RRM_2: Nup53/35 98.0 2.7E-05 5.8E-10 38.5 4.9 52 27-85 2-53 (53)
107 KOG1456 Heterogeneous nuclear 98.0 8.3E-05 1.8E-09 50.1 7.9 69 33-106 129-199 (494)
108 KOG1548 Transcription elongati 97.9 7.7E-05 1.7E-09 49.6 7.4 77 23-103 262-349 (382)
109 KOG0120 Splicing factor U2AF, 97.9 5.5E-05 1.2E-09 52.8 7.0 65 41-105 424-491 (500)
110 PF08952 DUF1866: Domain of un 97.9 0.00011 2.4E-09 43.5 7.3 57 41-106 51-107 (146)
111 PF08675 RNA_bind: RNA binding 97.9 0.00014 3.1E-09 39.0 7.0 59 23-90 6-64 (87)
112 KOG0129 Predicted RNA-binding 97.9 9.6E-05 2.1E-09 51.4 7.7 66 22-88 255-326 (520)
113 PF10309 DUF2414: Protein of u 97.8 0.00023 4.9E-09 36.2 6.6 55 26-88 5-62 (62)
114 KOG1190 Polypyrimidine tract-b 97.8 9E-05 2E-09 50.4 6.3 76 25-105 413-490 (492)
115 KOG4849 mRNA cleavage factor I 97.8 3.4E-05 7.4E-10 51.5 3.6 75 23-97 77-153 (498)
116 KOG0112 Large RNA-binding prot 97.7 6.7E-05 1.4E-09 55.2 4.3 77 22-104 451-529 (975)
117 KOG1456 Heterogeneous nuclear 97.5 0.0011 2.5E-08 44.8 8.3 76 25-105 286-362 (494)
118 KOG1855 Predicted RNA-binding 97.5 0.00021 4.7E-09 48.8 4.8 72 20-91 225-309 (484)
119 KOG0105 Alternative splicing f 97.5 0.00083 1.8E-08 41.4 6.9 65 22-93 111-175 (241)
120 KOG0128 RNA-binding protein SA 97.4 8E-05 1.7E-09 54.5 1.3 80 25-105 735-814 (881)
121 KOG4307 RNA binding protein RB 97.3 0.00026 5.7E-09 51.2 3.0 79 23-102 431-510 (944)
122 PF03467 Smg4_UPF3: Smg-4/UPF3 97.2 0.0016 3.4E-08 40.0 5.5 71 23-93 4-80 (176)
123 KOG2193 IGF-II mRNA-binding pr 97.0 0.0011 2.3E-08 45.6 3.9 71 27-103 2-73 (584)
124 KOG2202 U2 snRNP splicing fact 97.0 0.00034 7.4E-09 44.8 1.3 62 41-103 83-145 (260)
125 KOG1996 mRNA splicing factor [ 97.0 0.0057 1.2E-07 40.3 6.6 63 40-102 300-363 (378)
126 PF15023 DUF4523: Protein of u 96.9 0.014 3E-07 34.7 7.3 79 17-103 77-159 (166)
127 KOG0128 RNA-binding protein SA 96.9 3.5E-05 7.6E-10 56.2 -4.1 68 27-94 668-735 (881)
128 KOG2416 Acinus (induces apopto 96.9 0.0015 3.2E-08 46.6 3.7 78 22-105 440-521 (718)
129 KOG0115 RNA-binding protein p5 96.9 0.0018 3.9E-08 41.7 3.7 61 27-88 32-92 (275)
130 KOG4676 Splicing factor, argin 96.7 0.0065 1.4E-07 41.5 5.5 74 26-100 7-83 (479)
131 PF04847 Calcipressin: Calcipr 96.4 0.019 4.1E-07 35.6 5.9 60 39-104 8-69 (184)
132 KOG4660 Protein Mei2, essentia 96.4 0.011 2.5E-07 41.8 5.3 53 51-103 414-470 (549)
133 KOG2135 Proteins containing th 96.2 0.0027 5.9E-08 44.1 1.8 74 25-105 371-445 (526)
134 KOG0112 Large RNA-binding prot 96.2 0.00076 1.6E-08 49.9 -0.9 79 24-103 370-448 (975)
135 PF07576 BRAP2: BRCA1-associat 96.2 0.099 2.1E-06 29.7 9.2 67 27-95 13-81 (110)
136 KOG2068 MOT2 transcription fac 95.8 0.0036 7.9E-08 41.7 0.7 78 25-102 76-159 (327)
137 KOG0804 Cytoplasmic Zn-finger 95.3 0.15 3.4E-06 35.6 7.3 68 26-95 74-142 (493)
138 PF11767 SET_assoc: Histone ly 94.6 0.29 6.2E-06 25.3 6.4 56 37-101 11-66 (66)
139 KOG4285 Mitotic phosphoprotein 94.6 0.22 4.7E-06 33.3 6.2 62 28-97 199-260 (350)
140 PF03880 DbpA: DbpA RNA bindin 94.5 0.33 7.1E-06 25.4 6.7 67 28-103 2-74 (74)
141 KOG4574 RNA-binding protein (c 94.3 0.034 7.3E-07 41.6 2.1 73 26-104 298-372 (1007)
142 KOG2591 c-Mpl binding protein, 94.1 0.14 3.1E-06 36.8 4.8 69 25-100 174-246 (684)
143 KOG4483 Uncharacterized conser 92.6 0.51 1.1E-05 32.8 5.5 58 23-87 388-446 (528)
144 KOG2253 U1 snRNP complex, subu 92.4 0.15 3.2E-06 37.2 2.8 70 22-100 36-105 (668)
145 PF15513 DUF4651: Domain of un 91.3 0.68 1.5E-05 23.5 3.8 22 41-62 9-30 (62)
146 PF07530 PRE_C2HC: Associated 89.9 0.84 1.8E-05 23.6 3.6 61 41-104 2-63 (68)
147 KOG4210 Nuclear localization s 89.0 0.27 5.9E-06 32.6 1.7 74 25-98 87-160 (285)
148 KOG4676 Splicing factor, argin 86.4 0.032 7E-07 38.3 -3.8 66 24-94 149-214 (479)
149 smart00596 PRE_C2HC PRE_C2HC d 86.1 1.5 3.2E-05 22.8 3.0 61 41-104 2-63 (69)
150 KOG4410 5-formyltetrahydrofola 84.8 3.8 8.2E-05 27.5 5.1 47 26-78 330-377 (396)
151 KOG2318 Uncharacterized conser 82.9 9.5 0.00021 28.1 6.7 75 23-97 171-297 (650)
152 PF03468 XS: XS domain; Inter 78.4 10 0.00023 21.7 5.0 45 39-86 30-75 (116)
153 TIGR02542 B_forsyth_147 Bacter 75.0 5.9 0.00013 22.9 3.2 61 19-82 70-133 (145)
154 PF07292 NID: Nmi/IFP 35 domai 74.7 2.5 5.4E-05 23.1 1.6 26 23-48 49-74 (88)
155 KOG2193 IGF-II mRNA-binding pr 69.4 0.098 2.1E-06 36.4 -5.6 74 26-102 80-153 (584)
156 KOG4019 Calcineurin-mediated s 68.2 5.4 0.00012 24.9 2.2 73 26-104 10-88 (193)
157 KOG2295 C2H2 Zn-finger protein 65.7 0.57 1.2E-05 33.8 -2.6 71 25-95 230-300 (648)
158 COG5193 LHP1 La protein, small 65.4 3.3 7.2E-05 28.9 1.0 64 23-86 171-244 (438)
159 KOG2891 Surface glycoprotein [ 65.0 12 0.00027 25.1 3.5 71 22-92 145-246 (445)
160 PF02714 DUF221: Domain of unk 63.6 11 0.00025 25.1 3.3 22 71-92 1-22 (325)
161 KOG4454 RNA binding protein (R 61.0 1.7 3.6E-05 28.0 -1.0 66 26-92 80-149 (267)
162 PF10567 Nab6_mRNP_bdg: RNA-re 60.1 23 0.0005 23.9 4.1 58 25-82 14-78 (309)
163 COG0724 RNA-binding proteins ( 59.6 29 0.00064 21.6 4.6 64 21-84 220-283 (306)
164 KOG1295 Nonsense-mediated deca 57.2 27 0.00059 24.4 4.1 69 25-93 6-77 (376)
165 COG5507 Uncharacterized conser 51.8 30 0.00066 19.4 3.1 24 65-88 63-86 (117)
166 PF03439 Spt5-NGN: Early trans 49.3 39 0.00085 18.0 3.3 26 67-92 43-68 (84)
167 KOG4008 rRNA processing protei 48.0 21 0.00046 23.3 2.4 33 21-53 35-67 (261)
168 KOG4213 RNA-binding protein La 47.6 35 0.00077 21.4 3.2 57 26-86 111-168 (205)
169 PRK11901 hypothetical protein; 45.0 1E+02 0.0022 21.3 6.2 67 21-91 240-307 (327)
170 PHA01632 hypothetical protein 44.8 27 0.00059 17.4 2.0 20 30-49 20-39 (64)
171 PF11411 DNA_ligase_IV: DNA li 43.5 20 0.00042 16.2 1.3 16 36-51 19-34 (36)
172 PRK14548 50S ribosomal protein 42.7 56 0.0012 17.7 5.1 55 30-87 24-80 (84)
173 PF02946 GTF2I: GTF2I-like rep 42.4 41 0.00089 17.9 2.6 31 26-56 34-72 (76)
174 PF15063 TC1: Thyroid cancer p 39.6 18 0.00039 19.2 1.0 28 26-53 25-52 (79)
175 TIGR03636 L23_arch archaeal ri 38.8 63 0.0014 17.1 5.2 56 29-87 16-73 (77)
176 PRK10905 cell division protein 32.4 1.7E+02 0.0037 20.2 6.1 69 18-90 239-308 (328)
177 COG5584 Predicted small secret 32.4 97 0.0021 17.4 3.7 31 33-63 29-59 (103)
178 PF14893 PNMA: PNMA 31.8 39 0.00084 23.2 1.9 26 24-49 16-41 (331)
179 PF15407 Spo7_2_N: Sporulation 28.2 28 0.00061 18.0 0.6 20 23-42 24-43 (67)
180 PF14111 DUF4283: Domain of un 27.8 38 0.00083 19.7 1.2 31 29-59 107-138 (153)
181 PF00054 Laminin_G_1: Laminin 27.4 21 0.00045 20.5 0.0 11 25-35 91-101 (131)
182 COG0030 KsgA Dimethyladenosine 26.9 1.2E+02 0.0026 20.2 3.4 28 26-53 95-122 (259)
183 smart00457 MACPF membrane-atta 26.7 33 0.0007 21.3 0.8 28 31-58 30-59 (194)
184 PF09902 DUF2129: Uncharacteri 26.0 1.1E+02 0.0024 16.0 4.0 38 46-92 16-53 (71)
185 PF07237 DUF1428: Protein of u 25.9 1.4E+02 0.0029 16.9 6.0 48 41-88 23-85 (103)
186 KOG0156 Cytochrome P450 CYP2 s 25.9 1.8E+02 0.0039 21.2 4.4 58 31-98 37-97 (489)
187 PF10281 Ish1: Putative stress 25.2 67 0.0015 14.2 1.5 16 37-52 3-18 (38)
188 PRK02302 hypothetical protein; 25.0 1.3E+02 0.0029 16.5 4.0 38 46-92 22-59 (89)
189 PF12623 Hen1_L: RNA repair, l 24.7 2.1E+02 0.0046 18.8 4.5 63 26-88 118-183 (245)
190 PF03108 DBD_Tnp_Mut: MuDR fam 24.4 83 0.0018 15.6 2.0 15 74-88 9-23 (67)
191 cd00027 BRCT Breast Cancer Sup 24.0 95 0.0021 14.5 2.9 26 27-52 2-27 (72)
192 PRK01178 rps24e 30S ribosomal 23.2 1.5E+02 0.0033 16.6 5.1 46 37-83 30-80 (99)
193 PF13046 DUF3906: Protein of u 22.7 1.3E+02 0.0027 15.5 2.6 32 40-73 32-63 (64)
194 PF00220 Hormone_4: Neurohypop 21.6 43 0.00093 10.2 0.3 6 30-35 2-7 (9)
195 PF05573 NosL: NosL; InterPro 21.0 1.9E+02 0.0042 17.2 3.3 22 67-88 113-134 (149)
196 PF11823 DUF3343: Protein of u 20.7 1.4E+02 0.003 15.2 3.0 24 70-93 3-26 (73)
197 COG3254 Uncharacterized conser 20.3 1.9E+02 0.004 16.5 5.1 42 41-85 27-68 (105)
198 PF13600 DUF4140: N-terminal d 20.1 63 0.0014 17.7 1.1 34 24-59 21-56 (104)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.87 E-value=3.7e-21 Score=113.94 Aligned_cols=83 Identities=55% Similarity=0.896 Sum_probs=78.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
....++|||+|||+++++++|+++|++||.|..+.++.+..+++++|||||+|.+.++|++|+..|++..|+|++|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34577899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccc
Q 034000 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+.+
T Consensus 111 a~~ 113 (144)
T PLN03134 111 AND 113 (144)
T ss_pred CCc
Confidence 753
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.82 E-value=2.1e-19 Score=119.54 Aligned_cols=79 Identities=38% Similarity=0.581 Sum_probs=75.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
..+|||+|||.++++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+..|||..++|+.|+|.|..
