Query 034001
Match_columns 106
No_of_seqs 109 out of 732
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:41:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 1.2E-32 2.5E-37 187.0 13.1 103 2-104 48-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 5.1E-28 1.1E-32 163.2 15.2 103 2-104 45-148 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.1 9.8E-09 2.1E-13 66.3 12.1 93 3-101 44-139 (140)
4 PF10604 Polyketide_cyc2: Poly 98.4 5E-05 1.1E-09 48.7 13.7 66 2-75 43-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 98.2 6.9E-05 1.5E-09 48.9 11.4 73 21-100 63-141 (144)
6 cd08865 SRPBCC_10 Ligand-bindi 97.9 0.00052 1.1E-08 43.8 11.7 66 3-75 43-108 (140)
7 cd08861 OtcD1_ARO-CYC_like N-t 97.9 0.0014 3.1E-08 42.5 13.1 69 7-78 45-113 (142)
8 cd07813 COQ10p_like Coenzyme Q 97.8 0.001 2.2E-08 43.3 11.3 87 6-101 44-135 (138)
9 cd07822 SRPBCC_4 Ligand-bindin 97.7 0.0046 1E-07 39.5 12.6 70 3-75 41-111 (141)
10 PRK10724 hypothetical protein; 97.5 0.0023 4.9E-08 43.7 10.2 83 8-99 62-149 (158)
11 cd07825 SRPBCC_7 Ligand-bindin 97.5 0.0043 9.3E-08 40.3 11.0 96 3-101 45-143 (144)
12 cd07812 SRPBCC START/RHO_alpha 97.4 0.0092 2E-07 36.8 11.7 56 19-78 58-113 (141)
13 cd07819 SRPBCC_2 Ligand-bindin 97.4 0.015 3.2E-07 37.2 13.0 42 32-77 73-114 (140)
14 cd07820 SRPBCC_3 Ligand-bindin 97.0 0.016 3.5E-07 37.7 9.9 66 4-75 46-111 (137)
15 cd07814 SRPBCC_CalC_Aha1-like 97.0 0.021 4.6E-07 36.4 10.0 69 5-76 43-111 (139)
16 cd07818 SRPBCC_1 Ligand-bindin 97.0 0.037 7.9E-07 36.2 11.1 69 3-77 50-118 (150)
17 cd08862 SRPBCC_Smu440-like Lig 96.3 0.13 2.8E-06 32.7 10.9 64 3-75 44-107 (138)
18 cd07817 SRPBCC_8 Ligand-bindin 96.1 0.17 3.8E-06 32.2 10.6 56 16-77 52-107 (139)
19 cd05018 CoxG Carbon monoxide d 95.7 0.28 6.1E-06 31.3 13.0 54 22-78 62-115 (144)
20 cd07823 SRPBCC_5 Ligand-bindin 94.9 0.54 1.2E-05 30.7 9.1 54 24-78 62-116 (146)
21 cd08860 TcmN_ARO-CYC_like N-te 94.7 0.8 1.7E-05 30.5 11.7 59 15-79 57-116 (146)
22 cd07824 SRPBCC_6 Ligand-bindin 94.2 0.97 2.1E-05 29.5 12.2 50 20-77 64-113 (146)
23 COG2867 Oligoketide cyclase/li 94.2 0.25 5.5E-06 33.5 6.1 54 20-78 61-114 (146)
24 PF03364 Polyketide_cyc: Polyk 94.0 0.95 2.1E-05 28.6 11.8 71 9-86 41-113 (130)
25 cd08899 SRPBCC_CalC_Aha1-like_ 92.9 1.9 4.1E-05 28.7 9.4 90 4-104 49-138 (157)
26 COG3427 Carbon monoxide dehydr 92.5 0.88 1.9E-05 30.9 6.8 54 22-77 61-114 (146)
27 PF06240 COXG: Carbon monoxide 91.9 2.4 5.2E-05 27.7 8.7 54 22-78 57-111 (140)
28 cd08894 SRPBCC_CalC_Aha1-like_ 90.1 3.6 7.9E-05 26.6 8.8 66 24-102 66-138 (139)
29 cd08898 SRPBCC_CalC_Aha1-like_ 77.7 15 0.00033 23.2 9.3 80 21-102 57-144 (145)
30 PF08327 AHSA1: Activator of H 75.7 16 0.00034 22.4 9.8 91 4-101 32-123 (124)
31 cd08891 SRPBCC_CalC Ligand-bin 70.9 26 0.00056 22.7 9.1 76 24-101 65-147 (149)
32 cd07826 SRPBCC_CalC_Aha1-like_ 68.7 29 0.00062 22.4 9.6 75 23-102 65-141 (142)
33 cd08900 SRPBCC_CalC_Aha1-like_ 66.4 32 0.00069 22.1 13.4 76 21-101 64-141 (143)
34 cd08873 START_STARD14_15-like 65.7 38 0.00082 24.6 6.6 57 48-104 177-235 (235)
35 cd08893 SRPBCC_CalC_Aha1-like_ 62.1 35 0.00077 21.1 9.4 77 21-101 56-134 (136)
36 PTZ00220 Activator of HSP-90 A 59.3 45 0.00098 21.5 8.4 50 52-101 73-126 (132)
37 KOG1538 Uncharacterized conser 57.4 24 0.00051 30.1 4.7 63 6-75 14-86 (1081)
38 cd08896 SRPBCC_CalC_Aha1-like_ 53.9 57 0.0012 21.0 11.9 75 22-102 64-145 (146)
39 cd08897 SRPBCC_CalC_Aha1-like_ 52.8 57 0.0012 20.6 11.1 65 24-102 68-132 (133)
40 cd08874 START_STARD9-like C-te 52.2 82 0.0018 22.3 6.4 35 48-82 145-182 (205)
41 COG5637 Predicted integral mem 51.7 86 0.0019 22.4 8.1 63 9-76 114-177 (217)
42 TIGR02208 lipid_A_msbB lipid A 51.1 23 0.00051 26.2 3.6 38 68-106 248-285 (305)
43 cd08877 START_2 Uncharacterize 47.6 94 0.002 21.6 6.3 52 48-99 156-210 (215)
44 PRK05645 lipid A biosynthesis 45.8 31 0.00067 25.3 3.5 38 68-106 238-275 (295)
45 cd08885 RHO_alpha_C_1 C-termin 43.9 98 0.0021 20.8 7.2 43 32-74 81-123 (190)
46 PRK08733 lipid A biosynthesis 43.6 34 0.00074 25.3 3.4 38 68-106 248-285 (306)
47 PF10313 DUF2415: Uncharacteri 43.6 38 0.00082 18.2 2.7 11 5-15 1-11 (43)
48 TIGR02207 lipid_A_htrB lipid A 43.4 35 0.00075 25.2 3.4 38 68-106 245-282 (303)
49 smart00234 START in StAR and p 41.0 1.1E+02 0.0024 20.7 6.6 31 48-78 145-175 (206)
50 PRK08706 lipid A biosynthesis 41.0 35 0.00076 24.9 3.1 38 68-106 232-269 (289)
51 cd08869 START_RhoGAP C-termina 40.3 80 0.0017 21.8 4.7 31 48-78 140-170 (197)
52 PRK06860 lipid A biosynthesis 39.7 45 0.00097 24.7 3.5 38 68-106 251-288 (309)
53 cd00177 START Lipid-binding ST 39.1 1E+02 0.0022 20.2 5.0 27 52-78 141-167 (193)
54 COG0231 Efp Translation elonga 38.4 62 0.0013 21.3 3.7 34 22-55 59-97 (131)
55 PF10698 DUF2505: Protein of u 36.6 1.3E+02 0.0028 20.0 7.8 45 28-76 84-128 (159)
56 PRK08943 lipid A biosynthesis 36.1 54 0.0012 24.4 3.5 38 68-106 257-294 (314)
57 PF01852 START: START domain; 35.8 1.4E+02 0.003 20.1 5.5 31 48-78 145-175 (206)
58 cd08876 START_1 Uncharacterize 35.1 1.4E+02 0.0031 20.0 10.8 50 48-100 139-193 (195)
59 cd08895 SRPBCC_CalC_Aha1-like_ 34.7 1.2E+02 0.0027 19.3 12.6 74 22-102 71-145 (146)
60 PF14275 DUF4362: Domain of un 34.0 1.2E+02 0.0027 19.0 4.9 33 2-39 28-60 (98)
61 PRK05646 lipid A biosynthesis 33.8 58 0.0013 24.1 3.4 38 68-106 249-286 (310)
62 PRK08734 lipid A biosynthesis 31.4 68 0.0015 23.8 3.4 38 68-106 239-276 (305)
63 PRK08905 lipid A biosynthesis 31.3 60 0.0013 23.8 3.0 37 68-106 227-263 (289)
64 cd00680 RHO_alpha_C C-terminal 30.2 1.6E+02 0.0034 19.1 8.3 43 33-75 80-122 (188)
65 PF03279 Lip_A_acyltrans: Bact 29.9 80 0.0017 22.9 3.5 39 67-106 246-284 (295)
66 PF10651 DUF2479: Domain of un 29.6 1.8E+02 0.0039 19.6 6.5 57 19-76 68-124 (170)
67 cd08905 START_STARD1-like Chol 29.1 2E+02 0.0044 20.0 6.1 31 48-78 149-181 (209)
68 PRK07920 lipid A biosynthesis 28.7 65 0.0014 23.7 2.9 37 69-106 236-272 (298)
69 cd08871 START_STARD10-like Lip 28.3 2.1E+02 0.0045 19.9 6.5 30 49-78 146-175 (222)
70 PF08868 YugN: YugN-like famil 27.2 38 0.00082 22.6 1.2 28 74-101 104-131 (132)
71 PF15416 DUF4623: Domain of un 27.0 1.6E+02 0.0036 23.1 4.8 50 5-60 16-65 (442)
72 PRK06553 lipid A biosynthesis 26.9 86 0.0019 23.2 3.3 39 68-106 257-298 (308)
73 cd08872 START_STARD11-like Cer 26.8 52 0.0011 23.7 2.0 42 61-103 182-226 (235)
74 COG5569 Uncharacterized conser 26.7 67 0.0015 20.5 2.2 41 4-45 41-81 (108)
75 PF07474 G2F: G2F domain; Int 26.6 2.4E+02 0.0051 20.0 5.2 36 9-45 93-128 (192)
76 cd07984 LPLAT_LABLAT-like Lyso 25.7 94 0.002 20.7 3.1 38 68-106 145-182 (192)
77 cd00255 nidG2 Nidogen, G2 doma 25.3 2.2E+02 0.0048 20.7 5.0 38 8-45 90-127 (224)
78 PRK06946 lipid A biosynthesis 24.5 1.1E+02 0.0024 22.5 3.4 23 84-106 251-273 (293)
79 PF00028 Cadherin: Cadherin do 24.4 1.6E+02 0.0034 17.1 5.2 25 19-43 12-39 (93)
80 PF08473 VGCC_alpha2: Neuronal 24.0 1.8E+02 0.0039 18.3 3.7 17 27-43 38-54 (94)
81 PF15650 Tox-REase-9: Restrict 23.3 68 0.0015 20.0 1.8 27 5-39 26-52 (89)
82 PF02087 Nitrophorin: Nitropho 23.1 2.7E+02 0.0059 19.5 6.1 26 19-44 48-73 (178)
83 PRK08419 lipid A biosynthesis 22.3 1.2E+02 0.0027 22.1 3.3 23 84-106 257-279 (298)
84 PF11192 DUF2977: Protein of u 22.0 1.1E+02 0.0024 17.7 2.4 16 27-42 4-19 (62)
85 cd08910 START_STARD2-like Lipi 22.0 2.8E+02 0.0062 19.3 7.3 30 48-77 149-178 (207)
86 COG2123 RNase PH-related exori 21.9 1.1E+02 0.0023 23.0 2.9 23 47-69 32-54 (272)
87 PRK08025 lipid A biosynthesis 21.8 1.3E+02 0.0028 22.2 3.4 36 69-106 250-285 (305)
88 TIGR02777 LigD_PE_dom DNA liga 21.2 1.5E+02 0.0033 20.3 3.3 15 63-77 95-110 (156)
89 cd08908 START_STARD12-like C-t 20.9 3.1E+02 0.0068 19.3 6.8 31 48-78 147-177 (204)
90 smart00682 G2F G2 nidogen doma 20.7 2.7E+02 0.0059 20.3 4.7 36 9-45 93-128 (227)
91 cd08870 START_STARD2_7-like Li 20.7 3E+02 0.0065 19.0 6.3 31 47-77 148-180 (209)
92 KOG3294 WW domain binding prot 20.7 2.9E+02 0.0063 20.5 4.8 44 48-99 91-134 (261)
93 cd08909 START_STARD13-like C-t 20.4 2E+02 0.0044 20.4 4.0 30 49-78 149-178 (205)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=1.2e-32 Score=186.98 Aligned_cols=103 Identities=45% Similarity=0.826 Sum_probs=97.2
Q ss_pred CCCC-eEEEEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCCCCC
Q 034001 2 GKPG-TVITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDV 80 (106)
Q Consensus 2 g~~G-svr~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~~ 80 (106)
|++| |||.|+|.+++++.++||||+.+|+++++++|++|||+++..|++|+.++++.|.++|+|+++|+++|++.+++.
