Query 034004
Match_columns 106
No_of_seqs 102 out of 1574
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 14:39:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 3.1E-25 1.1E-29 122.4 11.2 80 26-105 19-98 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 1.2E-23 4.1E-28 118.0 12.2 83 23-105 3-85 (110)
3 3mdf_A Peptidyl-prolyl CIS-tra 99.9 4.3E-23 1.5E-27 110.6 10.7 82 23-104 4-85 (85)
4 3bs9_A Nucleolysin TIA-1 isofo 99.9 6.2E-23 2.1E-27 110.4 11.3 82 24-105 4-85 (87)
5 3md1_A Nuclear and cytoplasmic 99.9 1.1E-22 3.7E-27 108.6 11.5 79 27-105 2-80 (83)
6 2e5h_A Zinc finger CCHC-type a 99.9 1.3E-22 4.6E-27 110.6 12.1 84 21-104 11-94 (94)
7 2cqc_A Arginine/serine-rich sp 99.9 1.1E-22 3.7E-27 111.1 11.7 86 20-105 9-94 (95)
8 2kxn_B Transformer-2 protein h 99.9 1.8E-23 6.3E-28 120.2 8.9 87 19-105 39-125 (129)
9 2lkz_A RNA-binding protein 5; 99.9 2.6E-23 8.9E-28 113.9 8.6 83 23-105 6-94 (95)
10 2cq0_A Eukaryotic translation 99.9 1.7E-22 5.7E-27 112.0 11.6 84 22-105 11-94 (103)
11 2la6_A RNA-binding protein FUS 99.9 1.2E-22 4.2E-27 111.8 10.9 85 20-104 7-99 (99)
12 1x5u_A Splicing factor 3B subu 99.9 1.1E-22 3.6E-27 113.1 10.7 86 20-105 9-94 (105)
13 2cpz_A CUG triplet repeat RNA- 99.9 1.9E-22 6.4E-27 113.8 11.6 86 20-105 19-104 (115)
14 2dnm_A SRP46 splicing factor; 99.9 5.5E-23 1.9E-27 113.9 9.3 86 20-105 7-92 (103)
15 2lxi_A RNA-binding protein 10; 99.9 1.5E-23 5.1E-28 114.0 6.8 79 27-105 2-82 (91)
16 1p27_B RNA-binding protein 8A; 99.9 1.2E-22 4.1E-27 113.0 10.6 84 22-105 19-102 (106)
17 1whw_A Hypothetical protein ri 99.9 2E-22 7E-27 110.8 11.3 83 23-105 5-87 (99)
18 2dgo_A Cytotoxic granule-assoc 99.9 3.5E-22 1.2E-26 112.6 12.3 86 20-105 9-94 (115)
19 2do4_A Squamous cell carcinoma 99.9 3.6E-22 1.2E-26 110.0 12.1 84 21-105 12-95 (100)
20 3ulh_A THO complex subunit 4; 99.9 2.7E-22 9.3E-27 111.7 11.7 84 20-104 23-106 (107)
21 2x1f_A MRNA 3'-END-processing 99.9 2.1E-22 7E-27 110.3 11.0 80 26-105 2-81 (96)
22 2dnz_A Probable RNA-binding pr 99.9 2E-22 6.8E-27 110.1 10.9 82 24-105 3-84 (95)
23 2jrs_A RNA-binding protein 39; 99.9 1.4E-22 4.9E-27 113.3 10.4 86 20-105 20-105 (108)
24 2dgs_A DAZ-associated protein 99.9 3.2E-22 1.1E-26 110.1 11.1 84 21-105 5-88 (99)
25 2khc_A Testis-specific RNP-typ 99.9 2.4E-22 8.3E-27 113.7 10.4 83 22-104 36-118 (118)
26 2ywk_A Putative RNA-binding pr 99.9 3.8E-22 1.3E-26 109.0 10.7 85 20-105 10-94 (95)
27 2cqb_A Peptidyl-prolyl CIS-tra 99.9 2.6E-22 8.9E-27 110.9 10.1 84 22-105 8-91 (102)
28 1oo0_B CG8781-PA, drosophila Y 99.9 3.6E-22 1.2E-26 111.8 10.8 85 21-105 21-105 (110)
29 1x4h_A RNA-binding protein 28; 99.9 5.8E-22 2E-26 111.0 11.5 86 20-105 9-100 (111)
30 4f25_A Polyadenylate-binding p 99.9 4.1E-22 1.4E-26 112.5 10.9 80 24-105 3-82 (115)