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 4579999999999999999999999999999999999899999999999999999999999999999999999999864
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.82 E-value=2.6e-19 Score=119.11 Aligned_cols=81 Identities=36% Similarity=0.629 Sum_probs=76.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
...+|||+|||.++++++|+++|+.||+|..+.+++++.++.++|||||+|.+.++|++|+..|++..+.|++|+|.+++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36789999999999999999999999999999999998889999999999999999999999999999999999999875
Q ss_pred c
Q 034000 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 82 ~ 82 (352)
T TIGR01661 82 P 82 (352)
T ss_pred c
Confidence 4
No 4
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=3.2e-19 Score=111.01 Aligned_cols=84 Identities=30% Similarity=0.492 Sum_probs=80.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.-++..+|.|.||+.++++++|+++|.+||.|..+.+.+++.+|.++|||||.|.+.++|++|+..|+|.-.++--|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34467889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
||+|
T Consensus 265 wskP 268 (270)
T KOG0122|consen 265 WSKP 268 (270)
T ss_pred ecCC
Confidence 9987
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.81 E-value=1.1e-18 Score=91.40 Aligned_cols=70 Identities=43% Similarity=0.792 Sum_probs=66.4
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034000 29 LFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 29 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~ 99 (106)
|||+|||.++++++|+++|+.||.+..+.+..+ .++..+++|||+|.+.++|+.|+..+++..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 4788899999999999999999999999999999885
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.81 E-value=4.9e-19 Score=117.59 Aligned_cols=85 Identities=34% Similarity=0.535 Sum_probs=79.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||++||+++++++|+++|+.||+|..+.++.+..++..+|||||+|.+.++|+.|+..|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34456889999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 98764
No 7
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.77 E-value=2.5e-17 Score=86.44 Aligned_cols=70 Identities=37% Similarity=0.686 Sum_probs=64.4
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034000 29 LFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 29 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~ 99 (106)
|||+|||++++.++|+++|+.+|.|..+.+...+. +..+++|||+|.+.++|..|+..+++..++|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 68999999999999999999999999999999875 88999999999999999999999999999999885
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=1.6e-17 Score=110.42 Aligned_cols=81 Identities=28% Similarity=0.576 Sum_probs=74.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCC--eEEEEE
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG--RNIRVN 101 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~--~~i~v~ 101 (106)
...++|||+|||.++++++|+++|++||.|..+.++.+..+++.++++||+|.+.++|++|++.|++..+.+ ++|+|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 346789999999999999999999999999999999998889999999999999999999999999998865 689998
Q ss_pred ecc
Q 034000 102 YAH 104 (106)
Q Consensus 102 ~~~ 104 (106)
+++
T Consensus 271 ~a~ 273 (346)
T TIGR01659 271 LAE 273 (346)
T ss_pred ECC
Confidence 875
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.75 E-value=2.3e-17 Score=115.47 Aligned_cols=80 Identities=25% Similarity=0.468 Sum_probs=76.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.+.+++.+++.+|||||+|.+.++|..|+..||+..++|+.|+|.++-
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 35789999999999999999999999999999999998888899999999999999999999999999999999999864
No 10
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.74 E-value=7.9e-18 Score=104.35 Aligned_cols=78 Identities=45% Similarity=0.777 Sum_probs=70.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
.-++|||++|+|++..++|+++|++||+|.+..++.|+.+++++||+||.|++.++|++||+. ..-.|+||+..+.+|
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 346899999999999999999999999999999999999999999999999999999999984 456789998766654
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.73 E-value=4e-17 Score=114.46 Aligned_cols=79 Identities=37% Similarity=0.630 Sum_probs=75.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecccC
Q 034000 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHKD 106 (106)
Q Consensus 28 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~~~ 106 (106)
.|||+|||.++++++|+++|+.||.|..+.+.++..+++.+|||||+|.+.++|++|+..+++..+.|+.|+|.|+.+|
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 6999999999999999999999999999999999888999999999999999999999999999999999999998653
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.73 E-value=3.4e-17 Score=114.60 Aligned_cols=80 Identities=30% Similarity=0.634 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||+++++++|+++|+.||.|..+.+..++.+++++|||||+|.+.++|+.|+..+||..++|++|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35679999999999999999999999999999999999889999999999999999999999999999999999999754
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.72 E-value=8e-17 Score=112.43 Aligned_cols=99 Identities=27% Similarity=0.435 Sum_probs=83.8
Q ss_pred ccCCceeeccCccccccccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHH
Q 034000 3 WLNGSVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82 (106)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 82 (106)
.+++...+..++..+. ...+...++|||+|||.++++++|+++|+++|.|..+.++++ .++.++|||||+|.+.++|+
T Consensus 36 ~~~g~r~~g~Pp~~~~-~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~ 113 (578)
T TIGR01648 36 QENGQRKYGGPPPGWS-GVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAK 113 (578)
T ss_pred ccCCcccCCCCCCccc-CCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHH
Confidence 4566666666666543 344566799999999999999999999999999999999999 58999999999999999999
Q ss_pred HHHHHhCCeeeC-CeEEEEEec
Q 034000 83 EAIKEMDGLLLD-GRNIRVNYA 103 (106)
Q Consensus 83 ~al~~l~~~~i~-~~~i~v~~~ 103 (106)
+|+..||+..+. ++.|.|.++
T Consensus 114 ~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 114 EAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred HHHHHcCCCeecCCcccccccc
Confidence 999999999885 677766654
No 14
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=2.5e-17 Score=93.84 Aligned_cols=81 Identities=27% Similarity=0.518 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
...+++|||+||+..+++++|.++|+..|+|..+-+-.++....+.||+||+|.+.++|+.|++.+++..++.+.|++.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34578999999999999999999999999999999988887788889999999999999999999999999999999987
Q ss_pred c
Q 034000 103 A 103 (106)
Q Consensus 103 ~ 103 (106)
-
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 4
No 15
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.72 E-value=9.8e-17 Score=101.83 Aligned_cols=75 Identities=17% Similarity=0.292 Sum_probs=69.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
.++|||+|||+.+++++|+++|+.||.|..+.++.+.. .+|||||+|.+.++++.|+. |+|..+.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 57899999999999999999999999999999988753 45899999999999999996 99999999999999874
No 16
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=6.3e-17 Score=103.34 Aligned_cols=80 Identities=36% Similarity=0.709 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
+.=+||||+.|+.++++.+|++.|+.||+|..|.++++..+++++|||||+|++.-++.+|-+..+|+.|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999874
No 17
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.72 E-value=4.4e-17 Score=105.23 Aligned_cols=84 Identities=27% Similarity=0.560 Sum_probs=76.1
Q ss_pred cccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034000 19 LLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 19 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i 98 (106)
+++.++..++|+|+|||+...+.||+..|.+||+|..+.|+... ..++|||||.|++.++|++|-.+|||..|.||+|
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 34556678999999999999999999999999999999998764 4578999999999999999999999999999999
Q ss_pred EEEecc
Q 034000 99 RVNYAH 104 (106)
Q Consensus 99 ~v~~~~ 104 (106)
+|..+.
T Consensus 167 EVn~AT 172 (376)
T KOG0125|consen 167 EVNNAT 172 (376)
T ss_pred EEeccc
Confidence 998764
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.72 E-value=1.8e-16 Score=109.97 Aligned_cols=81 Identities=25% Similarity=0.475 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||..+++++|+++|+.||.|..+.++.+..++..+|||||+|.+.++|..|+..|+|..++|++|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999998888999999999999999999999999999999999999987
Q ss_pred c
Q 034000 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
.
T Consensus 373 ~ 373 (509)
T TIGR01642 373 C 373 (509)
T ss_pred c
Confidence 4
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.71 E-value=1.8e-16 Score=108.74 Aligned_cols=79 Identities=38% Similarity=0.720 Sum_probs=75.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
.++|||+|||..+++++|+++|+.||.|..+.+..+..++..+|||||+|.+.++|..|+..|+|..+.|+.|.|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 5899999999999999999999999999999999998788899999999999999999999999999999999999964
No 20
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=6.5e-17 Score=96.47 Aligned_cols=76 Identities=30% Similarity=0.522 Sum_probs=70.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+||+..+++.+|+..|..||++..+++...+ .|||||+|++..+|+.|+..|+|..|.|.+|+|+.+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 347899999999999999999999999999999997643 689999999999999999999999999999999987
Q ss_pred c
Q 034000 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
.
T Consensus 83 ~ 83 (195)
T KOG0107|consen 83 T 83 (195)
T ss_pred c
Confidence 5
No 21
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.70 E-value=6.4e-17 Score=98.91 Aligned_cols=85 Identities=38% Similarity=0.611 Sum_probs=79.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
+..+....|.|-||..-++.++|+.+|++||.|-.+.|+++..++..+|||||.|.+..+|+.|+.+|+|.+++|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 34445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+.|+.
T Consensus 88 q~ary 92 (256)
T KOG4207|consen 88 QMARY 92 (256)
T ss_pred hhhhc
Confidence 98764
No 22
>smart00362 RRM_2 RNA recognition motif.
Probab=99.69 E-value=5e-16 Score=80.82 Aligned_cols=72 Identities=43% Similarity=0.724 Sum_probs=66.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 28 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
+|+|+|||..++.++|+++|..||.+..+.+..+. +..++++||+|.+.+.|+.|+..+++..+.|++++|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999888765 6678999999999999999999999999999998873
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=1.9e-16 Score=99.91 Aligned_cols=84 Identities=37% Similarity=0.653 Sum_probs=80.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....+.|.|.-||..+++++++.+|...|+|+.|++++|+-+|...||+||.|.++++|++|+..|||..+..+.|+|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
|++|
T Consensus 117 yARP 120 (360)
T KOG0145|consen 117 YARP 120 (360)
T ss_pred eccC
Confidence 9976
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.69 E-value=5.6e-16 Score=106.34 Aligned_cols=82 Identities=26% Similarity=0.420 Sum_probs=75.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||..+++++|+++|+.+|.|..+.++.+..++..+|||||+|.+.++|++|+. ++|..+.|+.|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 34457899999999999999999999999999999999998889999999999999999999997 89999999999998
Q ss_pred ecc
Q 034000 102 YAH 104 (106)
Q Consensus 102 ~~~ 104 (106)
++.
T Consensus 164 ~~~ 166 (457)
T TIGR01622 164 SSQ 166 (457)
T ss_pred ecc
Confidence 754
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.68 E-value=6.4e-16 Score=108.46 Aligned_cols=81 Identities=33% Similarity=0.620 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
....+|||+||+.++++++|+++|+.||.|..+.++.+. ++..+|+|||+|.+.++|.+|+..+|+..++|++|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~-~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE-KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC-CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 346789999999999999999999999999999999984 7889999999999999999999999999999999999998
Q ss_pred cc
Q 034000 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 362 ~~ 363 (562)
T TIGR01628 362 QR 363 (562)
T ss_pred cC
Confidence 64
No 26
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=9.6e-16 Score=84.49 Aligned_cols=81 Identities=23% Similarity=0.413 Sum_probs=72.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
-++...+-|||+|||++++.++.-++|.+||.|+.+++-..+ ..+|-|||.|++..+|.+|+..|.|..+.++.+.|
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 345567889999999999999999999999999999996544 45789999999999999999999999999999998
Q ss_pred Eecc
Q 034000 101 NYAH 104 (106)
Q Consensus 101 ~~~~ 104 (106)
-+-.
T Consensus 90 lyyq 93 (124)
T KOG0114|consen 90 LYYQ 93 (124)
T ss_pred EecC
Confidence 7644
No 27
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=8.4e-16 Score=102.66 Aligned_cols=93 Identities=27% Similarity=0.444 Sum_probs=80.6
Q ss_pred eccCccccccccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 034000 10 FSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD 89 (106)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~ 89 (106)
+.-++.. +....+...+.|||++||.++.+++|.-+|++.|+|-++++++++.+|.++|||||.|++.+.|+.|++.||
T Consensus 68 ~ggPpP~-weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~ln 146 (506)
T KOG0117|consen 68 YGGPPPG-WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELN 146 (506)
T ss_pred cCCCCCc-ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhh
Confidence 3333443 334455778999999999999999999999999999999999999899999999999999999999999999
Q ss_pred Ceee-CCeEEEEEec
Q 034000 90 GLLL-DGRNIRVNYA 103 (106)
Q Consensus 90 ~~~i-~~~~i~v~~~ 103 (106)
+.+| .|+.|.|..|
T Consensus 147 n~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 147 NYEIRPGKLLGVCVS 161 (506)
T ss_pred CccccCCCEeEEEEe
Confidence 9987 5777777654
No 28
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=8.4e-17 Score=99.36 Aligned_cols=84 Identities=38% Similarity=0.641 Sum_probs=79.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
....++|||++|..++++.-|...|-+||.|..+.++.+..+++++||+||+|...++|.+|+.-||+.++.|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 034000 103 AHKD 106 (106)
Q Consensus 103 ~~~~ 106 (106)
|+|.
T Consensus 87 AkP~ 90 (298)
T KOG0111|consen 87 AKPE 90 (298)
T ss_pred cCCc
Confidence 9873
No 29
>PLN03213 repressor of silencing 3; Provisional
Probab=99.66 E-value=1e-15 Score=103.89 Aligned_cols=79 Identities=19% Similarity=0.437 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCH--HHHHHHHHHhCCeeeCCeEEEE
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASE--AAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~--~~a~~al~~l~~~~i~~~~i~v 100 (106)
.....+|||+||++.+++++|+..|+.||.|..+.+++. +| +|||||+|... .++.+|+..|||..+.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 345688999999999999999999999999999999844 45 89999999976 7899999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
..|++
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 99875
No 30
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.66 E-value=2.4e-15 Score=94.39 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=67.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
...+|+|+||++.+++++|+++|+.+|.|..+.+.++. ...++|||+|.+.++++.|+. |+|..|.+++|.|..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEe
Confidence 46899999999999999999999999999999998874 344799999999999999996 999999999999885
No 31
>smart00360 RRM RNA recognition motif.
Probab=99.65 E-value=1.7e-15 Score=78.48 Aligned_cols=71 Identities=38% Similarity=0.725 Sum_probs=65.8
Q ss_pred EcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 31 IGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 31 v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
|+|||..++.++|+++|+.||.+..+.+..++.++..+++|||+|.+.++|..|+..+++..++|++++|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999998887678889999999999999999999999999999998873
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.8e-15 Score=95.79 Aligned_cols=76 Identities=29% Similarity=0.621 Sum_probs=71.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
...+++||++|++..++++.+++.|++||+|.++++..++ ||+||.|.+.+.|.+|+..+|+.+|.|+.++..|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 3457999999999999999999999999999999999875 7999999999999999999999999999999998
Q ss_pred cc
Q 034000 103 AH 104 (106)
Q Consensus 103 ~~ 104 (106)
.+
T Consensus 235 GK 236 (321)
T KOG0148|consen 235 GK 236 (321)
T ss_pred cc
Confidence 65
No 33
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=7.7e-16 Score=97.41 Aligned_cols=80 Identities=41% Similarity=0.730 Sum_probs=76.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~~ 105 (106)
-..++|+-|..+++.++|++.|.+||+|+++++++|..+++++||+||.|...++|+.|+..|+|..|++|.|+..||.+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999854
No 34
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.64 E-value=1.2e-15 Score=103.48 Aligned_cols=79 Identities=34% Similarity=0.771 Sum_probs=76.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~~ 105 (106)
+.+||+|+|+++++++|..+|+..|.|..++++.|+.+|+.+||+|++|.+.++++.|++.||+.++.|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999753
No 35
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=5.9e-17 Score=97.28 Aligned_cols=78 Identities=32% Similarity=0.654 Sum_probs=74.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
....|||+|||++.|+.+|.-+|++||.|..+.+++++.+|+++||||+.|++..+..-|+.-|||+.|.|+.|+|..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 466899999999999999999999999999999999999999999999999999999999999999999999999985
No 36
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.62 E-value=1.5e-14 Score=75.48 Aligned_cols=74 Identities=35% Similarity=0.717 Sum_probs=67.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 28 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
+|+|+|||..+++++++++|+.+|.+..+.+..++.+ ...+++||+|.+.++|..|+..+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4789999999999999999999999999999877633 6688999999999999999999999999999999874
No 37
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.62 E-value=8e-15 Score=93.39 Aligned_cols=79 Identities=43% Similarity=0.782 Sum_probs=75.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
.++|||+|||.++++++|+++|..||.+..+.+..++.++..+|+|||+|.+.+++..|+..+++..+.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999999999998789999999999999999999999999999999999999853
No 38
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.61 E-value=9.9e-15 Score=100.99 Aligned_cols=76 Identities=22% Similarity=0.352 Sum_probs=70.1
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 25 SRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
..++|||+|||. .+++++|+++|+.||.|..+.++.++ +|+|||+|.+.++|+.|+..||+..+.|++|+|.++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 567999999998 69999999999999999999998763 479999999999999999999999999999999987
Q ss_pred cc
Q 034000 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
+.
