Query 034000
Match_columns 106
No_of_seqs 103 out of 1613
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 14:33:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 1.1E-25 3.8E-30 125.1 12.0 81 25-105 18-98 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 9.2E-24 3.1E-28 119.4 12.5 82 24-105 4-85 (110)
3 3bs9_A Nucleolysin TIA-1 isofo 99.9 3E-23 1E-27 112.4 11.7 82 24-105 4-85 (87)
4 3mdf_A Peptidyl-prolyl CIS-tra 99.9 2.2E-23 7.4E-28 112.5 10.9 82 23-104 4-85 (85)
5 3md1_A Nuclear and cytoplasmic 99.9 4.6E-23 1.6E-27 110.8 11.9 79 27-105 2-80 (83)
6 2do4_A Squamous cell carcinoma 99.9 1.1E-22 3.7E-27 113.0 13.0 84 21-105 12-95 (100)
7 2cqc_A Arginine/serine-rich sp 99.9 7E-23 2.4E-27 112.6 12.0 85 21-105 10-94 (95)
8 2lxi_A RNA-binding protein 10; 99.9 3.1E-24 1.1E-28 117.6 6.4 80 26-105 1-82 (91)
9 1p27_B RNA-binding protein 8A; 99.9 7.3E-23 2.5E-27 114.7 11.5 84 22-105 19-102 (106)
10 2cpz_A CUG triplet repeat RNA- 99.9 1.1E-22 3.8E-27 115.5 12.4 85 21-105 20-104 (115)
11 2e5h_A Zinc finger CCHC-type a 99.9 1E-22 3.5E-27 111.8 11.7 84 21-104 11-94 (94)
12 2khc_A Testis-specific RNP-typ 99.9 4.6E-23 1.6E-27 117.5 10.6 84 21-104 35-118 (118)
13 2cq0_A Eukaryotic translation 99.9 1.1E-22 3.8E-27 113.4 12.0 84 22-105 11-94 (103)
14 2la6_A RNA-binding protein FUS 99.9 9.7E-23 3.3E-27 113.0 11.6 85 20-104 7-99 (99)
15 2dgo_A Cytotoxic granule-assoc 99.9 1.9E-22 6.3E-27 114.5 12.9 86 20-105 9-94 (115)
16 1whw_A Hypothetical protein ri 99.9 8.7E-23 3E-27 113.1 11.2 84 22-105 4-87 (99)
17 2lkz_A RNA-binding protein 5; 99.9 2.2E-23 7.5E-28 115.0 8.1 83 23-105 6-94 (95)
18 2kxn_B Transformer-2 protein h 99.9 2.9E-23 1E-27 120.3 8.9 87 19-105 39-125 (129)
19 2jrs_A RNA-binding protein 39; 99.9 1.2E-22 4.3E-27 114.3 11.1 86 20-105 20-105 (108)
20 1x5u_A Splicing factor 3B subu 99.9 9.1E-23 3.1E-27 114.1 10.4 85 21-105 10-94 (105)
21 2x1f_A MRNA 3'-END-processing 99.9 1.3E-22 4.4E-27 111.9 10.8 80 26-105 2-81 (96)
22 2dnz_A Probable RNA-binding pr 99.9 1.3E-22 4.6E-27 111.5 10.7 82 24-105 3-84 (95)
23 2dnm_A SRP46 splicing factor; 99.9 5.3E-23 1.8E-27 114.7 9.0 85 21-105 8-92 (103)
24 4f25_A Polyadenylate-binding p 99.9 2.1E-22 7.1E-27 114.5 11.5 79 25-105 4-82 (115)
25 3p5t_L Cleavage and polyadenyl 99.9 1.6E-23 5.6E-28 114.4 6.4 79 27-105 2-82 (90)
26 2dgs_A DAZ-associated protein 99.9 2.3E-22 7.7E-27 111.5 11.1 83 22-105 6-88 (99)
27 2div_A TRNA selenocysteine ass 99.9 1.4E-22 4.7E-27 112.3 10.1 84 22-105 5-93 (99)
28 3s7r_A Heterogeneous nuclear r 99.9 6.3E-22 2.1E-26 107.3 12.2 82 21-103 6-87 (87)
29 1oo0_B CG8781-PA, drosophila Y 99.9 2.4E-22 8.2E-27 113.3 11.0 85 21-105 21-105 (110)
30 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.3E-22 4.3E-27 113.0 9.7 84 22-105 8-91 (102)
31 2ywk_A Putative RNA-binding pr 99.9 3.5E-22 1.2E-26 109.8 11.0 84 21-105 11-94 (95)
32 3ns6_A Eukaryotic translation 99.9 3.7E-23 1.3E-27 115.0 7.1 82 24-105 4-92 (100)
33 1u6f_A Tcubp1, RNA-binding pro 99.9 4.8E-22 1.6E-26 116.2 12.2 86 20-105 36-121 (139)
34 1x4h_A RNA-binding protein 28; 99.9 3.4E-22 1.2E-26 112.7 11.2 85 21-105 10-100 (111)
35 1x5t_A Splicing factor 3B subu 99.9 1.5E-22 5E-27 111.6 9.4 82 24-105 3-85 (96)
36 1x5s_A Cold-inducible RNA-bind 99.9 1.3E-22 4.5E-27 112.9 9.3 84 22-105 8-91 (102)
37 2cph_A RNA binding motif prote 99.9 2.4E-22 8.2E-27 112.7 10.4 85 21-105 10-96 (107)
38 2cpf_A RNA binding motif prote 99.9 2.7E-22 9.3E-27 110.9 10.4 82 24-105 3-87 (98)
39 3n9u_C Cleavage and polyadenyl 99.9 2.9E-22 1E-26 119.4 11.1 81 25-105 54-136 (156)
40 2d9p_A Polyadenylate-binding p 99.9 5.7E-22 1.9E-26 110.5 11.6 83 21-105 10-92 (103)
41 3ulh_A THO complex subunit 4; 99.9 7.2E-22 2.5E-26 110.8 12.0 84 20-104 23-106 (107)
42 3ucg_A Polyadenylate-binding p 99.9 3.9E-22 1.3E-26 108.4 10.6 80 25-105 5-84 (89)
43 2dng_A Eukaryotic translation 99.9 9.2E-22 3.1E-26 109.7 12.0 83 21-105 10-92 (103)
44 2dnh_A Bruno-like 5, RNA bindi 99.9 8.5E-22 2.9E-26 110.1 11.9 83 22-105 11-96 (105)
45 2cqd_A RNA-binding region cont 99.9 6.6E-22 2.2E-26 112.5 11.4 85 20-105 11-95 (116)
46 4a8x_A RNA-binding protein wit 99.9 4.1E-22 1.4E-26 108.1 9.9 81 25-105 3-84 (88)
47 2fy1_A RNA-binding motif prote 99.9 3.4E-22 1.2E-26 113.8 9.9 83 22-105 3-85 (116)
48 2cq4_A RNA binding motif prote 99.9 1.7E-22 5.6E-27 114.6 8.4 81 24-105 23-103 (114)
49 2cqp_A RNA-binding protein 12; 99.9 4.3E-22 1.5E-26 110.1 9.3 84 22-105 11-94 (98)
50 2kt5_A RNA and export factor-b 99.9 2E-21 6.8E-26 111.7 12.4 83 22-105 31-113 (124)
51 2do0_A HnRNP M, heterogeneous 99.9 2.5E-21 8.5E-26 109.7 12.6 83 22-105 11-93 (114)
52 2dgp_A Bruno-like 4, RNA bindi 99.9 3.4E-22 1.2E-26 111.9 8.9 85 21-105 8-95 (106)
53 2cpe_A RNA-binding protein EWS 99.9 6.5E-22 2.2E-26 112.0 10.1 84 22-105 11-102 (113)
54 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.9 1.5E-21 5.1E-26 114.0 11.9 83 21-103 58-140 (140)
55 1p1t_A Cleavage stimulation fa 99.9 4.9E-22 1.7E-26 110.9 9.3 81 25-105 7-87 (104)
56 2cq3_A RNA-binding protein 9; 99.9 2.9E-21 9.9E-26 107.7 12.4 84 20-105 9-92 (103)
57 2dgx_A KIAA0430 protein; RRM d 99.9 1.1E-21 3.8E-26 108.2 10.5 80 23-105 6-89 (96)
58 2err_A Ataxin-2-binding protei 99.9 5.2E-22 1.8E-26 111.9 9.3 88 16-105 19-106 (109)
59 2cqi_A Nucleolysin TIAR; RNA r 99.9 2.7E-21 9.4E-26 107.8 12.1 83 21-105 10-92 (103)
60 2ek1_A RNA-binding protein 12; 99.9 4E-22 1.4E-26 109.6 8.6 82 24-105 13-94 (95)
61 1wi8_A EIF-4B, eukaryotic tran 99.9 1E-21 3.5E-26 109.7 10.3 82 22-105 11-93 (104)
62 2dgv_A HnRNP M, heterogeneous 99.9 1.2E-21 4.2E-26 107.1 10.4 82 22-105 4-85 (92)
63 2dgw_A Probable RNA-binding pr 99.9 3.6E-21 1.2E-25 105.1 12.2 82 21-105 5-86 (91)
64 3ex7_B RNA-binding protein 8A; 99.9 6.3E-22 2.2E-26 113.9 9.6 85 21-105 17-101 (126)
65 1h2v_Z 20 kDa nuclear CAP bind 99.9 2.8E-21 9.4E-26 115.0 12.6 83 23-105 36-118 (156)
66 2dhg_A TRNA selenocysteine ass 99.9 6E-22 2E-26 110.6 9.2 83 22-105 5-89 (104)
67 1s79_A Lupus LA protein; RRM, 99.9 5E-22 1.7E-26 111.0 8.7 81 22-104 7-87 (103)
68 2rs2_A Musashi-1, RNA-binding 99.9 1.1E-21 3.7E-26 110.6 10.2 88 17-105 16-103 (109)
69 2j76_E EIF-4B, EIF4B, eukaryot 99.9 1.6E-22 5.5E-27 112.4 6.6 85 19-105 12-97 (100)
70 2dh8_A DAZ-associated protein 99.9 8.2E-22 2.8E-26 110.2 9.5 84 21-105 11-94 (105)
71 1x4e_A RNA binding motif, sing 99.9 1.4E-22 4.7E-27 109.5 5.7 83 23-105 2-84 (85)
72 2cqg_A TDP-43, TAR DNA-binding 99.9 8.7E-21 3E-25 105.7 13.1 84 20-105 9-92 (103)
73 2db1_A Heterogeneous nuclear r 99.9 2.4E-21 8.3E-26 110.6 10.8 83 21-105 12-97 (118)
74 1x4a_A Splicing factor, argini 99.9 6.1E-21 2.1E-25 107.3 12.2 82 21-105 17-98 (109)
75 2kn4_A Immunoglobulin G-bindin 99.9 2.4E-21 8.4E-26 115.3 11.1 84 22-105 66-149 (158)
76 2lea_A Serine/arginine-rich sp 99.9 3.1E-22 1E-26 116.8 6.7 86 20-105 41-126 (135)
77 1rk8_A CG8781-PA, CG8781-PA pr 99.9 5.5E-21 1.9E-25 114.7 12.3 83 23-105 69-151 (165)
78 2jwn_A Embryonic polyadenylate 99.9 2.6E-21 8.7E-26 111.1 10.3 80 25-105 35-114 (124)
79 2mss_A Protein (musashi1); RNA 99.9 4.6E-22 1.6E-26 105.1 6.6 75 28-103 1-75 (75)
80 1x5o_A RNA binding motif, sing 99.9 9.5E-21 3.2E-25 107.3 12.0 84 21-105 20-111 (114)
81 2m2b_A RNA-binding protein 10; 99.9 2.6E-22 8.9E-27 116.4 5.6 85 20-105 17-107 (131)
82 2cpi_A CCR4-NOT transcription 99.9 3.7E-21 1.3E-25 108.7 10.2 83 23-105 12-100 (111)
83 2dis_A Unnamed protein product 99.9 2E-21 6.9E-26 109.2 8.8 82 24-105 6-91 (109)
84 1sjq_A Polypyrimidine tract-bi 99.9 2.2E-21 7.4E-26 108.4 8.5 77 23-105 13-91 (105)
85 2hgl_A HNRPF protein, heteroge 99.9 2.8E-21 9.4E-26 112.8 9.2 83 21-105 39-124 (136)
86 1wel_A RNA-binding protein 12; 99.9 1.1E-21 3.9E-26 112.7 7.5 84 21-105 20-103 (124)
87 2cpy_A RNA-binding protein 12; 99.9 3.1E-21 1E-25 109.5 9.1 82 22-105 11-93 (114)
88 1x4b_A Heterogeneous nuclear r 99.9 5.2E-21 1.8E-25 108.7 10.0 80 25-105 26-105 (116)
89 1uaw_A Mouse-musashi-1; RNP-ty 99.9 6.5E-22 2.2E-26 104.9 5.8 76 27-103 1-76 (77)
90 2ki2_A SS-DNA binding protein 99.9 3E-22 1E-26 109.2 4.5 78 27-105 2-79 (90)
91 1wg5_A Heterogeneous nuclear r 99.9 4.9E-21 1.7E-25 107.1 9.4 83 21-105 10-93 (104)
92 3r27_A HnRNP L, heterogeneous 99.9 7.9E-21 2.7E-25 105.3 9.8 79 21-105 16-96 (100)
93 2nlw_A Eukaryotic translation 99.9 3.8E-21 1.3E-25 107.7 8.7 81 22-104 11-98 (105)
94 2a3j_A U1 small nuclear ribonu 99.9 5.4E-21 1.8E-25 110.4 9.4 81 22-105 25-109 (127)
95 2fc9_A NCL protein; structure 99.9 1.3E-20 4.5E-25 104.6 10.6 80 22-105 11-90 (101)
96 2jvo_A Nucleolar protein 3; nu 99.9 8.7E-21 3E-25 106.8 9.8 80 18-105 23-102 (108)
97 2xnq_A Nuclear polyadenylated 99.9 1.8E-20 6.1E-25 103.6 10.9 82 16-105 12-94 (97)
98 2cq1_A PTB-like protein L; RRM 99.9 2.4E-20 8.2E-25 103.8 11.1 78 22-105 11-90 (101)
99 1x4c_A Splicing factor, argini 99.9 2.1E-20 7.2E-25 105.1 11.0 77 22-105 11-92 (108)
100 3md3_A Nuclear and cytoplasmic 99.8 3.7E-20 1.3E-24 110.1 12.7 84 22-105 83-166 (166)
101 4f02_A Polyadenylate-binding p 99.8 2.3E-20 8E-25 115.8 12.2 83 23-105 12-94 (213)
102 1x4d_A Matrin 3; structural ge 99.8 5.2E-21 1.8E-25 106.6 8.1 76 24-105 13-91 (102)
103 3q2s_C Cleavage and polyadenyl 99.8 4.8E-21 1.6E-25 120.3 8.9 81 25-105 67-149 (229)
104 2ytc_A PRE-mRNA-splicing facto 99.8 1.6E-20 5.4E-25 101.2 9.8 78 21-104 7-85 (85)
105 2jvr_A Nucleolar protein 3; RN 99.8 7.7E-21 2.6E-25 107.4 8.8 81 21-105 23-104 (111)
106 3lqv_A PRE-mRNA branch site pr 99.8 1.2E-20 4E-25 107.1 9.6 81 22-105 4-84 (115)
107 1why_A Hypothetical protein ri 99.8 2E-20 6.7E-25 103.3 10.2 78 22-105 13-92 (97)
108 1wez_A HnRNP H', FTP-3, hetero 99.8 9.7E-21 3.3E-25 105.6 9.0 82 21-105 10-91 (102)
109 2fc8_A NCL protein; structure 99.8 4.4E-20 1.5E-24 102.6 11.7 82 21-105 10-91 (102)
110 2dnq_A RNA-binding protein 4B; 99.8 1.8E-20 6.1E-25 102.1 9.7 76 22-105 4-79 (90)
111 1x4g_A Nucleolysin TIAR; struc 99.8 1.8E-20 6.2E-25 105.4 9.8 79 21-105 20-98 (109)
112 2ad9_A Polypyrimidine tract-bi 99.8 1.2E-20 4.2E-25 107.6 9.0 78 22-105 27-106 (119)
113 1fxl_A Paraneoplastic encephal 99.8 5.4E-20 1.8E-24 109.5 12.2 80 26-105 2-81 (167)
114 2dnn_A RNA-binding protein 12; 99.8 1.4E-20 4.7E-25 106.1 8.9 79 24-105 14-92 (109)
115 1nu4_A U1A RNA binding domain; 99.8 6E-21 2E-25 105.2 7.2 81 23-106 5-89 (97)
116 2dgt_A RNA-binding protein 30; 99.8 6.6E-20 2.3E-24 100.2 11.1 77 21-105 5-81 (92)
117 2la4_A Nuclear and cytoplasmic 99.8 1.4E-20 4.9E-25 104.5 8.1 79 21-105 22-100 (101)
118 1b7f_A Protein (SXL-lethal pro 99.8 4.2E-20 1.4E-24 110.3 10.6 81 25-105 2-82 (168)
119 2lmi_A GRSF-1, G-rich sequence 99.8 2.9E-21 1E-25 108.5 5.1 83 21-105 6-91 (107)
120 2cpx_A Hypothetical protein FL 99.8 3.8E-21 1.3E-25 109.1 5.6 84 22-105 21-104 (115)
121 2wbr_A GW182, gawky, LD47780P; 99.8 4.8E-20 1.6E-24 99.4 9.3 74 25-104 6-79 (89)
122 1iqt_A AUF1, heterogeneous nuc 99.8 3.2E-21 1.1E-25 101.8 4.7 75 28-103 1-75 (75)
123 1fjc_A Nucleolin RBD2, protein 99.8 3E-20 1E-24 102.3 8.8 79 22-105 12-90 (96)
124 2dnp_A RNA-binding protein 14; 99.8 6.5E-20 2.2E-24 99.9 10.0 76 22-105 5-80 (90)
125 2cpj_A Non-POU domain-containi 99.8 3.9E-20 1.3E-24 102.4 9.1 78 22-105 11-88 (99)
126 1fj7_A Nucleolin RBD1, protein 99.8 1.1E-21 3.7E-26 109.0 2.7 82 22-105 13-94 (101)
127 2e5j_A Methenyltetrahydrofolat 99.8 3.2E-20 1.1E-24 102.4 8.7 79 22-105 15-93 (97)
128 2g4b_A Splicing factor U2AF 65 99.8 9.1E-20 3.1E-24 109.2 11.4 82 23-104 91-172 (172)
129 1wf1_A RNA-binding protein RAL 99.8 6.4E-20 2.2E-24 103.3 10.1 76 22-105 23-99 (110)
130 2krb_A Eukaryotic translation 99.8 8.9E-21 3.1E-25 101.5 6.2 73 26-100 1-80 (81)
131 1wex_A Hypothetical protein (r 99.8 4.9E-20 1.7E-24 103.1 9.2 77 23-105 12-90 (104)
132 1whx_A Hypothetical protein ri 99.8 2.2E-20 7.4E-25 105.6 7.8 75 25-105 9-83 (111)
133 2cpd_A Apobec-1 stimulating pr 99.8 2.4E-19 8.3E-24 99.2 11.7 77 21-105 10-88 (99)
134 2dgu_A Heterogeneous nuclear r 99.8 1.2E-19 4.1E-24 101.1 10.5 75 23-105 8-82 (103)
135 2xs2_A Deleted in azoospermia- 99.8 1.9E-20 6.5E-25 104.1 7.1 78 24-104 7-84 (102)
136 2f3j_A RNA and export factor b 99.8 4.1E-20 1.4E-24 112.1 9.0 82 23-105 85-166 (177)
137 1wg1_A KIAA1579 protein, homol 99.8 9.2E-20 3.2E-24 99.0 9.1 75 25-106 4-78 (88)
138 2hvz_A Splicing factor, argini 99.8 2E-20 6.7E-25 103.9 6.5 74 27-105 1-74 (101)
139 2i2y_A Fusion protein consists 99.8 6.5E-20 2.2E-24 108.4 9.1 81 20-105 67-147 (150)
140 2yh0_A Splicing factor U2AF 65 99.8 2.1E-19 7.2E-24 109.8 11.5 83 24-106 112-194 (198)
141 2dha_A FLJ20171 protein; RRM d 99.8 4.3E-20 1.5E-24 106.1 7.8 81 23-105 20-104 (123)
142 2qfj_A FBP-interacting repress 99.8 2.5E-19 8.6E-24 110.7 11.6 82 24-105 123-204 (216)
143 1x4f_A Matrin 3; structural ge 99.8 1.1E-19 3.8E-24 102.6 9.1 77 23-105 22-101 (112)
144 2e44_A Insulin-like growth fac 99.8 8.6E-20 3E-24 100.4 8.4 80 22-105 11-91 (96)
145 2lcw_A RNA-binding protein FUS 99.7 7.6E-22 2.6E-26 112.2 0.0 83 23-105 4-94 (116)
146 1l3k_A Heterogeneous nuclear r 99.8 2.9E-19 1E-23 109.0 11.5 84 21-105 8-91 (196)
147 2cqh_A IGF-II mRNA-binding pro 99.8 5.9E-20 2E-24 100.6 7.6 77 22-105 4-82 (93)
148 2kvi_A Nuclear polyadenylated 99.8 6.6E-20 2.2E-24 101.0 7.7 76 22-105 6-82 (96)
149 3egn_A RNA-binding protein 40; 99.8 1.8E-20 6.3E-25 110.0 5.4 84 21-105 40-129 (143)
150 1sjr_A Polypyrimidine tract-bi 99.8 2.4E-19 8.3E-24 107.0 9.9 81 21-105 41-123 (164)
151 3pgw_S U1-70K; protein-RNA com 99.8 2.2E-19 7.6E-24 121.7 11.0 82 24-105 100-181 (437)
152 2e5g_A U6 snRNA-specific termi 99.8 3E-19 1E-23 98.0 9.5 77 23-105 5-81 (94)
153 2j8a_A Histone-lysine N-methyl 99.8 2.3E-19 8E-24 102.7 9.1 78 27-104 3-94 (136)
154 3md3_A Nuclear and cytoplasmic 99.8 3.1E-19 1E-23 106.1 10.1 78 27-105 1-78 (166)
155 3zzy_A Polypyrimidine tract-bi 99.8 6.5E-19 2.2E-23 101.7 10.9 80 21-105 23-105 (130)
156 2hgm_A HNRPF protein, heteroge 99.8 7E-20 2.4E-24 105.5 6.9 82 21-105 37-120 (126)
157 1l3k_A Heterogeneous nuclear r 99.8 1.1E-18 3.7E-23 106.4 12.4 81 24-105 102-182 (196)
158 4f02_A Polyadenylate-binding p 99.8 6.4E-19 2.2E-23 109.3 11.4 79 25-105 102-180 (213)
159 1b7f_A Protein (SXL-lethal pro 99.8 8.8E-19 3E-23 104.5 11.7 82 22-103 85-168 (168)
160 2hgn_A Heterogeneous nuclear r 99.8 2E-20 6.8E-25 109.5 3.9 82 21-105 41-122 (139)
161 3nmr_A Cugbp ELAV-like family 99.8 1.1E-18 3.8E-23 104.6 11.2 80 24-104 93-175 (175)
162 2cjk_A Nuclear polyadenylated 99.8 1.6E-19 5.4E-24 107.7 7.3 80 25-105 86-165 (167)
163 2e5i_A Heterogeneous nuclear r 99.8 2.2E-18 7.7E-23 98.9 11.5 76 24-105 23-101 (124)
164 1fxl_A Paraneoplastic encephal 99.8 1.4E-18 4.9E-23 103.3 11.0 81 23-103 85-167 (167)
165 1x5p_A Negative elongation fac 99.8 3.9E-18 1.3E-22 94.0 11.6 76 22-105 11-86 (97)
166 2qfj_A FBP-interacting repress 99.8 7.8E-19 2.7E-23 108.5 9.4 81 24-104 26-106 (216)
167 3beg_B Splicing factor, argini 99.8 3.8E-19 1.3E-23 101.0 7.1 74 24-104 14-92 (115)
168 3tyt_A Heterogeneous nuclear r 99.8 1.4E-18 4.7E-23 107.5 10.0 75 25-104 3-78 (205)
169 3d2w_A TAR DNA-binding protein 99.8 1.2E-18 4.2E-23 94.8 8.4 76 21-105 6-83 (89)
170 2diu_A KIAA0430 protein; struc 99.8 1.4E-18 4.7E-23 94.6 8.4 70 26-105 9-83 (96)
171 3smz_A Protein raver-1, ribonu 99.8 5.3E-18 1.8E-22 108.9 12.4 83 22-105 180-263 (284)
172 2voo_A Lupus LA protein; RNA-b 99.8 4.8E-18 1.7E-22 104.2 11.4 77 26-104 109-185 (193)
173 2cq2_A Hypothetical protein LO 99.8 1.2E-18 4.1E-23 98.5 8.0 77 22-104 21-104 (114)
174 3nmr_A Cugbp ELAV-like family 99.8 3.2E-18 1.1E-22 102.5 10.0 80 25-104 2-86 (175)
175 3pgw_A U1-A; protein-RNA compl 99.8 6.2E-18 2.1E-22 108.4 11.2 81 22-105 5-89 (282)
176 2dnl_A Cytoplasmic polyadenyla 99.8 2.8E-18 9.4E-23 97.2 8.5 65 23-88 5-72 (114)
177 1fje_B Nucleolin RBD12, protei 99.8 4.8E-18 1.6E-22 102.1 9.6 78 23-105 96-173 (175)
178 2hzc_A Splicing factor U2AF 65 99.8 4.4E-18 1.5E-22 91.9 8.4 72 24-102 4-86 (87)
179 3smz_A Protein raver-1, ribonu 99.8 2.2E-17 7.4E-22 106.0 12.5 82 24-105 93-174 (284)
180 2cjk_A Nuclear polyadenylated 99.8 3.4E-18 1.2E-22 101.9 8.0 79 25-105 2-80 (167)
181 2bz2_A Negative elongation fac 99.8 6E-18 2E-22 96.9 8.5 77 21-105 34-110 (121)
182 2pe8_A Splicing factor 45; RRM 99.8 1.9E-17 6.6E-22 92.6 10.4 82 24-105 6-93 (105)
183 2ghp_A U4/U6 snRNA-associated 99.8 1.3E-17 4.6E-22 107.4 10.7 83 22-105 206-290 (292)
184 1wf0_A TDP-43, TAR DNA-binding 99.7 2.8E-18 9.6E-23 93.0 6.3 74 25-105 4-77 (88)
185 2adc_A Polypyrimidine tract-bi 99.7 1.1E-17 3.7E-22 104.8 9.2 80 21-105 29-109 (229)
186 3pgw_A U1-A; protein-RNA compl 99.7 3.1E-17 1.1E-21 105.2 11.4 78 23-105 204-282 (282)
187 3u1l_A PRE-mRNA-splicing facto 99.7 6.5E-18 2.2E-22 106.4 8.0 78 23-106 131-229 (240)
188 1qm9_A Polypyrimidine tract-bi 99.7 1.2E-17 4.1E-22 102.2 6.6 76 25-105 2-78 (198)
189 3sde_A Paraspeckle component 1 99.7 1E-16 3.5E-21 102.1 10.2 78 22-105 18-95 (261)
190 1fje_B Nucleolin RBD12, protei 99.7 4.2E-18 1.4E-22 102.3 3.6 83 21-105 8-90 (175)
191 2adc_A Polypyrimidine tract-bi 99.7 2.9E-16 1E-20 98.3 10.5 76 25-105 150-227 (229)
192 2ghp_A U4/U6 snRNA-associated 99.7 1.4E-16 4.7E-21 102.6 9.1 80 25-105 116-196 (292)
193 2dit_A HIV TAT specific factor 99.7 5.5E-16 1.9E-20 87.5 10.3 80 22-105 11-101 (112)
194 1qm9_A Polypyrimidine tract-bi 99.7 1.3E-16 4.6E-21 97.5 8.3 76 25-105 119-196 (198)
195 3sde_A Paraspeckle component 1 99.7 6.1E-16 2.1E-20 98.5 10.5 80 25-105 95-178 (261)
196 3tyt_A Heterogeneous nuclear r 99.7 2.2E-16 7.4E-21 97.7 7.6 77 25-103 122-204 (205)
197 1jmt_A Splicing factor U2AF 35 99.7 7E-17 2.4E-21 90.2 4.5 72 31-103 20-103 (104)
198 2g4b_A Splicing factor U2AF 65 99.7 7.7E-16 2.6E-20 92.0 8.8 74 25-105 3-87 (172)
199 2yh0_A Splicing factor U2AF 65 99.6 1.1E-15 3.7E-20 93.2 8.8 74 25-105 3-87 (198)
200 3v4m_A Splicing factor U2AF 65 99.6 7.3E-16 2.5E-20 86.2 7.4 81 25-105 4-96 (105)
201 3ue2_A Poly(U)-binding-splicin 99.6 4.5E-15 1.5E-19 84.5 9.2 80 25-104 19-107 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 9.8E-14 3.4E-18 76.8 9.8 73 26-105 10-89 (100)
203 3tht_A Alkylated DNA repair pr 99.5 3.8E-14 1.3E-18 93.4 9.1 77 22-104 14-97 (345)
204 3s6e_A RNA-binding protein 39; 99.5 2.2E-13 7.6E-18 77.0 9.4 77 24-104 5-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 1.2E-12 4.1E-17 70.6 8.2 73 25-106 6-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.4 2.2E-12 7.4E-17 73.4 7.8 77 21-103 13-93 (121)
207 3dxb_A Thioredoxin N-terminall 99.2 5.3E-11 1.8E-15 74.0 7.6 66 39-104 142-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.1 1.1E-10 3.7E-15 63.3 4.9 73 24-105 13-94 (95)
209 2l9w_A U4/U6 snRNA-associated- 99.0 6E-09 2E-13 57.8 9.4 73 23-101 18-95 (117)
210 1whv_A Poly(A)-specific ribonu 98.4 3.1E-06 1.1E-10 45.9 7.6 58 22-88 12-69 (100)
211 2dhx_A Poly (ADP-ribose) polym 98.2 6.3E-05 2.2E-09 41.2 9.5 71 23-102 5-80 (104)
212 1wey_A Calcipressin 1; structu 98.1 1.5E-05 5.2E-10 43.8 6.8 74 25-104 4-82 (104)
213 3ctr_A Poly(A)-specific ribonu 98.1 5.6E-06 1.9E-10 45.1 5.0 55 26-89 6-60 (101)
214 1uw4_A UPF3X; nonsense mediate 98.1 4.6E-05 1.6E-09 41.0 8.3 67 27-93 2-70 (91)
215 1wwh_A Nucleoporin 35, nucleop 98.0 6.9E-05 2.4E-09 42.2 7.6 72 23-102 21-93 (119)
216 2l08_A Regulator of nonsense t 97.7 0.00019 6.4E-09 39.0 6.4 78 26-103 9-93 (97)
217 3p3d_A Nucleoporin 53; structu 97.4 0.00046 1.6E-08 39.5 5.6 79 24-104 5-97 (132)
218 3pq1_A Poly(A) RNA polymerase; 97.1 0.00048 1.6E-08 47.2 3.6 56 25-86 52-107 (464)
219 2i2y_A Fusion protein consists 96.6 0.00085 2.9E-08 38.9 1.9 41 64-105 9-50 (150)
220 2kn4_A Immunoglobulin G-bindin 96.2 0.0085 2.9E-07 34.7 4.6 33 56-90 3-35 (158)
221 3d45_A Poly(A)-specific ribonu 95.8 0.061 2.1E-06 37.4 8.0 56 25-89 439-494 (507)
222 2g0c_A ATP-dependent RNA helic 48.5 8.9 0.0003 19.0 1.5 68 28-104 2-75 (76)