T Consensus 48 gg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~~~~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~ 127 (151)
T PF00407_consen 48 GGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENKTITYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDV 127 (151)
T ss_dssp SSTTT-EEEEEEETTSSEEEEEEEEEEEETTTTEEEEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSC
T ss_pred CCCCCeEEEEEecCCCCcceeEEEEEeecCCCcEEEEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCC
Confidence 5666 999999998888889999999999999999999999999988999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCC
Q 034001 81 PDPQGIVNLAIEMTKGIEAHHPPK 104 (106)
Q Consensus 81 ~~p~~~~~~~~~~~k~ie~yl~~~ 104 (106)
|+|+.+++++..|+|+||+||++|
T Consensus 128 ~~p~~~~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 128 PPPEKYLDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcC
Confidence 889999999999999999999987
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=99.96 E-value=5.1e-28 Score=163.19 Aligned_cols=103 Identities=32% Similarity=0.590 Sum_probs=95.7
Q ss_pred CCCCeEEEEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCcccC-ceeEEEEEEEEEecCCCceEEEEEEEEEeCCCCC
Q 034001 2 GKPGTVITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLLD-KYNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDV 80 (106)
Q Consensus 2 g~~Gsvr~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~-~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~~ 80 (106)
|++||||.|+|.+++++..+||||+++|+++|+++|++++|+++. .|++|+++++|.|.++++|+++|+++|++.++++
T Consensus 45 ~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~ 124 (148)
T cd07816 45 GGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAE 124 (148)
T ss_pred CCCceEEEEEEcCCCcceEEEEEEEEEcccccEEEEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCC
Confidence 689999999998666667899999999999999999999999975 6999999999999988899999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCC
Q 034001 81 PDPQGIVNLAIEMTKGIEAHHPPK 104 (106)
Q Consensus 81 ~~p~~~~~~~~~~~k~ie~yl~~~ 104 (106)
++|+.+++.+..+++++++|++.+
T Consensus 125 ~~p~~~~~~~~~~~~~~~~~~~~~ 148 (148)
T cd07816 125 PPEEEIKAGKEKALKMFKAVEAYL 148 (148)
T ss_pred CCHHHHHhHHHHHHHHHHHHHhcC
Confidence 999999999999999999998753
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.05 E-value=9.8e-09 Score=66.30 Aligned_cols=93 Identities=22% Similarity=0.402 Sum_probs=71.1
Q ss_pred CCCeEEEEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCCCCCCC
Q 034001 3 KPGTVITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDVPD 82 (106)
Q Consensus 3 ~~Gsvr~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~~~~ 82 (106)
++|+++.+.+. +| ..+++++..+|+.++.++|++.+|+. .+.++.+++++.|.++|+|+++|+..|+.... .+.
T Consensus 44 ~~g~~~~~~~~-~g--~~~~~~i~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~ 117 (140)
T cd07821 44 GVGAVRTVTLK-DG--GTVRERLLALDDAERRYSYRIVEGPL--PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTD 117 (140)
T ss_pred CCCeEEEEEeC-CC--CEEEEEehhcCccCCEEEEEecCCCC--CcccceEEEEEEECCCCccEEEEEEEEecCCC-cch
Confidence 37999999997 55 57889999999988899999998743 46788899999998887899999999998865 222
Q ss_pred hh---hHHHHHHHHHHHHHhcC
Q 034001 83 PQ---GIVNLAIEMTKGIEAHH 101 (106)
Q Consensus 83 p~---~~~~~~~~~~k~ie~yl 101 (106)
+. ...+.....++.|.++|
T Consensus 118 ~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 118 ELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 21 12344556666666654
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=98.38 E-value=5e-05 Score=48.74 Aligned_cols=66 Identities=26% Similarity=0.391 Sum_probs=52.4
Q ss_pred CCCCeEEEEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEe
Q 034001 2 GKPGTVITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEK 75 (106)
Q Consensus 2 g~~Gsvr~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~ 75 (106)
|++|..+.+... |. ..+.+++..++++.+.+.|++.. ..+..+..++++.|.++| |+++|+.+|+.
T Consensus 43 ~~~~~~~~~~~~--g~-~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~ 108 (139)
T PF10604_consen 43 GGPGTERTVRVA--GR-GTVREEITEYDPEPRRITWRFVP----SGFTNGTGRWRFEPVGDG-TRVTWTVEFEP 108 (139)
T ss_dssp CSTEEEEEEEEC--SC-SEEEEEEEEEETTTTEEEEEEES----SSSCEEEEEEEEEEETTT-EEEEEEEEEEE
T ss_pred cccceeEEEEec--cc-cceeEEEEEecCCCcEEEEEEEe----cceeEEEEEEEEEEcCCC-EEEEEEEEEEE
Confidence 455555666654 32 57899999999889999999961 235688999999999865 99999999997
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.19 E-value=6.9e-05 Score=48.94 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=52.9
Q ss_pred EEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCC-CceEEEEEEEEEeCCCCCCChhhH-----HHHHHHHH
Q 034001 21 AKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGE-HSCLARWTIKYEKKSEDVPDPQGI-----VNLAIEMT 94 (106)
Q Consensus 21 ~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~-g~s~v~W~~~ye~~~~~~~~p~~~-----~~~~~~~~ 94 (106)
+..++.+.++..+.+.|++++|+ +..|.+++++.|.++ |+|+++|.+.+++... .|..+ .+....++
T Consensus 63 v~~~~~~~~~~~~~i~~~~~~g~----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~---~p~~l~~~~~~~~~~~~l 135 (144)
T cd08866 63 VVLELREREEFPRELDFEMVEGD----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF---APVFLVEFVLRQDLPTNL 135 (144)
T ss_pred EEEEEEEecCCCceEEEEEcCCc----hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC---CCHHHHHHHHHHHHHHHH
Confidence 44556667767899999999886 468899999999988 6899999999998752 23222 23344566
Q ss_pred HHHHhc
Q 034001 95 KGIEAH 100 (106)
Q Consensus 95 k~ie~y 100 (106)
++|.+.
T Consensus 136 ~~lr~~ 141 (144)
T cd08866 136 LAIRAE 141 (144)
T ss_pred HHHHHH
Confidence 665543
No 6
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.95 E-value=0.00052 Score=43.84 Aligned_cols=66 Identities=21% Similarity=0.159 Sum_probs=50.4
Q ss_pred CCCeEEEEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEe
Q 034001 3 KPGTVITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEK 75 (106)
Q Consensus 3 ~~Gsvr~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~ 75 (106)
++|+...+.....|....++++++.+| .++.+.|....|.+ .+..++++.|.++ +|.++|+.+|+.
T Consensus 43 ~~g~~~~~~~~~~g~~~~~~~~v~~~~-p~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~t~v~~~~~~~~ 108 (140)
T cd08865 43 GVGTRYHQVRKFLGRRIELTYEITEYE-PGRRVVFRGSSGPF-----PYEDTYTFEPVGG-GTRVRYTAELEP 108 (140)
T ss_pred cCccEEEEEEEecCceEEEEEEEEEec-CCcEEEEEecCCCc-----ceEEEEEEEEcCC-ceEEEEEEEEcc
Confidence 468888887654443456789999887 55889999876533 3678999999765 699999999996
No 7
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.89 E-value=0.0014 Score=42.52 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=49.6
Q ss_pred EEEEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCCC
Q 034001 7 VITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSE 78 (106)
Q Consensus 7 vr~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~ 78 (106)
++.+....+|....+ +....+|++.+.+.|..+++.. .+..+.++++|.|.++++|.|+|..+|+....
T Consensus 45 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~~~~~~~--~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~ 113 (142)
T cd08861 45 LRMWATAFDGSVHTW-TSRRVLDPEGRRIVFRQEEPPP--PVASMSGEWRFEPLGGGGTRVTLRHDFTLGID 113 (142)
T ss_pred EEEEEEcCCCcEEEE-EEEEEEcCCCCEEEEEEeeCCC--ChhhheeEEEEEECCCCcEEEEEEEEEEECCC
Confidence 444455433422333 4445688889999999987533 35788899999999877899999999998743
No 8
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=97.81 E-value=0.001 Score=43.32 Aligned_cols=87 Identities=17% Similarity=0.272 Sum_probs=58.3
Q ss_pred eEEEEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCCCCCCChhh
Q 034001 6 TVITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDVPDPQG 85 (106)
Q Consensus 6 svr~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~~~~p~~ 85 (106)
....++.+..+....+..++. +++ .+++.+..++|. ++.+.+++++.|.++|+|+++|.+.|++.+. .|..
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~~g~----~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~---l~~~ 114 (138)
T cd07813 44 LEAELTVGFGGIRESFTSRVT-LVP-PESIEAELVDGP----FKHLEGEWRFKPLGENACKVEFDLEFEFKSR---LLEA 114 (138)
T ss_pred EEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEecCCC----hhhceeEEEEEECCCCCEEEEEEEEEEECCH---HHHH
Confidence 334454443443344555655 665 778899988884 4678899999999888999999999998742 2332
Q ss_pred H-----HHHHHHHHHHHHhcC
Q 034001 86 I-----VNLAIEMTKGIEAHH 101 (106)
Q Consensus 86 ~-----~~~~~~~~k~ie~yl 101 (106)
+ .+...++++++.+.+
T Consensus 115 l~~~~~~~~~~~~l~~f~~~~ 135 (138)
T cd07813 115 LAGLVFDEVAKKMVDAFEKRA 135 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 2 244556666666544
No 9
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.66 E-value=0.0046 Score=39.45 Aligned_cols=70 Identities=10% Similarity=0.012 Sum_probs=51.5
Q ss_pred CCCeEEEEEEecC-CeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEe
Q 034001 3 KPGTVITWTYKHD-GVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEK 75 (106)
Q Consensus 3 ~~Gsvr~~~~~~~-g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~ 75 (106)
++|+...+.+..+ +....+.+++.++|+ .+.+.|+...++.. ......++.|.|.++++|+++|...|..
T Consensus 41 ~~G~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~T~~~~~~~~~g 111 (141)
T cd07822 41 ALGARLRFVVKLPGGPPRSFKPRVTEVEP-PRRLAWRGGLPFPG--LLDGEHSFELEPLGDGGTRFVHRETFSG 111 (141)
T ss_pred CCCCEEEEEEeCCCCCcEEEEEEEEEEcC-CCEeEEEecCCCCc--EeeEEEEEEEEEcCCCcEEEEEeeEEEE
Confidence 5788888887632 234567888998877 56889998766531 2345678899998667899999988764
No 10
>PRK10724 hypothetical protein; Provisional
Probab=97.53 E-value=0.0023 Score=43.68 Aligned_cols=83 Identities=11% Similarity=0.230 Sum_probs=55.6
Q ss_pred EEEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCCCCCCChhhH-
Q 034001 8 ITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDVPDPQGI- 86 (106)
Q Consensus 8 r~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~~~~p~~~- 86 (106)
..++.+.+|-...+..|.. +++. +++.+.+++|+ ++.+.+.+++.|.++++|.|++.++|+-.+. -+..+
T Consensus 62 a~l~v~~~g~~~~f~srv~-~~~~-~~I~~~~~~Gp----F~~l~g~W~f~p~~~~~t~V~~~l~fef~s~---l~~~~~ 132 (158)
T PRK10724 62 AAVDVSKAGISKTFTTRNQ-LTSN-QSILMQLVDGP----FKKLIGGWKFTPLSQEACRIEFHLDFEFTNK---LIELAF 132 (158)
T ss_pred EEEEEeeCCccEEEEEEEE-ecCC-CEEEEEecCCC----hhhccceEEEEECCCCCEEEEEEEEEEEchH---HHHHHH
Confidence 3344443443456666755 4443 48999999985 5789999999999877899999999996532 22222
Q ss_pred ----HHHHHHHHHHHHh
Q 034001 87 ----VNLAIEMTKGIEA 99 (106)
Q Consensus 87 ----~~~~~~~~k~ie~ 99 (106)
.+.+..|.+++++
T Consensus 133 ~~~~~~~~~~mv~AF~~ 149 (158)
T PRK10724 133 GRVFKELASNMVQAFTV 149 (158)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3445566666654
No 11
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.50 E-value=0.0043 Score=40.34 Aligned_cols=96 Identities=8% Similarity=-0.034 Sum_probs=59.6
Q ss_pred CCCeEEEEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCCCCC--
Q 034001 3 KPGTVITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDV-- 80 (106)
Q Consensus 3 ~~Gsvr~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~~-- 80 (106)
++|+..++.....|....+..++..+++ .+.++|+..-.+. .......++.+.|.++|+|+++++..|.......
T Consensus 45 ~~G~~~~~~~~~~g~~~~~~~~v~~~~p-~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~ 121 (144)
T cd07825 45 AVGDVFRMAMRLDGGPYRITNHVVAFEE-NRLIAWRPGPAGQ--EPGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKEL 121 (144)
T ss_pred CCCCEEEEEEEcCCCceEEEEEEEEECC-CCEEEEEccCCCC--CCCceeEEEEEEECCCCcEEEEEEEeccCChhhhhc
Confidence 5688777777533333456677887766 4558998541111 1223456888999887889999999888653311
Q ss_pred C-ChhhHHHHHHHHHHHHHhcC
Q 034001 81 P-DPQGIVNLAIEMTKGIEAHH 101 (106)
Q Consensus 81 ~-~p~~~~~~~~~~~k~ie~yl 101 (106)
+ ............+..|++|+
T Consensus 122 ~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 122 LGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred cccCCCCHHHHHHHHHHHHHHh
Confidence 1 11223445566777777765
No 12
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.45 E-value=0.0092 Score=36.84 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=45.2
Q ss_pred eEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCCC
Q 034001 19 EIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSE 78 (106)
Q Consensus 19 ~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~ 78 (106)
.....++..+++ +..++|+...++.. ..+..++.+.+.++++|.++|+..+.....