T Consensus 349 ~~ 350 (481)
T TIGR01649 349 KQ 350 (481)
T ss_pred cc
Confidence 53
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.61 E-value=1.2e-14 Score=101.70 Aligned_cols=73 Identities=32% Similarity=0.560 Sum_probs=67.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccc--CceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQH--GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
..++|||+|||.++++++|+++|+.| |.|..+.++ ++||||+|.+.++|++|+..||+..|+|+.|+|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 999998764 35999999999999999999999999999999999
Q ss_pred ccc
Q 034000 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+++
T Consensus 304 Akp 306 (578)
T TIGR01648 304 AKP 306 (578)
T ss_pred ccC
Confidence 865
No 40
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.60 E-value=1.3e-14 Score=100.38 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=66.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHh--CCeeeCCeEEEEEec
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM--DGLLLDGRNIRVNYA 103 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l--~~~~i~~~~i~v~~~ 103 (106)
+++|||+|||.++++++|+++|++||.|..+.++.+ +++|||+|.+.++|++|+..+ ++..+.|+.|+|.|+
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 578999999999999999999999999999988754 369999999999999999864 778999999999998
Q ss_pred c
Q 034000 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
.
T Consensus 76 ~ 76 (481)
T TIGR01649 76 T 76 (481)
T ss_pred C
Confidence 5
No 41
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=3.3e-15 Score=86.03 Aligned_cols=79 Identities=29% Similarity=0.531 Sum_probs=75.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
..-.|+|.++-..+++++|.+.|..||+|.++-+..+..+|..+||++|+|.+...|++|+..+||..+.|..|.|.|+
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 3567899999999999999999999999999999999989999999999999999999999999999999999999986
No 42
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=8.2e-15 Score=100.18 Aligned_cols=78 Identities=27% Similarity=0.570 Sum_probs=72.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
.-+|.|+|||+.+..++|+.+|+.||.+..+.|++.. .++..|||||+|....+|..|+..+|+..|+|++|-|.||-
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 5689999999999999999999999999999999766 66666999999999999999999999999999999999973
No 43
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.58 E-value=5.2e-15 Score=88.90 Aligned_cols=83 Identities=37% Similarity=0.597 Sum_probs=78.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
+.+...+|||+||+..++++-|.++|-+.|+|..+.++++.-++.+.||||++|.++++|+=|++-|+...++|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 44568899999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred ecc
Q 034000 102 YAH 104 (106)
Q Consensus 102 ~~~ 104 (106)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 875
No 44
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.8e-14 Score=96.39 Aligned_cols=73 Identities=37% Similarity=0.517 Sum_probs=68.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
....|||+||+.++|++.|++.|+.||.|..+..++| ||||+|.+.++|-+|++.+|+.+|+|..|.|.+|+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 3578999999999999999999999999999977644 99999999999999999999999999999999998
Q ss_pred c
Q 034000 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
|
T Consensus 330 P 330 (506)
T KOG0117|consen 330 P 330 (506)
T ss_pred C
Confidence 6
No 45
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.4e-14 Score=87.46 Aligned_cols=78 Identities=27% Similarity=0.476 Sum_probs=69.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||.++.+.+|+++|.+||.|..+.+... .....||||+|++..+|+.|+..-+|..++|.+|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35688999999999999999999999999999988433 224579999999999999999988999999999999986
Q ss_pred c
Q 034000 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
.
T Consensus 81 r 81 (241)
T KOG0105|consen 81 R 81 (241)
T ss_pred c
Confidence 4
No 46
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=2.3e-14 Score=95.68 Aligned_cols=87 Identities=33% Similarity=0.551 Sum_probs=76.8
Q ss_pred cccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCee-eCC--
Q 034000 19 LLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL-LDG-- 95 (106)
Q Consensus 19 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~-i~~-- 95 (106)
...++.+.-++||+-+|+.++|.+|+++|++||.|.+|.+++|+.++..+|+|||.|.+.++|.+|+.+||... +.|
T Consensus 27 ~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~ 106 (510)
T KOG0144|consen 27 TDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMH 106 (510)
T ss_pred CCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCC
Confidence 34444566789999999999999999999999999999999999999999999999999999999999998875 444
Q ss_pred eEEEEEeccc
Q 034000 96 RNIRVNYAHK 105 (106)
Q Consensus 96 ~~i~v~~~~~ 105 (106)
+.|+|+++..
T Consensus 107 ~pvqvk~Ad~ 116 (510)
T KOG0144|consen 107 HPVQVKYADG 116 (510)
T ss_pred cceeecccch
Confidence 6888888764
No 47
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.54 E-value=9.8e-14 Score=69.80 Aligned_cols=56 Identities=38% Similarity=0.746 Sum_probs=50.2
Q ss_pred HHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 43 LKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 43 l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
|.++|++||+|..+.+.... ++++||+|.+.++|+.|++.||+..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 57899999999999886543 479999999999999999999999999999999986
No 48
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=9.1e-15 Score=97.54 Aligned_cols=80 Identities=34% Similarity=0.604 Sum_probs=73.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCee-eCC--eEEEEE
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL-LDG--RNIRVN 101 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~-i~~--~~i~v~ 101 (106)
..++|||+.|++.+++.+++++|++||.|.+|+++++. .+.++|++||.|...+-|..|++.||+.. +.| .+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 47899999999999999999999999999999999998 78899999999999999999999999986 555 589999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
||+.
T Consensus 202 FADt 205 (510)
T KOG0144|consen 202 FADT 205 (510)
T ss_pred eccc
Confidence 9854
No 49
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=1.6e-14 Score=95.14 Aligned_cols=77 Identities=31% Similarity=0.667 Sum_probs=74.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
-+++||+.+.++..++.|+..|.+||+|..+..-.++.+++++||+||+|+-.+.|+-|++.|||..++|+.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999864
No 50
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=6.2e-13 Score=84.27 Aligned_cols=82 Identities=32% Similarity=0.535 Sum_probs=76.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.+...-.+||=||..++.+.-|+++|.+||.|..+++++|..+.+++||+||.+.+.++|..|+..|||..++++.++|.
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999998
Q ss_pred ec
Q 034000 102 YA 103 (106)
Q Consensus 102 ~~ 103 (106)
+-
T Consensus 354 FK 355 (360)
T KOG0145|consen 354 FK 355 (360)
T ss_pred Ee
Confidence 63
No 51
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.4e-13 Score=90.32 Aligned_cols=84 Identities=31% Similarity=0.526 Sum_probs=78.6
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
........|||..|.+-++.++|.-+|+.||+|..|.++++..+|....||||+|.+.+++++|.-+|++..|++++|+|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 34455778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eecc
Q 034000 101 NYAH 104 (106)
Q Consensus 101 ~~~~ 104 (106)
.+|.
T Consensus 314 DFSQ 317 (479)
T KOG0415|consen 314 DFSQ 317 (479)
T ss_pred ehhh
Confidence 9864
No 52
>smart00361 RRM_1 RNA recognition motif.
Probab=99.47 E-value=6.5e-13 Score=69.72 Aligned_cols=61 Identities=25% Similarity=0.539 Sum_probs=53.7
Q ss_pred HHHHHHHhc----ccCceeEEE-EeecCCC--CCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 40 ETVLKDAFG----QHGEIIEVK-VICDRVT--GQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 40 ~~~l~~~f~----~~g~i~~~~-~~~~~~~--~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
+++|+++|+ .||.+..+. +..++.+ +..+|++||.|.+.++|++|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 467888888 999999885 6666545 778999999999999999999999999999999976
No 53
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.47 E-value=3.5e-13 Score=83.44 Aligned_cols=78 Identities=31% Similarity=0.572 Sum_probs=70.8
Q ss_pred CceEEEcCCCCCCCHHHHHH----HhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 26 RTKLFIGGLSYDTNETVLKD----AFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~----~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
..||||.||+..+..+++++ +|++||.|..+.... +.+.+|-|||.|.+.+.|-.|++.|+|+.+.|+.++++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 33999999999999999888 999999999987753 56788999999999999999999999999999999999
Q ss_pred ecccC
Q 034000 102 YAHKD 106 (106)
Q Consensus 102 ~~~~~ 106 (106)
||+.|
T Consensus 86 yA~s~ 90 (221)
T KOG4206|consen 86 YAKSD 90 (221)
T ss_pred cccCc
Confidence 98754
No 54
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.1e-13 Score=87.97 Aligned_cols=86 Identities=30% Similarity=0.490 Sum_probs=79.7
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034000 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~ 99 (106)
.-+..+.+.|||=.||.+....+|.+.|-+||.|...++..|+.+..+++|+||.|++..++++|+..|||+.|+.++++
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 44556789999999999999999999999999999999999998998999999999999999999999999999999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+..++
T Consensus 359 VQLKRP 364 (371)
T KOG0146|consen 359 VQLKRP 364 (371)
T ss_pred hhhcCc
Confidence 987554
No 55
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=8.5e-13 Score=90.52 Aligned_cols=83 Identities=37% Similarity=0.653 Sum_probs=74.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHh-----CC-eeeC
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM-----DG-LLLD 94 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l-----~~-~~i~ 94 (106)
.......+|||+|||+++++++|...|++||.+....++.++.++.+.|.|||.|.+...++.||... .| ..++
T Consensus 287 en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~ 366 (678)
T KOG0127|consen 287 ENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD 366 (678)
T ss_pred ccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence 33445699999999999999999999999999999999999999999999999999999999999855 23 5689
Q ss_pred CeEEEEEec
Q 034000 95 GRNIRVNYA 103 (106)
Q Consensus 95 ~~~i~v~~~ 103 (106)
|+.|.|..+
T Consensus 367 GR~Lkv~~A 375 (678)
T KOG0127|consen 367 GRLLKVTLA 375 (678)
T ss_pred ccEEeeeec
Confidence 999998865
No 56
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.45 E-value=2.1e-13 Score=93.15 Aligned_cols=74 Identities=34% Similarity=0.719 Sum_probs=71.7
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 29 LFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 29 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
|||+||-+++++.+++.+|++||.|..+.+.++..+|.++||+||+|.+.++|.+|+..|||+++-|+.|+|..
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 89999999999999999999999999999999988999999999999999999999999999999999999875
No 57
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=4.9e-13 Score=88.21 Aligned_cols=77 Identities=26% Similarity=0.509 Sum_probs=73.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
.++||..+-.+.+++||+..|+.||+|..|.+.+++..+.++||+||+|.+..+...|+..||-+.++|..++|..+
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 78999999999999999999999999999999999988889999999999999999999999999999999998753
No 58
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.43 E-value=3.3e-13 Score=86.40 Aligned_cols=70 Identities=37% Similarity=0.678 Sum_probs=65.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
.+|||+|||..+++.+|+.+|++||+|.+|.|+. .|+||..++...++.|++-|++..++|..|.|+.|+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEecc
Confidence 4699999999999999999999999999999974 499999999999999999999999999999999875
No 59
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.41 E-value=3.4e-13 Score=81.16 Aligned_cols=97 Identities=33% Similarity=0.599 Sum_probs=82.3
Q ss_pred eeccCccccccc---cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeE-EEEeecCCCCCeeeEEEEEeCCHHHHHHH
Q 034000 9 RFSHSVRFTRLL---SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICDRVTGQSRGYGFVKFASEAAAGEA 84 (106)
Q Consensus 9 ~~~~~~~~~~~~---~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 84 (106)
.+..+.++...+ ........+||+||.+++.+.-|.+.|+.||.+.. ..+++++.+|..++++||.|.+.+.+.+|
T Consensus 76 LYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~a 155 (203)
T KOG0131|consen 76 LYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAA 155 (203)
T ss_pred hcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHH
Confidence 344444444433 44555688999999999999999999999998644 58889988899999999999999999999
Q ss_pred HHHhCCeeeCCeEEEEEeccc
Q 034000 85 IKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 85 l~~l~~~~i~~~~i~v~~~~~ 105 (106)
+.++++..+.++++.|+++.+
T Consensus 156 i~s~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 156 IGSMNGQYLCNRPITVSYAFK 176 (203)
T ss_pred HHHhccchhcCCceEEEEEEe
Confidence 999999999999999999864
No 60
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=2.4e-12 Score=86.44 Aligned_cols=73 Identities=40% Similarity=0.728 Sum_probs=68.4
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 29 LFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 29 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
+||.||+.+++..+|.++|+.||.|..|.+..+. +| .+|| ||+|.+.+.|++|+..+||..+.+++|.|....
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 9999999999999999999999999999999987 45 7889 999999999999999999999999999997643
No 61
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.40 E-value=1.9e-12 Score=86.98 Aligned_cols=76 Identities=26% Similarity=0.483 Sum_probs=71.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhc-ccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFG-QHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
.+.+||.|||+++...+|++++. +.|.|.++.++.+. +++.+|++.|+|++++.+++|++.||.+.+.|+.|.|+.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 45599999999999999999996 68999999999997 899999999999999999999999999999999999974
No 62
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.39 E-value=3.7e-12 Score=88.57 Aligned_cols=74 Identities=16% Similarity=0.402 Sum_probs=60.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccc------------CceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQH------------GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD 89 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~------------g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~ 89 (106)
.....++|||+|||..+++++|+++|+.+ +.|..+.+. ..+|||||+|.+.++|+.||. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhhc-CC
Confidence 34457899999999999999999999875 233434332 345899999999999999995 99
Q ss_pred CeeeCCeEEEEEe
Q 034000 90 GLLLDGRNIRVNY 102 (106)
Q Consensus 90 ~~~i~~~~i~v~~ 102 (106)
|+.+.|..|+|..
