BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034001
         (106 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
           At1g70830, A Member Of The Major Latex Protein Family
          Length = 166

 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 1/100 (1%)

Query: 2   GKPGTVITWTYKHDGVTXXXXXXXXXXXXXXNSTTFKVIEGHLLDKYNSFYVTVQAIPK- 60
           G  G+++ W Y HDG                N  TF+VIEG L+ +Y SF +T+Q  PK 
Sbjct: 62  GTVGSIVFWNYVHDGEAKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKP 121

Query: 61  GEHSCLARWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAH 100
           G    +  W ++YEK SE+V  P+ ++   +E++K I+ H
Sbjct: 122 GGPGSIVHWHLEYEKISEEVAHPETLLQFCVEVSKEIDEH 161


>pdb|2VNE|A Chain A, The X-Ray Structure Of Norcoclaurine Synthase From
           Thalictrum Flavum
 pdb|2VNE|B Chain B, The X-Ray Structure Of Norcoclaurine Synthase From
           Thalictrum Flavum
 pdb|2VQ5|A Chain A, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
           Flavum In Complex With Dopamine And Hydroxybenzaldehyde
 pdb|2VQ5|B Chain B, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
           Flavum In Complex With Dopamine And Hydroxybenzaldehyde
          Length = 201

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 38  KVIEGHLLDKYNSFYV-TVQAIPKGEHSCLARWTIKYEKKSEDV 80
           + IEG  LD   ++Y  T+  +P G+ SC+ + + +Y  K E V
Sbjct: 110 QXIEGGYLDLGVTYYXDTIHVVPTGKDSCVIKSSTEYHVKPEFV 153


>pdb|1VJH|A Chain A, Crystal Structure Of Gene Product Of At1g24000 From
           Arabidopsis Thaliana
 pdb|1VJH|B Chain B, Crystal Structure Of Gene Product Of At1g24000 From
           Arabidopsis Thaliana
 pdb|2Q3Q|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
           At1g24000 From Arabidopsis Thaliana
 pdb|2Q3Q|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
           At1g24000 From Arabidopsis Thaliana
          Length = 122

 Score = 27.3 bits (59), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 37  FKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDVPDPQGIVNLAIEMTKG 96
           FK ++G       S  VT   +  G H     WT  +EK  +D+ DP  I++ +++  K 
Sbjct: 63  FKTLKG-------SIAVTPIGVGDGSHVV---WTFHFEKVHKDIDDPHSIIDESVKYFKK 112

Query: 97  IE 98
           ++
Sbjct: 113 LD 114


>pdb|1CVD|A Chain A, Structural Consequences Of Redesigning A Protein-Zinc
           Binding Site
          Length = 255

 Score = 25.8 bits (55), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 36  TFKVIEGHL----LDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDVPDPQGIVNLAI 91
           T+++I+ H     LD   S + TV         CL  W  KY    + V  P G+  L I
Sbjct: 83  TYRLIQFHFHWGSLDGQGSEH-TVDKKKYAAELCLVHWNTKYGDFGKAVQQPDGLAVLGI 141

Query: 92  EMTKG 96
            +  G
Sbjct: 142 FLKVG 146


>pdb|3RWS|A Chain A, Crystal Structure Of Medicago Truncatula Nodulin 13
           (Mtn13) In Complex With Trans-Zeatin
          Length = 168

 Score = 25.8 bits (55), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 36  TFKVIEGHLLDK--YNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDVPDPQGIVNLAIEM 93
           T+ V EG  L            + +P  E  C+ + T KY  K +D+   +  +   IE 
Sbjct: 86  TYSVYEGIALSDQPLEKIVFEFKLVPTPEEGCIVKSTTKYYTKGDDIELSKDYLEAGIER 145

Query: 94  TKGI 97
            +G 
Sbjct: 146 FEGF 149


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.133    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,223,092
Number of Sequences: 62578
Number of extensions: 102685
Number of successful extensions: 264
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 6
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)