223 4bby_A Alkyldihydroxyacetoneph 41.8 60 0.002 23.3 5.3 55 33-88 350-408 (658)
224 3lpe_A Putative transcription 34.8 44 0.0015 17.4 2.9 26 67-92 49-74 (92)
225 4e8u_A Putative uncharacterize 33.9 76 0.0026 18.9 7.7 55 29-86 15-81 (172)
226 1fme_A FSD-EY peptide; beta-BE 28.6 29 0.00098 13.5 1.1 12 39-50 14-25 (28)
227 3h7h_B Transcription elongatio 28.3 44 0.0015 18.0 2.3 25 67-91 50-74 (106)
228 3uzu_A Ribosomal RNA small sub 28.3 38 0.0013 21.5 2.3 34 27-60 115-148 (279)
229 3fut_A Dimethyladenosine trans 27.7 66 0.0023 20.3 3.3 32 26-58 110-141 (271)
230 2dzr_A General transcription f 27.0 79 0.0027 16.9 3.1 32 25-56 40-79 (99)
231 2d9b_A Gtfii-I, general transc 26.3 86 0.0029 17.1 3.3 31 26-56 51-89 (109)
232 3ts2_A Protein LIN-28 homolog 25.8 12 0.00042 21.5 -0.3 27 42-76 3-29 (148)
233 2okq_A Hypothetical protein YB 25.4 1E+02 0.0035 17.7 6.7 47 41-87 48-109 (141)
234 1xn9_A 30S ribosomal protein S 25.3 87 0.003 16.8 5.6 49 36-85 28-81 (101)
235 2g1d_A 30S ribosomal protein S 25.1 50 0.0017 17.6 2.1 47 36-83 29-80 (98)
236 2lfv_A Protein DAMX; cell divi 30.4 16 0.00054 19.8 0.0 67 22-92 21-88 (106)
237 2exu_A Transcription initiatio 23.6 79 0.0027 19.2 3.0 26 67-92 148-173 (200)
238 3fjv_A Uncharacterized novel p 23.0 1.3E+02 0.0046 18.2 4.5 55 39-100 66-127 (194)
239 1ytr_A Bacteriocin plantaricin 22.3 47 0.0016 12.6 1.4 12 40-51 14-25 (26)
240 1ywx_A 30S ribosomal protein S 22.0 1E+02 0.0036 16.5 5.7 47 36-83 28-79 (102)
241 2v94_A RPS24, 30S ribosomal pr 21.8 1.1E+02 0.0037 16.6 5.7 48 36-84 37-89 (107)
242 4aj5_1 SKA3, spindle and kinet 21.5 32 0.0011 18.5 0.8 12 40-51 90-101 (101)
243 1qyr_A KSGA, high level kasuga 21.3 1.2E+02 0.0042 18.7 3.6 24 27-50 91-114 (252)
244 3tqs_A Ribosomal RNA small sub 21.1 33 0.0011 21.4 1.0 31 29-59 99-129 (255)
245 3p8b_B Transcription antitermi 20.5 1.2E+02 0.004 17.2 3.2 26 67-92 42-67 (152)
246 1wvf_A 4-cresol dehydrogenase 20.4 1.2E+02 0.004 21.0 3.7 42 42-84 217-260 (520)
247 3ftd_A Dimethyladenosine trans 20.3 96 0.0033 19.1 3.0 28 27-54 96-123 (249)
248 3pm9_A Putative oxidoreductase 20.1 2.2E+02 0.0076 19.6 5.0 54 34-88 194-251 (476)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=125.11 Aligned_cols=81 Identities=35% Similarity=0.619 Sum_probs=78.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
..++|||+|||.++++++|+++|++||.|..+.+.+++.++.++|||||+|.+.++|++|++.||+..++|++|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 46789999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred c
Q 034000 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 7
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.92 E-value=9.2e-24 Score=119.36 Aligned_cols=82 Identities=26% Similarity=0.284 Sum_probs=78.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35679999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cc
Q 034000 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 3
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.91 E-value=3e-23 Score=112.45 Aligned_cols=82 Identities=39% Similarity=0.683 Sum_probs=76.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999999999878999999999999999999999999999999999999998
Q ss_pred cc
Q 034000 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
++
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 75
No 4
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.91 E-value=2.2e-23 Score=112.55 Aligned_cols=82 Identities=37% Similarity=0.613 Sum_probs=77.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
....++|||+|||.++++++|+++|++||.|..+.++.++.++..+|+|||+|.+.++|++|++.|++..+.|++|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999987899999999999999999999999999999999999999
Q ss_pred cc
Q 034000 103 AH 104 (106)
Q Consensus 103 ~~ 104 (106)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 5
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.91 E-value=4.6e-23 Score=110.77 Aligned_cols=79 Identities=39% Similarity=0.698 Sum_probs=76.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~~ 105 (106)
.+|||+|||.++++++|+++|+.||.|..+.+..++.++..+|+|||+|.+.++|++|+..|++..++|++|+|.++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 5899999999999999999999999999999999988899999999999999999999999999999999999999875
No 6
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=112.95 Aligned_cols=84 Identities=26% Similarity=0.603 Sum_probs=78.8
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..+. ++..+|+|||+|.+.++|++|+..|++..+.|++|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 445567899999999999999999999999999999999988 8899999999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++++
T Consensus 91 ~~a~~ 95 (100)
T 2do4_A 91 AISNS 95 (100)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99875
No 7
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=7e-23 Score=112.62 Aligned_cols=85 Identities=34% Similarity=0.529 Sum_probs=79.9
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
..+...++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|+|||+|.+.++|++|+..|++..+.|++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44556789999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
++++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99875
No 8
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.90 E-value=3.1e-24 Score=117.56 Aligned_cols=80 Identities=23% Similarity=0.447 Sum_probs=74.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccC-ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHh-CCeeeCCeEEEEEec
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM-DGLLLDGRNIRVNYA 103 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l-~~~~i~~~~i~v~~~ 103 (106)
+++|||+|||.++++++|+++|++|| .|..+.+++++.++.++|||||+|.+.++|++|++.+ ++..++|++|+|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 7999999999888999999999999999999999877 456799999999998
Q ss_pred cc
Q 034000 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
++
T Consensus 81 ~~ 82 (91)
T 2lxi_A 81 DP 82 (91)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 9
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=7.3e-23 Score=114.68 Aligned_cols=84 Identities=27% Similarity=0.461 Sum_probs=79.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..+..++..+|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34457899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++.+
T Consensus 99 ~a~~ 102 (106)
T 1p27_B 99 WCFV 102 (106)
T ss_dssp ESEE
T ss_pred eecC
Confidence 9865
No 10
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.90 E-value=1.1e-22 Score=115.49 Aligned_cols=85 Identities=25% Similarity=0.455 Sum_probs=79.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34446789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 100 ~~a~~ 104 (115)
T 2cpz_A 100 QLKRS 104 (115)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99865
No 11
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1e-22 Score=111.81 Aligned_cols=84 Identities=23% Similarity=0.432 Sum_probs=78.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|+|||+|.+.++|++|++.|++..+.|++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34456789999999999999999999999999999999998878889999999999999999999999999999999999
Q ss_pred Eecc
Q 034000 101 NYAH 104 (106)
Q Consensus 101 ~~~~ 104 (106)
++|+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 12
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.90 E-value=4.6e-23 Score=117.54 Aligned_cols=84 Identities=30% Similarity=0.479 Sum_probs=78.0
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..++|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999998878899999999999999999999999999999999999
Q ss_pred Eecc
Q 034000 101 NYAH 104 (106)
Q Consensus 101 ~~~~ 104 (106)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9975
No 13
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=1.1e-22 Score=113.42 Aligned_cols=84 Identities=31% Similarity=0.489 Sum_probs=79.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45567999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 91 ~a~~ 94 (103)
T 2cq0_A 91 WAKP 94 (103)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9865
No 14
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.90 E-value=9.7e-23 Score=112.99 Aligned_cols=85 Identities=28% Similarity=0.435 Sum_probs=79.2
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeE--------EEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCe
Q 034000 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--------VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL 91 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~ 91 (106)
...+...++|||+|||.++++++|+++|+.||.|.. +.+..++.++..+|+|||+|.+.++|++|++.|++.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345556889999999999999999999999999999 999999888999999999999999999999999999
Q ss_pred eeCCeEEEEEecc
Q 034000 92 LLDGRNIRVNYAH 104 (106)
Q Consensus 92 ~i~~~~i~v~~~~ 104 (106)
.+.|++|+|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999974
No 15
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.90 E-value=1.9e-22 Score=114.54 Aligned_cols=86 Identities=38% Similarity=0.660 Sum_probs=80.3
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034000 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34555789999999999999999999999999999999999987899999999999999999999999999999999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|.++++
T Consensus 89 V~~a~~ 94 (115)
T 2dgo_A 89 TNWATR 94 (115)
T ss_dssp EEESSC
T ss_pred EEEccC
Confidence 999865
No 16
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.90 E-value=8.7e-23 Score=113.10 Aligned_cols=84 Identities=29% Similarity=0.474 Sum_probs=78.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..+..++..+|||||+|.+.++|++|+..|++..+.|++|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 84 ~a~~ 87 (99)
T 1whw_A 84 PSTI 87 (99)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 9865
No 17
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.90 E-value=2.2e-23 Score=114.98 Aligned_cols=83 Identities=22% Similarity=0.430 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCc--eeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCe----eeCCe
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGE--IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL----LLDGR 96 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~----~i~~~ 96 (106)
...-.+|||+|||+++++++|+++|++||. +..+.+++++.++.++|||||+|.+.++|++|++.||+. .++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345678999999999999999999999995 678999999889999999999999999999999999986 59999
Q ss_pred EEEEEeccc
Q 034000 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~i~v~~~~~ 105 (106)
+|.|+||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 18
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.90 E-value=2.9e-23 Score=120.26 Aligned_cols=87 Identities=33% Similarity=0.532 Sum_probs=80.9
Q ss_pred cccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034000 19 LLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 19 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i 98 (106)
....+...++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|++|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34555678899999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred EEEeccc
Q 034000 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
+|+++.+
T Consensus 119 ~V~~a~~ 125 (129)
T 2kxn_B 119 RVDFSIT 125 (129)
T ss_dssp EESCCSS
T ss_pred EEEEecC
Confidence 9999865
No 19
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.90 E-value=1.2e-22 Score=114.33 Aligned_cols=86 Identities=28% Similarity=0.646 Sum_probs=80.1
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034000 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~ 99 (106)
.......++|||+|||..+++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..+++..+.|++|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34455678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 100 V~~a~~ 105 (108)
T 2jrs_A 100 VGHVTE 105 (108)
T ss_dssp EECSCS
T ss_pred EEEccc
Confidence 999865
No 20
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=9.1e-23 Score=114.11 Aligned_cols=85 Identities=44% Similarity=0.647 Sum_probs=79.9
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..+..++..+|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 45556889999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++.+
T Consensus 90 ~~a~~ 94 (105)
T 1x5u_A 90 NKASA 94 (105)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 99865
No 21
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.89 E-value=1.3e-22 Score=111.92 Aligned_cols=80 Identities=26% Similarity=0.623 Sum_probs=76.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~~ 105 (106)
.++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..++|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57899999999999999999999999999999999987889999999999999999999999999999999999999865
No 22
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=111.52 Aligned_cols=82 Identities=30% Similarity=0.662 Sum_probs=77.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|+|||+|.+.++|++|+..|++..+.|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999999878889999999999999999999999999999999999998
Q ss_pred cc
Q 034000 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 23
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=5.3e-23 Score=114.75 Aligned_cols=85 Identities=32% Similarity=0.509 Sum_probs=79.6
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..+..++..+|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 44556799999999999999999999999999999999998878899999999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++++
T Consensus 88 ~~a~~ 92 (103)
T 2dnm_A 88 QVARY 92 (103)
T ss_dssp EECSS
T ss_pred EECCc
Confidence 99864
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=2.1e-22 Score=114.53 Aligned_cols=79 Identities=37% Similarity=0.698 Sum_probs=72.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
...+|||+|||.++++++|+++|+.||.|..+.++.+. +.++|||||+|.+.++|++|+..|++..+.|++|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999885 4478999999999999999999999999999999999875
Q ss_pred c
Q 034000 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 82 ~ 82 (115)
T 4f25_A 82 S 82 (115)
T ss_dssp C
T ss_pred C
Confidence 4
No 25
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.89 E-value=1.6e-23 Score=114.36 Aligned_cols=79 Identities=32% Similarity=0.502 Sum_probs=72.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccC--ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
.+|||+|||.++++++|+++|+.|| .|..+.++.++.++.++|||||+|.+.++|++|++.|++..++|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999998899999999999999999999999999999999999999886
Q ss_pred c
Q 034000 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 5
No 26
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=2.3e-22 Score=111.45 Aligned_cols=83 Identities=29% Similarity=0.560 Sum_probs=77.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|+. +++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999998788899999999999999999998 99999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++.+
T Consensus 85 ~a~~ 88 (99)
T 2dgs_A 85 RAEP 88 (99)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9865
No 27
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=112.30 Aligned_cols=84 Identities=33% Similarity=0.591 Sum_probs=78.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCcee-EEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeE---
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEII-EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN--- 97 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~--- 97 (106)
.....++|||+|||.++++++|+++|+.||.|. .+.+..++.++..+|||||+|.+.++|++|+..|++..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 344678999999999999999999999999999 9999999888999999999999999999999999999999999
Q ss_pred -EEEEeccc
Q 034000 98 -IRVNYAHK 105 (106)
Q Consensus 98 -i~v~~~~~ 105 (106)
|+|.++++
T Consensus 85 ~l~v~~a~~ 93 (99)
T 2div_A 85 RFKLNYATY 93 (99)
T ss_dssp ECCEEETTC
T ss_pred eEEEeecCC
Confidence 99999875
No 28
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.89 E-value=6.3e-22 Score=107.26 Aligned_cols=82 Identities=37% Similarity=0.650 Sum_probs=75.8
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||.++++++|+++|++||.|..+.++.++.++..+|+|||+|.+.++|++|+. +++..+.|++|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 455678899999999999999999999999999999999998889999999999999999999997 5888999999999
Q ss_pred Eec
Q 034000 101 NYA 103 (106)
Q Consensus 101 ~~~ 103 (106)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 976
No 29
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.89 E-value=2.4e-22 Score=113.26 Aligned_cols=85 Identities=25% Similarity=0.440 Sum_probs=79.3
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||..+++++|+++|+.||.|..+.+..+..++..+|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++.+
T Consensus 101 ~~a~~ 105 (110)
T 1oo0_B 101 DWCFV 105 (110)
T ss_dssp EESEE
T ss_pred EEccc
Confidence 99864
No 30
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.3e-22 Score=112.98 Aligned_cols=84 Identities=36% Similarity=0.585 Sum_probs=78.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|++|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999988788899999999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 88 ~a~~ 91 (102)
T 2cqb_A 88 LAKP 91 (102)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 9865
No 31
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.89 E-value=3.5e-22 Score=109.83 Aligned_cols=84 Identities=29% Similarity=0.509 Sum_probs=77.6
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||..+++++|+++|+.||.|..+.+..++ ++..+|+|||+|.+.++|++|+..|++..+.|++|+|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 344567899999999999999999999999999999999987 4889999999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
++++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99864
No 32
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.89 E-value=3.7e-23 Score=115.00 Aligned_cols=82 Identities=22% Similarity=0.367 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCC-e
Q 034000 24 NSRTKLFIGGLSY------DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG-R 96 (106)
Q Consensus 24 ~~~~~l~v~~lp~------~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~-~ 96 (106)
...++|||+|||. ++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|+..||+..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467999999999 99999999999999999999999999889999999999999999999999999999999 9
Q ss_pred EEEEEeccc
Q 034000 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~i~v~~~~~ 105 (106)
.|+|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999854
No 33
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.89 E-value=4.8e-22 Score=116.18 Aligned_cols=86 Identities=34% Similarity=0.580 Sum_probs=80.2
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034000 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|++|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34455678999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|.++++
T Consensus 116 v~~a~~ 121 (139)
T 1u6f_A 116 VALAAS 121 (139)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 999865
No 34
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=3.4e-22 Score=112.71 Aligned_cols=85 Identities=33% Similarity=0.575 Sum_probs=79.3
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhC------CeeeC