T Consensus 244 g~~~~g~~l~v~r 256 (509)
T TIGR01642 244 SIIYSNVFLKIRR 256 (509)
T ss_pred CeEeeCceeEecC
Confidence 9999999999864
No 63
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=5.2e-13 Score=93.48 Aligned_cols=81 Identities=23% Similarity=0.494 Sum_probs=74.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~~ 105 (106)
...|+|+|+|+..+..+++++|..||.+..++++.....+.++|||||.|-++.+|.+|+..|....++|+++.++|++-
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 46899999999999999999999999999999988754566799999999999999999999999999999999999976
Q ss_pred C
Q 034000 106 D 106 (106)
Q Consensus 106 ~ 106 (106)
|
T Consensus 693 d 693 (725)
T KOG0110|consen 693 D 693 (725)
T ss_pred c
Confidence 5
No 64
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=4.6e-12 Score=82.77 Aligned_cols=80 Identities=28% Similarity=0.549 Sum_probs=69.4
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHH-HhCCeeeCCeEE
Q 034000 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIK-EMDGLLLDGRNI 98 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~-~l~~~~i~~~~i 98 (106)
.+++....+|||++|-..+++.+|++.|.+||.|+.+.+.... ++|||+|.+.+.|+.|.. .++...|+|.+|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 3445567899999999999999999999999999999987764 589999999999999885 456667999999
Q ss_pred EEEeccc
Q 034000 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
.|.|+.+
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999864
No 65
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=8.9e-12 Score=83.72 Aligned_cols=73 Identities=34% Similarity=0.634 Sum_probs=69.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecccC
Q 034000 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHKD 106 (106)
Q Consensus 28 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~~~ 106 (106)
.|||+ +++++..|.+.|+++|++..+++-++. + +.|||||.|.+..+|++|+..+|...+.|++|++.|+.+|
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 58888 899999999999999999999999998 5 8899999999999999999999999999999999999876
No 66
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=1.1e-11 Score=87.01 Aligned_cols=77 Identities=32% Similarity=0.654 Sum_probs=69.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCC----eeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ----SRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~----~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
++|||.||+++++.+++...|...|.|..+.|...+ +++ +.|||||+|.+.++|++|++.|+|..++|+.|.|++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 449999999999999999999999999999887665 332 459999999999999999999999999999999998
Q ss_pred cc
Q 034000 103 AH 104 (106)
Q Consensus 103 ~~ 104 (106)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 75
No 67
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.31 E-value=4.8e-12 Score=81.17 Aligned_cols=74 Identities=30% Similarity=0.546 Sum_probs=68.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
.....+++|+|+.+.++..+++..|.+||++.++.++.+ |+||.|.-.+++..|++.|++.++.|++++|+.
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 345778999999999999999999999999999999754 899999999999999999999999999999998
Q ss_pred cc
Q 034000 103 AH 104 (106)
Q Consensus 103 ~~ 104 (106)
|.
T Consensus 147 st 148 (346)
T KOG0109|consen 147 ST 148 (346)
T ss_pred ec
Confidence 74
No 68
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.30 E-value=2.3e-11 Score=74.62 Aligned_cols=82 Identities=24% Similarity=0.395 Sum_probs=73.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccc-CceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQH-GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......-+|+..+|....+.++..+|.++ |.+...++.+.+.+|.++|||||+|++.+.|.-|...||+..+.++.|.+
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 33455678899999999999999999988 67888899899889999999999999999999999999999999998888
Q ss_pred Eec
Q 034000 101 NYA 103 (106)
Q Consensus 101 ~~~ 103 (106)
.+-
T Consensus 125 ~vm 127 (214)
T KOG4208|consen 125 HVM 127 (214)
T ss_pred EEe
Confidence 754
No 69
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.27 E-value=1.7e-11 Score=86.91 Aligned_cols=73 Identities=25% Similarity=0.535 Sum_probs=68.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
..+||||++|+..+++.+|...|+.||.|..+.+... +++|||.+....+|++|+++|....+.++.|++.|+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 3689999999999999999999999999999977543 479999999999999999999999999999999997
No 70
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.23 E-value=2.9e-10 Score=62.92 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=68.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcc--cCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeC----CeEEE
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQ--HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD----GRNIR 99 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~----~~~i~ 99 (106)
.+||.|+|||...+.+.|.+++.. .|..-.+.++.|..++...|||||.|.+.+.+....+.++|..+. .+.+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 368999999999999999999864 367788899999889999999999999999999999999999874 45677
Q ss_pred EEecc
Q 034000 100 VNYAH 104 (106)
Q Consensus 100 v~~~~ 104 (106)
|.||+
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 77764
No 71
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.21 E-value=1.1e-10 Score=81.03 Aligned_cols=82 Identities=32% Similarity=0.505 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
....+.|||++|...+...+|+.+|++||+|....++....+...++|+||.+.+..+|.+||..|+..++.|+.|.|+.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 33468899999999999999999999999999999888877788899999999999999999999999999999999998
Q ss_pred cc
Q 034000 103 AH 104 (106)
Q Consensus 103 ~~ 104 (106)
++
T Consensus 482 aK 483 (940)
T KOG4661|consen 482 AK 483 (940)
T ss_pred cc
Confidence 75
No 72
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=4.4e-11 Score=76.24 Aligned_cols=80 Identities=33% Similarity=0.528 Sum_probs=71.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCee-eC--CeEEEEE
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL-LD--GRNIRVN 101 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~-i~--~~~i~v~ 101 (106)
+.++|||+.|.+.-.++|++++|..||.|.++.+++.. ++..+|++||.|.+..+|++|+..|||-. +. +.-+.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 67899999999999999999999999999999999987 88899999999999999999999999875 33 3567777
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
+++-
T Consensus 97 ~ADT 100 (371)
T KOG0146|consen 97 FADT 100 (371)
T ss_pred eccc
Confidence 7653
No 73
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.20 E-value=1.5e-10 Score=73.54 Aligned_cols=82 Identities=32% Similarity=0.528 Sum_probs=74.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.+....+|+|.|||..+..++|+++|..||.+..+.+.+++ +|...|.|-|.|...++|.+|++.++++.++|+.+++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 44556889999999999999999999999988888888887 78888999999999999999999999999999999888
Q ss_pred ecc
Q 034000 102 YAH 104 (106)
Q Consensus 102 ~~~ 104 (106)
...
T Consensus 158 ~i~ 160 (243)
T KOG0533|consen 158 IIS 160 (243)
T ss_pred Eec
Confidence 643
No 74
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.18 E-value=1.3e-10 Score=78.89 Aligned_cols=78 Identities=28% Similarity=0.451 Sum_probs=67.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
...+|||.|||.+++..+|+++|..||.|....|......++..+||||+|.+...++.++.+ +...++++++.|+.-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 345699999999999999999999999999998877653444448999999999999999996 588899999999864
No 75
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.17 E-value=4.5e-11 Score=78.39 Aligned_cols=79 Identities=41% Similarity=0.689 Sum_probs=71.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
..++++|++|+++++++.|+++|.+||.+..+.+++++.++..+||+||+|.+.+...+++. ...+.|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 67899999999999999999999999999999999999999999999999999999888887 35667888888877654
No 76
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.16 E-value=9.8e-10 Score=68.51 Aligned_cols=85 Identities=18% Similarity=0.304 Sum_probs=67.4
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeC---Ce
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDR-VTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD---GR 96 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~---~~ 96 (106)
..+...+||||++||.++...+|..+|..|..-..+.+.... ..+.++-++|+.|.+.++|++|+..|||+.++ +.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 344568999999999999999999999988554444443332 23345679999999999999999999999986 56
Q ss_pred EEEEEeccc
Q 034000 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~i~v~~~~~ 105 (106)
.+++++++.
T Consensus 109 tLhiElAKS 117 (284)
T KOG1457|consen 109 TLHIELAKS 117 (284)
T ss_pred eeEeeehhc
Confidence 788888764
No 77
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.14 E-value=3.7e-10 Score=73.99 Aligned_cols=81 Identities=25% Similarity=0.418 Sum_probs=72.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeE--------EEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeC
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--------VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~ 94 (106)
+.....|||+|||.++|.+++.++|+++|-|.. |.+.++. .|+.+|-|++.|...+++.-|+..|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 445677999999999999999999999997632 6677776 6999999999999999999999999999999
Q ss_pred CeEEEEEecc
Q 034000 95 GRNIRVNYAH 104 (106)
Q Consensus 95 ~~~i~v~~~~ 104 (106)
|+.|+|+.|+
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999999775
No 78
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.13 E-value=4.8e-10 Score=76.27 Aligned_cols=80 Identities=25% Similarity=0.386 Sum_probs=68.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
+......|.+++|||++|+++|++||+..+ |..+.+.+. +++..|.|||+|.+.+++++|++ .+...++.+.|.|.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 445567788999999999999999999875 777666554 68899999999999999999998 48888999999998
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
-+.+
T Consensus 82 ~~~~ 85 (510)
T KOG4211|consen 82 TAGG 85 (510)
T ss_pred ccCC
Confidence 7643
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.12 E-value=3.7e-10 Score=76.24 Aligned_cols=80 Identities=33% Similarity=0.555 Sum_probs=69.5
Q ss_pred cccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034000 19 LLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 19 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i 98 (106)
........++|+|+|||.+.|...|++-|..+|.+.+..++ .+++.+| .|.|.+.++|+.|+..+++..++|+.|
T Consensus 529 a~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I 603 (608)
T KOG4212|consen 529 AVGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNI 603 (608)
T ss_pred cccccccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCcee
Confidence 33445567889999999999999999999999999998883 2566654 899999999999999999999999999
Q ss_pred EEEec
Q 034000 99 RVNYA 103 (106)
Q Consensus 99 ~v~~~ 103 (106)
.|.|.
T Consensus 604 ~V~y~ 608 (608)
T KOG4212|consen 604 KVTYF 608 (608)
T ss_pred eeeeC
Confidence 99873
No 80
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=9.2e-11 Score=80.60 Aligned_cols=75 Identities=27% Similarity=0.390 Sum_probs=65.8
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034000 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~ 99 (106)
.+..-.+.+|+|-|||..++.++|+++|+.||+|+.++- +...++..||+|.|..+|++|++.|++.++.|++++
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 333556899999999999999999999999999999654 444578999999999999999999999999988776
No 81
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.02 E-value=7.7e-10 Score=72.69 Aligned_cols=79 Identities=34% Similarity=0.595 Sum_probs=72.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~~ 105 (106)
..+++|++||.++++.+++++|.+||.|..+.++.+..+...++|+||.|.+.+++.+++. ..-+.+.++.+.|..|-|
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 4589999999999999999999999999999999999899999999999999999999997 467779999999987754
No 82
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.97 E-value=3.5e-09 Score=74.98 Aligned_cols=83 Identities=28% Similarity=0.569 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCC---CCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRV---TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~ 99 (106)
....+.+||+||+..++++.|...|..||++..+.++.... ....+.++||-|.+..++++|+..|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 44578899999999999999999999999999988866542 233567899999999999999999999999999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
+.|+++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999853
No 83
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.92 E-value=4.5e-09 Score=66.70 Aligned_cols=82 Identities=26% Similarity=0.440 Sum_probs=75.3
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......+.+||+|+...++.+++...|+.+|.+..+.+..+...+.++|++||+|.+.+.++.++. |++..+.+..+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 445567889999999999999999999999999999999998888899999999999999999999 9999999999998
Q ss_pred Eec
Q 034000 101 NYA 103 (106)
Q Consensus 101 ~~~ 103 (106)
.+-
T Consensus 175 t~~ 177 (231)
T KOG4209|consen 175 TLK 177 (231)
T ss_pred eee
Confidence 864
No 84
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=1.9e-09 Score=67.33 Aligned_cols=70 Identities=30% Similarity=0.578 Sum_probs=63.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
..+||++||..+.+.++.++|..||++..+.+. .||+||+|.+..+|..|+..+++..+.+-++.|+++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 368999999999999999999999999988763 3588999999999999999999999999889888876
No 85
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.82 E-value=2e-08 Score=68.56 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=64.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeE-EEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
....|.+++||+.+++++|.+||+..--+.. +.++.+. .++..|.|||+|.+.+.++.|+.. |...|+.+.|.|..|
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 4678999999999999999999997643333 4455555 566889999999999999999985 777889999998866
Q ss_pred c
Q 034000 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 86
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.81 E-value=5.7e-09 Score=66.13 Aligned_cols=84 Identities=33% Similarity=0.556 Sum_probs=75.3
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
+-+....+||.+-|-.+++.+-+-+.|.+|-.-..-.+++++.+++.+||+||.|.+..++..|++.++|..++++.|++
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 34456789999999999999999999999987777788899989999999999999999999999999999999999988
Q ss_pred Eecc
Q 034000 101 NYAH 104 (106)
Q Consensus 101 ~~~~ 104 (106)
..+.
T Consensus 265 RkS~ 268 (290)
T KOG0226|consen 265 RKSE 268 (290)
T ss_pred hhhh
Confidence 7653
No 87
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=2.9e-09 Score=66.19 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=70.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....+||||.|+-..++++-|.++|-..|+|..+.|..+. +++.+ |+||.|.++.+.+-|++-+||..+.+..+++.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 34467899999999999999999999999999999887776 67777 99999999999999999999999999888776
Q ss_pred e
Q 034000 102 Y 102 (106)
Q Consensus 102 ~ 102 (106)
.
T Consensus 83 ~ 83 (267)
T KOG4454|consen 83 L 83 (267)
T ss_pred c
Confidence 4
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.70 E-value=2e-08 Score=69.44 Aligned_cols=87 Identities=24% Similarity=0.493 Sum_probs=79.0
Q ss_pred ccccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeE
Q 034000 18 RLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 18 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~ 97 (106)
...........++|++||...++.++++++..||++....++.+..++-.+||+|.+|.+......|+..|||+.+++.+
T Consensus 281 ~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~ 360 (500)
T KOG0120|consen 281 ASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKK 360 (500)
T ss_pred cccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCce
Confidence 34455566789999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred EEEEecc
Q 034000 98 IRVNYAH 104 (106)
Q Consensus 98 i~v~~~~ 104 (106)
+.|+.|-
T Consensus 361 lvvq~A~ 367 (500)
T KOG0120|consen 361 LVVQRAI 367 (500)
T ss_pred eEeehhh
Confidence 9998764
No 89
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.69 E-value=1.6e-07 Score=63.17 Aligned_cols=74 Identities=22% Similarity=0.441 Sum_probs=67.0
Q ss_pred CceEEEcCCCCC-CCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 26 RTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 26 ~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
...|-|+||..+ +|.+.|--+|+.||.|-++.++..+. ..|+|+|.+...|+-|+..|+|..+.|++|+|.+|+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 577888888765 89999999999999999999988763 469999999999999999999999999999999885
No 90
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.59 E-value=3.7e-07 Score=48.91 Aligned_cols=67 Identities=22% Similarity=0.446 Sum_probs=46.3
Q ss_pred ceEEEcCCCCCCCHHH----HHHHhcccC-ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 27 TKLFIGGLSYDTNETV----LKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
..|+|.|||.+..... |++++..+| +|..+. .+.|++.|.+.+.|.+|.+.|+|-.+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999988655 555565665 566551 1479999999999999999999999999999999
Q ss_pred ec
Q 034000 102 YA 103 (106)
Q Consensus 102 ~~ 103 (106)
+.