31 2cph_A RNA binding motif prote 99.9 3.6E-22 1.2E-26 111.2 10.5 87 20-106 9-97 (107)
32 1x5t_A Splicing factor 3B subu 99.9 2.7E-22 9.4E-27 109.7 9.6 82 24-105 3-85 (96)
33 2div_A TRNA selenocysteine ass 99.9 3.3E-22 1.1E-26 110.0 9.8 83 23-105 6-93 (99)
34 1x5s_A Cold-inducible RNA-bind 99.9 2.8E-22 9.6E-27 110.8 9.3 84 22-105 8-91 (102)
35 2lea_A Serine/arginine-rich sp 99.9 4.9E-23 1.7E-27 119.3 6.5 89 17-105 38-126 (135)
36 3ns6_A Eukaryotic translation 99.9 5.7E-23 2E-27 113.4 6.4 82 24-105 4-92 (100)
37 3p5t_L Cleavage and polyadenyl 99.9 5.1E-23 1.8E-27 111.6 6.0 79 27-105 2-82 (90)
38 3s7r_A Heterogeneous nuclear r 99.9 1.4E-21 4.8E-26 105.2 11.5 82 21-103 6-87 (87)
39 2dnh_A Bruno-like 5, RNA bindi 99.9 1.3E-21 4.4E-26 108.6 11.5 83 22-105 11-96 (105)
40 3ucg_A Polyadenylate-binding p 99.9 9.2E-22 3.1E-26 106.2 10.6 79 26-105 6-84 (89)
41 2fy1_A RNA-binding motif prote 99.9 5.7E-22 1.9E-26 112.1 10.1 83 22-105 3-85 (116)
42 2kt5_A RNA and export factor-b 99.9 1.7E-21 5.9E-26 111.1 12.2 83 22-105 31-113 (124)
43 2cqd_A RNA-binding region cont 99.9 1.3E-21 4.3E-26 110.5 11.4 85 20-105 11-95 (116)
44 2dng_A Eukaryotic translation 99.9 1.6E-21 5.5E-26 108.0 11.5 83 21-105 10-92 (103)
45 1u6f_A Tcubp1, RNA-binding pro 99.9 1.1E-21 3.9E-26 113.8 11.4 84 22-105 38-121 (139)
46 2dgp_A Bruno-like 4, RNA bindi 99.9 3.8E-22 1.3E-26 111.0 9.0 85 21-105 8-95 (106)
47 2cpf_A RNA binding motif prote 99.9 6E-22 2.1E-26 108.8 9.6 82 24-105 3-87 (98)
48 2d9p_A Polyadenylate-binding p 99.9 1.4E-21 4.9E-26 108.2 11.1 83 21-105 10-92 (103)
49 2cpe_A RNA-binding protein EWS 99.9 1E-21 3.6E-26 110.4 10.4 84 22-105 11-102 (113)
50 1wi8_A EIF-4B, eukaryotic tran 99.9 1.4E-21 4.7E-26 108.4 10.8 82 22-105 11-93 (104)
51 3n9u_C Cleavage and polyadenyl 99.9 8.6E-22 2.9E-26 116.5 10.5 81 25-105 54-136 (156)
52 4a8x_A RNA-binding protein wit 99.9 8.9E-22 3.1E-26 106.0 9.6 81 25-105 3-84 (88)
53 2cqi_A Nucleolysin TIAR; RNA r 99.9 3.7E-21 1.2E-25 106.5 12.3 84 20-105 9-92 (103)
54 2cq4_A RNA binding motif prote 99.9 3.6E-22 1.2E-26 112.5 8.2 80 25-105 24-103 (114)
55 1p1t_A Cleavage stimulation fa 99.9 1.9E-22 6.4E-27 111.8 6.8 82 24-105 6-87 (104)
56 2cq3_A RNA-binding protein 9; 99.9 5.5E-21 1.9E-25 105.8 12.6 84 20-105 9-92 (103)
57 2do0_A HnRNP M, heterogeneous 99.9 3.7E-21 1.3E-25 108.2 12.0 84 21-105 10-93 (114)
58 2ek1_A RNA-binding protein 12; 99.9 5.7E-22 2E-26 108.2 8.4 83 23-105 12-94 (95)
59 3ex7_B RNA-binding protein 8A; 99.9 9.2E-22 3.1E-26 112.5 9.5 85 21-105 17-101 (126)
60 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.9 2.8E-21 9.6E-26 112.1 11.7 83 21-103 58-140 (140)
61 2cqp_A RNA-binding protein 12; 99.9 1E-21 3.4E-26 107.8 9.1 84 22-105 11-94 (98)