T Consensus 58 ~~~~~~v~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~ 113 (141)
T cd07812 58 LTLTSEVTEVDP-PRPGRFRVTGGGGG---VDGTGEWRLEPEGDGGTRVTYTVEYDPPGP 113 (141)
T ss_pred ccceEEEEEecC-CCceEEEEecCCCC---cceeEEEEEEECCCCcEEEEEEEEEecCCc
Confidence 457788888877 77899998877653 577889999998765899999999997654
No 13
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.36 E-value=0.015 Score=37.22 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=35.8
Q ss_pred CCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCC
Q 034001 32 KNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKS 77 (106)
Q Consensus 32 ~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~ 77 (106)
.+.++|+..+|. ...++.+++++.|.++ +|.++|+..++...
T Consensus 73 ~~~i~~~~~~~~---~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~ 114 (140)
T cd07819 73 AGSVSWTLVEGE---GNRSQEGSYTLTPKGD-GTRVTFDLTVELTV 114 (140)
T ss_pred CCcEEEEEeccc---ceeEEEEEEEEEECCC-CEEEEEEEEEEecC
Confidence 678999998875 3567889999999877 79999999999755
No 14
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.05 E-value=0.016 Score=37.71 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=49.2
Q ss_pred CCeEEEEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEe
Q 034001 4 PGTVITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEK 75 (106)
Q Consensus 4 ~Gsvr~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~ 75 (106)
+|+.-.+.+...+....++-+++.+++ .+.+++..+.|++ .++..+..+.|.++ ||.++++++|+.
T Consensus 46 ~G~~~~~~~~~~~~~~~w~~~it~~~p-~~~f~~~~~~G~~----~~w~h~~~f~~~~~-gT~vt~~v~~~~ 111 (137)
T cd07820 46 GGARVTYRLRHFGIPQRWTTEITEVEP-PRRFVDEQVSGPF----RSWRHTHRFEAIGG-GTLMTDRVEYRL 111 (137)
T ss_pred CCcEEEEEEEecCCceEEEEEEEEEcC-CCeEEEEeccCCc----hhCEEEEEEEECCC-ceEEEEEEEEeC
Confidence 477778888744433467777777654 5569999887753 56677888888766 799999999995
No 15
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=97.00 E-value=0.021 Score=36.44 Aligned_cols=69 Identities=14% Similarity=0.000 Sum_probs=48.8
Q ss_pred CeEEEEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeC
Q 034001 5 GTVITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKK 76 (106)
Q Consensus 5 Gsvr~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~ 76 (106)
|+.+.+....+|....+..++..+|+. +.+.|+...++. ...-....++.|.|.+ ++|.++|+..+...
T Consensus 43 g~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~~~~~~~-~~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~ 111 (139)
T cd07814 43 GRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFTWAFSDE-TPGPETTVTVTLEETG-GGTRLTLTHSGFPE 111 (139)
T ss_pred ceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEEecccCC-CCCCceEEEEEEEECC-CCEEEEEEEEccCh
Confidence 666655544333345678889988855 689999887643 1123567888999987 57999999999865
No 16
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.97 E-value=0.037 Score=36.18 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=46.4
Q ss_pred CCCeEEEEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCC
Q 034001 3 KPGTVITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKS 77 (106)
Q Consensus 3 ~~Gsvr~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~ 77 (106)
++|+...++.. .+ ......++..+++ ++.+.|++..++.+. .+...++.+.|. ++||.++|+.+|+...
T Consensus 50 ~~G~~~~~~~~-~~-~~~~~~~v~~~~p-~~~i~~~~~~~~~~~--~~~~~~~~~~~~-~~gT~v~~~~~~~~~~ 118 (150)
T cd07818 50 GVGASYSWEGN-DK-VGEGEMEITESVP-NERIEYELRFIKPFE--ATNDVEFTLEPV-GGGTKVTWGMSGELPF 118 (150)
T ss_pred CCCeEEEEecC-Cc-ccceEEEEEecCC-CcEEEEEEEecCCcc--ccceEEEEEEEc-CCceEEEEEEEecCCc
Confidence 56777666655 21 1223456666654 677999987543211 366899999999 4579999999999543
No 17
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=96.34 E-value=0.13 Score=32.70 Aligned_cols=64 Identities=9% Similarity=-0.115 Sum_probs=43.1
Q ss_pred CCCeEEEEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEe
Q 034001 3 KPGTVITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEK 75 (106)
Q Consensus 3 ~~Gsvr~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~ 75 (106)
++|+...++.. .+ ..+..+|.++++. +.++++.... ...+..++++.|.++++|+++|+.+|..
T Consensus 44 ~~G~~~~~~~~-~~--~~~~~~i~~~~p~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~t~l~~~~~~~~ 107 (138)
T cd08862 44 AVGSSFKMKPP-GL--VRSTFTVTELRPG-HSFTWTGPAP-----GISAVHRHEFEAKPDGGVRVTTSESLSG 107 (138)
T ss_pred CCCcEEEEecC-CC--CceEEEEEEecCC-CEEEEEecCC-----CEEEEEEEEEEEcCCCcEEEEEEEEeec
Confidence 45665555543 22 4566788888754 5688875432 1345678899998767899999998874
No 18
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.14 E-value=0.17 Score=32.17 Aligned_cols=56 Identities=20% Similarity=0.193 Sum_probs=41.0
Q ss_pred CeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCC
Q 034001 16 GVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKS 77 (106)
Q Consensus 16 g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~ 77 (106)
|....+..++..+++ ++.+.|....|. + .+.+++.+.|.++++|.+++++.|++..
T Consensus 52 g~~~~~~~~v~~~~~-~~~i~~~~~~~~----~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~ 107 (139)
T cd07817 52 GLSVEWDAEITEQVP-NERIAWRSVEGA----D-PNAGSVRFRPAPGRGTRVTLTIEYEPPG 107 (139)
T ss_pred CCcEEEEEEEeccCC-CCEEEEEECCCC----C-CcceEEEEEECCCCCeEEEEEEEEECCc
Confidence 544566777765544 556999876654 2 4568888999877789999999999664
No 19
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=95.74 E-value=0.28 Score=31.31 Aligned_cols=54 Identities=13% Similarity=0.017 Sum_probs=37.7
Q ss_pred EEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCCC
Q 034001 22 KEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSE 78 (106)
Q Consensus 22 kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~ 78 (106)
.-++..+|+. +.+.++....+. .....+..++.+.|. +++|.++|+++|+..+.
T Consensus 62 ~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~ 115 (144)
T cd05018 62 KVELSDLDPP-ESYTITGEGKGG-AGFVKGTARVTLEPD-GGGTRLTYTADAQVGGK 115 (144)
T ss_pred EEEEEecCCC-cEEEEEEEEcCC-CceEEEEEEEEEEec-CCcEEEEEEEEEEEccC
Confidence 4455555543 567777654222 125688999999998 66899999999997653
No 20
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.89 E-value=0.54 Score=30.75 Aligned_cols=54 Identities=9% Similarity=0.022 Sum_probs=34.3
Q ss_pred EEEEEeCCCCEEEEEEEeCccc-CceeEEEEEEEEEecCCCceEEEEEEEEEeCCC
Q 034001 24 IIEEIDDEKNSTTFKVIEGHLL-DKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSE 78 (106)
Q Consensus 24 rl~~~D~~~~~~~y~iieg~~~-~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~ 78 (106)
++..+++..+.+.++.-..+.. ..--....++++.| .+++|+++|+++++..+.
T Consensus 62 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~ 116 (146)
T cd07823 62 RLLEDDEAARRAVLEATGKDARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTGK 116 (146)
T ss_pred EEEeccCCCcEEEEEEEEecCCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeE
Confidence 4555555788888775431110 11114667888888 456899999999986553
No 21
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=94.67 E-value=0.8 Score=30.50 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=40.9
Q ss_pred CCeeeEEEEEEEEEeCCCCEEEEE-EEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCCCC
Q 034001 15 DGVTEIAKEIIEEIDDEKNSTTFK-VIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSED 79 (106)
Q Consensus 15 ~g~~~~~kErl~~~D~~~~~~~y~-iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~ 79 (106)
+|....+.-+.. +|+..+++.++ ...| ++....++++|.|.++ ||.|++..+|+-.+..
T Consensus 57 ~g~~~~w~s~~~-~~~~~~~i~~~~~~~~----p~~~m~~~W~f~~~~~-gT~V~~~~~~~~~~~~ 116 (146)
T cd08860 57 NGTVWSWVSERT-LDPVNRTVRARRVETG----PFAYMNIRWEYTEVPE-GTRMRWVQDFEMKPGA 116 (146)
T ss_pred CCEEEEEEEEEE-ecCCCcEEEEEEecCC----CcceeeeeEEEEECCC-CEEEEEEEEEEECCCC
Confidence 443344432322 78888888874 2333 3678889999999866 4999999999977543
No 22
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.19 E-value=0.97 Score=29.51 Aligned_cols=50 Identities=12% Similarity=0.144 Sum_probs=34.6
Q ss_pred EEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCC
Q 034001 20 IAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKS 77 (106)
Q Consensus 20 ~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~ 77 (106)
.+.-++..+ +..+.+.++. +|++ + ...+++|.|.++ ||.++++.+++..+
T Consensus 64 ~~~~~v~~~-~p~~~~~~~~-~g~~----~-~~~~~~~~~~~~-gt~vt~~~~~~~~~ 113 (146)
T cd07824 64 RFELRVTRI-EPLSLLEVRA-SGDL----E-GVGRWTLAPDGS-GTVVRYDWEVRTTK 113 (146)
T ss_pred EEEEEEEee-cCCcEEEEEE-EEee----e-EEEEEEEEEcCC-CEEEEEEEEEEcCH
Confidence 344455554 4566888885 5653 2 257889999655 69999999999654
No 23
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=94.16 E-value=0.25 Score=33.47 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=41.4
Q ss_pred EEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCCC
Q 034001 20 IAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSE 78 (106)
Q Consensus 20 ~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~ 78 (106)
++.-|.. +++..++|.-++++|+ ++...+++++.|-++++|.|+..++|+-.+.
T Consensus 61 ~F~Trv~-~~~~~~~I~~~l~~GP----Fk~L~~~W~F~pl~~~~ckV~f~ldfeF~s~ 114 (146)
T COG2867 61 TFTTRVT-LKPTARSIDMKLIDGP----FKYLKGGWQFTPLSEDACKVEFFLDFEFKSR 114 (146)
T ss_pred eeeeeee-ecCchhhhhhhhhcCC----hhhhcCceEEEECCCCceEEEEEEEeeehhH
Confidence 3444433 5566668888888886 5778899999998778999999999997643
No 24
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=93.96 E-value=0.95 Score=28.59 Aligned_cols=71 Identities=25% Similarity=0.347 Sum_probs=44.8
Q ss_pred EEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCC--CceEEEEEEEEEeCCCCCCChhhH
Q 034001 9 TWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGE--HSCLARWTIKYEKKSEDVPDPQGI 86 (106)
Q Consensus 9 ~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~--g~s~v~W~~~ye~~~~~~~~p~~~ 86 (106)
.+.....+....+..++....+.. +.+..++|+ ++.+.+++++.|.++ |+|.++++.+|+.... .+.|..+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~----~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~-~~~~~~~ 113 (130)
T PF03364_consen 41 RWEVKFGGIKRSWTSRVTEDPPER--IRFEQISGP----FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPP-GPLPGFL 113 (130)
T ss_dssp EEEECTTTTCEEEEEEEEEECTTT--EEEESSETT----EEEEEEEEEEEEETTECCEEEEEEEEEEEEETS-SSSHHHH
T ss_pred EEEEecCCEEEEEEEEEEEEEeee--eeeeecCCC----chhcEEEEEEEECCCCcCCCEEEEEEEEEEecC-cHhHHHH
Confidence 344443333356677766444444 777777775 689999999999875 3577777777776332 2345444
No 25
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=92.87 E-value=1.9 Score=28.70 Aligned_cols=90 Identities=13% Similarity=0.011 Sum_probs=51.4
Q ss_pred CCeEEEEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCCCCCCCh
Q 034001 4 PGTVITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDVPDP 83 (106)
Q Consensus 4 ~Gsvr~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~~~~p 83 (106)
+|...++.+...+ .....-++.++|+. +.+.|+...++. ....+++|.+.+ ++|.++.+..+.... ...