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 86
No 91
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.49 E-value=1e-06 Score=62.93 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=66.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
.+.|-+.|+|++++.+||.+||..|-.+..--.++....|+.+|.+.|-|++.++|.+|...+++..|.++.|.+.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 44778899999999999999999997654433344445899999999999999999999999999999999999875
No 92
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.45 E-value=5.2e-08 Score=67.29 Aligned_cols=85 Identities=25% Similarity=0.399 Sum_probs=75.3
Q ss_pred cccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034000 19 LLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 19 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i 98 (106)
...++...+++++--++...+..+|.+||+.+|+|..+.++.+..++..+|.+||+|.+.+....|+. |.|..+.|.+|
T Consensus 172 l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv 250 (549)
T KOG0147|consen 172 LSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPV 250 (549)
T ss_pred CCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCcee
Confidence 34445567888888888888999999999999999999999999999999999999999999999995 89999999999
Q ss_pred EEEecc
Q 034000 99 RVNYAH 104 (106)
Q Consensus 99 ~v~~~~ 104 (106)
.|..+.
T Consensus 251 ~vq~sE 256 (549)
T KOG0147|consen 251 IVQLSE 256 (549)
T ss_pred EecccH
Confidence 988653
No 93
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.40 E-value=4.8e-07 Score=60.65 Aligned_cols=82 Identities=21% Similarity=0.338 Sum_probs=66.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccC-ceeE--EEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHG-EIIE--VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~--~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i 98 (106)
.......|.+++||++.+.++|.+||..|. .|.. +-++... .|...|.|||+|.+.+++.+|.++.++....++.|
T Consensus 276 ~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYi 354 (508)
T KOG1365|consen 276 PTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYI 354 (508)
T ss_pred CCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceE
Confidence 344467799999999999999999999886 3544 4444443 67788999999999999999999988888889999
Q ss_pred EEEecc
Q 034000 99 RVNYAH 104 (106)
Q Consensus 99 ~v~~~~ 104 (106)
.|..++
T Consensus 355 Evfp~S 360 (508)
T KOG1365|consen 355 EVFPCS 360 (508)
T ss_pred EEeecc
Confidence 987654
No 94
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.40 E-value=2.6e-06 Score=53.27 Aligned_cols=78 Identities=26% Similarity=0.492 Sum_probs=67.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeC-CeEEEEE
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD-GRNIRVN 101 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~-~~~i~v~ 101 (106)
......+++.+||.+++.+.+..+|.+|..-..++++... .+.+||+|.+...+..|.+.+++..|. .+.+++.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 3456789999999999999999999999888888886653 468999999999999999999999987 8889988
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 218 ~a~K 221 (221)
T KOG4206|consen 218 FAKK 221 (221)
T ss_pred ccCC
Confidence 8763
No 95
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.38 E-value=4.6e-07 Score=56.82 Aligned_cols=65 Identities=23% Similarity=0.319 Sum_probs=54.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeC
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~ 94 (106)
-.+|||.||..++++++|+.+|+.|.....+++... + +...+|++|++.+.|..|+..|+|..+.
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--CcceEeecHHHHHHHHHHHHHhhcceec
Confidence 468999999999999999999999977666666322 2 3458999999999999999999998764
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.37 E-value=1.4e-06 Score=49.09 Aligned_cols=69 Identities=28% Similarity=0.466 Sum_probs=42.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCC-----eeeCCeEEEEE
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG-----LLLDGRNIRVN 101 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~-----~~i~~~~i~v~ 101 (106)
..|.+.+++..++.++|++.|+.||.|..+.+.... ..|+|.|.+.+.|+.|+..+.. ..+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 357888999999999999999999999999886543 3799999999999999986533 34556555554
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.28 E-value=4e-06 Score=55.60 Aligned_cols=78 Identities=23% Similarity=0.468 Sum_probs=60.8
Q ss_pred CceEEEcCCCCCCCHHH------HHHHhcccCceeEEEEeecCCC-CCeeeE--EEEEeCCHHHHHHHHHHhCCeeeCCe
Q 034000 26 RTKLFIGGLSYDTNETV------LKDAFGQHGEIIEVKVICDRVT-GQSRGY--GFVKFASEAAAGEAIKEMDGLLLDGR 96 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~------l~~~f~~~g~i~~~~~~~~~~~-~~~~g~--~fv~f~~~~~a~~al~~l~~~~i~~~ 96 (106)
..-+||-+||..+..++ -.++|.+||+|..+.+-+...+ ....++ .||.|...++|..|+...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45689999998876554 3578999999999987554311 111222 49999999999999999999999999
Q ss_pred EEEEEec
Q 034000 97 NIRVNYA 103 (106)
Q Consensus 97 ~i~v~~~ 103 (106)
-|+..|.
T Consensus 194 ~lkatYG 200 (480)
T COG5175 194 VLKATYG 200 (480)
T ss_pred eEeeecC
Confidence 9998774
No 98
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.27 E-value=1e-06 Score=58.30 Aligned_cols=82 Identities=28% Similarity=0.364 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCcee--------EEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeC
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEII--------EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~ 94 (106)
.....++||-++|..++++.+.++|.++|.|. .+.+..++.+++.++-|.|.|.+...|++|+.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45677899999999999999999999998763 2556777788999999999999999999999999999999
Q ss_pred CeEEEEEecc
Q 034000 95 GRNIRVNYAH 104 (106)
Q Consensus 95 ~~~i~v~~~~ 104 (106)
++.|+|..+.
T Consensus 143 gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 GNTIKVSLAE 152 (351)
T ss_pred CCCchhhhhh
Confidence 9999988764
No 99
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.23 E-value=1.2e-06 Score=54.89 Aligned_cols=75 Identities=31% Similarity=0.526 Sum_probs=64.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
....+.+.|.+++..+...+|.+.|.++|.+..... ..+++||+|...+++..|+..+++..+.++.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 456788899999999999999999999998844433 245899999999999999999999999999999865
Q ss_pred ccc
Q 034000 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+.+
T Consensus 168 ~~~ 170 (216)
T KOG0106|consen 168 NSR 170 (216)
T ss_pred cCc
Confidence 543
No 100
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=1e-05 Score=56.76 Aligned_cols=79 Identities=27% Similarity=0.424 Sum_probs=63.7
Q ss_pred CCCCCceEEEcCCCCCCCH------HHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeC-
Q 034000 22 DANSRTKLFIGGLSYDTNE------TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD- 94 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~------~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~- 94 (106)
.+.....+.|.|+|.--.. .-|.++|+++|++....++.+..+| ++||.|++|.+..+|+.|++.+||..++
T Consensus 54 ~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 54 AEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred cCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 3355678889999975432 4467789999999999998887544 8999999999999999999999999876
Q ss_pred CeEEEEE
Q 034000 95 GRNIRVN 101 (106)
Q Consensus 95 ~~~i~v~ 101 (106)
+++..|.
T Consensus 133 nHtf~v~ 139 (698)
T KOG2314|consen 133 NHTFFVR 139 (698)
T ss_pred cceEEee
Confidence 4555554
No 101
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.11 E-value=1.4e-06 Score=55.48 Aligned_cols=73 Identities=16% Similarity=0.277 Sum_probs=61.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCC--------CC----eeeEEEEEeCCHHHHHHHHHHhCCee
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVT--------GQ----SRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--------~~----~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
..-.||+++||+.+...-|+++|+.||.|-.+.+.....+ +. ....|.|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3467999999999999999999999999999988665533 11 22357899999999999999999999
Q ss_pred eCCeE
Q 034000 93 LDGRN 97 (106)
Q Consensus 93 i~~~~ 97 (106)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99874
No 102
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.09 E-value=4.3e-05 Score=42.65 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=51.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEE-EeecC------CCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCe-
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVK-VICDR------VTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR- 96 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~-~~~~~------~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~- 96 (106)
..+.|.|-+.|.. ....+.+.|++||.|.+.. ..... ......++-.|.|.+..+|++||+ -||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3456888899998 4577889999999987664 11100 012234589999999999999999 499999886
Q ss_pred EEEEEec
Q 034000 97 NIRVNYA 103 (106)
Q Consensus 97 ~i~v~~~ 103 (106)
-+-|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4446665
No 103
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.08 E-value=2e-06 Score=57.78 Aligned_cols=73 Identities=25% Similarity=0.371 Sum_probs=55.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccc----CceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQH----GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~----g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
.-.+.+++||+++++.++..||.+- |....+-++..+ +++..|-||+.|...++|+.|+.+ |...++-+.|.+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 4456778999999999999999743 234556555555 788999999999999999999985 555555554443
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=3e-05 Score=53.80 Aligned_cols=67 Identities=24% Similarity=0.327 Sum_probs=60.6
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhc-ccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFG-QHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 87 (106)
..-+..+||||++||.-++..+|..++. -||.|..+.|--|++-+.++|-|-|.|.+..+-.+||.+
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3455689999999999999999999998 699999999998877788999999999999999999973
No 105
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.02 E-value=4.4e-06 Score=54.78 Aligned_cols=80 Identities=25% Similarity=0.521 Sum_probs=70.9
Q ss_pred CCceEE-EcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 25 SRTKLF-IGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~-v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
...+++ |.+++..++.++|+..|..+|.|..+.+..+..++...|++++.|........++.. ....++++.+.+...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 445566 999999999999999999999999999999988999999999999999999999886 777899998888876
Q ss_pred cc
Q 034000 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 262 ~~ 263 (285)
T KOG4210|consen 262 EP 263 (285)
T ss_pred CC
Confidence 54
No 106
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.01 E-value=2.7e-05 Score=38.52 Aligned_cols=52 Identities=27% Similarity=0.443 Sum_probs=41.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHH
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAI 85 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al 85 (106)
+.|-|.|.|.+..+ .+.++|..+|.|....+.. ...+.++.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 46778899987764 4566888999999988852 2348999999999999885
No 107
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.96 E-value=8.3e-05 Score=50.11 Aligned_cols=69 Identities=19% Similarity=0.345 Sum_probs=58.2
Q ss_pred CCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCe--EEEEEecccC
Q 034000 33 GLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR--NIRVNYAHKD 106 (106)
Q Consensus 33 ~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~--~i~v~~~~~~ 106 (106)
|--.-++.+-|..++...|+|..+.+++. ++. -|.|+|++.+.|++|...|||..|+.. .|+|++|+|+
T Consensus 129 Np~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 129 NPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred cCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 44455788999999999999999988765 443 499999999999999999999998775 6888888875
No 108
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.94 E-value=7.7e-05 Score=49.63 Aligned_cols=77 Identities=22% Similarity=0.359 Sum_probs=60.7
Q ss_pred CCCCceEEEcCCCC----CCC-------HHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCe
Q 034000 23 ANSRTKLFIGGLSY----DTN-------ETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL 91 (106)
Q Consensus 23 ~~~~~~l~v~~lp~----~~~-------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~ 91 (106)
....++|.+.|+-. ..+ .++|.+-+.+||.+..+.+.-. .+-|.+-|.|.+.+.|..|++.|+|-
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCe
Confidence 34567888887732 222 3566777889999999977533 24578999999999999999999999
Q ss_pred eeCCeEEEEEec
Q 034000 92 LLDGRNIRVNYA 103 (106)
Q Consensus 92 ~i~~~~i~v~~~ 103 (106)
.++|++|..++.
T Consensus 338 ~fdgRql~A~i~ 349 (382)
T KOG1548|consen 338 WFDGRQLTASIW 349 (382)
T ss_pred eecceEEEEEEe
Confidence 999999998864
No 109
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.93 E-value=5.5e-05 Score=52.84 Aligned_cols=65 Identities=18% Similarity=0.307 Sum_probs=53.9
Q ss_pred HHHHHHhcccCceeEEEEeecCCC---CCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 034000 41 TVLKDAFGQHGEIIEVKVICDRVT---GQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 41 ~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~~ 105 (106)
++++.-+++||.|..|.+.+...+ .-+.|-.||+|.+.+++++|+..|+|-.+.|+.|...|-..
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 556667889999999999877222 22457799999999999999999999999999999888654
No 110
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.93 E-value=0.00011 Score=43.52 Aligned_cols=57 Identities=28% Similarity=0.524 Sum_probs=45.3
Q ss_pred HHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecccC
Q 034000 41 TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHKD 106 (106)
Q Consensus 41 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~~~ 106 (106)
.++.+.|..||.+.-+++..+ .-+|.|.+.+.|.+|+. ++|..+.|+.|+|+.-.+|
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 478888999998887777544 37899999999999998 7999999999999987664
No 111
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.93 E-value=0.00014 Score=39.01 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=43.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG 90 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~ 90 (106)
+...+..+|+ +|.++...||.++|++||.|.-. ++.+. .|||...+.+.+..++..+..
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~Vs-Wi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVS-WINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEEEE-EECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEEEE-EEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 4445667776 99999999999999999987644 44443 699999999999999887754
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=9.6e-05 Score=51.36 Aligned_cols=66 Identities=27% Similarity=0.531 Sum_probs=49.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCC-CC--Ceee---EEEEEeCCHHHHHHHHHHh
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRV-TG--QSRG---YGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~-~~--~~~g---~~fv~f~~~~~a~~al~~l 88 (106)
.+...++|||++||++++++.|...|..||.+. +.+..... .+ -.+| |+|+.|+++.+++..+.++
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 445578999999999999999999999999754 33432111 11 1345 9999999999998888754
No 113
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.84 E-value=0.00023 Score=36.23 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=45.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccc---CceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQH---GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~---g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
..+|+|+|+ .+++.++++.+|..| .....+.|+.+. .+-|.|.+...|.+||..|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 457999998 457779999999988 246788888875 5889999999999999754
No 114
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.82 E-value=9e-05 Score=50.37 Aligned_cols=76 Identities=18% Similarity=0.335 Sum_probs=61.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCc-eeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCe-EEEEEe
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR-NIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~-~i~v~~ 102 (106)
...++.++|+|.++++++++..|..-|. +...... ++.+.++++++.+.++|.-|+..++.+.+++. .++|++
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~vkafkff-----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF-----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceEEeeeec-----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 3468999999999999999999987764 4544442 33445999999999999999998998888665 899998
Q ss_pred ccc
Q 034000 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
|+.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 864
No 115
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.77 E-value=3.4e-05 Score=51.52 Aligned_cols=75 Identities=23% Similarity=0.447 Sum_probs=64.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccC--ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeE
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~ 97 (106)
+.....+||+||-|.+|.++|.+.+...| .+..++++..+.+|..+||+++...+.......+..|....|.|..
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 33456799999999999999999987766 5778888888889999999999999999999999999888888753
No 116
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.68 E-value=6.7e-05 Score=55.17 Aligned_cols=77 Identities=29% Similarity=0.449 Sum_probs=66.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCC--eEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG--RNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~--~~i~ 99 (106)
.....+.+++++++..+....+.+.|..||.|..|.+-.. ..|++|+|.+...+++|+..+.+..+++ +++.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 3445678999999999999999999999999999877443 3599999999999999999999999876 6788
Q ss_pred EEecc
Q 034000 100 VNYAH 104 (106)
Q Consensus 100 v~~~~ 104 (106)
|.++.