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD------GLLLD 94 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~------~~~i~ 94 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..++ +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345567899999999999999999999999999999999998888899999999999999999999999 99999
Q ss_pred CeEEEEEeccc
Q 034000 95 GRNIRVNYAHK 105 (106)
Q Consensus 95 ~~~i~v~~~~~ 105 (106)
|++|+|.++.+
T Consensus 90 g~~l~v~~a~~ 100 (111)
T 1x4h_A 90 GRQLKVDLAVT 100 (111)
T ss_dssp SCEEEEECCCC
T ss_pred CEEEEEEECCC
Confidence 99999999864
No 35
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.5e-22 Score=111.57 Aligned_cols=82 Identities=40% Similarity=0.673 Sum_probs=77.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEE-EEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
...++|||+|||.++++++|+++|+.||.|..+ .+..++.++..+|||||+|.+.++|++|+..|++..+.|++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 9999877899999999999999999999999999999999999999
Q ss_pred ccc
Q 034000 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+.+
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 864
No 36
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.3e-22 Score=112.92 Aligned_cols=84 Identities=49% Similarity=0.756 Sum_probs=78.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|++|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999988788899999999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 88 ~a~~ 91 (102)
T 1x5s_A 88 QAGK 91 (102)
T ss_dssp EEEC
T ss_pred ECCC
Confidence 9865
No 37
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=2.4e-22 Score=112.68 Aligned_cols=85 Identities=24% Similarity=0.525 Sum_probs=79.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeec-CCCCCeeeEEEEEeCCHHHHHHHHHHh-CCeeeCCeEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICD-RVTGQSRGYGFVKFASEAAAGEAIKEM-DGLLLDGRNI 98 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~g~~fv~f~~~~~a~~al~~l-~~~~i~~~~i 98 (106)
......++|||+|||..+++++|+++|+.||.|..+.+..+ ..++..+|||||+|.+.++|++|+..| ++..+.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34556789999999999999999999999999999999988 678889999999999999999999999 9999999999
Q ss_pred EEEeccc
Q 034000 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
+|+++++
T Consensus 90 ~v~~a~~ 96 (107)
T 2cph_A 90 VLEWADS 96 (107)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9999875
No 38
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=2.7e-22 Score=110.89 Aligned_cols=82 Identities=28% Similarity=0.524 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCC---CCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRV---TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..+.. ++..+|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999988765 4478999999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 83 ~~a~~ 87 (98)
T 2cpf_A 83 RISER 87 (98)
T ss_dssp ECSSC
T ss_pred EEccC
Confidence 99865
No 39
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.89 E-value=2.9e-22 Score=119.38 Aligned_cols=81 Identities=28% Similarity=0.512 Sum_probs=76.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccC--ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
..++|||+|||+++++++|+++|+.|| .|..+.++.++.++..+|||||+|.+.++|++|+..|++..++|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999988999999999999999999999999999999999999999
Q ss_pred ccc
Q 034000 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 854
No 40
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=5.7e-22 Score=110.55 Aligned_cols=83 Identities=29% Similarity=0.539 Sum_probs=77.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..+ ++..+|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 44557889999999999999999999999999999999887 7889999999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++++
T Consensus 88 ~~a~~ 92 (103)
T 2d9p_A 88 ALAQR 92 (103)
T ss_dssp EECSS
T ss_pred EEecc
Confidence 99865
No 41
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.89 E-value=7.2e-22 Score=110.77 Aligned_cols=84 Identities=26% Similarity=0.483 Sum_probs=78.4
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034000 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~ 99 (106)
.......++|||+|||..+++++|+++|+.||.|..+.+..+. ++..+|+|||+|.+.++|++|+..|++..+.|+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3445568999999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred EEecc
Q 034000 100 VNYAH 104 (106)
Q Consensus 100 v~~~~ 104 (106)
|+++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 42
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.89 E-value=3.9e-22 Score=108.41 Aligned_cols=80 Identities=21% Similarity=0.605 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.+..+..++..+|+|||+|.+.++|++|+ .+++..+.|++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3578999999999999999999999999999999999888999999999999999999999 899999999999999987
Q ss_pred c
Q 034000 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 43
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=9.2e-22 Score=109.73 Aligned_cols=83 Identities=25% Similarity=0.467 Sum_probs=77.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
.+....++|||+|||.++++++|+++|+.|| |..+.++.+..++..+|||||+|.+.++|++|+ .|++..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3445678999999999999999999999997 999999999888999999999999999999999 79999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++.+
T Consensus 88 ~~a~~ 92 (103)
T 2dng_A 88 DIAEG 92 (103)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99865
No 44
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.88 E-value=8.5e-22 Score=110.13 Aligned_cols=83 Identities=30% Similarity=0.430 Sum_probs=77.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCC---eEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG---RNI 98 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~---~~i 98 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..++ ++..+|||||+|.+.++|++|+..|++..+.+ +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 33457899999999999999999999999999999999987 78899999999999999999999999999988 999
Q ss_pred EEEeccc
Q 034000 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
+|.++++
T Consensus 90 ~V~~a~~ 96 (105)
T 2dnh_A 90 VVKFADT 96 (105)
T ss_dssp EEEESCS
T ss_pred EEEECcc
Confidence 9999865
No 45
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=6.6e-22 Score=112.45 Aligned_cols=85 Identities=45% Similarity=0.697 Sum_probs=78.6
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034000 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..+++ .+.|++|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34555689999999999999999999999999999999999988899999999999999999999999998 89999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++.+
T Consensus 90 V~~a~~ 95 (116)
T 2cqd_A 90 VNLAYL 95 (116)
T ss_dssp EEESTT
T ss_pred EEEccc
Confidence 999854
No 46
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.88 E-value=4.1e-22 Score=108.05 Aligned_cols=81 Identities=28% Similarity=0.508 Sum_probs=75.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCC-eeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ-SRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
..++|||+|||.++++++|+++|+.||.|..+.+..+..++. .+|+|||+|.+.++|++|+..|++..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467899999999999999999999999999999988876555 7899999999999999999999999999999999998
Q ss_pred cc
Q 034000 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 47
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.88 E-value=3.4e-22 Score=113.82 Aligned_cols=83 Identities=49% Similarity=0.796 Sum_probs=77.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
+....++|||+|||.++++++|+++|+.||.|..+.+..+. ++..+|||||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999988 88899999999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 82 ~a~~ 85 (116)
T 2fy1_A 82 QAKK 85 (116)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9864
No 48
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.7e-22 Score=114.63 Aligned_cols=81 Identities=26% Similarity=0.377 Sum_probs=76.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..+..++..+|||||+|.+.++|++|+ .+++..+.|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34689999999999999999999999999999999999878889999999999999999999 89999999999999998
Q ss_pred cc
Q 034000 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
++
T Consensus 102 ~~ 103 (114)
T 2cq4_A 102 QA 103 (114)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 49
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=4.3e-22 Score=110.11 Aligned_cols=84 Identities=14% Similarity=0.178 Sum_probs=77.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|+..|++..+.|++|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34457899999999999999999999999999888888887788999999999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++..
T Consensus 91 ~a~~ 94 (98)
T 2cqp_A 91 LGSG 94 (98)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 9853
No 50
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.88 E-value=2e-21 Score=111.65 Aligned_cols=83 Identities=27% Similarity=0.488 Sum_probs=78.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|..+.+..+. ++..+|+|||+|.+.++|++|+..+++..+.|++|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999988 88899999999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
+|.+
T Consensus 110 ~a~~ 113 (124)
T 2kt5_A 110 LVAS 113 (124)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9865
No 51
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=2.5e-21 Score=109.67 Aligned_cols=83 Identities=28% Similarity=0.498 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..+. ++..+|||||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 44557899999999999999999999999999999999987 68899999999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 90 ~a~~ 93 (114)
T 2do0_A 90 MDER 93 (114)
T ss_dssp ECSC
T ss_pred Eccc
Confidence 9863
No 52
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.88 E-value=3.4e-22 Score=111.95 Aligned_cols=85 Identities=29% Similarity=0.441 Sum_probs=78.8
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeee---CCeE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL---DGRN 97 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i---~~~~ 97 (106)
..+...++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|+..|++..+ .|++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3455678999999999999999999999999999999999887899999999999999999999999999987 8899
Q ss_pred EEEEeccc
Q 034000 98 IRVNYAHK 105 (106)
Q Consensus 98 i~v~~~~~ 105 (106)
|+|.++.+
T Consensus 88 l~v~~a~~ 95 (106)
T 2dgp_A 88 IQVKPADS 95 (106)
T ss_dssp CEEEECCC
T ss_pred EEEEECCc
Confidence 99999865
No 53
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=6.5e-22 Score=111.97 Aligned_cols=84 Identities=24% Similarity=0.430 Sum_probs=78.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCcee--------EEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeee
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEII--------EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i 93 (106)
.....++|||+|||.++++++|+++|+.||.|. .+.+..++.++..+|||||+|.+.++|++|+..|++..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 445678999999999999999999999999998 699999877899999999999999999999999999999
Q ss_pred CCeEEEEEeccc
Q 034000 94 DGRNIRVNYAHK 105 (106)
Q Consensus 94 ~~~~i~v~~~~~ 105 (106)
.|++|+|.++++
T Consensus 91 ~g~~l~V~~a~~ 102 (113)
T 2cpe_A 91 QGSKLKVSLARK 102 (113)
T ss_dssp TTEECEEECSSC
T ss_pred CCCEEEEEECCC
Confidence 999999999865
No 54
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.88 E-value=1.5e-21 Score=114.00 Aligned_cols=83 Identities=36% Similarity=0.607 Sum_probs=77.3
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44556899999999999999999999999999999999999878999999999999999999999999999999999999
Q ss_pred Eec
Q 034000 101 NYA 103 (106)
Q Consensus 101 ~~~ 103 (106)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 55
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=4.9e-22 Score=110.91 Aligned_cols=81 Identities=32% Similarity=0.707 Sum_probs=77.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
..++|||+|||..+++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..+++..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45789999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred c
Q 034000 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 87 ~ 87 (104)
T 1p1t_A 87 S 87 (104)
T ss_dssp C
T ss_pred C
Confidence 5
No 56
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.9e-21 Score=107.66 Aligned_cols=84 Identities=30% Similarity=0.616 Sum_probs=76.5
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034000 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.+..+.. ..+|+|||+|.+.++|++|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556689999999999999999999999999999999988763 3789999999999999999999999999999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|.++.+
T Consensus 87 v~~a~~ 92 (103)
T 2cq3_A 87 VNNATA 92 (103)
T ss_dssp EEECCS
T ss_pred EEEccc
Confidence 999865
No 57
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.1e-21 Score=108.23 Aligned_cols=80 Identities=16% Similarity=0.266 Sum_probs=73.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034000 23 ANSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i 98 (106)
....++|||+|||.++++++|+ ++|++||.|..+.++.++.+ +|||||+|.+.++|++|+..||+..+.|++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4456899999999999999999 99999999999999888644 7899999999999999999999999999999
Q ss_pred EEEeccc
Q 034000 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
+|+++++
T Consensus 83 ~V~~a~~ 89 (96)
T 2dgx_A 83 LVSLATG 89 (96)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9999865
No 58
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=5.2e-22 Score=111.89 Aligned_cols=88 Identities=28% Similarity=0.567 Sum_probs=77.8
Q ss_pred ccccccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCC
Q 034000 16 FTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG 95 (106)
Q Consensus 16 ~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~ 95 (106)
...........++|||+|||.++++++|+++|+.||.|..+.+..+. +..+|||||+|.+.++|++|+..|++..+.|
T Consensus 19 ~S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g 96 (109)
T 2err_A 19 SHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEG 96 (109)
T ss_dssp ---CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETT
T ss_pred CCCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34445566678999999999999999999999999999999998875 3478999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 034000 96 RNIRVNYAHK 105 (106)
Q Consensus 96 ~~i~v~~~~~ 105 (106)
++|+|+++++
T Consensus 97 ~~l~V~~a~~ 106 (109)
T 2err_A 97 RKIEVNNATA 106 (109)
T ss_dssp EECEEEECCC
T ss_pred EEEEEEECCC
Confidence 9999999875
No 59
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.7e-21 Score=107.75 Aligned_cols=83 Identities=29% Similarity=0.517 Sum_probs=75.8
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..+... .+|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 45556899999999999999999999999999999999888533 5789999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++++
T Consensus 88 ~~a~~ 92 (103)
T 2cqi_A 88 NWATT 92 (103)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99864
No 60
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.88 E-value=4e-22 Score=109.61 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||.++++++|+++|++||.|..+.++.++.++..+|+|||+|.+.++|++|+..|++..+.|++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999988888888878899999999999999999999999999999999999988
Q ss_pred cc
Q 034000 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 61
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1e-21 Score=109.70 Aligned_cols=82 Identities=23% Similarity=0.429 Sum_probs=76.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCC-CCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVT-GQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
+....++|||+|||.++++++|+++|+.|| |..+.++.++.+ +..+|||||+|.+.++|++|+ .+++..+.|++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 344678999999999999999999999999 999999998876 889999999999999999999 89999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++.+
T Consensus 89 ~~a~~ 93 (104)
T 1wi8_A 89 DVADQ 93 (104)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99864
No 62
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.88 E-value=1.2e-21 Score=107.05 Aligned_cols=82 Identities=30% Similarity=0.578 Sum_probs=76.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..+ ++..+|+|||+|.+.++|++|+..|++..+.|++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999874 67889999999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 82 ~a~~ 85 (92)
T 2dgv_A 82 IDRN 85 (92)
T ss_dssp ECSC
T ss_pred EcCC
Confidence 9865
No 63
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=3.6e-21 Score=105.08 Aligned_cols=82 Identities=20% Similarity=0.393 Sum_probs=76.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||.++++++|+++|+.| .|..+.++.+ .++..+|+|||+|.+.++|++|+. +++..++|++|+|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 345567899999999999999999999999 9999999998 588999999999999999999999 9999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++++
T Consensus 82 ~~a~~ 86 (91)
T 2dgw_A 82 FREKS 86 (91)
T ss_dssp EEESS
T ss_pred EECCc
Confidence 99865
No 64
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.87 E-value=6.3e-22 Score=113.94 Aligned_cols=85 Identities=27% Similarity=0.456 Sum_probs=79.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.++.+..++..+|||||+|.+.++|++|+..|++..+.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34445789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++.+
T Consensus 97 ~~a~~ 101 (126)
T 3ex7_B 97 DWCFV 101 (126)
T ss_dssp EESEE
T ss_pred EEecC
Confidence 99864
No 65
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.87 E-value=2.8e-21 Score=114.96 Aligned_cols=83 Identities=28% Similarity=0.508 Sum_probs=78.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
....++|||+|||.++++++|+++|+.||.|..+.++.+..++..++||||+|.+.++|++|+..|++..+.|++|+|++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccc
Q 034000 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+.+
T Consensus 116 a~~ 118 (156)
T 1h2v_Z 116 DAG 118 (156)
T ss_dssp ESC
T ss_pred CCC
Confidence 864
No 66
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=6e-22 Score=110.58 Aligned_cols=83 Identities=33% Similarity=0.535 Sum_probs=77.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcc-cCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCee-eCCeEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQ-HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL-LDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~-i~~~~i~ 99 (106)
.....++|||+|||.++++++|+++|+. ||.|..+.+..+. ++..+|||||+|.+.++|++|+..|++.. +.|++|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4456789999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|.++.+
T Consensus 84 v~~a~~ 89 (104)
T 2dhg_A 84 LSVAIP 89 (104)
T ss_dssp CCBCCC
T ss_pred EEEccC
Confidence 999854
No 67
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=5e-22 Score=111.01 Aligned_cols=81 Identities=15% Similarity=0.272 Sum_probs=75.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|++||.|..+.++.++. +.++|||||+|.+.++|++|+. +++..++|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 344568999999999999999999999999999999999885 8899999999999999999999 89999999999999
Q ss_pred ecc
Q 034000 102 YAH 104 (106)
Q Consensus 102 ~~~ 104 (106)
++.