T Consensus 49 ~G~~~~~~~~~~~-~~~~~~~v~e~~p~-~~l~~~~~~~~~-----~~~~~~~l~~~~-~gT~v~~~~~~~~~~---~~~ 117 (157)
T cd08899 49 VGGRVEFVMDDEE-GPNATGTILACEPP-RLLAFTWGEGGG-----ESEVRFELAPEG-DGTRLTLTHRLLDER---FGA 117 (157)
T ss_pred cCceEEEEecCCC-CCccceEEEEEcCC-cEEEEEecCCCC-----CceEEEEEEEcC-CCEEEEEEEeccCch---hhh
Confidence 5666666665211 13456677777555 677888754441 225677788765 579888887776433 112
Q ss_pred hhHHHHHHHHHHHHHhcCCCC
Q 034001 84 QGIVNLAIEMTKGIEAHHPPK 104 (106)
Q Consensus 84 ~~~~~~~~~~~k~ie~yl~~~ 104 (106)
......-..++..|.+||-..
T Consensus 118 ~~~~~GW~~~L~~Lk~~~e~~ 138 (157)
T cd08899 118 GAVGAGWHLCLDVLEAALEGG 138 (157)
T ss_pred hhhcccHHHHHHHHHHHHcCC
Confidence 222333445566666665443
No 26
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=92.55 E-value=0.88 Score=30.86 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=41.3
Q ss_pred EEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCC
Q 034001 22 KEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKS 77 (106)
Q Consensus 22 kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~ 77 (106)
+=++..+|+..++++...-.|.. ..+-..++.+.++|.+++ |++.|.+.-+-..
T Consensus 61 ~~~~~~v~~~~~~~~i~g~G~~~-~g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg 114 (146)
T COG3427 61 RVRFVNVDEPPRSITINGSGGGA-AGFADGTVDVQLEPSGEG-TRVNWFADANVGG 114 (146)
T ss_pred EEEEccccCCCcEEEEEeecccc-cceeeeeeEEEEEEcCCC-cEEEEEEEccccH
Confidence 44666678889998888765333 346778889999998876 9999999988653
No 27
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=91.91 E-value=2.4 Score=27.74 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=34.1
Q ss_pred EEEEEEEeCCCCE-EEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCCC
Q 034001 22 KEIIEEIDDEKNS-TTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSE 78 (106)
Q Consensus 22 kErl~~~D~~~~~-~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~ 78 (106)
+=++..+|+.++. +..+.-+... -.+..+.+++...++++|.+.|+++++-.+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~g~~~---~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~ 111 (140)
T PF06240_consen 57 EVRITEIDPPESYTLEFEGRGRGG---GSSASANITLSLEDDGGTRVTWSADVEVGGP 111 (140)
T ss_dssp EEEEEEEETTTEEEEEEEEEECTC---CEEEEEEEEEEECCCTCEEEEEEEEEEEECH
T ss_pred EEEEEEcCCCcceEeeeeccCCcc---ceEEEEEEEEEcCCCCCcEEEEEEEEEEccC
Confidence 4456667777765 4444333221 2455666777666555699999999996643
No 28
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=90.09 E-value=3.6 Score=26.55 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=38.3
Q ss_pred EEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCCCCCCChh-------hHHHHHHHHHHH
Q 034001 24 IIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDVPDPQ-------GIVNLAIEMTKG 96 (106)
Q Consensus 24 rl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~~~~p~-------~~~~~~~~~~k~ 96 (106)
++.+++ .++.+.|+...++. ....++++.|.+ ++|+++.+..|.. ++. ...+.-..++..
T Consensus 66 ~v~e~~-p~~~l~~t~~~~~~-----~~~v~~~~~~~~-~gT~ltl~~~~~~------~~~~~~~~~~~~~~Gw~~~l~~ 132 (139)
T cd08894 66 VFLEIE-PPERIVYDHGSGPP-----RFRLTVTFEEQG-GKTRLTWRQVFPT------AAERCEKIKFGAVEGNEQTLDR 132 (139)
T ss_pred EEEEEc-CCCEEEEEeccCCC-----cEEEEEEEEECC-CCEEEEEEEEcCC------HHHHHHHHHhCHHHHHHHHHHH
Confidence 566664 45567777633321 235788888875 6799888865431 111 112334566777
Q ss_pred HHhcCC
Q 034001 97 IEAHHP 102 (106)
Q Consensus 97 ie~yl~ 102 (106)
|++||.
T Consensus 133 L~~~l~ 138 (139)
T cd08894 133 LAAYLA 138 (139)
T ss_pred HHHHHh
Confidence 777763
No 29
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=77.68 E-value=15 Score=23.22 Aligned_cols=80 Identities=13% Similarity=-0.053 Sum_probs=43.0
Q ss_pred EEEEEEEEeCCCCEEEEEEEeCc----cc-CceeEEEEEEEEEecCCCceEEEEEEE-EEeCCCCCC--ChhhHHHHHHH
Q 034001 21 AKEIIEEIDDEKNSTTFKVIEGH----LL-DKYNSFYVTVQAIPKGEHSCLARWTIK-YEKKSEDVP--DPQGIVNLAIE 92 (106)
Q Consensus 21 ~kErl~~~D~~~~~~~y~iieg~----~~-~~~~~~~~t~~v~p~~~g~s~v~W~~~-ye~~~~~~~--~p~~~~~~~~~ 92 (106)
..=++..+ +..+.+.|+...+. .. ..-.....+++|.+.+ ++|+++++-. |...+++.. ......+.-..
T Consensus 57 ~~~~i~~~-~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~ 134 (145)
T cd08898 57 FPVTVVEV-DPPRRFSFRWHPPAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTESGFDALPAERRAEAYRMNEGGWDE 134 (145)
T ss_pred eEEEEEEe-CCCcEEEEEecCCCcccccccCCCCceEEEEEEEecC-CcEEEEEEEcCCCCCChHHHHHHHHhhhhhHHH
Confidence 33456656 45566777754332 10 0112345788888876 4699998876 432211100 01122344567
Q ss_pred HHHHHHhcCC
Q 034001 93 MTKGIEAHHP 102 (106)
Q Consensus 93 ~~k~ie~yl~ 102 (106)
++..|++||-
T Consensus 135 ~l~~L~~~le 144 (145)
T cd08898 135 QLENLVAYVE 144 (145)
T ss_pred HHHHHHHHhc
Confidence 7778888774
No 30
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=75.71 E-value=16 Score=22.44 Aligned_cols=91 Identities=13% Similarity=0.003 Sum_probs=47.6
Q ss_pred CCeEEEEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCCCCCCCh
Q 034001 4 PGTVITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDVPDP 83 (106)
Q Consensus 4 ~Gsvr~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~~~~p 83 (106)
+|..-++ ..++|......=++.++++.++ +.|+.--++..+ -.....++.|.+ .+++|+++.+..-.+... ..
T Consensus 32 ~Gg~~~~-~~~~g~~~~~~~~v~~~~p~~~-i~~~~~~~~~~~-~~~~~v~~~~~~-~~~~T~l~~~~~~~~~~~---~~ 104 (124)
T PF08327_consen 32 PGGSFRF-MDPDGGEFGFDGTVLEVEPPER-IVFTWRMPDDPD-GPESRVTFEFEE-EGGGTRLTLTHSGFPDDD---EE 104 (124)
T ss_dssp TTEEEEE-EETTSEEEEEEEEEEEEETTTE-EEEEEEEETSSS-CEEEEEEEEEEE-ETTEEEEEEEEEEEHSHH---HH
T ss_pred cCCEEEE-EecCCCCceeeEEEEEEeCCEE-EEEEEEccCCCC-CCceEEEEEEEE-cCCcEEEEEEEEcCCccH---HH
Confidence 4554444 2345543334435777866544 777754333221 234477888989 556788877763331110 01
Q ss_pred hh-HHHHHHHHHHHHHhcC
Q 034001 84 QG-IVNLAIEMTKGIEAHH 101 (106)
Q Consensus 84 ~~-~~~~~~~~~k~ie~yl 101 (106)
.. .......++..|.+||
T Consensus 105 ~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 105 EEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp HHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 11 3344556666666664
No 31
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=70.88 E-value=26 Score=22.74 Aligned_cols=76 Identities=9% Similarity=-0.056 Sum_probs=38.6
Q ss_pred EEEEEeCCCCEEEEEEE-eCcc--cCceeEEEEEEEEEecCCCceEEEEEEEEEeCCCC-CCChh---hHHHHHHHHHHH
Q 034001 24 IIEEIDDEKNSTTFKVI-EGHL--LDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSED-VPDPQ---GIVNLAIEMTKG 96 (106)
Q Consensus 24 rl~~~D~~~~~~~y~ii-eg~~--~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~-~~~p~---~~~~~~~~~~k~ 96 (106)
++.++++ .++++|+-. ..+. .... .-..+++++|.++++|+++.+-.......+ ..... .....-..++..
T Consensus 65 ~v~~v~p-~~~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~ 142 (149)
T cd08891 65 TVLAWEP-PSRLVFTWQINADWRPDPDK-ASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLER 142 (149)
T ss_pred EEEEEcC-CCEEEEEeccCCCcCcCCCC-ceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHH
Confidence 4566654 445556643 2111 1111 235788999976467988877776533210 00111 112233456677
Q ss_pred HHhcC
Q 034001 97 IEAHH 101 (106)
Q Consensus 97 ie~yl 101 (106)
|++||
T Consensus 143 L~~~l 147 (149)
T cd08891 143 YAAAA 147 (149)
T ss_pred HHHHh
Confidence 77765
No 32
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=68.66 E-value=29 Score=22.43 Aligned_cols=75 Identities=16% Similarity=0.055 Sum_probs=38.2
Q ss_pred EEEEEEeCCCCEEEEEEE-eCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCCCCC-CChhhHHHHHHHHHHHHHhc
Q 034001 23 EIIEEIDDEKNSTTFKVI-EGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDV-PDPQGIVNLAIEMTKGIEAH 100 (106)
Q Consensus 23 Erl~~~D~~~~~~~y~ii-eg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~~-~~p~~~~~~~~~~~k~ie~y 100 (106)
=++.++++ .+++.|+-- ++.- . .....++++.+.+ ++|+++.+..|....... ..-....+.-..++..|++|
T Consensus 65 g~~~ei~p-~~~l~~t~~~~~~~-~--~~s~v~~~l~~~~-~gT~l~l~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~ 139 (142)
T cd07826 65 GVYHEVTP-PERIVQTEEFEGLP-D--GVALETVTFTELG-GRTRLTATSRYPSKEARDGVLASGMEEGMEESYDRLDEL 139 (142)
T ss_pred EEEEEEcC-CCEEEEEeEecCCC-C--CceEEEEEEEECC-CCEEEEEEEEeCCHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 35555644 344555432 2211 1 2336688888875 579988876653110000 00011123456778888888
Q ss_pred CC
Q 034001 101 HP 102 (106)
Q Consensus 101 l~ 102 (106)
|.
T Consensus 140 l~ 141 (142)
T cd07826 140 LA 141 (142)
T ss_pred Hh
Confidence 75
No 33
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=66.43 E-value=32 Score=22.08 Aligned_cols=76 Identities=17% Similarity=0.156 Sum_probs=40.3
Q ss_pred EEEEEEEEeCCCCEEEEEE--EeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHH
Q 034001 21 AKEIIEEIDDEKNSTTFKV--IEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDVPDPQGIVNLAIEMTKGIE 98 (106)
Q Consensus 21 ~kErl~~~D~~~~~~~y~i--ieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie 98 (106)
..=++.++|+ .+++.|+- -.++.. -..-..++.|.|.+ ++|+++.+-..-..+.. .........-..++..|+
T Consensus 64 ~~g~~~~~~p-~~~l~~t~~~~~~~~~--~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~-~~~~~~~~GW~~~l~~L~ 138 (143)
T cd08900 64 VEARYHDIVP-DERIVYTYTMHIGGTL--LSASLATVEFAPEG-GGTRLTLTEQGAFLDGD-DDPAGREQGTAALLDNLA 138 (143)
T ss_pred eeEEEEEecC-CceEEEEEeeccCCcc--ccceEEEEEEEECC-CCEEEEEEEEEeccccc-chhhhHHHHHHHHHHHHH
Confidence 3445666654 45565553 222221 11234788888875 57988887765322211 112233344556677777
Q ss_pred hcC
Q 034001 99 AHH 101 (106)
Q Consensus 99 ~yl 101 (106)
+||
T Consensus 139 ~~l 141 (143)
T cd08900 139 AEL 141 (143)
T ss_pred HHH
Confidence 776
No 34
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=65.70 E-value=38 Score=24.65 Aligned_cols=57 Identities=7% Similarity=-0.101 Sum_probs=41.5
Q ss_pred eeEEEEEEEEEecCCCceEEEEEEEEEeCCCC--CCChhhHHHHHHHHHHHHHhcCCCC
Q 034001 48 YNSFYVTVQAIPKGEHSCLARWTIKYEKKSED--VPDPQGIVNLAIEMTKGIEAHHPPK 104 (106)
Q Consensus 48 ~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~--~~~p~~~~~~~~~~~k~ie~yl~~~ 104 (106)
...+.+-+.+.|.++++|.++.....++.--. .-.-.++-..+...|+.-+.||..|
T Consensus 177 ~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (235)
T cd08873 177 TEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVTCNLAGLSALYCRTFHCCEQFLVTN 235 (235)
T ss_pred EEEEeeeEEEEECCCCcEEEEEEEEcCCCccceeeecchhhhHHHHHHHHHHHHHhccC
Confidence 67788899999998889999988887765211 0112344566778889999998765
No 35
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=62.10 E-value=35 Score=21.13 Aligned_cols=77 Identities=12% Similarity=-0.036 Sum_probs=40.6
Q ss_pred EEEEEEEEeCCCCEEEEEEEeCccc--CceeEEEEEEEEEecCCCceEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHH
Q 034001 21 AKEIIEEIDDEKNSTTFKVIEGHLL--DKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDVPDPQGIVNLAIEMTKGIE 98 (106)
Q Consensus 21 ~kErl~~~D~~~~~~~y~iieg~~~--~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie 98 (106)
+.=++.+++ ..+.++|+...++.. ..-.....++.+.|.++ +|+++.+......+. ............+++.|.