T Consensus 525 vdla~ 529 (975)
T KOG0112|consen 525 VDLAS 529 (975)
T ss_pred ccccc
Confidence 87765
No 117
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.55 E-value=0.0011 Score=44.83 Aligned_cols=76 Identities=20% Similarity=0.290 Sum_probs=66.1
Q ss_pred CCceEEEcCCCCC-CCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 25 SRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
..+.++|-+|... ++.+.+-.+|=.||.|..+.+++.+ .|-|.|++-+....++|+..||+..+-|.+|.|..|
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 4677888999876 5667788888899999999998775 367999999999999999999999999999999888
Q ss_pred cc
Q 034000 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
+.
T Consensus 361 kQ 362 (494)
T KOG1456|consen 361 KQ 362 (494)
T ss_pred cc
Confidence 65
No 118
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.53 E-value=0.00021 Score=48.80 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=57.1
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeec---CCCCC----------eeeEEEEEeCCHHHHHHHHH
Q 034000 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICD---RVTGQ----------SRGYGFVKFASEAAAGEAIK 86 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~~----------~~g~~fv~f~~~~~a~~al~ 86 (106)
..+.-..++|-+.|||.+-.-+.|.++|+.+|.|..++|... +.+.. .+-+|+|+|...+.|.+|..
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 344456789999999999888999999999999999998665 22211 13479999999999999998
Q ss_pred HhCCe
Q 034000 87 EMDGL 91 (106)
Q Consensus 87 ~l~~~ 91 (106)
.++..
T Consensus 305 ~~~~e 309 (484)
T KOG1855|consen 305 LLNPE 309 (484)
T ss_pred hhchh
Confidence 76543
No 119
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.53 E-value=0.00083 Score=41.44 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=57.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeee
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i 93 (106)
.......+.|++||.+.+..+|++....-|.+.+..+.++- .+.|+|-..++++-|++.|+...+
T Consensus 111 srrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-------~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 111 SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-------VGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred ccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-------ceeeeeeehhhHHHHHHhhccccc
Confidence 33457789999999999999999999999999999887763 899999999999999998877654
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.36 E-value=8e-05 Score=54.45 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=67.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
....++|+|.|+..|.+.++.+++++|.+..+.++..+ .|+++|.+++.|.+..++..+....+...+..+.+.|..++
T Consensus 735 gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 735 GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccC
Confidence 36778999999999999999999999999998877666 78999999999999999999987777766666666666544
Q ss_pred c
Q 034000 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 814 p 814 (881)
T KOG0128|consen 814 P 814 (881)
T ss_pred C
Confidence 3
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.27 E-value=0.00026 Score=51.16 Aligned_cols=79 Identities=19% Similarity=0.120 Sum_probs=65.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeE-EEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
-.....|||..||..+++.++.++|...-.|.. |.+.+.+ +++.++.|||.|...+.+..|...-+.+.++.+.|+|.
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 345678999999999999999999988666655 7777766 67778899999999888888887667777888889987
Q ss_pred e
Q 034000 102 Y 102 (106)
Q Consensus 102 ~ 102 (106)
-
T Consensus 510 s 510 (944)
T KOG4307|consen 510 S 510 (944)
T ss_pred c
Confidence 4
No 122
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=97.19 E-value=0.0016 Score=40.03 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=45.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcc-cCce---eEEEEeecC--CCCCeeeEEEEEeCCHHHHHHHHHHhCCeee
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQ-HGEI---IEVKVICDR--VTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~-~g~i---~~~~~~~~~--~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i 93 (106)
.....+|-|++||++++++++.+.+++ ++.- ....-.... ......+-|||.|.+.+++......++|..+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 345668999999999999999987776 5544 233211221 1122345699999999999999999999875
No 123
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.02 E-value=0.0011 Score=45.65 Aligned_cols=71 Identities=28% Similarity=0.457 Sum_probs=54.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCee-eCCeEEEEEec
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL-LDGRNIRVNYA 103 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~-i~~~~i~v~~~ 103 (106)
..+|++||....+..++..+|...--...=.++. ..||+|+.+.+...+.+|++.+++.. +.|.++.+..+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 3689999999999999999997541111111111 24799999999999999999998885 88999888765
No 124
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.98 E-value=0.00034 Score=44.83 Aligned_cols=62 Identities=27% Similarity=0.415 Sum_probs=48.1
Q ss_pred HHHHHHhc-ccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 41 TVLKDAFG-QHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 41 ~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
+++...++ +||.|.++.+- +.......|-++|.|...++|++|+..||+-.+.|++|..+++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc-~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVC-DNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhh-cccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 33444444 78999888543 2223445788999999999999999999999999999988764
No 125
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.95 E-value=0.0057 Score=40.34 Aligned_cols=63 Identities=19% Similarity=0.264 Sum_probs=50.4
Q ss_pred HHHHHHHhcccCceeEEEEeecCCCCCee-eEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 40 ETVLKDAFGQHGEIIEVKVICDRVTGQSR-GYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 40 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~-g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
++++..-+++||+|..+-+...+...... ---||+|...+++.+|+-.|||-.++|+.+..-+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 36677888999999998887765333222 2379999999999999999999999999887654
No 126
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.89 E-value=0.014 Score=34.69 Aligned_cols=79 Identities=14% Similarity=0.171 Sum_probs=56.5
Q ss_pred cccccCCCCCceEEEcCCCCCCC-HHHH---HHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCee
Q 034000 17 TRLLSDANSRTKLFIGGLSYDTN-ETVL---KDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 17 ~~~~~~~~~~~~l~v~~lp~~~~-~~~l---~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
+.....+..-.+|.|+=|..++. .+|+ .+.++.||+|..+.. .++..|.|.|.+..+|=+|+.+++. .
T Consensus 77 wkk~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-------cGrqsavVvF~d~~SAC~Av~Af~s-~ 148 (166)
T PF15023_consen 77 WKKNTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-------CGRQSAVVVFKDITSACKAVSAFQS-R 148 (166)
T ss_pred hcccCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-------cCCceEEEEehhhHHHHHHHHhhcC-C
Confidence 33344455667888888877764 3444 445678999988854 2345799999999999999998765 5
Q ss_pred eCCeEEEEEec
Q 034000 93 LDGRNIRVNYA 103 (106)
Q Consensus 93 i~~~~i~v~~~ 103 (106)
..|..++..|-
T Consensus 149 ~pgtm~qCsWq 159 (166)
T PF15023_consen 149 APGTMFQCSWQ 159 (166)
T ss_pred CCCceEEeecc
Confidence 66777777664
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.89 E-value=3.5e-05 Score=56.22 Aligned_cols=68 Identities=26% Similarity=0.435 Sum_probs=57.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeC
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~ 94 (106)
.++|++||+..+.+.++...|..+|.+..+++......+..+|.++++|...+++.+|+....+..++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 56789999999999999999999998888877756667888999999999999999999865544444
No 128
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.87 E-value=0.0015 Score=46.62 Aligned_cols=78 Identities=14% Similarity=0.247 Sum_probs=61.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcc-cCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeee---CCeE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQ-HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL---DGRN 97 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i---~~~~ 97 (106)
.....+.|||.||-.-.|.-+|+.++.. .|-|... |+.. -+.+|||.|.+.++|.+...+|||..+ +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk-----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK-----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHH-----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3445788999999999999999999985 4556666 4322 246899999999999999999999986 4567
Q ss_pred EEEEeccc
Q 034000 98 IRVNYAHK 105 (106)
Q Consensus 98 i~v~~~~~ 105 (106)
|.+.|...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 88887654
No 129
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.86 E-value=0.0018 Score=41.69 Aligned_cols=61 Identities=25% Similarity=0.408 Sum_probs=53.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
..|||.||+..+..+.+.+-|+.||+|....+..+. .++..+-++|.|.....+.+|+..+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHh
Confidence 579999999999999999999999999776665554 5778889999999999999999876
No 130
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.68 E-value=0.0065 Score=41.50 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=57.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCC---CCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRV---TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
...|.|.||.+.++.++++-+|...|+|..+.+..... -....-.|||-|.+...+..|-. |..+.+-+..|.|
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 34789999999999999999999999999998866332 23345689999999999988876 5555554444444
No 131
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.38 E-value=0.019 Score=35.59 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=44.8
Q ss_pred CHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhC--CeeeCCeEEEEEecc
Q 034000 39 NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD--GLLLDGRNIRVNYAH 104 (106)
Q Consensus 39 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~--~~~i~~~~i~v~~~~ 104 (106)
....|+++|..++.+..+.++... +=..|.|.+.+.|..+...++ +..+.|..+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 347899999999988888776654 247899999999999999999 889999999998764
No 132
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.36 E-value=0.011 Score=41.79 Aligned_cols=53 Identities=21% Similarity=0.252 Sum_probs=41.7
Q ss_pred CceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeee---CC-eEEEEEec
Q 034000 51 GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL---DG-RNIRVNYA 103 (106)
Q Consensus 51 g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i---~~-~~i~v~~~ 103 (106)
|.=-+++++.|..+.+..|||||.|.+.+.+..+.+++||+.+ .+ +...+.||
T Consensus 414 gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYA 470 (549)
T KOG4660|consen 414 GTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYA 470 (549)
T ss_pred CccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehh
Confidence 4445677888887888999999999999999999999999974 33 34555554
No 133
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.25 E-value=0.0027 Score=44.11 Aligned_cols=74 Identities=26% Similarity=0.353 Sum_probs=59.7
Q ss_pred CCceEEEcCCCCCC-CHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 25 SRTKLFIGGLSYDT-NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
..+.|-+...|+.. +.++|...|.+||.|..|.+-+.. -.|.|.|.+.-+|-.|-. .++..|.++.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 34556677777775 568899999999999999886542 379999999999866665 5899999999999997
Q ss_pred cc
Q 034000 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
++
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 65
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.23 E-value=0.00076 Score=49.93 Aligned_cols=79 Identities=23% Similarity=0.395 Sum_probs=63.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
....+|+++|++..+++.+|+..|..+|.+..+.+-... -+...-++|+.|.+...+..|+..+.+..|....+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 357899999999999999999999999999999885543 3334568999999998888888888888776655555443
No 135
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.18 E-value=0.099 Score=29.74 Aligned_cols=67 Identities=21% Similarity=0.240 Sum_probs=47.6
Q ss_pred ceEEE-cCCCCCCCHHHHHHHhcccC-ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCC
Q 034000 27 TKLFI-GGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG 95 (106)
Q Consensus 27 ~~l~v-~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~ 95 (106)
..+.+ ...|..++.+.|..+.+.+- .|..++++++.. ..+-.+++.|.+...|...-..+||..+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444 44444555566665656554 588899988752 245579999999999999999999998644
No 136
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.76 E-value=0.0036 Score=41.67 Aligned_cols=78 Identities=22% Similarity=0.434 Sum_probs=57.7
Q ss_pred CCceEEEcCCCCCCCHHHHH---HHhcccCceeEEEEeecCC---CCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034000 25 SRTKLFIGGLSYDTNETVLK---DAFGQHGEIIEVKVICDRV---TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~---~~f~~~g~i~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i 98 (106)
....+||-+|+.....+.+. .+|.+||.|..+....+.. .......++|.|...++|..|+...+|+..+|+.+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34667888999876554443 4588899999888776551 11233459999999999999999999999888775
Q ss_pred EEEe
Q 034000 99 RVNY 102 (106)
Q Consensus 99 ~v~~ 102 (106)
+..+
T Consensus 156 ka~~ 159 (327)
T KOG2068|consen 156 KASL 159 (327)
T ss_pred HHhh
Confidence 5443
No 137
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.34 E-value=0.15 Score=35.62 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=57.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccC-ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCC
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG 95 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~ 95 (106)
...|.|=.+|..++-.|+..|...+- .|..++++++. .+ .+=..+|.|.+..+|...-..+||..+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~-~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG-MP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC-CC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67888999999999999999998764 68999999964 22 23368999999999999999999997643
No 138
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.64 E-value=0.29 Score=25.25 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=42.8
Q ss_pred CCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 37 DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 37 ~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.++-++++.-+..|+- ..+ ..++ + .-||.|.+..+|+++....++..+.+.++.++
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d~-t-----GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M~ 66 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDDR-T-----GFYIVFNDSKEAERCFRAEDGTLFFTYRMQME 66 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--EecC-C-----EEEEEECChHHHHHHHHhcCCCEEEEEEEEeC
Confidence 3567899999999862 222 2332 2 36899999999999999999999888887653
No 139
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.64 E-value=0.22 Score=33.25 Aligned_cols=62 Identities=16% Similarity=0.365 Sum_probs=45.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeE
Q 034000 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 28 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~ 97 (106)
=|.|-++|..-. .-+...|+++|.|...... . + -.+-+|.|....+|++||.+ +|..|+|..
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~-n---gNwMhirYssr~~A~KALsk-ng~ii~g~v 260 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--S-N---GNWMHIRYSSRTHAQKALSK-NGTIIDGDV 260 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecC--C-C---CceEEEEecchhHHHHhhhh-cCeeeccce
Confidence 344557776644 4567889999988766443 1 2 24889999999999999984 899888753
No 140
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.53 E-value=0.33 Score=25.41 Aligned_cols=67 Identities=22% Similarity=0.426 Sum_probs=37.0
Q ss_pred eEEEc-CCCCCCCHHHHHHHhcccCc-----eeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 28 KLFIG-GLSYDTNETVLKDAFGQHGE-----IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 28 ~l~v~-~lp~~~~~~~l~~~f~~~g~-----i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
++||. +--..++..+|..++...+. |-.+.+.. .|+||+.... .+..++..|++..+.|+++.|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 35553 33445778888888876533 45565532 3788887655 6677888899999999999998
Q ss_pred ec
Q 034000 102 YA 103 (106)
Q Consensus 102 ~~ 103 (106)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 65
No 141
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.26 E-value=0.034 Score=41.57 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=60.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeee--CCeEEEEEec
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL--DGRNIRVNYA 103 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i--~~~~i~v~~~ 103 (106)
..+.++.|.+-..+-..|.-+|+.||.+...+.+++. .++.|+|...+.|-.|+.+++|+++ -|-+.+|.+|
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 4455667777788888899999999999998887765 4899999999999999999999974 4667777776
Q ss_pred c
Q 034000 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
+
T Consensus 372 k 372 (1007)
T KOG4574|consen 372 K 372 (1007)
T ss_pred c
Confidence 5
No 142
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.07 E-value=0.14 Score=36.76 Aligned_cols=69 Identities=19% Similarity=0.273 Sum_probs=50.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcc--cCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCC--eeeCCeEEEE
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQ--HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LLLDGRNIRV 100 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~--~~i~~~~i~v 100 (106)
..+.+.++-||..+..++++.+|.. +-++..|.+.... -=||.|++..+|+.|-+.|.. .+|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3566777999999999999999975 4566777765543 368999999999999875532 2356665443
No 143
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.59 E-value=0.51 Score=32.80 Aligned_cols=58 Identities=21% Similarity=0.162 Sum_probs=49.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccC-ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 87 (106)
.+-.+.|-|-++|.....+||...|..|+ .-..+.|+.+. ++|..|.+...|..||..