T Consensus 85 ~~~ 87 (103)
T 1s79_A 85 FKD 87 (103)
T ss_dssp EHH
T ss_pred Ech
Confidence 864
No 68
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.87 E-value=1.1e-21 Score=110.60 Aligned_cols=88 Identities=36% Similarity=0.567 Sum_probs=73.8
Q ss_pred cccccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCe
Q 034000 17 TRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR 96 (106)
Q Consensus 17 ~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~ 96 (106)
..........++|||+|||.++++++|+++|+.||.|..+.+..+..++..+|||||+|.+.++|++|+..+ +..++|+
T Consensus 16 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~ 94 (109)
T 2rs2_A 16 PRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK 94 (109)
T ss_dssp ----------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE
T ss_pred ccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE
Confidence 334455667899999999999999999999999999999999999878999999999999999999999975 5899999
Q ss_pred EEEEEeccc
Q 034000 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~i~v~~~~~ 105 (106)
.|.|.++.+
T Consensus 95 ~l~V~~a~~ 103 (109)
T 2rs2_A 95 TIDPKVAFP 103 (109)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 69
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.87 E-value=1.6e-22 Score=112.38 Aligned_cols=85 Identities=24% Similarity=0.391 Sum_probs=73.4
Q ss_pred cccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecC-CCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeE
Q 034000 19 LLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDR-VTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 19 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~ 97 (106)
........++|||+|||.++++++|+++|+.|| |..+.+..+. .++..+|||||+|.+.++|++|+ .+++..+.|+.
T Consensus 12 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 12 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp --------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred CcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 344556789999999999999999999999999 9999999887 57889999999999999999999 79999999999
Q ss_pred EEEEeccc
Q 034000 98 IRVNYAHK 105 (106)
Q Consensus 98 i~v~~~~~ 105 (106)
|+|+++++
T Consensus 90 l~V~~a~~ 97 (100)
T 2j76_E 90 IRVDVADQ 97 (100)
T ss_dssp CCCEECCC
T ss_pred EEEEeccC
Confidence 99999865
No 70
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=8.2e-22 Score=110.23 Aligned_cols=84 Identities=38% Similarity=0.662 Sum_probs=78.6
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+.. ++..+.|++|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 4456789999999999999999999999999999999999988899999999999999999999998 999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++.+
T Consensus 90 ~~a~~ 94 (105)
T 2dh8_A 90 KPCTP 94 (105)
T ss_dssp CCSCC
T ss_pred EEccC
Confidence 99864
No 71
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.4e-22 Score=109.47 Aligned_cols=83 Identities=27% Similarity=0.433 Sum_probs=77.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
+...++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..||+..+.|+.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 34678999999999999999999999999999999999987899999999999999999999999999999999999887
Q ss_pred ccc
Q 034000 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
++.
T Consensus 82 ~~s 84 (85)
T 1x4e_A 82 PSS 84 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 72
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8.7e-21 Score=105.70 Aligned_cols=84 Identities=29% Similarity=0.501 Sum_probs=76.9
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034000 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|+. ++..+.|++|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 3445567899999999999999999999999999999999998889999999999999999999998 57899999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|.++.+
T Consensus 87 v~~a~~ 92 (103)
T 2cqg_A 87 CKLPNS 92 (103)
T ss_dssp EECCCT
T ss_pred EEecCC
Confidence 999864
No 73
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.87 E-value=2.4e-21 Score=110.58 Aligned_cols=83 Identities=22% Similarity=0.299 Sum_probs=76.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCc---eeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGE---IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~ 97 (106)
......++|||+|||+++++++|+++|+.||. |..+.++.+.. +..+|||||+|.+.++|++|+. +++..++|+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 34456789999999999999999999999998 89999999874 8899999999999999999999 9999999999
Q ss_pred EEEEeccc
Q 034000 98 IRVNYAHK 105 (106)
Q Consensus 98 i~v~~~~~ 105 (106)
|+|.++.+
T Consensus 90 i~V~~a~~ 97 (118)
T 2db1_A 90 IEVFKSHR 97 (118)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99998754
No 74
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=6.1e-21 Score=107.35 Aligned_cols=82 Identities=23% Similarity=0.451 Sum_probs=74.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..+ +..++||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 44556789999999999999999999999999999988543 446899999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 94 ~~a~~ 98 (109)
T 1x4a_A 94 EFPRS 98 (109)
T ss_dssp ECCCC
T ss_pred EEccc
Confidence 99865
No 75
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=2.4e-21 Score=115.27 Aligned_cols=84 Identities=37% Similarity=0.623 Sum_probs=78.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|+.|+..|++..+.|++|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 33457899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 146 ~a~~ 149 (158)
T 2kn4_A 146 MARY 149 (158)
T ss_dssp EECC
T ss_pred ECCC
Confidence 9865
No 76
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.87 E-value=3.1e-22 Score=116.75 Aligned_cols=86 Identities=36% Similarity=0.601 Sum_probs=79.7
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034000 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|++|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34445678999999999999999999999999999999999887889999999999999999999999999999999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 121 V~~a~~ 126 (135)
T 2lea_A 121 VQMARY 126 (135)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999875
No 77
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.87 E-value=5.5e-21 Score=114.70 Aligned_cols=83 Identities=25% Similarity=0.451 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
....++|||+|||..+++++|+++|+.||.|..+.+..+..++..+|||||+|.+.++|++|+..|++..|.|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccc
Q 034000 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+.+
T Consensus 149 a~~ 151 (165)
T 1rk8_A 149 CFV 151 (165)
T ss_dssp SEE
T ss_pred ecC
Confidence 864
No 78
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.87 E-value=2.6e-21 Score=111.12 Aligned_cols=80 Identities=25% Similarity=0.650 Sum_probs=76.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+ .+++..++|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999878999999999999999999999 799999999999999986
Q ss_pred c
Q 034000 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 5
No 79
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.87 E-value=4.6e-22 Score=105.05 Aligned_cols=75 Identities=29% Similarity=0.533 Sum_probs=71.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 28 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
+|||+|||.++++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|++|+. +++..++|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999988788899999999999999999998 8999999999999875
No 80
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=9.5e-21 Score=107.30 Aligned_cols=84 Identities=21% Similarity=0.478 Sum_probs=77.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeee-------
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL------- 93 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i------- 93 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..+. ++..+|||||+|.+.++|++|+..||+..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 344567899999999999999999999999999999999998 889999999999999999999999999999
Q ss_pred -CCeEEEEEeccc
Q 034000 94 -DGRNIRVNYAHK 105 (106)
Q Consensus 94 -~~~~i~v~~~~~ 105 (106)
.++.|.|.++++
T Consensus 99 ~~~~~l~v~~a~p 111 (114)
T 1x5o_A 99 APTEPLLCKFSGP 111 (114)
T ss_dssp CCSSCBEEEECCC
T ss_pred CCCCceeEEccCC
Confidence 578899999875
No 81
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.86 E-value=2.6e-22 Score=116.43 Aligned_cols=85 Identities=22% Similarity=0.427 Sum_probs=78.3
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeE--EEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCe----ee
Q 034000 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL----LL 93 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~----~i 93 (106)
.......++|||+|||+++++++|+++|+.||.|.. +.++.++.++..+|||||+|.+. +|.+|+..|++. .+
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 344456789999999999999999999999999966 99999988999999999999999 999999999999 99
Q ss_pred CCeEEEEEeccc
Q 034000 94 DGRNIRVNYAHK 105 (106)
Q Consensus 94 ~~~~i~v~~~~~ 105 (106)
.|++|+|.++++
T Consensus 96 ~gr~l~V~~a~~ 107 (131)
T 2m2b_A 96 DGKTINVEFAKG 107 (131)
T ss_dssp GGCCCCCEECCC
T ss_pred CCEEEEEEECCC
Confidence 999999999864
No 82
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=3.7e-21 Score=108.71 Aligned_cols=83 Identities=19% Similarity=0.359 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHH---HHhcccCceeEEEEeecCCCC---CeeeEEEEEeCCHHHHHHHHHHhCCeeeCCe
Q 034000 23 ANSRTKLFIGGLSYDTNETVLK---DAFGQHGEIIEVKVICDRVTG---QSRGYGFVKFASEAAAGEAIKEMDGLLLDGR 96 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~---~~f~~~g~i~~~~~~~~~~~~---~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~ 96 (106)
....++|||+|||.++++++|+ ++|++||.|..+.+..+..++ ..+|||||+|.+.++|++|+..||+..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457899999999999999999 999999999999998876533 4569999999999999999999999999999
Q ss_pred EEEEEeccc
Q 034000 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~i~v~~~~~ 105 (106)
+|+|.++.+
T Consensus 92 ~l~V~~a~~ 100 (111)
T 2cpi_A 92 TLKASLGTT 100 (111)
T ss_dssp EEEEESCCC
T ss_pred EEEEEeccc
Confidence 999999865
No 83
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2e-21 Score=109.25 Aligned_cols=82 Identities=26% Similarity=0.444 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCc-eeEEEEe-ecCCCCCeeeEEEEEeCCHHHHHHHHHHhC--CeeeCCeEEE
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVI-CDRVTGQSRGYGFVKFASEAAAGEAIKEMD--GLLLDGRNIR 99 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-i~~~~~~-~~~~~~~~~g~~fv~f~~~~~a~~al~~l~--~~~i~~~~i~ 99 (106)
...++|||+|||.++++++|+++|+.||. |..+.++ .+..++..+|||||+|.+.++|+.|+..|+ +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999988 677677889999999999999999999996 5899999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|.++++
T Consensus 86 V~~a~~ 91 (109)
T 2dis_A 86 VDWAEP 91 (109)
T ss_dssp EEESCS
T ss_pred EEEcCC
Confidence 999875
No 84
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.2e-21 Score=108.41 Aligned_cols=77 Identities=16% Similarity=0.271 Sum_probs=70.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCC--eeeCCeEEEE
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LLLDGRNIRV 100 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~--~~i~~~~i~v 100 (106)
+...++|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|+.|+..+++ ..+.|++|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 446789999999999999999999999999999999865 48999999999999999998864 7899999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.+|++
T Consensus 87 ~~A~~ 91 (105)
T 1sjq_A 87 QFSNH 91 (105)
T ss_dssp CCCSS
T ss_pred EEcCC
Confidence 99865
No 85
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.86 E-value=2.8e-21 Score=112.77 Aligned_cols=83 Identities=22% Similarity=0.290 Sum_probs=76.4
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCc---eeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGE---IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~ 97 (106)
......++|||+|||+++++++|+++|+.||. |..+.++.++. ++++|||||+|.+.++|++|+. +++..++|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34456789999999999999999999999999 88999999885 8899999999999999999999 9999999999
Q ss_pred EEEEeccc
Q 034000 98 IRVNYAHK 105 (106)
Q Consensus 98 i~v~~~~~ 105 (106)
|+|.++.+
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99998754
No 86
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-21 Score=112.74 Aligned_cols=84 Identities=23% Similarity=0.323 Sum_probs=75.6
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
.+....++|||+|||+++++++|+++|+.||.|..+.++.+..++..+|||||+|.+.++|++|+. +++..++|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 445567899999999999999999999999999886566666689999999999999999999999 9999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++.+
T Consensus 99 ~~a~~ 103 (124)
T 1wel_A 99 HPITK 103 (124)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99864
No 87
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.1e-21 Score=109.50 Aligned_cols=82 Identities=18% Similarity=0.209 Sum_probs=76.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCce-eEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEI-IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
.+...++|||+|||+++++++|+++|+.||.| ..+.++.+. ++..+|||||+|.+.++|++|+.. ++..+.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 44567899999999999999999999999999 889999988 899999999999999999999996 999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++.+
T Consensus 89 ~~a~~ 93 (114)
T 2cpy_A 89 HVVTL 93 (114)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99864
No 88
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.2e-21 Score=108.71 Aligned_cols=80 Identities=36% Similarity=0.599 Sum_probs=75.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|+.. ++..+.|++|+|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 458999999999999999999999999999999999987899999999999999999999997 9999999999999986
Q ss_pred c
Q 034000 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 105 ~ 105 (116)
T 1x4b_A 105 A 105 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 89
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=6.5e-22 Score=104.86 Aligned_cols=76 Identities=39% Similarity=0.672 Sum_probs=72.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
++|||+|||.++++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|++|+..++ ..++|++|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999988788999999999999999999999988 9999999999986
No 90
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.86 E-value=3e-22 Score=109.17 Aligned_cols=78 Identities=36% Similarity=0.676 Sum_probs=73.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~~ 105 (106)
++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.+ |+.|+..+++..++|++|+|++|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999878899999999999999 9999999999999999999999864
No 91
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.9e-21 Score=107.06 Aligned_cols=83 Identities=22% Similarity=0.330 Sum_probs=75.3
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeE-EEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~ 99 (106)
......++|||+|||+++++++|+++|+.||.|.. +.+..+ .++..+|||||+|.+.++|++|+.. ++..++|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 44456789999999999999999999999999987 788777 5888999999999999999999997 99999999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|.++.+
T Consensus 88 v~~~~~ 93 (104)
T 1wg5_A 88 IFKSSR 93 (104)
T ss_dssp EEEECT
T ss_pred EEECCH
Confidence 998764
No 92
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=7.9e-21 Score=105.25 Aligned_cols=79 Identities=23% Similarity=0.263 Sum_probs=70.0
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCee--eCCeEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL--LDGRNI 98 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~--i~~~~i 98 (106)
......++|||+|||.++++++|+++|++||.|..+.+++. +|+|||+|.+.++|.+|+..+++.. +.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34446789999999999999999999999999999988753 4799999999999999999998764 889999
Q ss_pred EEEeccc
Q 034000 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
+|++|+.
T Consensus 90 ~V~~S~~ 96 (100)
T 3r27_A 90 FVNYSTS 96 (100)
T ss_dssp EEEECSC
T ss_pred EEEeccc
Confidence 9999875
No 93
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.85 E-value=3.8e-21 Score=107.68 Aligned_cols=81 Identities=26% Similarity=0.404 Sum_probs=73.5
Q ss_pred CCCCCceEEEcCCCCCC------CHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCC
Q 034000 22 DANSRTKLFIGGLSYDT------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG 95 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~ 95 (106)
.....++|||+|||..+ ++++|+++|++||.|..+.+. ..++.++|||||+|.+.++|++|+..|+|..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 33446899999999999 789999999999999999887 3478889999999999999999999999999999
Q ss_pred e-EEEEEecc
Q 034000 96 R-NIRVNYAH 104 (106)
Q Consensus 96 ~-~i~v~~~~ 104 (106)
+ +|+|.++.
T Consensus 89 ~~~l~V~~a~ 98 (105)
T 2nlw_A 89 QHTFRVNLFT 98 (105)
T ss_dssp TCEEEEECSC
T ss_pred CceEEEEEcc
Confidence 8 99999885
No 94
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.85 E-value=5.4e-21 Score=110.38 Aligned_cols=81 Identities=14% Similarity=0.370 Sum_probs=72.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~ 97 (106)
.....++|||+|||+.+++++|+ ++|++||.|..+.+.. ++..+|||||+|.+.++|+.|+..|||..+.|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34457899999999999998876 6999999999887743 5678999999999999999999999999999999
Q ss_pred EEEEeccc
Q 034000 98 IRVNYAHK 105 (106)
Q Consensus 98 i~v~~~~~ 105 (106)
|+|.||++
T Consensus 102 l~V~~a~~ 109 (127)
T 2a3j_A 102 LVITFSET 109 (127)
T ss_dssp CEEEECCC
T ss_pred EEEEEccC
Confidence 99999865
No 95
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=104.62 Aligned_cols=80 Identities=31% Similarity=0.496 Sum_probs=72.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.| .++.+ .++..+|||||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45568999999999999999999999999987 45555 478889999999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 87 ~a~~ 90 (101)
T 2fc9_A 87 LQGP 90 (101)
T ss_dssp ECSS
T ss_pred EcCC
Confidence 9865
No 96
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.85 E-value=8.7e-21 Score=106.76 Aligned_cols=80 Identities=30% Similarity=0.557 Sum_probs=70.8
Q ss_pred ccccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeE
Q 034000 18 RLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 18 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~ 97 (106)
.........++|||+|||.++++++|+++|+.||.|..+.+. +|||||+|.+.++|++|+..|++..+.|+.
T Consensus 23 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 23 HRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp -----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred cccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 344556678999999999999999999999999999999886 479999999999999999999999999999
Q ss_pred EEEEeccc
Q 034000 98 IRVNYAHK 105 (106)
Q Consensus 98 i~v~~~~~ 105 (106)
|+|.++++
T Consensus 95 l~V~~a~~ 102 (108)
T 2jvo_A 95 LEVVYSKL 102 (108)
T ss_dssp CEEESCSC
T ss_pred EEEEEecC
Confidence 99999875
No 97
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.85 E-value=1.8e-20 Score=103.61 Aligned_cols=82 Identities=18% Similarity=0.402 Sum_probs=70.3
Q ss_pred ccccccCCCCCceEEEcCCCC-CCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeC
Q 034000 16 FTRLLSDANSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 16 ~~~~~~~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~ 94 (106)
...........++|||+|||. ++++++|+++|+.||.|..+.+. +|||||+|.+.++|++|+..+++..+.