T Consensus 56 ~~~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~~~~--~~~~~~~~gw~~~l~~Lk 131 (136)
T cd08893 56 VEGEVLESD-PPRRLVHTWRAVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFPPGS--PTLEGVSGGWPAILSSLK 131 (136)
T ss_pred cceEEEEec-CCCeEEEEEecCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCCCch--hHHHhhhcCHHHHHHHHH
Confidence 344566665 556677775433221 11224567788888755 676666555432211 112222344566777777
Q ss_pred hcC
Q 034001 99 AHH 101 (106)
Q Consensus 99 ~yl 101 (106)
+||
T Consensus 132 ~~~ 134 (136)
T cd08893 132 TLL 134 (136)
T ss_pred HHh
Confidence 765
No 36
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=59.28 E-value=45 Score=21.45 Aligned_cols=50 Identities=12% Similarity=-0.097 Sum_probs=27.9
Q ss_pred EEEEEEEecCCCceEEEEEEEEEeCCCCCC---ChhhHHHHHHH-HHHHHHhcC
Q 034001 52 YVTVQAIPKGEHSCLARWTIKYEKKSEDVP---DPQGIVNLAIE-MTKGIEAHH 101 (106)
Q Consensus 52 ~~t~~v~p~~~g~s~v~W~~~ye~~~~~~~---~p~~~~~~~~~-~~k~ie~yl 101 (106)
..++++.|.++++|+++.+..--+..+... ..+...+.-.. ++..|++||
T Consensus 73 ~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 73 KVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKIL 126 (132)
T ss_pred EEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHh
Confidence 578889887666898887776222211101 12222333344 577777765
No 37
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=57.40 E-value=24 Score=30.13 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=45.4
Q ss_pred eEEEEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEE----------EEecCCCceEEEEEEEEEe
Q 034001 6 TVITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQ----------AIPKGEHSCLARWTIKYEK 75 (106)
Q Consensus 6 svr~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~----------v~p~~~g~s~v~W~~~ye~ 75 (106)
||-.+.|+|+|. .|. +-..+|.+-|..-+|.++..++-++-++- +..++.+..++.|+-..|-
T Consensus 14 ci~d~afkPDGs------qL~-lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGT------QLI-LAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG 86 (1081)
T ss_pred chheeEECCCCc------eEE-EecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc
Confidence 778889999983 222 55788999999999998876777776652 2233334789999877653
No 38
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=53.88 E-value=57 Score=20.97 Aligned_cols=75 Identities=8% Similarity=-0.067 Sum_probs=38.4
Q ss_pred EEEEEEEeCCCCEEEEE--EEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCCCCCCChhhH-----HHHHHHHH
Q 034001 22 KEIIEEIDDEKNSTTFK--VIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDVPDPQGI-----VNLAIEMT 94 (106)
Q Consensus 22 kErl~~~D~~~~~~~y~--iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~~~~p~~~-----~~~~~~~~ 94 (106)
.=++.++|+. +++.|+ ..++.....-..-..+++++|.+ ++|+++.+..+... ...+.. .+.-..++
T Consensus 64 ~g~v~~i~p~-~~l~~t~~~~~~~~~~~~~~~~v~~~~~~~~-~gT~Ltl~~~~~~~----~~~~~~~~~~~~~GW~~~l 137 (146)
T cd08896 64 PGCFLEVVPG-ERLVFTDALTPGWRPAEKPFMTAIITFEDEG-GGTRYTARARHWTE----ADRKQHEEMGFHDGWGTAA 137 (146)
T ss_pred eEEEEEEeCC-CEEEEEEeecCCcCCCCCCcEEEEEEEEecC-CcEEEEEEEEeCCH----HHHHHHHHcCHHHHHHHHH
Confidence 4456767554 445555 32221111001135678888865 57888876543210 001111 24456777
Q ss_pred HHHHhcCC
Q 034001 95 KGIEAHHP 102 (106)
Q Consensus 95 k~ie~yl~ 102 (106)
..|++||.
T Consensus 138 ~~L~~~l~ 145 (146)
T cd08896 138 DQLAALAE 145 (146)
T ss_pred HHHHHHHh
Confidence 78888774
No 39
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=52.75 E-value=57 Score=20.61 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=38.2
Q ss_pred EEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCC
Q 034001 24 IIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAHHP 102 (106)
Q Consensus 24 rl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yl~ 102 (106)
++.++ +..+++.|+...+ ...++++.|.+ ++|+++.+ +...+. ...+.....-..++..|++||-
T Consensus 68 ~~~ei-~p~~~l~~~~~~~--------~~v~~~l~~~~-~gT~l~l~--~~~~~~--~~~~~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 68 TYTEV-EPHKLIEYTMEDG--------REVEVEFTEEG-DGTKVVET--FDAENE--NPVEMQRQGWQAILDNFKKYVE 132 (133)
T ss_pred EEEEE-CCCCEEEEEcCCC--------CEEEEEEEECC-CCEEEEEE--ECCCCC--CcHHHHHHHHHHHHHHHHHHhh
Confidence 44445 4466777775322 24688888875 57887764 443221 1233334555677788888874
No 40
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=52.18 E-value=82 Score=22.25 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=28.5
Q ss_pred eeEEEEEEEEEec---CCCceEEEEEEEEEeCCCCCCC
Q 034001 48 YNSFYVTVQAIPK---GEHSCLARWTIKYEKKSEDVPD 82 (106)
Q Consensus 48 ~~~~~~t~~v~p~---~~g~s~v~W~~~ye~~~~~~~~ 82 (106)
...+.+-+.+.|. ++|.|.++..+..++.+++.|.
T Consensus 145 ~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~ 182 (205)
T cd08874 145 GEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPA 182 (205)
T ss_pred eeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCH
Confidence 5567788899998 7778999999999998766654
No 41
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=51.72 E-value=86 Score=22.37 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=45.5
Q ss_pred EEEEe-cCCeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeC
Q 034001 9 TWTYK-HDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKK 76 (106)
Q Consensus 9 ~~~~~-~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~ 76 (106)
+|+.+ |.|..-++.-+|. -|..+..|.|.-++|.-++. ++.++|.+.++..|+|+.++.|-+-
T Consensus 114 rW~~~ap~g~~v~Wea~it-~d~~~e~I~W~Sl~Ga~v~N----sG~VrF~~~pg~~t~V~v~lsY~~P 177 (217)
T COG5637 114 RWKANAPLGLEVEWEAEIT-KDIPGERIQWESLPGARVEN----SGAVRFYDAPGDSTEVKVTLSYRPP 177 (217)
T ss_pred ceeEcCCCCceEEEeehhh-ccCCCcEEeeecCCCCcCCC----CccEEeeeCCCCceEEEEEEEecCC
Confidence 45554 2343345667766 58999999999999965421 5677888877778899999999853
No 42
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=51.08 E-value=23 Score=26.18 Aligned_cols=38 Identities=13% Similarity=0.075 Sum_probs=27.6
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCCCC
Q 034001 68 RWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAHHPPKQA 106 (106)
Q Consensus 68 ~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yl~~~~~ 106 (106)
.|.+.+++..+. ++.....+.+..+.+.+|+++.++|+
T Consensus 248 ~~~i~~~~~~~~-~~~~~~~~~t~~~n~~lE~~Ir~~Pe 285 (305)
T TIGR02208 248 KFELTVRPAMAT-ELSVDPEQEARAMNKEVEQFILPYPE 285 (305)
T ss_pred eEEEEEecCCCC-CCCCCHHHHHHHHHHHHHHHHHcCch
Confidence 477777654332 23455667889999999999999985
No 43
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=47.62 E-value=94 Score=21.61 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=33.8
Q ss_pred eeEEEEEEEEEecCCCceEEEEEEEEEeCCCCCCCh--hhH-HHHHHHHHHHHHh
Q 034001 48 YNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDVPDP--QGI-VNLAIEMTKGIEA 99 (106)
Q Consensus 48 ~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~~~~p--~~~-~~~~~~~~k~ie~ 99 (106)
...+.+-+.++|.++++|.+++.+..++.+.-.|.. ..+ ++..-.++..|.+
T Consensus 156 ~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~~l~k 210 (215)
T cd08877 156 RIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKSLLNFVARKFAGLLFEKIQK 210 (215)
T ss_pred EEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888999988899999999888765433332 111 2334455555544
No 44
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=45.76 E-value=31 Score=25.31 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=27.7
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCCCC
Q 034001 68 RWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAHHPPKQA 106 (106)
Q Consensus 68 ~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yl~~~~~ 106 (106)
.+.+.+++..... +.+...+.+..+.+.+|++++.+|+
T Consensus 238 ~y~i~~~~~~~~~-~~~~~~~~t~~~~~~lE~~Ir~~Pe 275 (295)
T PRK05645 238 GYKVILEAAPEDM-YSTDVEVSAAAMSKVVERYVRAYPS 275 (295)
T ss_pred eEEEEEecCCcCC-CCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 5777776543322 2345667889999999999999985
No 45
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=43.90 E-value=98 Score=20.75 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=27.1
Q ss_pred CCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEE
Q 034001 32 KNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYE 74 (106)
Q Consensus 32 ~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye 74 (106)
.....|.+.-.-.+..+..+...+++.|.+.+.|.+.|..-+.
T Consensus 81 ~~~~~~~iFPN~~i~~~~~~~~~~~~~P~~~~~t~~~~~~~~~ 123 (190)
T cd08885 81 RRLVLFAIFPTHLLALTPDYVWWLSLLPEGAGRVRVRWGVLVA 123 (190)
T ss_pred cceEEEEECCcEEEEecCCeEEEEEEEecCCCeEEEEEEEEEc
Confidence 3444555543322333455667888999988889888876544
No 46
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=43.59 E-value=34 Score=25.34 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=27.8
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCCCC
Q 034001 68 RWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAHHPPKQA 106 (106)
Q Consensus 68 ~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yl~~~~~ 106 (106)
.|.+.+++.... .+..++.+.+..+.+.+|+++.++|+
T Consensus 248 ~y~i~i~~~~~~-~~~~~i~~~t~~~~~~lE~~Ir~~P~ 285 (306)
T PRK08733 248 RYVLKIAPPLAD-FPSDDVIADTTRVNAAIEDMVREAPD 285 (306)
T ss_pred eEEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 477777654332 23456677899999999999999985
No 47
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=43.57 E-value=38 Score=18.16 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=9.4
Q ss_pred CeEEEEEEecC
Q 034001 5 GTVITWTYKHD 15 (106)
Q Consensus 5 Gsvr~~~~~~~ 15 (106)
|+||.++|.|+
T Consensus 1 GAvR~~kFsP~ 11 (43)
T PF10313_consen 1 GAVRCCKFSPE 11 (43)
T ss_pred CCeEEEEeCCC
Confidence 89999999854
No 48
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=43.41 E-value=35 Score=25.16 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=27.1
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCCCC
Q 034001 68 RWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAHHPPKQA 106 (106)
Q Consensus 68 ~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yl~~~~~ 106 (106)
.+.+.+++.... .+.+...+.+..+.+.+|+++.++|+
T Consensus 245 ~~~i~~~~~~~~-~~~~~~~~~t~~~~~~lE~~Ir~~P~ 282 (303)
T TIGR02207 245 GYRLKIDPPLDD-FPGDDEIAAAARMNKIVEKMIMRAPE 282 (303)
T ss_pred eEEEEEeCCCCC-CCCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 467777654332 22345567789999999999999985
No 49
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=41.03 E-value=1.1e+02 Score=20.65 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=25.8
Q ss_pred eeEEEEEEEEEecCCCceEEEEEEEEEeCCC
Q 034001 48 YNSFYVTVQAIPKGEHSCLARWTIKYEKKSE 78 (106)
Q Consensus 48 ~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~ 78 (106)
...+.+-+.+.|.+++.|.++|....++.+.