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 33568888999999999999999999997 46788898775 899999999999999873
No 144
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.37 E-value=0.15 Score=37.24 Aligned_cols=70 Identities=20% Similarity=0.331 Sum_probs=57.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
+.....++||+|+...+...-++.+...+|-|..+... .|||..|........|++.+....++|..+.+
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 34456789999999999999999999999977655332 28999999999999999988888888876554
No 145
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=91.28 E-value=0.68 Score=23.54 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=18.0
Q ss_pred HHHHHHhcccCceeEEEEeecC
Q 034000 41 TVLKDAFGQHGEIIEVKVICDR 62 (106)
Q Consensus 41 ~~l~~~f~~~g~i~~~~~~~~~ 62 (106)
.+||++|+..|+|.-+.+..-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccc
Confidence 6899999999999888774443
No 146
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=89.86 E-value=0.84 Score=23.61 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=43.0
Q ss_pred HHHHHHhcccC-ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 41 TVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 41 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
++|.+-|...| ++.++.-+....++......||+.....+.. +.++-..+.+.+|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecCC
Confidence 46777787777 6888877777666777778888887665522 2344456788889998754
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=89.03 E-value=0.27 Score=32.62 Aligned_cols=74 Identities=23% Similarity=0.241 Sum_probs=54.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i 98 (106)
...++|++++...+...+...++..+|................++++.+.|...+.+..++........++..+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccc
Confidence 46788999999998888788888888865555444433356678899999999999999998543345555443
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=86.43 E-value=0.032 Score=38.26 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=51.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeC
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~ 94 (106)
...++++|.+|+..+-..++.+.|..+|.+....+.-.. ...++-+.|........|++ .+|.++.
T Consensus 149 eirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~----~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 149 EIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKS----RSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred HHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC----CCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 345889999999999999999999999998877664332 33467799999999999998 4666543
No 149
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=86.07 E-value=1.5 Score=22.83 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=41.6
Q ss_pred HHHHHHhcccC-ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 41 TVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 41 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
.+|.+-|...| ++.++.-+....++.+...-+|+.....+... .++-..+++.++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46778888888 67888777766556666778887765543222 344456788889888653
No 150
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=84.75 E-value=3.8 Score=27.48 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=36.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCc-eeEEEEeecCCCCCeeeEEEEEeCCH
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVICDRVTGQSRGYGFVKFASE 78 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~~fv~f~~~ 78 (106)
..-++++|||.++.-.+|+.-+.+.+. ...+.|.- +++-||++|-+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCc
Confidence 466999999999999999999988763 45565521 346699999654
No 151
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.95 E-value=9.5 Score=28.09 Aligned_cols=75 Identities=21% Similarity=0.330 Sum_probs=56.0
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhccc----CceeEEEEeecCC----------CCC---------------------
Q 034000 23 ANSRTKLFIGGLSYD-TNETVLKDAFGQH----GEIIEVKVICDRV----------TGQ--------------------- 66 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~----g~i~~~~~~~~~~----------~~~--------------------- 66 (106)
....++|-|-|+.|+ +...+|..+|+.| |.|..+.|..... .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345678999999998 7889999998876 5788877644321 011
Q ss_pred ----------------eeeEEEEEeCCHHHHHHHHHHhCCeeeCCeE
Q 034000 67 ----------------SRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 67 ----------------~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~ 97 (106)
.-=||.|+|.+...|.+.-..++|+.+...-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~ 297 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSA 297 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccc
Confidence 1127899999999999999999999986543
No 152
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=78.42 E-value=10 Score=21.74 Aligned_cols=45 Identities=18% Similarity=0.339 Sum_probs=26.8
Q ss_pred CHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeC-CHHHHHHHHH
Q 034000 39 NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFA-SEAAAGEAIK 86 (106)
Q Consensus 39 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~-~~~~a~~al~ 86 (106)
+.+.|++.|+.|.++. +..+... ..+.|+++|.|. +..-...|++
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 4578999999998764 4444554 357899999997 4555555554
No 153
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=74.96 E-value=5.9 Score=22.90 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=36.4
Q ss_pred cccCCCCCceEEEcCCCCCCCHHHHHHHhcc---cCceeEEEEeecCCCCCeeeEEEEEeCCHHHHH
Q 034000 19 LLSDANSRTKLFIGGLSYDTNETVLKDAFGQ---HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82 (106)
Q Consensus 19 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~---~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 82 (106)
....+..+..+| -|..++..+++++|+. |..|..-.+.++-.-...-..||..|......+
T Consensus 70 i~gTPsgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~~e~ 133 (145)
T TIGR02542 70 IQGTPSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQFEE 133 (145)
T ss_pred EecCCCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccchhHH
Confidence 344444444433 3678899999999974 556666555555332223346787777654433
No 154
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=74.70 E-value=2.5 Score=23.09 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=21.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhc
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFG 48 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~ 48 (106)
....+++-|+|||....++++++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 34578899999999999999987764
No 155
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=69.41 E-value=0.098 Score=36.43 Aligned_cols=74 Identities=18% Similarity=0.313 Sum_probs=58.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
.+.+.++|+|.....+-+..++..||.+..|..+.-. ......-+.|...+.++.++..+++..+.+..+++.|
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~---~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD---SETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc---hHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 4568899999999999999999999999888653321 1122344778889999999999999988887777765
No 156
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=68.25 E-value=5.4 Score=24.87 Aligned_cols=73 Identities=14% Similarity=0.244 Sum_probs=49.3
Q ss_pred CceEEEcCCCCCCCH-----HHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCe-EEE
Q 034000 26 RTKLFIGGLSYDTNE-----TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR-NIR 99 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~-----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~-~i~ 99 (106)
..++.+..++..+.. .....+|..|.+....++++.. +...|.|.+...+..|...+++..+.|+ .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf------rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF------RRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh------ceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 445666666665432 3345556666665555555443 4577899999999999999999998887 666
Q ss_pred EEecc
Q 034000 100 VNYAH 104 (106)
Q Consensus 100 v~~~~ 104 (106)
...+.
T Consensus 84 ~yfaQ 88 (193)
T KOG4019|consen 84 LYFAQ 88 (193)
T ss_pred EEEcc
Confidence 65543
No 157
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=65.71 E-value=0.57 Score=33.81 Aligned_cols=71 Identities=10% Similarity=0.104 Sum_probs=51.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCC
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG 95 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~ 95 (106)
..+.++++|++++.+-.+|...+..+.-+..+.+-...........+++.|..-....-|+-+||++.+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 45788999999999999999999987655555443333233344568888987777777777788776543
No 158
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=65.35 E-value=3.3 Score=28.91 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=50.0
Q ss_pred CCCCceEEEcCCCCCCCH--------HHHHHHhcc--cCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHH
Q 034000 23 ANSRTKLFIGGLSYDTNE--------TVLKDAFGQ--HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIK 86 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~--------~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~ 86 (106)
....+.+|+.++...... +++..+|.. .+.+..+...++..+....|..|++|.....+++...
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 344567788877776544 489999988 5678888887777677788889999999999998873
No 159
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=65.01 E-value=12 Score=25.06 Aligned_cols=71 Identities=21% Similarity=0.449 Sum_probs=45.2
Q ss_pred CCCCCceEEEcCCCCC------------CCHHHHHHHhcccCceeEEEEeecC-----CCCCee-----eE---------
Q 034000 22 DANSRTKLFIGGLSYD------------TNETVLKDAFGQHGEIIEVKVICDR-----VTGQSR-----GY--------- 70 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~------------~~~~~l~~~f~~~g~i~~~~~~~~~-----~~~~~~-----g~--------- 70 (106)
+...+.|+|+.+||-. .+++-|+..|..||.|..+.++... .+++.. ||
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffe 224 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFE 224 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHH
Confidence 4445678999999843 3457799999999999998775432 233322 23
Q ss_pred EEEEeCCHHHHHHHHHHhCCee
Q 034000 71 GFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 71 ~fv~f~~~~~a~~al~~l~~~~ 92 (106)
+||+|........|+.+|.|..
T Consensus 225 ayvqfmeykgfa~amdalr~~k 246 (445)
T KOG2891|consen 225 AYVQFMEYKGFAQAMDALRGMK 246 (445)
T ss_pred HHHHHHHHHhHHHHHHHHhcch
Confidence 2355555555556666666654
No 160
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=63.59 E-value=11 Score=25.10 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=18.2
Q ss_pred EEEEeCCHHHHHHHHHHhCCee
Q 034000 71 GFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 71 ~fv~f~~~~~a~~al~~l~~~~ 92 (106)
|||.|++..+|+.+++.+....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~ 22 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR 22 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC
Confidence 6999999999999999654443
No 161
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=61.02 E-value=1.7 Score=28.01 Aligned_cols=66 Identities=30% Similarity=0.483 Sum_probs=50.0
Q ss_pred CceEEEcC----CCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCee
Q 034000 26 RTKLFIGG----LSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 26 ~~~l~v~~----lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
..+++-++ |-..++++.+...|+.-|+++..++..+. ++..+.++++.+........++....++.
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 34444454 55567788888889999999988888776 57778899999988888888887666654
No 162
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=60.11 E-value=23 Score=23.90 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=42.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecC-------CCCCeeeEEEEEeCCHHHHH
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDR-------VTGQSRGYGFVKFASEAAAG 82 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-------~~~~~~g~~fv~f~~~~~a~ 82 (106)
..+.|...|+..++.-..+..-|-+||+|..++++.+. .+.+......+.|-+.+.+.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICL 78 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHH
Confidence 35667778999889888888999999999999998775 11222346777777766543
No 163
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=59.61 E-value=29 Score=21.59 Aligned_cols=64 Identities=22% Similarity=0.298 Sum_probs=41.9
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHH
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEA 84 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 84 (106)
........+++.+++..++...+...|..+|.+....+.............++.+.....+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALES 283 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhh
Confidence 3444567889999999999999999999999986666655443332333333333333333333
No 164
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=57.16 E-value=27 Score=24.38 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=46.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCc-eeEEEEeecCC--CCCeeeEEEEEeCCHHHHHHHHHHhCCeee
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVICDRV--TGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~--~~~~~g~~fv~f~~~~~a~~al~~l~~~~i 93 (106)
....+-|.+||...++.++.+-..++-. +....+..... .....+.++|.|....+.......++|+.+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3456778999999999988887776532 22222221111 111246799999999998888888888764
No 165
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=51.82 E-value=30 Score=19.41 Aligned_cols=24 Identities=13% Similarity=0.321 Sum_probs=18.6
Q ss_pred CCeeeEEEEEeCCHHHHHHHHHHh
Q 034000 65 GQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 65 ~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
..---|+.++|.+.+...++..++
T Consensus 63 dE~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 63 DEEVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred CcEEEEEEEEcCchhHHHHHHHHh
Confidence 334458999999999998887654
No 166
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=49.28 E-value=39 Score=18.00 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.0
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhCCee
Q 034000 67 SRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 67 ~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
.+||-||+=.+..++..|++.+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 57899999999999999998776654
No 167
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=47.96 E-value=21 Score=23.35 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=27.7
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCce
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEI 53 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i 53 (106)
.......++|+-|+|...+++.+.++.+..|-+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~v 67 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHV 67 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhh
Confidence 445567889999999999999999999987743
No 168
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=47.64 E-value=35 Score=21.42 Aligned_cols=57 Identities=16% Similarity=0.037 Sum_probs=36.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCC-CCeeeEEEEEeCCHHHHHHHHH
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVT-GQSRGYGFVKFASEAAAGEAIK 86 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~al~ 86 (106)
.+++|.. |.+...++|.+.-+ |++.++........ ...+|-.||.|...+.+.+++.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 4555554 33344455555544 77888766554422 1467899999999999998775
No 169
>PRK11901 hypothetical protein; Reviewed
Probab=45.03 E-value=1e+02 Score=21.28 Aligned_cols=67 Identities=18% Similarity=0.134 Sum_probs=41.6
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCe-eeEEEEEeCCHHHHHHHHHHhCCe
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQS-RGYGFVKFASEAAAGEAIKEMDGL 91 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~al~~l~~~ 91 (106)
..+....+|.+... ..++.|..|...++ +..+.+.....+|+. .-.-+-.|.+.++|..|+..|...
T Consensus 240 s~p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 240 SAPASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred cCCCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 34445667776554 34677888877765 344444443333432 234456789999999999987543
No 170
>PHA01632 hypothetical protein
Probab=44.77 E-value=27 Score=17.36 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=16.5
Q ss_pred EEcCCCCCCCHHHHHHHhcc
Q 034000 30 FIGGLSYDTNETVLKDAFGQ 49 (106)
Q Consensus 30 ~v~~lp~~~~~~~l~~~f~~ 49 (106)
-|..+|...++++|++.+.+
T Consensus 20 lieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 20 LIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred ehhhcCCCCCHHHHHHHHHH
Confidence 35788999999999988764
No 171
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=43.46 E-value=20 Score=16.16 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=9.9
Q ss_pred CCCCHHHHHHHhcccC
Q 034000 36 YDTNETVLKDAFGQHG 51 (106)
Q Consensus 36 ~~~~~~~l~~~f~~~g 51 (106)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3567899999998754
No 172
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=42.69 E-value=56 Score=17.65 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=38.4
Q ss_pred EEcCCCCCCCHHHHHHHhcc-cC-ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 034000 30 FIGGLSYDTNETVLKDAFGQ-HG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87 (106)
Q Consensus 30 ~v~~lp~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 87 (106)
|+--.....+..+|++.++. || .+..+....-+ .+ ..=|+|.+.....|......
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~--~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KG--EKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--cEEEEEEeCCCCcHHHHHHh
Confidence 33346888999999999986 67 57777665554 22 22499999888777766544
No 173
>PF02946 GTF2I: GTF2I-like repeat; InterPro: IPR004212 This region of sequence similarity is found up to six times in a variety of proteins including general transcription factor II-I (GTF2I). It has been suggested that this may be a DNA binding domain [, ].; PDB: 2E3L_A 2D99_A 2DN4_A 2D9B_A 2EJE_A 1Q60_A 2DZR_A 2DN5_A 2DZQ_A 2ED2_A.