T Consensus 12 ~~~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 12 SGLVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp -------CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred cccccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 334445566789999999998 99999999999999999999883 579999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 034000 95 GRNIRVNYAHK 105 (106)
Q Consensus 95 ~~~i~v~~~~~ 105 (106)
|++|+|+++++
T Consensus 84 g~~l~V~~a~~ 94 (97)
T 2xnq_A 84 GKKLILEVSSS 94 (97)
T ss_dssp TEECEEEECCC
T ss_pred CEEEEEEecCC
Confidence 99999999875
No 98
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.4e-20 Score=103.80 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=69.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHh--CCeeeCCeEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM--DGLLLDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l--~~~~i~~~~i~ 99 (106)
.....++|||+|||+++++++|+++|++||.|..+.++.+ +|+|||+|.+.++|++|+..+ ++..+.|++|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3345789999999999999999999999999999988754 589999999999999999976 56789999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|.++++
T Consensus 85 V~~a~~ 90 (101)
T 2cq1_A 85 IQYSNH 90 (101)
T ss_dssp EEECSC
T ss_pred EEEcCc
Confidence 999865
No 99
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.1e-20 Score=105.09 Aligned_cols=77 Identities=23% Similarity=0.357 Sum_probs=71.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCC-----e
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG-----R 96 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~-----~ 96 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..+ |||||+|.+.++|++|+..||+..+.| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456789999999999999999999999999999999765 799999999999999999999999999 9
Q ss_pred EEEEEeccc
Q 034000 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~i~v~~~~~ 105 (106)
.|+|+++.+
T Consensus 84 ~i~V~~a~~ 92 (108)
T 1x4c_A 84 YIRVKVDGP 92 (108)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999999865
No 100
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.7e-20 Score=110.14 Aligned_cols=84 Identities=37% Similarity=0.673 Sum_probs=79.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|++..++|++|+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
||++
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9975
No 101
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.85 E-value=2.3e-20 Score=115.83 Aligned_cols=83 Identities=28% Similarity=0.552 Sum_probs=76.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
....++|||+|||.++++++|+++|++||.|..+.++++..++.++|||||+|.+.++|++|+..+++..+.|+.+++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34567999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred ccc
Q 034000 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+..
T Consensus 92 ~~~ 94 (213)
T 4f02_A 92 SQR 94 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 753
No 102
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=5.2e-21 Score=106.58 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=68.8
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCC--eeeCCeEEEE
Q 034000 24 NSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LLLDGRNIRV 100 (106)
Q Consensus 24 ~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~--~~i~~~~i~v 100 (106)
...++|||+|||+ ++++++|+++|++||.|..+.++.++ ++|||+|.+.++|+.|+..|++ ..+.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3578999999999 99999999999999999999997653 6999999999999999998885 4599999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.+|++
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99874
No 103
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.85 E-value=4.8e-21 Score=120.35 Aligned_cols=81 Identities=32% Similarity=0.505 Sum_probs=76.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccC--ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
..++|||+|||+++++++|+++|+.|| .|..+.++.++.++..+|||||+|.+.++|++||..|++..|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999988999999999999999999999999999999999999998
Q ss_pred ccc
Q 034000 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 753
No 104
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=101.24 Aligned_cols=78 Identities=31% Similarity=0.563 Sum_probs=71.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHh-CCeeeCCeEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM-DGLLLDGRNIR 99 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l-~~~~i~~~~i~ 99 (106)
......++|||+|||.++++++|+++|++||.|..+.+..+ +|+|||+|.+.++|++|+..| ++..+.|++|+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34456789999999999999999999999999999999764 579999999999999999988 99999999999
Q ss_pred EEecc
Q 034000 100 VNYAH 104 (106)
Q Consensus 100 v~~~~ 104 (106)
|+|++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 105
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.85 E-value=7.7e-21 Score=107.41 Aligned_cols=81 Identities=21% Similarity=0.223 Sum_probs=71.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccC-ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~ 99 (106)
..+...++|||+|||+++++++|+++|+.|| .|..+.+... ..+|||||+|.+.++|++|+..||+..+.|++|+
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3455678999999999999999999999999 8999888532 3678999999999999999999999999999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++..
T Consensus 99 V~~a~~ 104 (111)
T 2jvr_A 99 VERDDN 104 (111)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 999853
No 106
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.85 E-value=1.2e-20 Score=107.09 Aligned_cols=81 Identities=23% Similarity=0.413 Sum_probs=73.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
++...++|||+|||..+++++|+++|+.||.|..+.+..+ +..+|+|||+|.+.++|++|+..|||..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4456789999999999999999999999999999999865 3447899999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++.+
T Consensus 81 ~a~~ 84 (115)
T 3lqv_A 81 YYNA 84 (115)
T ss_dssp ECCH
T ss_pred EecC
Confidence 9864
No 107
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2e-20 Score=103.26 Aligned_cols=78 Identities=29% Similarity=0.553 Sum_probs=71.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeC--CeEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD--GRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~--~~~i~ 99 (106)
.....++|||+|||.++++++|+++|++||.|..+.+..+ ++||||+|.+.++|++|+..|++..+. |++|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3445689999999999999999999999999999988643 579999999999999999999999999 99999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 87 V~~a~~ 92 (97)
T 1why_A 87 VDFAKS 92 (97)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999875
No 108
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.7e-21 Score=105.59 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=74.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
..+...++|||+|||+++++++|+++|+.||. ..+.++.++ ++.++|||||+|.+.++|++|+. +++..++++.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 34456789999999999999999999999995 499999988 89999999999999999999996 7999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++.+
T Consensus 87 ~~~~~ 91 (102)
T 1wez_A 87 FLNST 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 98754
No 109
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.4e-20 Score=102.64 Aligned_cols=82 Identities=35% Similarity=0.627 Sum_probs=73.9
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||.++++++|+++|+.|+ .+.++.+..++..+|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3455678999999999999999999999874 5667777778889999999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 87 ~~a~~ 91 (102)
T 2fc8_A 87 DWAKP 91 (102)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99875
No 110
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.8e-20 Score=102.15 Aligned_cols=76 Identities=33% Similarity=0.616 Sum_probs=70.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+. ++||||+|.+.++|++|+..+++..+.|++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34567899999999999999999999999999999886 4699999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 76 ~a~~ 79 (90)
T 2dnq_A 76 ASKN 79 (90)
T ss_dssp CSSC
T ss_pred ECCC
Confidence 9864
No 111
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=105.45 Aligned_cols=79 Identities=22% Similarity=0.621 Sum_probs=72.9
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||..+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 93 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 93 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34556889999999999999999999999999999999765 579999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++++
T Consensus 94 ~~a~~ 98 (109)
T 1x4g_A 94 YWGKE 98 (109)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99875
No 112
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=107.61 Aligned_cols=78 Identities=15% Similarity=0.266 Sum_probs=70.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCC--eeeCCeEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LLLDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~--~~i~~~~i~ 99 (106)
.....++|||+|||+++++++|+++|++||.|..+.++.+ +|+|||+|.+.++|++|+..+++ ..+.|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3445789999999999999999999999999999999865 58999999999999999998874 679999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|.+|++
T Consensus 101 V~~a~~ 106 (119)
T 2ad9_A 101 IQFSNH 106 (119)
T ss_dssp EEECSS
T ss_pred EEEccC
Confidence 999865
No 113
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.84 E-value=5.4e-20 Score=109.52 Aligned_cols=80 Identities=36% Similarity=0.658 Sum_probs=76.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~~ 105 (106)
.++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|+|||+|.+.++|+.|+..+++..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999988899999999999999999999999999999999999999864
No 114
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=106.10 Aligned_cols=79 Identities=24% Similarity=0.380 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
....+|||+|||+++++++|+++|+.| .|..+.++.++ ++..+|+|||+|.+.++|++|+ .+++..++|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 345799999999999999999999999 89999999887 4889999999999999999999 58999999999999887
Q ss_pred cc
Q 034000 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 115
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.84 E-value=6e-21 Score=105.23 Aligned_cols=81 Identities=26% Similarity=0.501 Sum_probs=72.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034000 23 ANSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i 98 (106)
....++|||+|||.++++++|+ ++|++||.|..+.+.. ++..+|+|||+|.+.++|+.|+..|++..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4467899999999999999999 9999999999998863 45567899999999999999999999999999999
Q ss_pred EEEecccC
Q 034000 99 RVNYAHKD 106 (106)
Q Consensus 99 ~v~~~~~~ 106 (106)
+|.+++++
T Consensus 82 ~v~~a~~~ 89 (97)
T 1nu4_A 82 RIQYAKTD 89 (97)
T ss_dssp EEEECSSC
T ss_pred EEEEccCC
Confidence 99998753
No 116
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=6.6e-20 Score=100.25 Aligned_cols=77 Identities=27% Similarity=0.494 Sum_probs=70.7
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+.+ +||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 3455678999999999999999999999999999998863 39999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 77 ~~a~~ 81 (92)
T 2dgt_A 77 QLSTS 81 (92)
T ss_dssp EESSC
T ss_pred EEccC
Confidence 99865
No 117
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.4e-20 Score=104.49 Aligned_cols=79 Identities=24% Similarity=0.412 Sum_probs=71.9
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
..+...++|||+|||.++++++|+++|+.||.|..+.+.. .+|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3444578999999999999999999999999999998873 3589999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.|+++
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 99875
No 118
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.84 E-value=4.2e-20 Score=110.27 Aligned_cols=81 Identities=33% Similarity=0.531 Sum_probs=77.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
+.++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|+.|+..+++..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46789999999999999999999999999999999998889999999999999999999999999999999999999986
Q ss_pred c
Q 034000 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 82 ~ 82 (168)
T 1b7f_A 82 P 82 (168)
T ss_dssp C
T ss_pred C
Confidence 5
No 119
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.84 E-value=2.9e-21 Score=108.45 Aligned_cols=83 Identities=14% Similarity=0.244 Sum_probs=76.0
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCc---eeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGE---IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~ 97 (106)
......++|||+|||+++++++|+++|+.||. |..+.++.+.. +..+|+|||+|.+.++|++|+. +++..++|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34557889999999999999999999999888 89999998875 8899999999999999999999 9999999999
Q ss_pred EEEEeccc
Q 034000 98 IRVNYAHK 105 (106)
Q Consensus 98 i~v~~~~~ 105 (106)
|+|.++.+
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99998764
No 120
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.8e-21 Score=109.07 Aligned_cols=84 Identities=21% Similarity=0.356 Sum_probs=71.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..+..++..+|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34467899999999999999999999999998433222221267788999999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 101 ~a~~ 104 (115)
T 2cpx_A 101 FGKN 104 (115)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9864
No 121
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=4.8e-20 Score=99.37 Aligned_cols=74 Identities=16% Similarity=0.294 Sum_probs=68.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
...-|||+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.+.++|.+|++.||+..++|+.|+|.+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356799999999999999999999999999999865 36899999999999999999999999999999999875
No 122
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.83 E-value=3.2e-21 Score=101.75 Aligned_cols=75 Identities=28% Similarity=0.506 Sum_probs=70.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 28 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
+|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+.. ++..+.|++|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999887889999999999999999999994 889999999999875
No 123
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=3e-20 Score=102.29 Aligned_cols=79 Identities=30% Similarity=0.522 Sum_probs=71.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|..+ ..++..+|||||+|.+.++|++|+..+++..+.|++|+|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44467899999999999999999999999988766 2367789999999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++.+
T Consensus 87 ~a~~ 90 (96)
T 1fjc_A 87 YTGE 90 (96)
T ss_dssp ECSS
T ss_pred EcCC
Confidence 9864
No 124
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6.5e-20 Score=99.89 Aligned_cols=76 Identities=30% Similarity=0.550 Sum_probs=70.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+.+ +||||+|.+.++|++|+..|++..+.|++|+|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 455678999999999999999999999999999998863 389999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 77 ~a~~ 80 (90)
T 2dnp_A 77 LSTK 80 (90)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9865
No 125
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.9e-20 Score=102.39 Aligned_cols=78 Identities=31% Similarity=0.571 Sum_probs=71.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|++|+..|++..+.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3446789999999999999999999999999999988754 4799999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 85 ~a~~ 88 (99)
T 2cpj_A 85 FACH 88 (99)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 9865
No 126
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-21 Score=109.04 Aligned_cols=82 Identities=26% Similarity=0.415 Sum_probs=72.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|.. .++.+..++..+|||||+|.+.++|++|+. +++..+.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3445789999999999999999999999998877 555555567788999999999999999999 99999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 91 ~a~~ 94 (101)
T 1fj7_A 91 KPKG 94 (101)
T ss_dssp CCSC
T ss_pred EcCC
Confidence 9864
No 127
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=102.45 Aligned_cols=79 Identities=25% Similarity=0.436 Sum_probs=70.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|. +.++.+ ..+|||||+|.+.++|++|+..|++..+.|++|+|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445578999999999999999999999999986 555543 356899999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 90 ~a~~ 93 (97)
T 2e5j_A 90 LARQ 93 (97)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 9875
No 128
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.83 E-value=9.1e-20 Score=109.22 Aligned_cols=82 Identities=28% Similarity=0.513 Sum_probs=77.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
....++|||+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|++|+..|++..++|++|.|++
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34578999999999999999999999999999999999987899999999999999999999999999999999999999
Q ss_pred cc
Q 034000 103 AH 104 (106)
Q Consensus 103 ~~ 104 (106)
|.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 129
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.83 E-value=6.4e-20 Score=103.34 Aligned_cols=76 Identities=25% Similarity=0.524 Sum_probs=69.6
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 22 DANSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
+....++|||+|||.+ +++++|+++|++||.|..+.+ .++||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3345689999999999 999999999999999999988 3579999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 95 ~~a~~ 99 (110)
T 1wf1_A 95 NMAGE 99 (110)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 99863
No 130
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.83 E-value=8.9e-21 Score=101.52 Aligned_cols=73 Identities=27% Similarity=0.452 Sum_probs=66.8
Q ss_pred CceEEEcCCCCCC------CHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCe-EE
Q 034000 26 RTKLFIGGLSYDT------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR-NI 98 (106)
Q Consensus 26 ~~~l~v~~lp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~-~i 98 (106)
.++|||+|||..+ ++++|+++|++||.|..+.+. +.++.++|||||+|.+.++|++|+..|||..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999887 34788899999999999999999999999999999 88
Q ss_pred EE
Q 034000 99 RV 100 (106)
Q Consensus 99 ~v 100 (106)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 131
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.9e-20 Score=103.05 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=68.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCC--eeeCCeEEEE
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LLLDGRNIRV 100 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~--~~i~~~~i~v 100 (106)
....++|||+|||.++++++|+++|++||.|..+.++.+ +|+|||+|.+.++|++|+..|++ ..+.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345689999999999999999999999999999988653 57999999999999999998865 4599999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 86 ~~a~~ 90 (104)
T 1wex_A 86 NYSTS 90 (104)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99864
No 132
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=105.58 Aligned_cols=75 Identities=16% Similarity=0.183 Sum_probs=69.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
..++|||+|||.++++++|+++|++||.|..+.+.. .+++|||+|.+.++|+.|+..||+..+.|+.|.|+|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999998764 35799999999999999999999999999999999986
Q ss_pred c
Q 034000 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 133
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.4e-19 Score=99.20 Aligned_cols=77 Identities=34% Similarity=0.559 Sum_probs=69.7
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccc--CceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQH--GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i 98 (106)
......++|||+|||.++++++|+++|+.| |.|..+.+. +|||||+|.+.++|++|+..|++..+.|++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344467899999999999999999999999 889888763 4699999999999999999999999999999
Q ss_pred EEEeccc
Q 034000 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
+|.++++
T Consensus 82 ~v~~a~~ 88 (99)
T 2cpd_A 82 EVTLAKP 88 (99)
T ss_dssp EEECCCC
T ss_pred EEEECCC
Confidence 9999865
No 134
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=1.2e-19 Score=101.11 Aligned_cols=75 Identities=32% Similarity=0.581 Sum_probs=69.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
....++|||+|||.++++++|+++|+.||.|..+.+. ++||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456899999999999999999999999999999885 34999999999999999999999999999999999
Q ss_pred ccc
Q 034000 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+++
T Consensus 80 a~~ 82 (103)
T 2dgu_A 80 AKP 82 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 135
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.83 E-value=1.9e-20 Score=104.14 Aligned_cols=78 Identities=31% Similarity=0.622 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..+. ++..+|||||+|.+.++|++|+. ++..+.|++|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 346899999999999999999999999999999999998 89999999999999999999998 899999999999887
Q ss_pred c
Q 034000 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
.
T Consensus 84 ~ 84 (102)
T 2xs2_A 84 I 84 (102)
T ss_dssp E
T ss_pred C
Confidence 4
No 136
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.83 E-value=4.1e-20 Score=112.11 Aligned_cols=82 Identities=27% Similarity=0.494 Sum_probs=76.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
....++|||+|||..+++++|+++|+.||.|..+.+..+. ++..+|+|||+|.+.++|++|+..+++..+.|+.|+|++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999988 888999999999999999999999999999999999999
Q ss_pred ccc
Q 034000 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
|..
T Consensus 164 a~~ 166 (177)
T 2f3j_A 164 VAS 166 (177)
T ss_dssp ESS
T ss_pred ecC
Confidence 864
No 137
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.82 E-value=9.2e-20 Score=98.97 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=69.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
..++|||+|||.++++++|+++|++| .|..+.+. ..+|+|||+|.+.++|++|+..+++..+.|++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 99988884 357899999999999999999999999999999999986
Q ss_pred cC
Q 034000 105 KD 106 (106)
Q Consensus 105 ~~ 106 (106)
.+
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 138
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=103.91 Aligned_cols=74 Identities=26% Similarity=0.513 Sum_probs=69.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~~ 105 (106)
++|||+|||.++++++|+++|++||.|..+.+..+ .+|+|||+|.+.++|++|+..|++..+.|++|+|+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 47999999999999999999999999999999776 568999999999999999999999999999999999864
No 139
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=6.5e-20 Score=108.39 Aligned_cols=81 Identities=31% Similarity=0.527 Sum_probs=74.0
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034000 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~ 99 (106)
.......++|||+|||+++++++|+++|+.||.|..+.+..+ .+|||||+|.+.++|+.|+..|++..+.|++|+
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344556799999999999999999999999999999999765 468999999999999999999999999999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 142 v~~a~~ 147 (150)
T 2i2y_A 142 VELSNG 147 (150)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 999875
No 140
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.82 E-value=2.1e-19 Score=109.76 Aligned_cols=83 Identities=29% Similarity=0.525 Sum_probs=78.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||..+++++|+++|++||.|..+.+..+..++..+|+|||+|.+.++|++|+..|++..++|+.|+|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56799999999999999999999999999999999999878999999999999999999999999999999999999998
Q ss_pred ccC
Q 034000 104 HKD 106 (106)
Q Consensus 104 ~~~ 106 (106)
++.