T Consensus 145 ~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~ 175 (206)
T smart00234 145 AENLPSGLLIEPLGNGPSKVTWVSHADLKGW 175 (206)
T ss_pred EEEeceEEEEEECCCCCeEEEEEEEEecCCC
Confidence 3566778889998888899999999998875
No 50
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=41.02 E-value=35 Score=24.94 Aligned_cols=38 Identities=13% Similarity=0.037 Sum_probs=27.0
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCCCC
Q 034001 68 RWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAHHPPKQA 106 (106)
Q Consensus 68 ~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yl~~~~~ 106 (106)
.+.+.+.+.... .+.+...+.+..+.+.+|+++.++|+
T Consensus 232 ~~~i~i~~~~~~-~~~~~~~~~t~~~~~~lE~~Ir~~P~ 269 (289)
T PRK08706 232 TVTLHFYPAWDS-FPSEDAQADAQRMNRFIEERVREHPE 269 (289)
T ss_pred cEEEEEecCCCC-CCCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 466666644332 23345667899999999999999985
No 51
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=40.30 E-value=80 Score=21.84 Aligned_cols=31 Identities=6% Similarity=-0.016 Sum_probs=25.9
Q ss_pred eeEEEEEEEEEecCCCceEEEEEEEEEeCCC
Q 034001 48 YNSFYVTVQAIPKGEHSCLARWTIKYEKKSE 78 (106)
Q Consensus 48 ~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~ 78 (106)
...+.+-+.++|.++++|.+++.+..++.+.
T Consensus 140 ~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~ 170 (197)
T cd08869 140 AVVLASRYLIEPCGSGKSRVTHICRVDLRGR 170 (197)
T ss_pred EEEEeeeEEEEECCCCCeEEEEEEEECCCCC
Confidence 4556778889998888999999999998764
No 52
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=39.70 E-value=45 Score=24.72 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=27.3
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCCCC
Q 034001 68 RWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAHHPPKQA 106 (106)
Q Consensus 68 ~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yl~~~~~ 106 (106)
.|.+.+++.... ++.++..+.+..+.+.+|+++.++|+
T Consensus 251 ~~~i~~~~~~~~-~~~~d~~~~t~~~n~~lE~~Ir~~Pe 288 (309)
T PRK06860 251 GYELIILPPEDS-PPLDDAEATAAWMNKVVEKCILMAPE 288 (309)
T ss_pred eEEEEEecCCCC-CCCCCHHHHHHHHHHHHHHHHHcCch
Confidence 477777755433 22345567788999999999999985
No 53
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=39.09 E-value=1e+02 Score=20.20 Aligned_cols=27 Identities=7% Similarity=0.054 Sum_probs=22.2
Q ss_pred EEEEEEEecCCCceEEEEEEEEEeCCC
Q 034001 52 YVTVQAIPKGEHSCLARWTIKYEKKSE 78 (106)
Q Consensus 52 ~~t~~v~p~~~g~s~v~W~~~ye~~~~ 78 (106)
.+-+.+.|.++++|.+++.+..++.+.
T Consensus 141 ~~~~~i~~~~~~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 141 LSGWIIEPLDPGKTKVTYVLQVDPKGS 167 (193)
T ss_pred ccEEEEEECCCCCEEEEEEEeeCCCCC
Confidence 455678888778999999999998864
No 54
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=38.37 E-value=62 Score=21.33 Aligned_cols=34 Identities=18% Similarity=0.435 Sum_probs=23.8
Q ss_pred EEEEEEEeCCCCEEEEEEEeCcc---cC--ceeEEEEEE
Q 034001 22 KEIIEEIDDEKNSTTFKVIEGHL---LD--KYNSFYVTV 55 (106)
Q Consensus 22 kErl~~~D~~~~~~~y~iieg~~---~~--~~~~~~~t~ 55 (106)
-++++..+-+++.++|.-.+|+. ++ -|..|....
T Consensus 59 ~~kve~a~ie~~~~q~lY~dg~~~~FMD~etyeq~~v~~ 97 (131)
T COG0231 59 DDKVEVAIVERKTAQYLYIDGDFYVFMDLETYEQYELPK 97 (131)
T ss_pred CCEEEEeEEeeeeEEEEEcCCCeEEEccCCCceEEEecc
Confidence 36778888888888888889985 23 366554444
No 55
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=36.58 E-value=1.3e+02 Score=20.02 Aligned_cols=45 Identities=20% Similarity=0.088 Sum_probs=32.7
Q ss_pred EeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeC
Q 034001 28 IDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKK 76 (106)
Q Consensus 28 ~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~ 76 (106)
.++..++.++++--.+. --+.++++.+.|. +++|.+.++.+....
T Consensus 84 ~~~g~~~g~~~~~~~G~---P~~~~G~~~L~~~-~~gt~~~~~g~v~v~ 128 (159)
T PF10698_consen 84 LDDGRRTGTFTVSIPGA---PVSISGTMRLRPD-GGGTRLTVEGEVKVK 128 (159)
T ss_pred CCCCeEEEEEEEEecCc---eEEEEEEEEEecC-CCCEEEEEEEEEEEE
Confidence 36677777777643322 2478999999994 447999999998865
No 56
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=36.05 E-value=54 Score=24.38 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=27.5
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCCCC
Q 034001 68 RWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAHHPPKQA 106 (106)
Q Consensus 68 ~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yl~~~~~ 106 (106)
.|.+.+++..+. ++..+..+.+..+.+.+|+++.++|+
T Consensus 257 ~~~i~~~~~~~~-~~~~d~~~~t~~~~~~lE~~Ir~~Pe 294 (314)
T PRK08943 257 RLDIEIRPPMDD-LLSADDETIARRMNEEVEQFVGPHPE 294 (314)
T ss_pred eEEEEEecCCCC-CCCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 577777755432 22345567788999999999999985
No 57
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=35.81 E-value=1.4e+02 Score=20.13 Aligned_cols=31 Identities=10% Similarity=0.038 Sum_probs=25.6
Q ss_pred eeEEEEEEEEEecCCCceEEEEEEEEEeCCC
Q 034001 48 YNSFYVTVQAIPKGEHSCLARWTIKYEKKSE 78 (106)
Q Consensus 48 ~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~ 78 (106)
...+.+-+.+.|.+++.|.+.+...-++.+.
T Consensus 145 ~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~ 175 (206)
T PF01852_consen 145 AEILISGWVIRPLGDGRTRVTYVSQVDPKGW 175 (206)
T ss_dssp EEEESEEEEEEEETTCEEEEEEEEEEESSSS
T ss_pred eeeeeEeEEEEEccCCCceEEEEEEECCCCC
Confidence 4467778889999888899999999888763
No 58
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=35.09 E-value=1.4e+02 Score=20.05 Aligned_cols=50 Identities=6% Similarity=0.046 Sum_probs=34.2
Q ss_pred eeEEEEEEEEEecCCCceEEEEEEEEEeCCCCCCChhhHH-----HHHHHHHHHHHhc
Q 034001 48 YNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDVPDPQGIV-----NLAIEMTKGIEAH 100 (106)
Q Consensus 48 ~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~~~~p~~~~-----~~~~~~~k~ie~y 100 (106)
...+.+.+.++|.++++|.+++.+.+++.+. .|..+. ....+++.++.+.
T Consensus 139 ~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~---iP~~lv~~~~~~~~~~~l~~l~~~ 193 (195)
T cd08876 139 IKTVEGQWTFTPLGNGKTRVTYQAYADPGGS---IPGWLANAFAKDAPYNTLENLRKQ 193 (195)
T ss_pred ceeceeeEEEEECCCCeEEEEEEEEeCCCCC---CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667778899999888999999999998753 333332 2344566666544
No 59
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=34.75 E-value=1.2e+02 Score=19.33 Aligned_cols=74 Identities=9% Similarity=-0.063 Sum_probs=41.8
Q ss_pred EEEEEEEeCCCCEEEEEEEeCc-ccCceeEEEEEEEEEecCCCceEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHhc
Q 034001 22 KEIIEEIDDEKNSTTFKVIEGH-LLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAH 100 (106)
Q Consensus 22 kErl~~~D~~~~~~~y~iieg~-~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~y 100 (106)
.=++.++++. ++++|+..-.+ ... .....++.+.+.+ ++|.++++...-+ .. .........-..++..|++|
T Consensus 71 ~g~v~~v~p~-~~i~~~~~~~~~~~~--~~~~v~~~~~~~~-~~T~lt~~~~~~~--~~-~~~~~~~~GW~~~l~~L~~~ 143 (146)
T cd08895 71 GGRFLELVPN-ERIVYTDVFDDPSLS--GEMTMTWTLSPVS-GGTDVTIVQSGIP--DG-IPPEDCELGWQESLANLAAL 143 (146)
T ss_pred EEEEEEEcCC-CEEEEEEEecCCCCC--ceEEEEEEEEecC-CCEEEEEEEeCCC--ch-hhhhHHHHHHHHHHHHHHHH
Confidence 3356667554 46666643121 111 2336788888875 5788888876432 11 12233345566777788887
Q ss_pred CC
Q 034001 101 HP 102 (106)
Q Consensus 101 l~ 102 (106)
|-
T Consensus 144 le 145 (146)
T cd08895 144 VE 145 (146)
T ss_pred hc
Confidence 64
No 60
>PF14275 DUF4362: Domain of unknown function (DUF4362)
Probab=33.95 E-value=1.2e+02 Score=19.05 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=19.5
Q ss_pred CCCCeEEEEEEecCCeeeEEEEEEEEEeCCCCEEEEEE
Q 034001 2 GKPGTVITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKV 39 (106)
Q Consensus 2 g~~Gsvr~~~~~~~g~~~~~kErl~~~D~~~~~~~y~i 39 (106)
|.+++||.+.|...|.|- +..+.-....+.|++
T Consensus 28 ~k~d~IrIv~yT~EGdPI-----~~~L~~~G~~I~y~~ 60 (98)
T PF14275_consen 28 GKPDKIRIVQYTIEGDPI-----FQDLEYDGNQIKYTS 60 (98)
T ss_pred CCCCEEEEEEecCCCCCE-----EEEEEECCCEEEEEE
Confidence 678899999998555322 122334445555554
No 61
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=33.83 E-value=58 Score=24.12 Aligned_cols=38 Identities=8% Similarity=-0.018 Sum_probs=26.0
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCCCC
Q 034001 68 RWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAHHPPKQA 106 (106)
Q Consensus 68 ~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yl~~~~~ 106 (106)
.|.+.+++.-.. ++.+...+.+..+.+.+|+++.++|+
T Consensus 249 ~~~i~~~~~~~~-~~~~~~~~~~~~~~~~lE~~Ir~~P~ 286 (310)
T PRK05646 249 GYRLVIHPPLED-FPGESEEADCLRINQWVERVVRECPE 286 (310)
T ss_pred eEEEEEeCCCcC-CCCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 477777653332 22334455578999999999999985
No 62
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=31.44 E-value=68 Score=23.77 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=26.1
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCCCC
Q 034001 68 RWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAHHPPKQA 106 (106)
Q Consensus 68 ~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yl~~~~~ 106 (106)
.+.+.+++..+.. +.++..+.+..+.+.+|+++..+|+
T Consensus 239 ~y~~~~~~~~~~~-~~~~~~~~~~~~n~~lE~~Ir~~Pe 276 (305)
T PRK08734 239 EFALHVQPADPAV-ADPDPLRAATALNAGIERIARRDPA 276 (305)
T ss_pred cEEEEEecCCCCC-CCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 3566666543322 2345567789999999999999985
No 63
>PRK08905 lipid A biosynthesis lauroyl acyltransferase; Validated
Probab=31.31 E-value=60 Score=23.83 Aligned_cols=37 Identities=14% Similarity=0.035 Sum_probs=26.0
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCCCC
Q 034001 68 RWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAHHPPKQA 106 (106)
Q Consensus 68 ~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yl~~~~~ 106 (106)
.+.+.+++.... .++...+.+..+.+.+|+++.++|+
T Consensus 227 ~y~~~~~~~~~~--~~~~~~~~t~~~~~~lE~~Ir~~Pe 263 (289)
T PRK08905 227 GYRLHLRPVQEP--LPGDKAADAAVINAEIERLIRRFPT 263 (289)
T ss_pred cEEEEEecCCCC--CCCCHHHHHHHHHHHHHHHHHcCcH
Confidence 355666644331 2345567789999999999999985
No 64
>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-te
Probab=30.21 E-value=1.6e+02 Score=19.07 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=27.9
Q ss_pred CEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEe
Q 034001 33 NSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEK 75 (106)
Q Consensus 33 ~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~ 75 (106)
....|.+.-+-.+..+..+...+.+.|.+.+.|++.|..-+.+
T Consensus 80 ~~~~~~~fPn~~~~~~~~~~~~~~~~P~~~~~t~~~~~~~~~~ 122 (188)
T cd00680 80 GYLYLYLFPNLMIGLYPDSLQVQQFVPIGPNKTRLEVRLYRPK 122 (188)
T ss_pred CeEEEEECCcEeeeecCCEEEEEEEEecCCCcEEEEEEEEEec
Confidence 3344444433233345567778899999888899888766554
No 65
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=29.85 E-value=80 Score=22.93 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=27.5
Q ss_pred EEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCCCC
Q 034001 67 ARWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAHHPPKQA 106 (106)
Q Consensus 67 v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yl~~~~~ 106 (106)
..|.+.+++.-...+ .+...+.+..+.+.+|+.+.++|+
T Consensus 246 ~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~lE~~Ir~~P~ 284 (295)
T PF03279_consen 246 SHYRIEIEPPLDFPS-SEDIEELTQRYNDRLEEWIREHPE 284 (295)
T ss_pred CEEEEEEeecccCCc-cchHHHHHHHHHHHHHHHHHcChH
Confidence 467777776433222 224567788999999999999985
No 66
>PF10651 DUF2479: Domain of unknown function (DUF2479); InterPro: IPR018913 This domain is found in phage from a number of different bacteria including (Listeria phage A118 (Bacteriophage A118)). It is thought to be a putative long tail fibre protein.; PDB: 4DIV_L 3UH8_A.