Probab=42.39 E-value=41 Score=17.89 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=17.8
Q ss_pred CceEEEcCCCCCCC--------HHHHHHHhcccCceeEE
Q 034000 26 RTKLFIGGLSYDTN--------ETVLKDAFGQHGEIIEV 56 (106)
Q Consensus 26 ~~~l~v~~lp~~~~--------~~~l~~~f~~~g~i~~~ 56 (106)
...|+|.+||..+. ...|++++..-..|..+
T Consensus 34 p~~v~V~GLPegi~fr~P~~Y~i~~L~~IL~~~~~I~Fv 72 (76)
T PF02946_consen 34 PEAVYVQGLPEGIPFRRPSNYGIPRLEKILEASSRIRFV 72 (76)
T ss_dssp TTTEEEES--TT--SS-TTTS-HHHHHHHHHTTTT-EEE
T ss_pred CCcEEEEeCCCCCcCCCCCcCCHHHHHHHHHccCCcEEE
Confidence 34699999987654 46777777765555543
No 174
>PF15063 TC1: Thyroid cancer protein 1
Probab=39.55 E-value=18 Score=19.20 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=22.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCce
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEI 53 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i 53 (106)
.++--+.||-.+++...|+++|..-|+.
T Consensus 25 ~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 25 SRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred HhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 3444477899999999999999998864
No 175
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=38.75 E-value=63 Score=17.12 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=37.7
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-cC-ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHH
Q 034000 29 LFIGGLSYDTNETVLKDAFGQ-HG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87 (106)
Q Consensus 29 l~v~~lp~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 87 (106)
-|+-..+...+..+|++.++. || .+..+....-+. ...=|+|.+.....|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 344457889999999999886 66 567666554442 222499999877776655443
No 176
>PRK10905 cell division protein DamX; Validated
Probab=32.44 E-value=1.7e+02 Score=20.22 Aligned_cols=69 Identities=19% Similarity=0.061 Sum_probs=42.0
Q ss_pred ccccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCC-eeeEEEEEeCCHHHHHHHHHHhCC
Q 034000 18 RLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ-SRGYGFVKFASEAAAGEAIKEMDG 90 (106)
Q Consensus 18 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~al~~l~~ 90 (106)
+....+....+|.|..+.. .+.++.|..+.| +....+.....+|+ -.-.-+-.|.+.++|++|+..|..
T Consensus 239 ~L~sapa~~YTLQL~A~Ss---~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 239 SLKSAPSSHYTLQLSSSSN---YDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred HHhcCCCCceEEEEEecCC---HHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 3344555667787766554 456666766665 23222333333444 233456678999999999998754
No 177
>COG5584 Predicted small secreted protein [Function unknown]
Probab=32.39 E-value=97 Score=17.36 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=23.1
Q ss_pred CCCCCCCHHHHHHHhcccCceeEEEEeecCC
Q 034000 33 GLSYDTNETVLKDAFGQHGEIIEVKVICDRV 63 (106)
Q Consensus 33 ~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 63 (106)
++..+..-.-+++.|+++|+|...++...+.
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~pe 59 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEPE 59 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEecc
Confidence 3445555566788899999999888877764
No 178
>PF14893 PNMA: PNMA
Probab=31.80 E-value=39 Score=23.24 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=21.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcc
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQ 49 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~ 49 (106)
+..+.|-|.+||.++++.+|++.+..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHH
Confidence 44667889999999999988887653
No 179
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=28.22 E-value=28 Score=17.96 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=15.2
Q ss_pred CCCCceEEEcCCCCCCCHHH
Q 034000 23 ANSRTKLFIGGLSYDTNETV 42 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~ 42 (106)
....++++|+++|..+-.+.
T Consensus 24 s~tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 24 SLTSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred HHcCceEEECCCChHHHHcC
Confidence 34578899999998876543
No 180
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=27.84 E-value=38 Score=19.72 Aligned_cols=31 Identities=35% Similarity=0.313 Sum_probs=24.5
Q ss_pred EEEcCCCCC-CCHHHHHHHhcccCceeEEEEe
Q 034000 29 LFIGGLSYD-TNETVLKDAFGQHGEIIEVKVI 59 (106)
Q Consensus 29 l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~ 59 (106)
+.|.|||.. .+++.++.+.+..|.+..+...
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 445799988 6778888888999998877653
No 181
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=27.38 E-value=21 Score=20.53 Aligned_cols=11 Identities=36% Similarity=0.812 Sum_probs=8.9
Q ss_pred CCceEEEcCCC
Q 034000 25 SRTKLFIGGLS 35 (106)
Q Consensus 25 ~~~~l~v~~lp 35 (106)
....+||+++|
T Consensus 91 ~~~~lyvGG~p 101 (131)
T PF00054_consen 91 VDGPLYVGGLP 101 (131)
T ss_dssp ECSEEEESSSS
T ss_pred cccCEEEccCC
Confidence 34569999999
No 182
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=26.95 E-value=1.2e+02 Score=20.15 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=21.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCce
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEI 53 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i 53 (106)
.....|+|||++++..-+.+++...-.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 3456699999999999988888764433
No 183
>smart00457 MACPF membrane-attack complex / perforin.
Probab=26.65 E-value=33 Score=21.27 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=22.1
Q ss_pred EcCCCCCCCHHHHHHHhcccCc--eeEEEE
Q 034000 31 IGGLSYDTNETVLKDAFGQHGE--IIEVKV 58 (106)
Q Consensus 31 v~~lp~~~~~~~l~~~f~~~g~--i~~~~~ 58 (106)
+..||.........+||..||. |..+.+
T Consensus 30 l~~Lp~~~~~~~~~~fi~~yGTH~i~s~~~ 59 (194)
T smart00457 30 LRDLPDQYNRGAYARFIDKYGTHYITSATL 59 (194)
T ss_pred HHhCccccCHHHHHHHHHHhCCeEEEeeee
Confidence 4588999999999999999995 454433
No 184
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=26.01 E-value=1.1e+02 Score=15.98 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=25.1
Q ss_pred HhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCee
Q 034000 46 AFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 46 ~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
-+.+||.|..+.= +. .|+ +-|.+.++++..+..+....
T Consensus 16 ~L~kfG~i~Y~Sk-------k~-kYv-vlYvn~~~~e~~~~kl~~l~ 53 (71)
T PF09902_consen 16 QLRKFGDIHYVSK-------KM-KYV-VLYVNEEDVEEIIEKLKKLK 53 (71)
T ss_pred hHhhcccEEEEEC-------Cc-cEE-EEEECHHHHHHHHHHHhcCC
Confidence 4568998876622 11 244 44889999999888776543
No 185
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=25.90 E-value=1.4e+02 Score=16.95 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=29.9
Q ss_pred HHHHHHhcccCceeEEE-EeecCCC--------------CCeeeEEEEEeCCHHHHHHHHHHh
Q 034000 41 TVLKDAFGQHGEIIEVK-VICDRVT--------------GQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 41 ~~l~~~f~~~g~i~~~~-~~~~~~~--------------~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
...-.+|..||.+..+. +-.+-.. +..--|++|+|.+.+...++..++
T Consensus 23 ~~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 23 EKAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 34567788899765543 2222222 333448999999999998887654
No 186
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.89 E-value=1.8e+02 Score=21.20 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=41.9
Q ss_pred EcCCCCCC---CHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034000 31 IGGLSYDT---NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 31 v~~lp~~~---~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i 98 (106)
|+||+.-. ....++++-.+||+|-.+++-. .-.|...+.+.|+.++.. ++..+.+|..
T Consensus 37 IGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 37 IGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred cccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 57776543 3456666667899999877732 246778899999999985 7777777764
No 187
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=25.18 E-value=67 Score=14.18 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=13.0
Q ss_pred CCCHHHHHHHhcccCc
Q 034000 37 DTNETVLKDAFGQHGE 52 (106)
Q Consensus 37 ~~~~~~l~~~f~~~g~ 52 (106)
.++.++|++.+..+|-
T Consensus 3 tWs~~~L~~wL~~~gi 18 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGI 18 (38)
T ss_pred CCCHHHHHHHHHHcCC
Confidence 4678899999998873
No 188
>PRK02302 hypothetical protein; Provisional
Probab=25.01 E-value=1.3e+02 Score=16.51 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=25.1
Q ss_pred HhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCee
Q 034000 46 AFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 46 ~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
-+.+||.|....= +. .|+ |-|.+.++++..+..+....
T Consensus 22 ~LrkfG~I~Y~Sk-------k~-kYv-vlYvn~~~~e~~~~kl~~l~ 59 (89)
T PRK02302 22 KLSKYGDIVYHSK-------RS-RYL-VLYVNKEDVEQKLEELSKLK 59 (89)
T ss_pred HHhhcCcEEEEec-------cc-cEE-EEEECHHHHHHHHHHHhcCC
Confidence 3568998876622 11 244 44889999999988776553
No 189
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=24.74 E-value=2.1e+02 Score=18.83 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=41.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccC-ceeEEEEeecCC--CCCeeeEEEEEeCCHHHHHHHHHHh
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRV--TGQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~--~~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
.-++.|.-+|-...++-++++|++.| .|..-.+..+.. ......|..+......-.+.++..+
T Consensus 118 pL~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S~y~~l~L~g~~rl~daL~HL 183 (245)
T PF12623_consen 118 PLEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDSRYVDLTLTGTVRLADALNHL 183 (245)
T ss_pred ceEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCCcceEEEEeeeEEHHHHHhhh
Confidence 44667778888888899999999998 555555555542 1122336667776666666666544
No 190
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=24.39 E-value=83 Score=15.63 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=12.3
Q ss_pred EeCCHHHHHHHHHHh
Q 034000 74 KFASEAAAGEAIKEM 88 (106)
Q Consensus 74 ~f~~~~~a~~al~~l 88 (106)
.|.+.+++..|+..+
T Consensus 9 ~F~~~~e~k~av~~y 23 (67)
T PF03108_consen 9 TFPSKEEFKEAVREY 23 (67)
T ss_pred EECCHHHHHHHHHHH
Confidence 588999999999754
No 191
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=24.05 E-value=95 Score=14.53 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=20.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCc
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHGE 52 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~ 52 (106)
..+++.+........++.+.+..+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 35677777667788999999998875
No 192
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=23.16 E-value=1.5e+02 Score=16.56 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=24.2
Q ss_pred CCCHHHHHHHhc-ccCceeEEEEeecCC----CCCeeeEEEEEeCCHHHHHH
Q 034000 37 DTNETVLKDAFG-QHGEIIEVKVICDRV----TGQSRGYGFVKFASEAAAGE 83 (106)
Q Consensus 37 ~~~~~~l~~~f~-~~g~i~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~ 83 (106)
+.+..++++-+. .++.-...-++..-. .+...|||.| |.+.+.+.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 556677776664 355332332322221 2445666666 667666554
No 193
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=22.74 E-value=1.3e+02 Score=15.48 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=21.0
Q ss_pred HHHHHHHhcccCceeEEEEeecCCCCCeeeEEEE
Q 034000 40 ETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFV 73 (106)
Q Consensus 40 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv 73 (106)
+..+.+.|-+-..+..+.+.-.+.- .+|-|||
T Consensus 32 e~eler~fl~~P~v~e~~l~EKKri--~~G~gyV 63 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALYEKKRI--RKGAGYV 63 (64)
T ss_pred HHHhhhhccCCCCceEEEEEEEEee--eCCceeE
Confidence 4567788877778888888765533 3444554
No 194
>PF00220 Hormone_4: Neurohypophysial hormones, N-terminal Domain; InterPro: IPR022423 Oxytocin (or ocytocin) and vasopressin [] are small (nine amino acid residues), structurally and functionally related neurohypophysial peptide hormones. Oxytocin causes contraction of the smooth muscle of the uterus and of the mammary gland while vasopressin has a direct antidiuretic action on the kidney and also causes vasoconstriction of the peripheral vessels. Like the majority of active peptides, both hormones are synthesized as larger protein precursors that are enzymatically converted to their mature forms. Peptides belonging to this family are also found in birds, fish, reptiles and amphibians (mesotocin, isotocin, valitocin, glumitocin, aspargtocin, vasotocin, seritocin, asvatocin, phasvatocin), in worms (annetocin), octopi (cephalotocin), locust (locupressin or neuropeptide F1/F2) and in molluscs (conopressins G and S) []. The pattern developed to detect this category of peptides spans their entire sequence and includes four invariant amino acid residues. .; GO: 0005185 neurohypophyseal hormone activity, 0005576 extracellular region
Probab=21.55 E-value=43 Score=10.15 Aligned_cols=6 Identities=17% Similarity=0.412 Sum_probs=2.6
Q ss_pred EEcCCC
Q 034000 30 FIGGLS 35 (106)
Q Consensus 30 ~v~~lp 35 (106)
||+|.|
T Consensus 2 ~i~nCP 7 (9)
T PF00220_consen 2 YIRNCP 7 (9)
T ss_pred ccccCC
Confidence 344444
No 195
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=20.99 E-value=1.9e+02 Score=17.16 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=16.1
Q ss_pred eeeEEEEEeCCHHHHHHHHHHh
Q 034000 67 SRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 67 ~~g~~fv~f~~~~~a~~al~~l 88 (106)
..|..++-|.+.++|++..+..
T Consensus 113 pMg~~~~aF~~~~~A~~F~~~~ 134 (149)
T PF05573_consen 113 PMGPDLIAFASKEDAEAFAKEH 134 (149)
T ss_dssp TTS--EEEES-HHHHHHHHHHT
T ss_pred CCCCcccccCCHHHHHHHHHHc
Confidence 3468899999999999999874
No 196
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.75 E-value=1.4e+02 Score=15.21 Aligned_cols=24 Identities=25% Similarity=0.211 Sum_probs=18.6
Q ss_pred EEEEEeCCHHHHHHHHHHhCCeee
Q 034000 70 YGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 70 ~~fv~f~~~~~a~~al~~l~~~~i 93 (106)
+.++.|.+..+|.++-+.+....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 678999999999888776655443
No 197
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=20.26 E-value=1.9e+02 Score=16.48 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=27.2
Q ss_pred HHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHH
Q 034000 41 TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAI 85 (106)
Q Consensus 41 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al 85 (106)
.++...++..| |.+-.|..+. ....-||++++.|.+..-+.+
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde--~~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDE--EENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecC--CcccEEEEEEEcChHHHHHHH
Confidence 45667777766 7777777664 224569999999555444443
No 198
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=20.09 E-value=63 Score=17.70 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=22.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccC--ceeEEEEe
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVI 59 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~ 59 (106)
.+.+.|.+.+||..+..+.|+= +..| .|..+.+.
T Consensus 21 ~G~~~i~~~~Lp~~~d~~Sl~V--~~~g~~~i~~v~~~ 56 (104)
T PF13600_consen 21 AGENEIIFEGLPPSLDPDSLRV--SGEGGVTILSVRFR 56 (104)
T ss_pred CCceEEEEeCCCcccCCCcEEE--EecCCEEEEEEEEE
Confidence 4667999999999998777642 2333 34555443
Done!