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 141
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.3e-20 Score=106.06 Aligned_cols=81 Identities=25% Similarity=0.349 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCce----eEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEI----IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i 98 (106)
.....+|||+|||+++++++|+++|+.||.| ..+.++.+. +++++|||||+|.+.++|++|+.. ++..++++.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3457899999999999999999999999875 688888885 899999999999999999999996 9999999999
Q ss_pred EEEeccc
Q 034000 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
.|..+.+
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9987753
No 142
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.82 E-value=2.5e-19 Score=110.70 Aligned_cols=82 Identities=23% Similarity=0.502 Sum_probs=77.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..+..++..+|+|||+|.+.++|.+|+..|++..++|++|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred cc
Q 034000 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 203 ~~ 204 (216)
T 2qfj_A 203 VT 204 (216)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 143
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=102.64 Aligned_cols=77 Identities=13% Similarity=0.235 Sum_probs=68.9
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhC--CeeeCCeEEE
Q 034000 23 ANSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD--GLLLDGRNIR 99 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~--~~~i~~~~i~ 99 (106)
....++|||+|||++ +++++|+++|++||.|..+.+.+. +|+|||+|.+.++|+.|+..|+ +..+.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 999999999999999999998643 5799999999999999999885 4569999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|.+|++
T Consensus 96 V~~a~~ 101 (112)
T 1x4f_A 96 VDLSEK 101 (112)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 999864
No 144
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.6e-20 Score=100.41 Aligned_cols=80 Identities=23% Similarity=0.280 Sum_probs=71.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEE-EEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
.....++|||+|||.++++++|+++|+.||.|..+ .++.++.+ +.|||+|.+.++|+.|+..|++..+.|++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 33457899999999999999999999999999999 47766533 23999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++.+
T Consensus 87 ~~a~~ 91 (96)
T 2e44_A 87 AYIPD 91 (96)
T ss_dssp EECCC
T ss_pred EEcCc
Confidence 99875
No 145
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=7.6e-22 Score=112.24 Aligned_cols=83 Identities=29% Similarity=0.464 Sum_probs=76.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeE--------EEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeC
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--------VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~ 94 (106)
....++|||+|||.++++++|+++|+.||.|.. +.+..++.++..+|||||+|.+.++|++|+..|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345788999999999999999999999999988 888888778889999999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 034000 95 GRNIRVNYAHK 105 (106)
Q Consensus 95 ~~~i~v~~~~~ 105 (106)
|++|+|.++++
T Consensus 84 g~~l~V~~a~~ 94 (116)
T 2lcw_A 84 GNPIKVSFATR 94 (116)
Confidence 99999999864
No 146
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.82 E-value=2.9e-19 Score=108.97 Aligned_cols=84 Identities=33% Similarity=0.571 Sum_probs=77.3
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
..+...++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+.. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3445678999999999999999999999999999999999988899999999999999999999985 899999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++.+
T Consensus 87 ~~~~~ 91 (196)
T 1l3k_A 87 KRAVS 91 (196)
T ss_dssp EECCC
T ss_pred ecccC
Confidence 98753
No 147
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.9e-20 Score=100.58 Aligned_cols=77 Identities=27% Similarity=0.502 Sum_probs=68.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCc-eeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCC-eeeCCeEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG-LLLDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~-~~i~~~~i~ 99 (106)
.....++|||+|||.++++++|+++|+.||. +..+.+. .+|||||+|.+.++|++|+..|++ ..+.|++|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3446789999999999999999999999999 6655552 357999999999999999999999 999999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 77 v~~a~~ 82 (93)
T 2cqh_A 77 VDYSVS 82 (93)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999865
No 148
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=6.6e-20 Score=101.04 Aligned_cols=76 Identities=20% Similarity=0.447 Sum_probs=68.5
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 22 DANSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
.....++|||+|||. .+++++|+++|++||.|..+.+. +|||||+|.+.++|+.|+..|++..+.|++|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999998 99999999999999999999883 579999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 78 ~~a~~ 82 (96)
T 2kvi_A 78 EVSSS 82 (96)
T ss_dssp EEEEC
T ss_pred EEcCc
Confidence 99864
No 149
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.81 E-value=1.8e-20 Score=109.96 Aligned_cols=84 Identities=24% Similarity=0.429 Sum_probs=72.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEE------EEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeC
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEV------KVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~------~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~ 94 (106)
......++|||+|||.++++++|+++|+.||.|..+ .+.. ..++..+|||||+|.+.++|++|+..||+..+.
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 345567899999999999999999999999988763 1111 126778999999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 034000 95 GRNIRVNYAHK 105 (106)
Q Consensus 95 ~~~i~v~~~~~ 105 (106)
|+.|.|.++++
T Consensus 119 g~~l~V~~a~~ 129 (143)
T 3egn_A 119 GKPMVVQFARS 129 (143)
T ss_dssp TEECEEEECCC
T ss_pred CcEEEEEECCC
Confidence 99999999854
No 150
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.81 E-value=2.4e-19 Score=107.00 Aligned_cols=81 Identities=15% Similarity=0.343 Sum_probs=71.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCC--eEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG--RNI 98 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~--~~i 98 (106)
..+....+|||+|||+.+++++|+++|++||.|..+.+.... .+++|||+|.+.++|+.|++.|+|..|.| ++|
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 344556779999999999999999999999999999986442 46899999999999999999999999965 999
Q ss_pred EEEeccc
Q 034000 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
+|+||++
T Consensus 117 ~V~~Ak~ 123 (164)
T 1sjr_A 117 RIDFSKL 123 (164)
T ss_dssp EEEECSS
T ss_pred EEEEecC
Confidence 9999875
No 151
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=2.2e-19 Score=121.65 Aligned_cols=82 Identities=29% Similarity=0.587 Sum_probs=77.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||..+++++|.++|+.||.|..+.|+.+..++..+|||||+|.+.++|++||..||+..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred cc
Q 034000 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 180 ~~ 181 (437)
T 3pgw_S 180 RG 181 (437)
T ss_pred CC
Confidence 64
No 152
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3e-19 Score=98.00 Aligned_cols=77 Identities=18% Similarity=0.364 Sum_probs=67.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
....++|||+|||.++++++|+++|+.||.|..+ +.+..++. ||||+|.+.++|++|+. +++..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 44443444 99999999999999999 999999999999998
Q ss_pred ccc
Q 034000 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+.+
T Consensus 79 a~~ 81 (94)
T 2e5g_A 79 REQ 81 (94)
T ss_dssp SCC
T ss_pred CCc
Confidence 753
No 153
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.3e-19 Score=102.74 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=70.3
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCC----HHH----HHHHHH--HhCCee
Q 034000 27 TKLFIGGL----SYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFAS----EAA----AGEAIK--EMDGLL 92 (106)
Q Consensus 27 ~~l~v~~l----p~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~----~~~----a~~al~--~l~~~~ 92 (106)
..|||+|| |+.+++.+|+.+|+.||+|..+.++.|+.++.++|||||+|.+ ..+ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 9999999999999999999999999999999999999999996 322 788887 789999
Q ss_pred eCCeEEEEEecc
Q 034000 93 LDGRNIRVNYAH 104 (106)
Q Consensus 93 i~~~~i~v~~~~ 104 (106)
|+|++|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998753
No 154
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.1e-19 Score=106.13 Aligned_cols=78 Identities=24% Similarity=0.544 Sum_probs=72.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~~ 105 (106)
++|||+|||.++++++|+++|+.||.|..+.+..++ ++..+|+|||+|.+.++|++|+..+++..+.|+.|.|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 589999999999999999999999999999999887 577899999999999999999999999999999999998753
No 155
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.81 E-value=6.5e-19 Score=101.70 Aligned_cols=80 Identities=15% Similarity=0.384 Sum_probs=70.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeE-EEEEeCCHHHHHHHHHHhCCeeeCC--eE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGY-GFVKFASEAAAGEAIKEMDGLLLDG--RN 97 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~al~~l~~~~i~~--~~ 97 (106)
..+...-.|||+||++.+++++|+++|++||.|..+.+.... +|+ |||+|.+.++|++|++.|||..+.| +.
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 344556778899999999999999999999999999887643 466 9999999999999999999999988 89
Q ss_pred EEEEeccc
Q 034000 98 IRVNYAHK 105 (106)
Q Consensus 98 i~v~~~~~ 105 (106)
|+|++|++
T Consensus 98 LrI~~ak~ 105 (130)
T 3zzy_A 98 LRIDFSKL 105 (130)
T ss_dssp EEEEECSC
T ss_pred EEEEecCC
Confidence 99999975
No 156
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.81 E-value=7e-20 Score=105.49 Aligned_cols=82 Identities=23% Similarity=0.342 Sum_probs=73.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCcee--EEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEII--EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~--~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i 98 (106)
......++|||+|||+++++++|+++|+.| .|. .+.++.++. +..+|||||+|.+.++|++|+.. ++..++|+.|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I 113 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYI 113 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEE
Confidence 444567899999999999999999999999 576 899988875 88999999999999999999984 7889999999
Q ss_pred EEEeccc
Q 034000 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
+|..+.+
T Consensus 114 ~V~~a~~ 120 (126)
T 2hgm_A 114 EVFKSSQ 120 (126)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9998754
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.81 E-value=1.1e-18 Score=106.44 Aligned_cols=81 Identities=31% Similarity=0.547 Sum_probs=74.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..+..++..+|+|||+|.+.++|.+|+.. ++..++|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3458999999999999999999999999999999999988899999999999999999999986 899999999999998
Q ss_pred cc
Q 034000 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 181 ~~ 182 (196)
T 1l3k_A 181 LS 182 (196)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 158
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.81 E-value=6.4e-19 Score=109.35 Aligned_cols=79 Identities=37% Similarity=0.690 Sum_probs=73.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
...+|||+|||.++++++|+++|+.||.|..+.++.+. +..+|||||+|.+.++|++|++.|||..++|++|+|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999885 4478999999999999999999999999999999999986
Q ss_pred c
Q 034000 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 180 ~ 180 (213)
T 4f02_A 180 S 180 (213)
T ss_dssp C
T ss_pred C
Confidence 4
No 159
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.81 E-value=8.8e-19 Score=104.48 Aligned_cols=82 Identities=27% Similarity=0.575 Sum_probs=76.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCC--eEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG--RNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~--~~i~ 99 (106)
.....++|||+|||..+++++|+++|++||.|..+.+..+..++..+|+|||+|.+.++|.+|+..|++..+.| ++|+
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 34467899999999999999999999999999999999998889999999999999999999999999999977 9999
Q ss_pred EEec
Q 034000 100 VNYA 103 (106)
Q Consensus 100 v~~~ 103 (106)
|.+|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 160
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.80 E-value=2e-20 Score=109.49 Aligned_cols=82 Identities=20% Similarity=0.273 Sum_probs=72.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
......++|||+|||+++++++|+++|++|| +..+.++.++ +++++|||||+|.+.++|++|+ .+++..++++.|+|
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 3445678999999999999999999999999 7799999887 4889999999999999999999 68999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++.+
T Consensus 118 ~~a~~ 122 (139)
T 2hgn_A 118 FLNST 122 (139)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 98754
No 161
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.80 E-value=1.1e-18 Score=104.58 Aligned_cols=80 Identities=33% Similarity=0.464 Sum_probs=73.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeC---CeEEEE
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD---GRNIRV 100 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~---~~~i~v 100 (106)
...++|||+|||.++++++|+++|++||.|..+.+..+. ++.++|+|||+|.+.++|.+|+..|||..+. +++|+|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 357899999999999999999999999999999999886 6889999999999999999999999998765 489999
Q ss_pred Eecc
Q 034000 101 NYAH 104 (106)
Q Consensus 101 ~~~~ 104 (106)
.||+
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.80 E-value=1.6e-19 Score=107.71 Aligned_cols=80 Identities=31% Similarity=0.569 Sum_probs=75.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|++|++ +++..++|++|+|.+|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 46789999999999999999999999999999999988789999999999999999999998 89999999999999997
Q ss_pred c
Q 034000 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 6
No 163
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=2.2e-18 Score=98.89 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=67.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeE-EEEEeCCHHHHHHHHHHhCCeeeCC--eEEEE
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGY-GFVKFASEAAAGEAIKEMDGLLLDG--RNIRV 100 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~al~~l~~~~i~~--~~i~v 100 (106)
.....|||+|||+.+++++|+++|++||.|..+.+... .|+ |||+|.+.++|+.|++.|||..|.| +.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 33455789999999999999999999999999988642 265 9999999999999999999999987 68999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.+|++
T Consensus 97 ~~Ak~ 101 (124)
T 2e5i_A 97 EYARP 101 (124)
T ss_dssp ECCSC
T ss_pred EEecC
Confidence 99875
No 164
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.79 E-value=1.4e-18 Score=103.32 Aligned_cols=81 Identities=36% Similarity=0.631 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeE--EEE
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN--IRV 100 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~--i~v 100 (106)
....++|||+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|+|..++|+. |+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 345688999999999999999999999999999999998888999999999999999999999999999999965 888
Q ss_pred Eec
Q 034000 101 NYA 103 (106)
Q Consensus 101 ~~~ 103 (106)
.||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 165
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.9e-18 Score=94.00 Aligned_cols=76 Identities=28% Similarity=0.519 Sum_probs=68.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|+ ++++++|+++|+.||.|..+.+. ..+|+|||+|.+.++|++|+..|++..+.|++|+|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 4446789999995 89999999999999999999884 245799999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++.+
T Consensus 83 ~a~~ 86 (97)
T 1x5p_A 83 IARK 86 (97)
T ss_dssp CCSS
T ss_pred ECCC
Confidence 9865
No 166
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.79 E-value=7.8e-19 Score=108.51 Aligned_cols=81 Identities=28% Similarity=0.597 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.++.+..++..+|||||+|.+.++|++|+..+++..+.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34689999999999999999999999999999999998878889999999999999999999999999999999999876
Q ss_pred c
Q 034000 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
.
T Consensus 106 ~ 106 (216)
T 2qfj_A 106 S 106 (216)
T ss_dssp S
T ss_pred C
Confidence 4
No 167
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.79 E-value=3.8e-19 Score=100.98 Aligned_cols=74 Identities=24% Similarity=0.390 Sum_probs=65.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeE-----E
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN-----I 98 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~-----i 98 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..+ |||||+|.+.++|++|+..||+..+.|++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45789999999999999999999999999999998654 79999999999999999999999999988 7
Q ss_pred EEEecc
Q 034000 99 RVNYAH 104 (106)
Q Consensus 99 ~v~~~~ 104 (106)
+|..+.
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 777654
No 168
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.78 E-value=1.4e-18 Score=107.53 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=69.8
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 25 SRTKLFIGGLS-YDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
..++|||+||| ..+++++|+++|+.||.|..+.++.+. +|+|||+|.+.++|+.|++.|||..+.|+.|+|.+|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 899999999999999999999997653 589999999999999999999999999999999998
Q ss_pred c
Q 034000 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
+
T Consensus 78 ~ 78 (205)
T 3tyt_A 78 K 78 (205)
T ss_dssp S
T ss_pred c
Confidence 5
No 169
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.78 E-value=1.2e-18 Score=94.80 Aligned_cols=76 Identities=25% Similarity=0.422 Sum_probs=61.9
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCee--eCCeEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL--LDGRNI 98 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~--i~~~~i 98 (106)
.......+|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++ +++.. +.|++|
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 34556789999999999999999999999999999998764 57899999999999984 34444 679999
Q ss_pred EEEeccc
Q 034000 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
.|.++.+
T Consensus 77 ~v~~a~~ 83 (89)
T 3d2w_A 77 HISNAEP 83 (89)
T ss_dssp EEEECC-
T ss_pred EEEEcCC
Confidence 9999864
No 170
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=94.57 Aligned_cols=70 Identities=23% Similarity=0.378 Sum_probs=62.5
Q ss_pred CceEEEcCCCCCCCHHH----HHHHhcccC-ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 26 RTKLFIGGLSYDTNETV----LKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
.+.|||+|||+.+++++ |+++|++|| +|..+ ++ |+|||.|.+.++|++|++.|+|..+.|++|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 33499999999999887 558999995 99888 23 89999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
++|+.
T Consensus 79 ~~A~~ 83 (96)
T 2diu_A 79 SFTPK 83 (96)
T ss_dssp ESSCC
T ss_pred EecCC
Confidence 99864
No 171
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.78 E-value=5.3e-18 Score=108.86 Aligned_cols=83 Identities=22% Similarity=0.355 Sum_probs=77.2
Q ss_pred CCCCCceEEEcCCCCCC-CHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 22 DANSRTKLFIGGLSYDT-NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
.....++|||+|||.++ ++++|+++|+.||.|..+.+..+. ++..+|+|||+|.+.++|.+|+..|+|..++|++|.|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 44567899999999995 999999999999999999998887 7889999999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++.+
T Consensus 259 ~~a~~ 263 (284)
T 3smz_A 259 SFCAP 263 (284)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 99875
No 172
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.78 E-value=4.8e-18 Score=104.23 Aligned_cols=77 Identities=16% Similarity=0.289 Sum_probs=71.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
.++|||+|||.++++++|+++|++||.|..+.+.++. ++..+|+|||+|.+.++|++|+..+ +..++|++|.|.+++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 5899999999999999999999999999999999886 5889999999999999999999865 558999999999865
No 173
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=98.55 Aligned_cols=77 Identities=14% Similarity=0.295 Sum_probs=68.0
Q ss_pred CCCCCceEEE--cCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeee-----C
Q 034000 22 DANSRTKLFI--GGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL-----D 94 (106)
Q Consensus 22 ~~~~~~~l~v--~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i-----~ 94 (106)
.....++||| +||+.++++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|+..|||..+ .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3445688999 77999999999999999999999987753 258999999999999999999999988 6
Q ss_pred CeEEEEEecc
Q 034000 95 GRNIRVNYAH 104 (106)
Q Consensus 95 ~~~i~v~~~~ 104 (106)
|+.|.|.++.
T Consensus 95 g~~l~v~~a~ 104 (114)
T 2cq2_A 95 KITLYLNFVE 104 (114)
T ss_dssp EEECEEEEES
T ss_pred CcEEEEEecc
Confidence 8899999875
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.77 E-value=3.2e-18 Score=102.52 Aligned_cols=80 Identities=30% Similarity=0.441 Sum_probs=72.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCC--CeeeEEEEEeCCHHHHHHHHHHhCCeeeC---CeEEE
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTG--QSRGYGFVKFASEAAAGEAIKEMDGLLLD---GRNIR 99 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~al~~l~~~~i~---~~~i~ 99 (106)
..++|||+|||.++++++|+++|++||.|..+.++.+..++ ..+|||||+|.+.++|++|+..+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999998665 78999999999999999999999998765 56777
Q ss_pred EEecc
Q 034000 100 VNYAH 104 (106)
Q Consensus 100 v~~~~ 104 (106)
+.++.
T Consensus 82 ~~~~~ 86 (175)
T 3nmr_A 82 MKPAD 86 (175)
T ss_dssp EEECG
T ss_pred Ecccc
Confidence 77654
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.77 E-value=6.2e-18 Score=108.45 Aligned_cols=81 Identities=26% Similarity=0.498 Sum_probs=73.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~ 97 (106)
.....++|||+|||.++++++|+ ++|+.||.|..+.+.. ++..+|||||+|.+.++|++|+..+++..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34568899999999999999977 8999999999998865 5678899999999999999999999999999999
Q ss_pred EEEEeccc
Q 034000 98 IRVNYAHK 105 (106)
Q Consensus 98 i~v~~~~~ 105 (106)
|+|.+++.