Probab=29.59 E-value=1.8e+02 Score=19.60 Aligned_cols=57 Identities=9% Similarity=0.190 Sum_probs=36.2
Q ss_pred eEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEecCCCceEEEEEEEEEeC
Q 034001 19 EIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPKGEHSCLARWTIKYEKK 76 (106)
Q Consensus 19 ~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~~~g~s~v~W~~~ye~~ 76 (106)
..+.+-++-+|+.+..++|.+-+- .+...-.+.+.+-+.-.+++.+...-.+.|+-.
T Consensus 68 ~~~~~~~~i~d~~~G~i~y~lp~~-~l~~~G~v~a~~~i~~~~~~~~~~t~~F~F~V~ 124 (170)
T PF10651_consen 68 IFIQDDVEIVDPTNGIIQYTLPDE-FLKHVGKVKAQLFIYYNGDGQSISTANFTFEVE 124 (170)
T ss_dssp SSEEEE-SEEETTTTEEEEE--TT-TTHSSEEEEEEEEEEEESSSEEEE---EEEEEE
T ss_pred EEEEecceEEcCcCcEEEEEECHH-HhccCcEEEEEEEEEECCCCCEEEEeeEEEEEe
Confidence 457778899999999999999654 344467777888777655555555555555544
No 67
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=29.13 E-value=2e+02 Score=20.03 Aligned_cols=31 Identities=10% Similarity=0.055 Sum_probs=25.3
Q ss_pred eeEEEEEEEEEecCC--CceEEEEEEEEEeCCC
Q 034001 48 YNSFYVTVQAIPKGE--HSCLARWTIKYEKKSE 78 (106)
Q Consensus 48 ~~~~~~t~~v~p~~~--g~s~v~W~~~ye~~~~ 78 (106)
...+.+-+.+.|.++ +.|.++|.+..++++.
T Consensus 149 ~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~ 181 (209)
T cd08905 149 AENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW 181 (209)
T ss_pred EEeeccEEEEEECCCCCCceEEEEEEeecCCCC
Confidence 456667788899865 6899999999998875
No 68
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=28.72 E-value=65 Score=23.72 Aligned_cols=37 Identities=8% Similarity=0.317 Sum_probs=26.0
Q ss_pred EEEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCCCC
Q 034001 69 WTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAHHPPKQA 106 (106)
Q Consensus 69 W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yl~~~~~ 106 (106)
+.+.+.+.-.. ++.+...+.+..+.+.+|+++.++|+
T Consensus 236 y~v~~~~~~~~-~~~~~~~~~t~~~~~~lE~~Ir~~Pe 272 (298)
T PRK07920 236 WGFRVHPPLDV-PSAEDVAAMTQALADAFAANIAAHPE 272 (298)
T ss_pred EEEEEeCCCCC-CchhHHHHHHHHHHHHHHHHHHhChH
Confidence 66777654321 22345567789999999999999884
No 69
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=28.30 E-value=2.1e+02 Score=19.93 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=23.7
Q ss_pred eEEEEEEEEEecCCCceEEEEEEEEEeCCC
Q 034001 49 NSFYVTVQAIPKGEHSCLARWTIKYEKKSE 78 (106)
Q Consensus 49 ~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~ 78 (106)
..+.+-+.+.|.++++|.+.|.+..++.+.
T Consensus 146 ~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~ 175 (222)
T cd08871 146 ISLLTGYLIRPTGPKGCTLTYVTQNDPKGS 175 (222)
T ss_pred EEEccEEEEEECCCCCEEEEEEEecCCCCC
Confidence 345666788898778899999999888764
No 70
>PF08868 YugN: YugN-like family; InterPro: IPR014967 This entry contains proteins related to Bacillus subtilis YugN, they are functionally uncharacterised. ; PDB: 2R5X_A 2PWW_A.
Probab=27.22 E-value=38 Score=22.61 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=18.3
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHHhcC
Q 034001 74 EKKSEDVPDPQGIVNLAIEMTKGIEAHH 101 (106)
Q Consensus 74 e~~~~~~~~p~~~~~~~~~~~k~ie~yl 101 (106)
+|.+.+..-|..+.+.+.++++.||..|
T Consensus 104 eP~d~D~~~p~~~v~~~~~~l~ele~~L 131 (132)
T PF08868_consen 104 EPVDKDAEFPEKWVDKGEELLKELEDEL 131 (132)
T ss_dssp ----T-B-EEHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCcCCHHHHHHHHHHHHHHHHhh
Confidence 3555555557888999999999999865
No 71
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=27.03 E-value=1.6e+02 Score=23.12 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=34.5
Q ss_pred CeEEEEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCcccCceeEEEEEEEEEec
Q 034001 5 GTVITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLLDKYNSFYVTVQAIPK 60 (106)
Q Consensus 5 Gsvr~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~~~~~~~~~t~~v~p~ 60 (106)
=+|+.++-+.+| ..+.|- .+|++++++.|-=++-.. .|+..+..-++.++
T Consensus 16 lsIKi~nAG~~G--~~VveG--tidE~~K~inFPRld~~T--nFsaL~~EA~LS~G 65 (442)
T PF15416_consen 16 LSIKILNAGADG--NTVVEG--TIDEDNKTINFPRLDVET--NFSALKFEAELSDG 65 (442)
T ss_pred eeEEEeecCCCC--CeeEEE--EEcCcCceeccccccccc--CccceeeEEecCCC
Confidence 378888888777 677777 489999999998766432 35555555555443
No 72
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=26.91 E-value=86 Score=23.20 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=26.4
Q ss_pred EEEEEEEeCCCCCC--C-hhhHHHHHHHHHHHHHhcCCCCCC
Q 034001 68 RWTIKYEKKSEDVP--D-PQGIVNLAIEMTKGIEAHHPPKQA 106 (106)
Q Consensus 68 ~W~~~ye~~~~~~~--~-p~~~~~~~~~~~k~ie~yl~~~~~ 106 (106)
.+.+.+++.-+... + +....+.+..+.+.+|+.+.++|+
T Consensus 257 ~y~i~~~~~~~~~~~~~~~~d~~~~t~~~n~~lE~~Ir~~Pe 298 (308)
T PRK06553 257 RFRLELTERVELPRDADGQIDVQATMQALTDVVEGWVREYPG 298 (308)
T ss_pred eEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHcChH
Confidence 47777765433211 1 234566788999999999999985
No 73
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=26.76 E-value=52 Score=23.69 Aligned_cols=42 Identities=7% Similarity=-0.021 Sum_probs=28.1
Q ss_pred CCCceEEEEEEEEEeCCCCCCCh-h--hHHHHHHHHHHHHHhcCCC
Q 034001 61 GEHSCLARWTIKYEKKSEDVPDP-Q--GIVNLAIEMTKGIEAHHPP 103 (106)
Q Consensus 61 ~~g~s~v~W~~~ye~~~~~~~~p-~--~~~~~~~~~~k~ie~yl~~ 103 (106)
++++|.+.+.+..++.+.- |.. - -.+..+-++++.+.+|++.
T Consensus 182 ~~~~~~ity~~~~dPgG~i-P~wvvn~~~k~~~P~~l~~~~~~~~~ 226 (235)
T cd08872 182 DNILCKITYVANVNPGGWA-PASVLRAVYKREYPKFLKRFTSYVQE 226 (235)
T ss_pred CCCeEEEEEEEEeCCCCCc-cHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 3568999999998887642 221 1 1134456889999988765
No 74
>COG5569 Uncharacterized conserved protein [Function unknown]
Probab=26.72 E-value=67 Score=20.51 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=28.1
Q ss_pred CCeEEEEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCccc
Q 034001 4 PGTVITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLL 45 (106)
Q Consensus 4 ~Gsvr~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~ 45 (106)
+|-||.+-.. .++..-..|-|..++-..|++.|++-+-..+
T Consensus 41 t~~VkkvD~~-akKVTl~He~i~~l~mp~MTM~F~Vkd~a~l 81 (108)
T COG5569 41 TGVVKKVDLE-AKKVTLHHEPIKNLNMPAMTMVFRVKDQAKL 81 (108)
T ss_pred ccceeeeccc-cceEEEeccchhhCCCcceEEEEEeccHHHh
Confidence 3446666665 4555666778888888888888888654443
No 75
>PF07474 G2F: G2F domain; InterPro: IPR006605 Basement membranes are sheet-like extracellular matrices found at the basal surfaces of epithelia and condensed mesenchyma. By preventing cell mixing and providing a cell-adhesive substrate, they play crucial roles in tissue development and function. Basement menbranes are composed of an evolutionarily ancient set of large glycoproteins, which includes members of the laminin family, collagen IV, perlecan and nidogen/entactin. Nidogen/entactin is an important basement membrane component, which promotes cell attachment, neutrophil chemotaxis, trophoblast outgrowth, and angiogenesis. It consists of three globular regions, G1-G3. G1 and G2 are connected by a thread-like structure, whereas that between G2 and G3 is rod-like [, ]. The nidogen G2 region binds to collagen IV and perlecan. The nidogen G2 structure is composed of two domains, an N-terminal EGF-like domain and a much larger beta-barrel domain of ~230 residues. The nidogen G2 beta-barrel consists of an 11-stranded beta-barrel of complex topology, the interior of which is traversed by the hydrophobic, predominantly alpha helical segment connecting strands C and D. The N-terminal half of the barrel comprises two beta-meanders (strands A-C and D-F) linked by the buried alpha-helical segment. The polypeptide chain then crosses the bottom of the barrel and forms a five-stranded Greek key motif in the C- terminal half of the domain. Helix alpha3 caps the top of the barrel and forms the interface to the EGF-like domain. The nidogen G2 beta-barrel domain has unexpected structural similarity to green fluorescent protein, suggesting that they derive from a common ancestor. A large surface patch on the barrel surface is strikingly conserved in all metazoan nidogens. Site-directed mutagenesis demonstrates that the conserved residues in the conserved patch are involved in the binding of perlecan, and possibly also of collagen IV [].; PDB: 1GL4_A 1H4U_A.
Probab=26.63 E-value=2.4e+02 Score=19.98 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=26.5
Q ss_pred EEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCccc
Q 034001 9 TWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLL 45 (106)
Q Consensus 9 ~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~ 45 (106)
.++|. .|....++++..-+|..+...--..|+|.++
T Consensus 93 ~v~F~-tGe~l~itq~~~GlD~~~~L~~d~~i~G~vP 128 (192)
T PF07474_consen 93 EVEFA-TGERLTITQTARGLDSDGYLLLDTVISGQVP 128 (192)
T ss_dssp EEEES-SS--EEEEEEEEEE-TTS-EEEEEEEEEEE-
T ss_pred EEEEe-CCCEEEEEEEecccCCCCcEEEEEEEeccCC
Confidence 57786 5566889999999999999888889998764
No 76
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=25.70 E-value=94 Score=20.65 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=25.2
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCCCC
Q 034001 68 RWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAHHPPKQA 106 (106)
Q Consensus 68 ~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yl~~~~~ 106 (106)
++++.|.+.-.. ++.....+.+..+.+.+|+.+.++|+
T Consensus 145 ~~~i~~~~~i~~-~~~~~~~~~~~~~~~~lE~~i~~~P~ 182 (192)
T cd07984 145 GYRIEFEPPLEN-PPSEDVEEDTQRLNDALEAAIREHPE 182 (192)
T ss_pred CEEEEEeCCCCC-CCCCCHHHHHHHHHHHHHHHHHhCch
Confidence 466666643221 11234567788999999999999884
No 77
>cd00255 nidG2 Nidogen, G2 domain; Nidogen is an important component of the basement membrane, an extracellular sheet-like matrix. Nidogen is a multifunctional protein that interacts with many other basement membrane proteins, like collagen, perlecan, lamin, and has a potential role in the assembly and connection of networks. Nidogen consists of 3 globular domains (G1-G3), G3 is the lamin-binding domain, while G2 binds collagen IV and perlecan. Also found in hemicentin, a protein which functions at various cell-cell and cell-matrix junctions and might assist in refining broad regions of cell contact into oriented, line-shaped junctions. Nidogen G2 consists of an N-terminal EGF-like domain (excluded from this alignment model) and an 11-stranded beta-barrel with a central helix, a topology that exhibits high structural similarity to the green flourescent proteins of Cnidaria.
Probab=25.32 E-value=2.2e+02 Score=20.68 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=30.3
Q ss_pred EEEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCccc
Q 034001 8 ITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLL 45 (106)
Q Consensus 8 r~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~ 45 (106)
-.++|.++|....+++...-+|..++..--..++|.++
T Consensus 90 ~~v~F~~~ge~l~I~Q~~~GlD~~~~L~~~~~i~G~vP 127 (224)
T cd00255 90 AEVTFYTGGEKLRITQVARGLDSHGHLLLDTVISGRVP 127 (224)
T ss_pred EEEEEcCCCEEEEEEEEEeccCccCeEEEEEEEEeecC
Confidence 35677755766789999999999999888888888753
No 78
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=24.52 E-value=1.1e+02 Score=22.48 Aligned_cols=23 Identities=13% Similarity=-0.205 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCC
Q 034001 84 QGIVNLAIEMTKGIEAHHPPKQA 106 (106)
Q Consensus 84 ~~~~~~~~~~~k~ie~yl~~~~~ 106 (106)
+...+.+..+.+.+|+++.++|+
T Consensus 251 ~~~~~~t~~~n~~lE~~Ir~~Pe 273 (293)
T PRK06946 251 GDDDLDARRMNAFLEEQIRLMPE 273 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcH
Confidence 34456789999999999999985
No 79
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=24.45 E-value=1.6e+02 Score=17.13 Aligned_cols=25 Identities=12% Similarity=0.339 Sum_probs=19.5
Q ss_pred eEEEEEEEEEeCC---CCEEEEEEEeCc
Q 034001 19 EIAKEIIEEIDDE---KNSTTFKVIEGH 43 (106)
Q Consensus 19 ~~~kErl~~~D~~---~~~~~y~iieg~ 43 (106)
+..--++.+.|.. +..+.|++++|+
T Consensus 12 g~~v~~v~a~D~D~~~n~~i~y~i~~~~ 39 (93)
T PF00028_consen 12 GTVVGQVTATDPDSGPNSQITYSILGGN 39 (93)
T ss_dssp SSEEEEEEEEESSTSTTSSEEEEEEETT
T ss_pred CCEEEEEEEEeCCCCCCceEEEEEecCc
Confidence 3455577888875 889999999987
No 80
>PF08473 VGCC_alpha2: Neuronal voltage-dependent calcium channel alpha 2acd; InterPro: IPR013680 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. This eukaryotic domain has been found in the neuronal voltage-dependent calcium channel (VGCC) alpha 2a, 2c, and 2d subunits. It is also found in other calcium channel alpha-2/delta subunits to the N terminus of a Cache domain (IPR004010 from INTERPRO).
Probab=23.97 E-value=1.8e+02 Score=18.28 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=14.9
Q ss_pred EEeCCCCEEEEEEEeCc
Q 034001 27 EIDDEKNSTTFKVIEGH 43 (106)
Q Consensus 27 ~~D~~~~~~~y~iieg~ 43 (106)
-+|..+|+++|.=++|.
T Consensus 38 YId~~~RtYtw~PI~gT 54 (94)
T PF08473_consen 38 YIDEVNRTYTWTPINGT 54 (94)
T ss_pred eeeeeceeEEEeccCCC
Confidence 47899999999999885
No 81
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=23.34 E-value=68 Score=19.95 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=16.1
Q ss_pred CeEEEEEEecCCeeeEEEEEEEEEeCCCCEEEEEE
Q 034001 5 GTVITWTYKHDGVTEIAKEIIEEIDDEKNSTTFKV 39 (106)
Q Consensus 5 Gsvr~~~~~~~g~~~~~kErl~~~D~~~~~~~y~i 39 (106)
|-.+.+++. .|. |+|.+|.++++ -|.+
T Consensus 26 g~~kEf~lp-sGk------R~D~id~~~k~-IyEL 52 (89)
T PF15650_consen 26 GREKEFRLP-SGK------RPDFIDFETKI-IYEL 52 (89)
T ss_pred cceeeeecC-CCC------cCccccCCcce-EEEe
Confidence 555555554 442 78888888843 3444
No 82
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=23.14 E-value=2.7e+02 Score=19.49 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=22.1
Q ss_pred eEEEEEEEEEeCCCCEEEEEEEeCcc
Q 034001 19 EIAKEIIEEIDDEKNSTTFKVIEGHL 44 (106)
Q Consensus 19 ~~~kErl~~~D~~~~~~~y~iieg~~ 44 (106)
+.+||-+..+++.+....|.+-++.+
T Consensus 48 GkvKE~~~~ynp~~~~~~Y~is~~~l 73 (178)
T PF02087_consen 48 GKVKEALYHYNPKNKTYFYDISESKL 73 (178)
T ss_dssp TEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred CceEEEEEEecCCCceEEEEeeeeec
Confidence 47999999999999999999877554
No 83
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=22.29 E-value=1.2e+02 Score=22.14 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCC
Q 034001 84 QGIVNLAIEMTKGIEAHHPPKQA 106 (106)
Q Consensus 84 ~~~~~~~~~~~k~ie~yl~~~~~ 106 (106)
+...+.+..+.+.+|+++.++|+
T Consensus 257 ~~~~~~~~~~~~~lE~~Ir~~P~ 279 (298)
T PRK08419 257 ADILEATQAQASACEEMIRKKPD 279 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHhCch
Confidence 44566788999999999999985
No 84
>PF11192 DUF2977: Protein of unknown function (DUF2977); InterPro: IPR021358 This entry is represented by Bacteriophage 96, Orf38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.04 E-value=1.1e+02 Score=17.70 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=13.7
Q ss_pred EEeCCCCEEEEEEEeC
Q 034001 27 EIDDEKNSTTFKVIEG 42 (106)
Q Consensus 27 ~~D~~~~~~~y~iieg 42 (106)
.+|+.|..++|.+++|
T Consensus 4 ~ine~n~I~gya~iG~ 19 (62)
T PF11192_consen 4 KINEKNEIIGYATIGG 19 (62)
T ss_pred EecCCCeEEEEEEEcC
Confidence 4789999999999865
No 85
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=21.98 E-value=2.8e+02 Score=19.27 Aligned_cols=30 Identities=3% Similarity=-0.047 Sum_probs=25.0
Q ss_pred eeEEEEEEEEEecCCCceEEEEEEEEEeCC
Q 034001 48 YNSFYVTVQAIPKGEHSCLARWTIKYEKKS 77 (106)
Q Consensus 48 ~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~ 77 (106)
...|.+.+.++|.++++|.+.+....++.+
T Consensus 149 v~~~~~~~~i~p~~~~~t~i~~~~~~DPgG 178 (207)
T cd08910 149 VKQYKQSLAIESDGKKGSKVFMYYFDNPGG 178 (207)
T ss_pred EEEEEEEEEEEeCCCCceEEEEEEEeCCCC
Confidence 678889999999877789999888887754
No 86
>COG2123 RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis]
Probab=21.86 E-value=1.1e+02 Score=22.97 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=11.6
Q ss_pred ceeEEEEEEEEEecCCCceEEEE
Q 034001 47 KYNSFYVTVQAIPKGEHSCLARW 69 (106)
Q Consensus 47 ~~~~~~~t~~v~p~~~g~s~v~W 69 (106)
.|.....+.-+.|+.+|.+.|+|
T Consensus 32 efR~ieI~~~vi~ka~GSa~Vkl 54 (272)
T COG2123 32 EFRPLEIETGVIPKANGSALVKL 54 (272)
T ss_pred cccceEEEeCceecCCCcEEEEe
Confidence 34444445555555555555554
No 87
>PRK08025 lipid A biosynthesis palmitoleoyl acyltransferase; Reviewed
Probab=21.80 E-value=1.3e+02 Score=22.16 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=24.1
Q ss_pred EEEEEEeCCCCCCChhhHHHHHHHHHHHHHhcCCCCCC
Q 034001 69 WTIKYEKKSEDVPDPQGIVNLAIEMTKGIEAHHPPKQA 106 (106)
Q Consensus 69 W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yl~~~~~ 106 (106)
+.+.+.+..... ++...+.+..+.+.+|+.+.++|+
T Consensus 250 ~~i~~~~~~~~~--~~~~~~~~~~~n~~lE~~Ir~~Pe 285 (305)
T PRK08025 250 YRLFITPEMEGY--PTDENQAAAYMNKIIEKEIMRAPE 285 (305)
T ss_pred EEEEEeCCccCC--CCCHHHHHHHHHHHHHHHHHcCcH
Confidence 566666543321 244455577778999999999985
No 88
>TIGR02777 LigD_PE_dom DNA ligase D, 3'-phosphoesterase domain. Most sequences in this family are the 3'-phosphoesterase domain of a multidomain, multifunctional DNA ligase, LigD, involved, along with bacterial Ku protein, in non-homologous end joining, the less common of two general mechanisms of repairing double-stranded breaks in DNA sequences. LigD is variable in architecture, as it lacks this domain in Bacillus subtilis, is permuted in Mycobacterium tuberculosis, and occasionally is encoded by tandem ORFs rather than as a multifuntional protein. In a few species (Dehalococcoides ethenogenes and the archaeal genus Methanosarcina), sequences corresponding to the ligase and polymerase domains of LigD are not found, and the role of this protein is unclear.
Probab=21.19 E-value=1.5e+02 Score=20.31 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=9.9
Q ss_pred CceEEEEE-EEEEeCC
Q 034001 63 HSCLARWT-IKYEKKS 77 (106)
Q Consensus 63 g~s~v~W~-~~ye~~~ 77 (106)
+|+++.|- ..|++..
T Consensus 95 aG~V~iWD~Gty~~~~ 110 (156)
T TIGR02777 95 AGTVIVWDRGTWEPEG 110 (156)
T ss_pred CccEEEEeCceEEeCC
Confidence 37888885 4566653
No 89
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=20.86 E-value=3.1e+02 Score=19.35 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=25.5
Q ss_pred eeEEEEEEEEEecCCCceEEEEEEEEEeCCC
Q 034001 48 YNSFYVTVQAIPKGEHSCLARWTIKYEKKSE 78 (106)
Q Consensus 48 ~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~ 78 (106)
...+.+.+.++|.++|+|.++..+..++.+.
T Consensus 147 ~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~ 177 (204)
T cd08908 147 VNVLLSRYLIEPCGSGKSKLTYMCRIDLRGH 177 (204)
T ss_pred EEEEeeEEEEEECCCCcEEEEEEEEeCCCCC
Confidence 4556777889999888999999999998764
No 90
>smart00682 G2F G2 nidogen domain and fibulin.
Probab=20.69 E-value=2.7e+02 Score=20.26 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=29.3
Q ss_pred EEEEecCCeeeEEEEEEEEEeCCCCEEEEEEEeCccc
Q 034001 9 TWTYKHDGVTEIAKEIIEEIDDEKNSTTFKVIEGHLL 45 (106)
Q Consensus 9 ~~~~~~~g~~~~~kErl~~~D~~~~~~~y~iieg~~~ 45 (106)
.++| +.|....+++...-+|.......-..|.|.++
T Consensus 93 ~v~F-~~ge~l~i~Q~~~GlD~~~~L~v~~~i~G~vP 128 (227)
T smart00682 93 EVTF-AGGEILRIKQTFSGLDEHGYLKVKIEVSGRVP 128 (227)
T ss_pred EEEE-CCCCEEEEEEEEeccCccccEEEEEEEEeecC
Confidence 5677 46766789999999999999888888888763
No 91
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=20.67 E-value=3e+02 Score=19.03 Aligned_cols=31 Identities=3% Similarity=-0.014 Sum_probs=23.8
Q ss_pred ceeEEEEEEEEEec--CCCceEEEEEEEEEeCC
Q 034001 47 KYNSFYVTVQAIPK--GEHSCLARWTIKYEKKS 77 (106)
Q Consensus 47 ~~~~~~~t~~v~p~--~~g~s~v~W~~~ye~~~ 77 (106)
.+..|.+.+.+.|. ++++|.+.++..-++.+
T Consensus 148 Rv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G 180 (209)
T cd08870 148 RVDDYESSLVIRAVKGDGQGSACEVTYFHNPDG 180 (209)
T ss_pred EEEEEEeEEEEEEecCCCCceEEEEEEEECCCC
Confidence 37888899999998 66678888877776643
No 92
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=20.65 E-value=2.9e+02 Score=20.53 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=27.8
Q ss_pred eeEEEEEEEEEecCCCceEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHh
Q 034001 48 YNSFYVTVQAIPKGEHSCLARWTIKYEKKSEDVPDPQGIVNLAIEMTKGIEA 99 (106)
Q Consensus 48 ~~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~~~~~p~~~~~~~~~~~k~ie~ 99 (106)
-..+++|++=.+.++=-|.++|++.|...+ ..++...|+++++.
T Consensus 91 aNyikGtV~pvpgGg~~g~as~Kl~F~~GG--------~ieFgq~~l~~~s~ 134 (261)
T KOG3294|consen 91 ANYIKGTVQPVPGGGWEGEASFKLTFNEGG--------CIEFGQLLLQAASR 134 (261)
T ss_pred cceeeeeEeecCCCCccceeEEEEEecCCC--------chhHHHHHHHHHHH
Confidence 356677877666544368899999998553 23444455555544
No 93
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=20.37 E-value=2e+02 Score=20.39 Aligned_cols=30 Identities=10% Similarity=-0.005 Sum_probs=23.8
Q ss_pred eEEEEEEEEEecCCCceEEEEEEEEEeCCC
Q 034001 49 NSFYVTVQAIPKGEHSCLARWTIKYEKKSE 78 (106)
Q Consensus 49 ~~~~~t~~v~p~~~g~s~v~W~~~ye~~~~ 78 (106)
..+.+-+-++|.++|+|++++.+..++.+.
T Consensus 149 ~~~~~gylI~P~~~g~trvt~i~~vDpkG~ 178 (205)
T cd08909 149 VVLDSQYLIEPCGSGKSRLTHICRVDLKGH 178 (205)
T ss_pred EEEcCcEEEEECCCCCEEEEEEEEecCCCC
Confidence 344556678899888999999999998764
Done!