T Consensus 82 l~v~~a~~ 89 (282)
T 3pgw_A 82 MRIQYAKT 89 (282)
T ss_pred EEEEEecc
Confidence 99999864
No 176
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=97.24 Aligned_cols=65 Identities=25% Similarity=0.479 Sum_probs=58.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCC---CCeeeEEEEEeCCHHHHHHHHHHh
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVT---GQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
....++|||+|||.++++++|+++|++||.|. +.++.+..+ +..+|||||+|.+.++|++|+..+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 34578999999999999999999999999999 777777655 688999999999999999999988
No 177
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.76 E-value=4.8e-18 Score=102.06 Aligned_cols=78 Identities=31% Similarity=0.527 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~ 102 (106)
....++|||+|||.++++++|+++|+.||.|..+ ..++..+|+|||+|.+.++|.+|+..|++..++|++|+|.+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3456899999999999999999999999988766 34678899999999999999999999999999999999999
Q ss_pred ccc
Q 034000 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+.+
T Consensus 171 a~~ 173 (175)
T 1fje_B 171 TGE 173 (175)
T ss_dssp CSS
T ss_pred cCC
Confidence 875
No 178
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.76 E-value=4.4e-18 Score=91.86 Aligned_cols=72 Identities=22% Similarity=0.630 Sum_probs=65.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccc----C-------ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCee
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQH----G-------EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
...++|||+|||.++++++|+++|+.| | .|..+.+..+ +|||||+|.+.++|++|+ .+++..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 356899999999999999999999999 8 8999888654 589999999999999999 899999
Q ss_pred eCCeEEEEEe
Q 034000 93 LDGRNIRVNY 102 (106)
Q Consensus 93 i~~~~i~v~~ 102 (106)
+.|++|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 179
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.76 E-value=2.2e-17 Score=106.01 Aligned_cols=82 Identities=21% Similarity=0.391 Sum_probs=77.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|+..+++..++|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35679999999999999999999999999999999998888999999999999999999999999999999999999998
Q ss_pred cc
Q 034000 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 173 ~~ 174 (284)
T 3smz_A 173 DA 174 (284)
T ss_dssp CG
T ss_pred CC
Confidence 64
No 180
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.76 E-value=3.4e-18 Score=101.90 Aligned_cols=79 Identities=38% Similarity=0.722 Sum_probs=72.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|++|+.. +..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 367899999999999999999999999999999999988899999999999999999999984 678999999988764
Q ss_pred c
Q 034000 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 3
No 181
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.75 E-value=6e-18 Score=96.88 Aligned_cols=77 Identities=27% Similarity=0.511 Sum_probs=68.4
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
..+...++|||+|+ ++++++|+++|+.||.|..+.+. ..+|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999995 69999999999999999999885 24579999999999999999999999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++.+
T Consensus 106 ~~a~~ 110 (121)
T 2bz2_A 106 NIARK 110 (121)
T ss_dssp EECCS
T ss_pred EEeCC
Confidence 99865
No 182
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.75 E-value=1.9e-17 Score=92.61 Aligned_cols=82 Identities=12% Similarity=0.178 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHHHhcccCceeEEEEeecCCC-CCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeE
Q 034000 24 NSRTKLFIGGLSY-----DTNETVLKDAFGQHGEIIEVKVICDRVT-GQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 24 ~~~~~l~v~~lp~-----~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~ 97 (106)
...++|+|.|+.. +-++++|++.|++||.|..+.+..++.+ +..+|++||+|.+.++|++|+..|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3567899999963 2368999999999999999999887543 567899999999999999999999999999999
Q ss_pred EEEEeccc
Q 034000 98 IRVNYAHK 105 (106)
Q Consensus 98 i~v~~~~~ 105 (106)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999854
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.75 E-value=1.3e-17 Score=107.35 Aligned_cols=83 Identities=24% Similarity=0.414 Sum_probs=74.8
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHhcccCceeEEEEeecCC-CCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034000 22 DANSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRV-TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~ 99 (106)
.....++|||+|||.+ +++++|+++|+.||.|..+.+..+.. ++..+|+|||+|.+.++|.+|+ .|++..++|++|.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3445789999999999 99999999999999999999988764 3888999999999999999999 9999999999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|.|+.+
T Consensus 285 V~~a~~ 290 (292)
T 2ghp_A 285 VSLADK 290 (292)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 999875
No 184
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.8e-18 Score=93.00 Aligned_cols=74 Identities=26% Similarity=0.477 Sum_probs=64.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.+..+ .+|||||+|.+.++|++++.. ...+.+++|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 4689999999999999999999999999999988754 578999999999999865442 455799999999886
Q ss_pred c
Q 034000 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 77 ~ 77 (88)
T 1wf0_A 77 P 77 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.74 E-value=1.1e-17 Score=104.82 Aligned_cols=80 Identities=21% Similarity=0.384 Sum_probs=73.0
Q ss_pred cCCCCCceEEEcCCCC-CCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034000 21 SDANSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~ 99 (106)
......++|||+|||. ++++++|+++|+.||.|..+.+..+. +|||||+|.+.++|++|+..+++..+.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4445678999999999 99999999999999999999998764 67999999999999999999999999999999
Q ss_pred EEeccc
Q 034000 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|.++.+
T Consensus 104 v~~a~~ 109 (229)
T 2adc_A 104 ITLSKH 109 (229)
T ss_dssp EECCSC
T ss_pred EEEecC
Confidence 998753
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.74 E-value=3.1e-17 Score=105.18 Aligned_cols=78 Identities=28% Similarity=0.488 Sum_probs=71.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeC-CeEEEEE
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD-GRNIRVN 101 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~-~~~i~v~ 101 (106)
....++|||+|||.++++++|+++|+.||.|..+.+..+. +|+|||+|.+.++|.+|+..|++..++ |+.|+|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 3457889999999999999999999999999999998553 479999999999999999999999999 9999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
|+++
T Consensus 279 ~akk 282 (282)
T 3pgw_A 279 FAKK 282 (282)
T ss_pred EecC
Confidence 9975
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.74 E-value=6.5e-18 Score=106.42 Aligned_cols=78 Identities=27% Similarity=0.480 Sum_probs=70.2
Q ss_pred CCCCceEEEcCCCCCC---------CHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeee
Q 034000 23 ANSRTKLFIGGLSYDT---------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i 93 (106)
....++|||+|||..+ ++++|+++|++||.|..+.++.. +|+|||+|.+.++|+.|+..|++..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4467899999999998 79999999999999999998753 58999999999999999999999999
Q ss_pred ------------CCeEEEEEecccC
Q 034000 94 ------------DGRNIRVNYAHKD 106 (106)
Q Consensus 94 ------------~~~~i~v~~~~~~ 106 (106)
.|+.|.|.||+.|
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999999754
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=102.23 Aligned_cols=76 Identities=22% Similarity=0.414 Sum_probs=70.3
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 25 SRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
..++|||+|||. ++++++|+++|+.||.|..+.+..+. +|+|||+|.+.++|++|+..+++..+.|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357899999999 99999999999999999999997764 679999999999999999999999999999999988
Q ss_pred cc
Q 034000 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 77 ~~ 78 (198)
T 1qm9_A 77 KH 78 (198)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 189
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.71 E-value=1e-16 Score=102.11 Aligned_cols=78 Identities=36% Similarity=0.603 Sum_probs=71.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+.++ +|||||+|.+.++|+.|+..+++..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3455689999999999999999999999999999988643 4799999999999999999999999999999999
Q ss_pred eccc
Q 034000 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++.+
T Consensus 92 ~a~~ 95 (261)
T 3sde_A 92 FATH 95 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 8864
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.71 E-value=4.2e-18 Score=102.33 Aligned_cols=83 Identities=27% Similarity=0.435 Sum_probs=70.7
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034000 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v 100 (106)
..+...++|||+|||.++++++|+++|+.||.+..+ ++.+..++..+|||||+|.+.++|++|++ +++..+.|++|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 355678999999999999999999999999876552 23333466778999999999999999995 9999999999999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++.+
T Consensus 86 ~~~~~ 90 (175)
T 1fje_B 86 EKPKG 90 (175)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98764
No 191
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.69 E-value=2.9e-16 Score=98.28 Aligned_cols=76 Identities=18% Similarity=0.319 Sum_probs=70.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccC-ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeC-CeEEEEEe
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD-GRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~-~~~i~v~~ 102 (106)
..++|||+|||.++++++|+++|+.|| .|..+.+... .+|+|||+|.+.++|.+|+..|++..++ |++|+|.|
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 468999999999999999999999999 9999998653 2579999999999999999999999999 99999999
Q ss_pred ccc
Q 034000 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+++
T Consensus 225 a~~ 227 (229)
T 2adc_A 225 SKS 227 (229)
T ss_dssp CSS
T ss_pred ecC
Confidence 976
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.69 E-value=1.4e-16 Score=102.62 Aligned_cols=80 Identities=13% Similarity=0.323 Sum_probs=69.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccC-ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~ 103 (106)
..++|||+|||.++++++|+++|+.|| .|..+.+..+. .+..+|||||+|.+.++|.+|+..+++..+.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 99999998877 4778999999999999999999999999999999999997
Q ss_pred cc
Q 034000 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 195 ~~ 196 (292)
T 2ghp_A 195 NP 196 (292)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.5e-16 Score=87.48 Aligned_cols=80 Identities=20% Similarity=0.290 Sum_probs=67.9
Q ss_pred CCCCCceEEEcCCCCCCC-----------HHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 034000 22 DANSRTKLFIGGLSYDTN-----------ETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG 90 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~ 90 (106)
.+...++|+|.|+..... +++|+++|++||.|..+.+ .+. ..+|+|||+|.+.++|++|+..||+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445678999999954432 5799999999999999965 443 2678999999999999999999999
Q ss_pred eeeCCeEEEEEeccc
Q 034000 91 LLLDGRNIRVNYAHK 105 (106)
Q Consensus 91 ~~i~~~~i~v~~~~~ 105 (106)
..++|++|+|.++.+
T Consensus 87 ~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 87 RWFGGRQITAQAWDG 101 (112)
T ss_dssp CEETTEECEEEECCS
T ss_pred CEECCcEEEEEEeCC
Confidence 999999999999764
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=97.52 Aligned_cols=76 Identities=18% Similarity=0.316 Sum_probs=70.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccC-ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeC-CeEEEEEe
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD-GRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~-~~~i~v~~ 102 (106)
..++|||+|||..+++++|+++|+.|| .|..+.+..+. +|+|||+|.+.++|.+|+..|++..++ |++|+|.|
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 478999999999999999999999999 99999986542 579999999999999999999999999 99999999
Q ss_pred ccc
Q 034000 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+++
T Consensus 194 a~~ 196 (198)
T 1qm9_A 194 SKS 196 (198)
T ss_dssp ECC
T ss_pred ecc
Confidence 876
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.67 E-value=6.1e-16 Score=98.54 Aligned_cols=80 Identities=30% Similarity=0.468 Sum_probs=71.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHh-CCeeeC---CeEEEE
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM-DGLLLD---GRNIRV 100 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l-~~~~i~---~~~i~v 100 (106)
...+|||+|||..+++++|+++|+.||.|..+.++.+. ++.++|+|||+|.+.++|.+|+..+ ++..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 46789999999999999999999999999999999985 8889999999999999999999999 444544 899999
Q ss_pred Eeccc
Q 034000 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++.+
T Consensus 174 ~~~~~ 178 (261)
T 3sde_A 174 EPMEQ 178 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98753
No 196
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.67 E-value=2.2e-16 Score=97.65 Aligned_cols=77 Identities=13% Similarity=0.192 Sum_probs=67.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCce--eEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCe----EE
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEI--IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR----NI 98 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~----~i 98 (106)
..++|||+|||+++++++|+++|++||.| ..+.+..+. +..+|+|||+|.+.++|.+|+..||+..+.|. ++
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 35789999999999999999999999998 888887764 44569999999999999999999999999876 56
Q ss_pred EEEec
Q 034000 99 RVNYA 103 (106)
Q Consensus 99 ~v~~~ 103 (106)
.|.++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66654
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.66 E-value=7e-17 Score=90.16 Aligned_cols=72 Identities=21% Similarity=0.387 Sum_probs=63.4
Q ss_pred EcCCCCCCCHHHHHHHh------------cccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034000 31 IGGLSYDTNETVLKDAF------------GQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 31 v~~lp~~~~~~~l~~~f------------~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i 98 (106)
+.+||..+++++|++.| ++||.|..+.+.++. ++..+|+|||+|.+.++|++|+..|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777777777666 999999999998876 47789999999999999999999999999999999
Q ss_pred EEEec
Q 034000 99 RVNYA 103 (106)
Q Consensus 99 ~v~~~ 103 (106)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=7.7e-16 Score=92.02 Aligned_cols=74 Identities=23% Similarity=0.642 Sum_probs=65.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccc----C-------ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeee
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQH----G-------EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i 93 (106)
..++|||+|||.++++++|+++|+.| | .|..+.+..+ +|+|||+|.+.++|++|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46799999999999999999999999 6 6676666433 589999999999999999 7999999
Q ss_pred CCeEEEEEeccc
Q 034000 94 DGRNIRVNYAHK 105 (106)
Q Consensus 94 ~~~~i~v~~~~~ 105 (106)
.|++|+|.++..
T Consensus 76 ~g~~i~v~~~~~ 87 (172)
T 2g4b_A 76 QGQSLKIRRPHD 87 (172)
T ss_dssp TTEECEEECCSS
T ss_pred cCceeeecCCcc
Confidence 999999998753
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.64 E-value=1.1e-15 Score=93.23 Aligned_cols=74 Identities=22% Similarity=0.630 Sum_probs=64.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccc----C-------ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeee
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQH----G-------EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i 93 (106)
..++|||+|||.++++++|+++|+.| | .|..+.+. ..+|||||+|.+.++|++|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 55555553 23689999999999999999 7999999
Q ss_pred CCeEEEEEeccc
Q 034000 94 DGRNIRVNYAHK 105 (106)
Q Consensus 94 ~~~~i~v~~~~~ 105 (106)
.|++|+|.++.+
T Consensus 76 ~g~~i~v~~~~~ 87 (198)
T 2yh0_A 76 QGQSLKIRRPHD 87 (198)
T ss_dssp TTEEEEEECCCC
T ss_pred cCceEEEeCCCC
Confidence 999999998753
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.64 E-value=7.3e-16 Score=86.16 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=68.0
Q ss_pred CCceEEEcCC--CCCCC--------HHHHHHHhcccCceeEEEEeecCCC--CCeeeEEEEEeCCHHHHHHHHHHhCCee
Q 034000 25 SRTKLFIGGL--SYDTN--------ETVLKDAFGQHGEIIEVKVICDRVT--GQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 25 ~~~~l~v~~l--p~~~~--------~~~l~~~f~~~g~i~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
..+.|.+.|+ |.+.. .++|++.|++||.|..+.++++..+ +..+|++||+|.+.++|++|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567888887 33333 3789999999999999999887643 3568999999999999999999999999
Q ss_pred eCCeEEEEEeccc
Q 034000 93 LDGRNIRVNYAHK 105 (106)
Q Consensus 93 i~~~~i~v~~~~~ 105 (106)
++|+.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998753
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.62 E-value=4.5e-15 Score=84.50 Aligned_cols=80 Identities=18% Similarity=0.285 Sum_probs=68.8
Q ss_pred CCceEEEcCCCC--CC---CHHHHHHHhcccCceeEEEEeecCC----CCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCC
Q 034000 25 SRTKLFIGGLSY--DT---NETVLKDAFGQHGEIIEVKVICDRV----TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG 95 (106)
Q Consensus 25 ~~~~l~v~~lp~--~~---~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~ 95 (106)
..++|++.|+-. ++ -+++|++.|++||.|..+.+..+.. ++..+|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467899998842 22 3689999999999999999988753 34578999999999999999999999999999
Q ss_pred eEEEEEecc
Q 034000 96 RNIRVNYAH 104 (106)
Q Consensus 96 ~~i~v~~~~ 104 (106)
+.|+|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999874
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=9.8e-14 Score=76.80 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=60.3
Q ss_pred CceEEEcCCC-------CCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034000 26 RTKLFIGGLS-------YDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 26 ~~~l~v~~lp-------~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i 98 (106)
..+|.|.-.+ ..+++++|+++|++||.|..+.++ +..+|||||+|.+.++|+.|+..++ .+.++.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 4566665443 458999999999999999999887 2467899999999999999999744 4679999
Q ss_pred EEEeccc
Q 034000 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
+|.|+++
T Consensus 83 ~V~~a~~ 89 (100)
T 2d9o_A 83 KISWLEG 89 (100)
T ss_dssp EEECSSC
T ss_pred EEEEccC
Confidence 9999864
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.54 E-value=3.8e-14 Score=93.40 Aligned_cols=77 Identities=13% Similarity=0.276 Sum_probs=64.2
Q ss_pred CCCCCceEEEcC--CCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeC---Ce
Q 034000 22 DANSRTKLFIGG--LSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD---GR 96 (106)
Q Consensus 22 ~~~~~~~l~v~~--lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~---~~ 96 (106)
......+|||+| |+..+++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|++.|||..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 345678999998 578999999999999999999886643 3589999999999999999999999872 34
Q ss_pred --EEEEEecc
Q 034000 97 --NIRVNYAH 104 (106)
Q Consensus 97 --~i~v~~~~ 104 (106)
.+.+.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 56666653
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.51 E-value=2.2e-13 Score=77.04 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=63.4
Q ss_pred CCCceEEEcCCCCCC----------CHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeee
Q 034000 24 NSRTKLFIGGLSYDT----------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~----------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i 93 (106)
...+.|.+.|+-..- -+++|++.|++||.|..+.+.++. .+|++||+|.+.++|++|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 345667777763221 136889999999999999886543 478999999999999999999999999
Q ss_pred CCeEEEEEecc
Q 034000 94 DGRNIRVNYAH 104 (106)
Q Consensus 94 ~~~~i~v~~~~ 104 (106)
+|+.|+|.++.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999874
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.2e-12 Score=70.59 Aligned_cols=73 Identities=21% Similarity=0.315 Sum_probs=61.6
Q ss_pred CCceEEEcCCC----CCCCH----HHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCe
Q 034000 25 SRTKLFIGGLS----YDTNE----TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR 96 (106)
Q Consensus 25 ~~~~l~v~~lp----~~~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~ 96 (106)
..-|+.|.-.| .+... .+|.+.|+.||.|..+++..+. +||+|.+.++|.+|++ |+|..+.|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 35567776665 22333 7799999999999999998764 8999999999999999 999999999
Q ss_pred EEEEEecccC
Q 034000 97 NIRVNYAHKD 106 (106)
Q Consensus 97 ~i~v~~~~~~ 106 (106)
.|+|+++.+|
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998875
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=2.2e-12 Score=73.43 Aligned_cols=77 Identities=21% Similarity=0.208 Sum_probs=67.3
Q ss_pred cCCCCCceEEEcCCCCC-CCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCC-HHHHHHHHHHhC--CeeeCCe
Q 034000 21 SDANSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFAS-EAAAGEAIKEMD--GLLLDGR 96 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~al~~l~--~~~i~~~ 96 (106)
..-.....|+|+||+.+ ++.++|+++|+.||+|..+.+..+.. .|||.|.+ ..+|..|+..++ +..|.|.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 44556889999999999 99999999999999999999987763 59999999 899999999884 7778898
Q ss_pred EEEEEec
Q 034000 97 NIRVNYA 103 (106)
Q Consensus 97 ~i~v~~~ 103 (106)
.++++..
T Consensus 87 ~~~~evL 93 (121)
T 1owx_A 87 EVTWEVL 93 (121)
T ss_dssp SEEEEEC
T ss_pred EEEEEEC
Confidence 8888764
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.21 E-value=5.3e-11 Score=74.01 Aligned_cols=66 Identities=18% Similarity=0.300 Sum_probs=59.0
Q ss_pred CHHHHHHHhcccCceeEEEEeecCC----CCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034000 39 NETVLKDAFGQHGEIIEVKVICDRV----TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 39 ~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~~~~ 104 (106)
.++++++.|++||.|..+.+..+.. ++..+|++||+|.+.++|++|+..|+|..++|+.|.+.++.
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4688999999999999999975543 34789999999999999999999999999999999999864
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1.1e-10 Score=63.29 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=60.9
Q ss_pred CCCceEEEcCCCCC-----CCH----HHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeC
Q 034000 24 NSRTKLFIGGLSYD-----TNE----TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 24 ~~~~~l~v~~lp~~-----~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~ 94 (106)
...-|+.|.-++.. +.. .+|.+.|+.||.+..+++..+. +||+|.+.++|.+|++ |+|..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 34667888877643 222 6699999999999999998764 9999999999999998 9999999
Q ss_pred CeEEEEEeccc
Q 034000 95 GRNIRVNYAHK 105 (106)
Q Consensus 95 ~~~i~v~~~~~ 105 (106)
|+.|+|++-.+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999997554
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.02 E-value=6e-09 Score=57.76 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=65.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccc-----CceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeE
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQH-----GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~ 97 (106)
....+++-+=+||..++...|+.+.+++ |.+..+.+..+- +-|+|+|.+...|-+|.-.|+|.++.|++
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3457788888999999999999999999 999999888775 46999999999999999889999999999
Q ss_pred EEEE
Q 034000 98 IRVN 101 (106)
Q Consensus 98 i~v~ 101 (106)
|++.
T Consensus 92 Lr~g 95 (117)
T 2l9w_A 92 IRSG 95 (117)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9985
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.40 E-value=3.1e-06 Score=45.94 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=48.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
.+...+.+++ .+|.++...||.++|+.|| -..|.++.+- .|||.|.+++.|..|+..+
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3445666777 9999999999999999999 4456677664 7999999999999999865
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=6.3e-05 Score=41.25 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=57.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcc---c--CceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeE
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQ---H--GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~---~--g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~ 97 (106)
.....+|.|.|||..+.++.|.-+|+. - |.|..+.... +-|+|.|.+...+++.|+. ..+.+.+..
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~ 75 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQ 75 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSB
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeE
Confidence 345788999999999999999999986 2 4677776643 3699999999999999983 367788888
Q ss_pred EEEEe
Q 034000 98 IRVNY 102 (106)
Q Consensus 98 i~v~~ 102 (106)
|.|..
T Consensus 76 LsV~P 80 (104)
T 2dhx_A 76 LSLRP 80 (104)
T ss_dssp CEEEE
T ss_pred EEEEc
Confidence 88764
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.14 E-value=1.5e-05 Score=43.80 Aligned_cols=74 Identities=11% Similarity=0.106 Sum_probs=61.6
Q ss_pred CCceEEEcCCCCCCC-----HHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034000 25 SRTKLFIGGLSYDTN-----ETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~-----~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~ 99 (106)
...+|+|.||+.++- ...++.+|..|+++....++.... =..|.|.+.++|.+|-..|++..+.|++++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 456899999988652 267899999999888877766541 267999999999999999999999999999
Q ss_pred EEecc
Q 034000 100 VNYAH 104 (106)
Q Consensus 100 v~~~~ 104 (106)
|.++.
T Consensus 78 ~YFgq 82 (104)
T 1wey_A 78 LYFAQ 82 (104)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 98864
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=98.14 E-value=5.6e-06 Score=45.07 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=46.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD 89 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~ 89 (106)
.+.+++ ++|.++...||.++|+.|| -..|.++.+- .|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 345666 9999999999999999999 5667777765 79999999999999998663
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.11 E-value=4.6e-05 Score=41.04 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=55.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCC--eeeEEEEEeCCHHHHHHHHHHhCCeee
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ--SRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~~fv~f~~~~~a~~al~~l~~~~i 93 (106)
.+|-|++||+.++++++.+.++....+........+.+.+ ..+-|+|.|.+.+++....+.++|..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 4688999999999999999999988776666666553322 345699999999999999999999985
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.98 E-value=6.9e-05 Score=42.23 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=57.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCC-eEEEEE
Q 034000 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG-RNIRVN 101 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~-~~i~v~ 101 (106)
....+.|.|-++|... ...+.+.|++||.|.+.... . ...+-.|.|.+..+|++||. .||..+++ -.|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 3457788899999996 57788899999999887662 1 23589999999999999998 59999975 556665
Q ss_pred e
Q 034000 102 Y 102 (106)
Q Consensus 102 ~ 102 (106)
.
T Consensus 93 p 93 (119)
T 1wwh_A 93 P 93 (119)
T ss_dssp E
T ss_pred E
Confidence 4
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.73 E-value=0.00019 Score=39.01 Aligned_cols=78 Identities=10% Similarity=0.074 Sum_probs=54.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCC--eeeEEEEEeCCHHHHHHHHHHhCCeeeCC-----eEE
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ--SRGYGFVKFASEAAAGEAIKEMDGLLLDG-----RNI 98 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~~fv~f~~~~~a~~al~~l~~~~i~~-----~~i 98 (106)
.-+|-|+.||+.+|++++.+.++..-++..........+.+ ..+-|+|.|.+.++.....+.++|..+-+ .+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 34688999999999999988888765543333332222221 23458999999999999999999998632 244
Q ss_pred EEEec
Q 034000 99 RVNYA 103 (106)
Q Consensus 99 ~v~~~ 103 (106)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 55554
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.43 E-value=0.00046 Score=39.47 Aligned_cols=79 Identities=16% Similarity=0.258 Sum_probs=54.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCceeE-EEEeec--------CCCC-----CeeeEEEEEeCCHHHHHHHHHHhC
Q 034000 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICD--------RVTG-----QSRGYGFVKFASEAAAGEAIKEMD 89 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~--------~~~~-----~~~g~~fv~f~~~~~a~~al~~l~ 89 (106)
.....|.|-+.|.+.. ..+.+.|++||.|.+ ...... .... ...++-.|.|.+..+|.+||+ .|
T Consensus 5 ~~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 3456678889987765 557788999999865 211110 0000 134688999999999999999 59
Q ss_pred CeeeCCeEEEEEecc
Q 034000 90 GLLLDGRNIRVNYAH 104 (106)
Q Consensus 90 ~~~i~~~~i~v~~~~ 104 (106)
|..++|.-|-|.+..
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999888777643
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.06 E-value=0.00048 Score=47.24 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=41.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHH
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIK 86 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~ 86 (106)
..+.|+|. .|...++.+|.++|+.||+|..+-...+. | .|+.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 35889997 79999999999999999999988665432 2 699999999999997765
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.62 E-value=0.00085 Score=38.86 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=35.9
Q ss_pred CCCeeeEEEEEeCCHHHHHHHHHHh-CCeeeCCeEEEEEeccc
Q 034000 64 TGQSRGYGFVKFASEAAAGEAIKEM-DGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 64 ~~~~~g~~fv~f~~~~~a~~al~~l-~~~~i~~~~i~v~~~~~ 105 (106)
....+|+++++|.+.++|++|+..+ ++..++| .+.+.++.+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3456899999999999999999999 9999999 999987653
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.22 E-value=0.0085 Score=34.74 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=25.9
Q ss_pred EEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCC
Q 034000 56 VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG 90 (106)
Q Consensus 56 ~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~ 90 (106)
+.+.++. ...+||+||+|.+.++|++|+..+++
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhcc
Confidence 3445543 35789999999999999999987664
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.84 E-value=0.061 Score=37.36 Aligned_cols=56 Identities=18% Similarity=0.260 Sum_probs=45.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhC
Q 034000 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD 89 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~ 89 (106)
..+.++|+ +|..+...+|.+.|+.||.+ .+.++.+. .+||.|.+.+.+..++..+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 35666665 99999999999999999954 45555443 69999999999999999874
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=48.46 E-value=8.9 Score=19.00 Aligned_cols=68 Identities=16% Similarity=0.300 Sum_probs=38.2
Q ss_pred eEEEc-CCCCCCCHHHHHHHhcccC-----ceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034000 28 KLFIG-GLSYDTNETVLKDAFGQHG-----EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 28 ~l~v~-~lp~~~~~~~l~~~f~~~g-----~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~i~~~~i~v~ 101 (106)
++++. +-...+...+|..++..-+ .|-.+.+.. .+.||+..... +..++..+.+..+.|+++.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNGK-GPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTTC-HHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHHH-HHHHHHHhccccCcCceEEEE
Confidence 45553 2233456667777765432 245555532 26888776544 456777788889999999988
Q ss_pred ecc
Q 034000 102 YAH 104 (106)
Q Consensus 102 ~~~ 104 (106)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 765
No 223
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=41.80 E-value=60 Score=23.35 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHhc----ccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 034000 33 GLSYDTNETVLKDAFG----QHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 33 ~lp~~~~~~~l~~~f~----~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
..+++.+..+|.++|- .+|-|.++.+...+ -.......++.|.+.+++..++..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHH
Confidence 4566666678888883 45778888775554 3445668899999999988887654
No 224
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=34.83 E-value=44 Score=17.37 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.1
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhCCee
Q 034000 67 SRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 67 ~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
..||-||++....+...+++...+..
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCce
Confidence 57899999999999888888777664
No 225
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=33.92 E-value=76 Score=18.87 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=35.8
Q ss_pred EEEcCCCCC---------CCHHHHHHHh--cccCceeEEEEeecCCCCCeeeEEEEEeC-CHHHHHHHHH
Q 034000 29 LFIGGLSYD---------TNETVLKDAF--GQHGEIIEVKVICDRVTGQSRGYGFVKFA-SEAAAGEAIK 86 (106)
Q Consensus 29 l~v~~lp~~---------~~~~~l~~~f--~~~g~i~~~~~~~~~~~~~~~g~~fv~f~-~~~~a~~al~ 86 (106)
..|-|+|.. ....+|++.| +.|.++. +..+..+ ..+.|++.|.|. +..-...|+.
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 446677751 3447899977 8898765 4444443 347889999998 4555555554
No 226
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=28.58 E-value=29 Score=13.51 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=9.7
Q ss_pred CHHHHHHHhccc
Q 034000 39 NETVLKDAFGQH 50 (106)
Q Consensus 39 ~~~~l~~~f~~~ 50 (106)
++.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 678889888776
No 227
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=28.31 E-value=44 Score=18.04 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.0
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhCCe
Q 034000 67 SRGYGFVKFASEAAAGEAIKEMDGL 91 (106)
Q Consensus 67 ~~g~~fv~f~~~~~a~~al~~l~~~ 91 (106)
.+||-||+=.+..+...|++.+.+.
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 5789999999999999999865444
No 228
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=28.31 E-value=38 Score=21.45 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=25.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCceeEEEEee
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVIC 60 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~ 60 (106)
....|+|+|+.++..-|.+++.....+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4567899999999999999997544455544433
No 229
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=27.73 E-value=66 Score=20.28 Aligned_cols=32 Identities=13% Similarity=0.346 Sum_probs=24.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCceeEEEE
Q 034000 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKV 58 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~ 58 (106)
...+.|+|+|..++..-+.+++.. +.+....+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 345779999999999999999876 55544433
No 230
>2dzr_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-067, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.02 E-value=79 Score=16.92 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=23.8
Q ss_pred CCceEEEcCCCCCCC--------HHHHHHHhcccCceeEE
Q 034000 25 SRTKLFIGGLSYDTN--------ETVLKDAFGQHGEIIEV 56 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~--------~~~l~~~f~~~g~i~~~ 56 (106)
....++|.+||..+. ...|++++..-..|..+
T Consensus 40 np~av~V~GLPegIpFr~P~~ygi~~Le~IL~~~~~I~F~ 79 (99)
T 2dzr_A 40 NPGSVIIEGLPPGIPFRKPCTFGSQNLERILAVADKIKFT 79 (99)
T ss_dssp CSSSEEEESCCTTCCSSCGGGSCHHHHHHHHHHTTTCEEE
T ss_pred CCCeEEEecCCCCCcccCCCcccHHHHHHHHHhccCcEEE
Confidence 355799999998764 47788888776667665
No 231
>2d9b_A Gtfii-I, general transcription factor II-I, TFII-I; structural genomics, unknown function, NPPSFA; NMR {Homo sapiens} PDB: 2e3l_A
Probab=26.32 E-value=86 Score=17.11 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=24.0
Q ss_pred CceEEEcCCCCCCC--------HHHHHHHhcccCceeEE
Q 034000 26 RTKLFIGGLSYDTN--------ETVLKDAFGQHGEIIEV 56 (106)
Q Consensus 26 ~~~l~v~~lp~~~~--------~~~l~~~f~~~g~i~~~ 56 (106)
...|+|.+||..+. ...|+++++.-..|.++
T Consensus 51 p~~v~V~GLPegi~fR~P~~Ygi~~L~~ILe~~~~I~Fv 89 (109)
T 2d9b_A 51 QSAVVVQGLPEGVAFKHPENYDLATLKWILENKAGISFI 89 (109)
T ss_dssp CSSEEEESCCTTCCSCCTTSSCHHHHHHHHHTTTTCEEE
T ss_pred CccEEEeeCCCCCccCCccccCHHHHHHHHHcCcCceEE
Confidence 45699999987654 57899999877777766
No 232
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.77 E-value=12 Score=21.47 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=13.2
Q ss_pred HHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeC
Q 034000 42 VLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFA 76 (106)
Q Consensus 42 ~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~ 76 (106)
++.+++...|.|... .. .+||+||.-.
T Consensus 3 ~~~~l~~~~G~Vkwf---n~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 3 DEPQLLHGAGICKWF---NV-----RMGFGFLSMT 29 (148)
T ss_dssp ---CCEEEEEEEEEE---ET-----TTTEEEEEEE
T ss_pred cccccccceeEEEEE---EC-----CCCeeEEeeC
Confidence 344555555655432 22 2468888754
No 233
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=25.45 E-value=1e+02 Score=17.68 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=31.0
Q ss_pred HHHHHHhcccCceeEEE-EeecCCCCC--------------eeeEEEEEeCCHHHHHHHHHH
Q 034000 41 TVLKDAFGQHGEIIEVK-VICDRVTGQ--------------SRGYGFVKFASEAAAGEAIKE 87 (106)
Q Consensus 41 ~~l~~~f~~~g~i~~~~-~~~~~~~~~--------------~~g~~fv~f~~~~~a~~al~~ 87 (106)
.....+|..||.+..+. +-.+-..|+ .--|++|+|.+.+...++..+
T Consensus 48 ~~a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 48 AKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 34557788999876553 333322233 334899999999988888743
No 234
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=25.32 E-value=87 Score=16.79 Aligned_cols=49 Identities=8% Similarity=0.245 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHhcc-cC---ceeEE-EEeecCCCCCeeeEEEEEeCCHHHHHHHH
Q 034000 36 YDTNETVLKDAFGQ-HG---EIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEAI 85 (106)
Q Consensus 36 ~~~~~~~l~~~f~~-~g---~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~al 85 (106)
.+.+..++++-+.. |+ ....+ .+....-.++..|||.| |.+.+.+.+.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 45666777776653 43 23333 33333334556777776 77777776544
No 235
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=25.13 E-value=50 Score=17.63 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhcc-cCceeEEEEeecC----CCCCeeeEEEEEeCCHHHHHH
Q 034000 36 YDTNETVLKDAFGQ-HGEIIEVKVICDR----VTGQSRGYGFVKFASEAAAGE 83 (106)
Q Consensus 36 ~~~~~~~l~~~f~~-~g~i~~~~~~~~~----~~~~~~g~~fv~f~~~~~a~~ 83 (106)
.+.+..++++-+.. |+.-..+-++..- -.++..|||.| |.+.+.+.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 34566677666653 4322222222222 13445666666 666655543
No 236
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=30.43 E-value=16 Score=19.84 Aligned_cols=67 Identities=18% Similarity=0.080 Sum_probs=38.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCceeEEEEeecCCCCCe-eeEEEEEeCCHHHHHHHHHHhCCee
Q 034000 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQS-RGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
.+....+|.+.... ..+++..+....+ +..+.+.....+|+. --.-+-.|.+.++|..|+..|....
T Consensus 21 ~p~~~YTLQL~a~~---~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 21 APSSHYTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 33445666664443 3455666666665 333444333223322 2245568899999999999886543
No 237
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=23.60 E-value=79 Score=19.23 Aligned_cols=26 Identities=4% Similarity=0.112 Sum_probs=22.7
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhCCee
Q 034000 67 SRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 67 ~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
-+||-||+=.+......|++.+.+..
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy 173 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIY 173 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhh
Confidence 57899999999999999998877754
No 238
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=22.97 E-value=1.3e+02 Score=18.18 Aligned_cols=55 Identities=9% Similarity=0.169 Sum_probs=36.2
Q ss_pred CHHHHHHHhcccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHhCCee------eCCe-EEEE
Q 034000 39 NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL------LDGR-NIRV 100 (106)
Q Consensus 39 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~------i~~~-~i~v 100 (106)
.+++|.+-...|.+.. +..+.-+---||++.+.......+..|.|+. ++|. +|..
T Consensus 66 ~~~~I~~Ei~aYnpLi-------P~~~~l~ATl~IE~~d~~er~~~L~~L~Gie~~v~l~v~~~~~V~a 127 (194)
T 3fjv_A 66 DEDGIQAELDAYLPLV-------PDGSNLKATLQIEYENETQRRAALARLVGIEDRVFLRVDDEAPVYA 127 (194)
T ss_dssp SHHHHHHHHHHHGGGC-------CCSSEEEEEEEECCSSHHHHHHHHHHTTTGGGSEEEEETTSCCEEC
T ss_pred CHHHHHHHHHHhcccC-------CCCCcEEEEEEEEcCCHHHHHHHHHHhcCccceEEEEECCcceeee
Confidence 4455555555555432 2233334568899999999999999998874 5665 4553
No 239
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=22.26 E-value=47 Score=12.65 Aligned_cols=12 Identities=25% Similarity=0.374 Sum_probs=8.9
Q ss_pred HHHHHHHhcccC
Q 034000 40 ETVLKDAFGQHG 51 (106)
Q Consensus 40 ~~~l~~~f~~~g 51 (106)
..+++++|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 467788888776
No 240
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=22.04 E-value=1e+02 Score=16.54 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHhcc-cC---ceeEE-EEeecCCCCCeeeEEEEEeCCHHHHHH
Q 034000 36 YDTNETVLKDAFGQ-HG---EIIEV-KVICDRVTGQSRGYGFVKFASEAAAGE 83 (106)
Q Consensus 36 ~~~~~~~l~~~f~~-~g---~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~ 83 (106)
.+.+..++++-+.. |+ ....+ .+....-.++..|||.| |.+.+.+.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45667777776653 33 23333 33333334567778877 777777654
No 241
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=21.81 E-value=1.1e+02 Score=16.62 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHhcc-cC---ceeEE-EEeecCCCCCeeeEEEEEeCCHHHHHHH
Q 034000 36 YDTNETVLKDAFGQ-HG---EIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEA 84 (106)
Q Consensus 36 ~~~~~~~l~~~f~~-~g---~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a 84 (106)
.+.+..++++-+.. |+ ....+ .+....-.++..|||.| |.+.+.+.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 34566777666653 43 23333 33333334557788877 7888777644
No 242
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=21.53 E-value=32 Score=18.55 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=8.1
Q ss_pred HHHHHHHhcccC
Q 034000 40 ETVLKDAFGQHG 51 (106)
Q Consensus 40 ~~~l~~~f~~~g 51 (106)
...|+++|.+||
T Consensus 90 I~~ire~fqKYG 101 (101)
T 4aj5_1 90 IMKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHcC
Confidence 356788888887
No 243
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=21.30 E-value=1.2e+02 Score=18.71 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=19.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccc
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQH 50 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~ 50 (106)
..+.|+|+|+.++..-+.+++...
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~ 114 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYT 114 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTG
T ss_pred ceEEEECCCCCccHHHHHHHHhcC
Confidence 357789999999988888877643
No 244
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=21.12 E-value=33 Score=21.37 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=23.3
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCceeEEEEe
Q 034000 29 LFIGGLSYDTNETVLKDAFGQHGEIIEVKVI 59 (106)
Q Consensus 29 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~ 59 (106)
..|+|+|+.++..-+.+++...+.+....++
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 4789999999999999998765555544443
No 245
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=20.53 E-value=1.2e+02 Score=17.16 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=21.6
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhCCee
Q 034000 67 SRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 67 ~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
..||-||+.....+...+++...|..
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~gV~ 67 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRHAR 67 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTTEE
T ss_pred CCcEEEEEEEchHHHHHHHhCCCCEE
Confidence 56899999999988888888777653
No 246
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=20.43 E-value=1.2e+02 Score=21.03 Aligned_cols=42 Identities=19% Similarity=0.008 Sum_probs=27.4
Q ss_pred HHHHHh--cccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHH
Q 034000 42 VLKDAF--GQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEA 84 (106)
Q Consensus 42 ~l~~~f--~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 84 (106)
++..+| +.+|-|..+.+...+ .......+++.|.+.+++..+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p-~p~~~~~~~~~f~~~~~~~~~ 260 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMP-KPPVFKPFEVIFEDEADIVEI 260 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEE-CCSEEEEEEEEECCGGGHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEe-cCCeEEEEEEEeCCHHHHHHH
Confidence 456666 357888888775555 344455678889886665543
No 247
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=20.34 E-value=96 Score=19.10 Aligned_cols=28 Identities=11% Similarity=0.285 Sum_probs=21.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCcee
Q 034000 27 TKLFIGGLSYDTNETVLKDAFGQHGEII 54 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~ 54 (106)
..+.|+|+|...+..-+.+++.....+.
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~ 123 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVP 123 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCS
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCc
Confidence 3477899999999988888887543333
No 248
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=20.06 E-value=2.2e+02 Score=19.55 Aligned_cols=54 Identities=20% Similarity=0.117 Sum_probs=35.0
Q ss_pred CCCCCCHHHHHHHhc----ccCceeEEEEeecCCCCCeeeEEEEEeCCHHHHHHHHHHh
Q 034000 34 LSYDTNETVLKDAFG----QHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 34 lp~~~~~~~l~~~f~----~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
++++.+..+++..|. .+|-|..+.+...+ ........++.|.+.+++..++..+
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p-~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFP-KPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEE-CCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEee-cCceeEEEEEEcCCHHHHHHHHHHH
Confidence 444444456666654 34667787765554 3344567889999999888877654
Done!