62 2dgv_A HnRNP M, heterogeneous 99.9 1.9E-21 6.5E-26 105.6 10.0 82 22-105 4-85 (92)
63 2dgw_A Probable RNA-binding pr 99.9 5.9E-21 2E-25 103.5 11.8 82 21-105 5-86 (91)
64 1x4e_A RNA binding motif, sing 99.9 2E-22 6.9E-27 108.0 5.8 81 24-104 3-83 (85)
65 2dgx_A KIAA0430 protein; RRM d 99.9 3.7E-21 1.3E-25 105.4 10.8 79 24-105 7-89 (96)
66 1h2v_Z 20 kDa nuclear CAP bind 99.9 5.1E-21 1.8E-25 113.0 12.2 82 24-105 37-118 (156)
67 2dh8_A DAZ-associated protein 99.9 1.3E-21 4.4E-26 108.7 9.0 85 20-105 10-94 (105)
68 2dhg_A TRNA selenocysteine ass 99.9 1.1E-21 3.7E-26 108.8 8.6 83 22-105 5-89 (104)
69 1x4a_A Splicing factor, argini 99.9 8.4E-21 2.9E-25 106.0 12.3 83 20-105 16-98 (109)
70 1s79_A Lupus LA protein; RRM, 99.9 1.3E-21 4.6E-26 108.5 8.7 81 22-104 7-87 (103)
71 2err_A Ataxin-2-binding protei 99.9 2.8E-21 9.6E-26 108.1 10.0 84 20-105 23-106 (109)
72 2m2b_A RNA-binding protein 10; 99.9 3E-22 1E-26 115.4 6.0 86 19-105 16-107 (131)
73 2j76_E EIF-4B, EIF4B, eukaryot 99.9 6.4E-22 2.2E-26 109.2 7.1 84 20-105 13-97 (100)
74 1rk8_A CG8781-PA, CG8781-PA pr 99.9 5.9E-21 2E-25 113.7 11.6 83 23-105 69-151 (165)
75 2rs2_A Musashi-1, RNA-binding 99.9 4.9E-21 1.7E-25 107.2 10.5 85 20-105 19-103 (109)
76 2cqg_A TDP-43, TAR DNA-binding 99.9 1.8E-20 6.2E-25 103.7 12.5 84 20-105 9-92 (103)
77 2kn4_A Immunoglobulin G-bindin 99.9 6.3E-21 2.1E-25 112.7 11.0 83 23-105 67-149 (158)
78 2jwn_A Embryonic polyadenylate 99.9 1.1E-21 3.8E-26 111.9 7.4 80 25-105 35-114 (124)
79 1sjq_A Polypyrimidine tract-bi 99.9 3.2E-21 1.1E-25 106.9 8.8 79 21-105 11-91 (105)
80 2dis_A Unnamed protein product 99.9 4.1E-21 1.4E-25 107.2 9.2 83 23-105 5-91 (109)
81 1x5o_A RNA binding motif, sing 99.9 1.3E-20 4.4E-25 106.0 11.1 84 21-105 20-111 (114)
82 2mss_A Protein (musashi1); RNA 99.9 1.4E-21 4.9E-26 102.4 6.6 75 28-103 1-75 (75)
83 2db1_A Heterogeneous nuclear r 99.9 1.3E-20 4.3E-25 106.8 10.1 82 22-105 13-97 (118)
84 2cpi_A CCR4-NOT transcription 99.9 1.1E-20 3.7E-25 106.0 9.8 82 24-105 13-100 (111)
85 2nlw_A Eukaryotic translation 99.9 5.9E-21 2E-25 106.2 8.6 82 22-105 11-99 (105)
86 2a3j_A U1 small nuclear ribonu 99.8 9.5E-21 3.2E-25 108.6 9.6 82 21-105 24-109 (127)
87 1x4b_A Heterogeneous nuclear r 99.8 1.4E-20 4.9E-25 106.2 10.2 80 25-105 26-105 (116)
88 3r27_A HnRNP L, heterogeneous 99.8 1.8E-20 6E-25 103.1 10.2 79 21-105 16-96 (100)
89 2cpy_A RNA-binding protein 12; 99.8 9.7E-21 3.3E-25 106.7 9.3 82 22-105 11-93 (114)
90 2ki2_A SS-DNA binding protein 99.8 6.4E-22 2.2E-26 107.1 4.3 78 27-105 2-79 (90)
91 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2E-21 6.9E-26 102.2 6.0 76 27-103 1-76 (77)
92 1nu4_A U1A RNA binding domain; 99.8 4.6E-21 1.6E-25 105.0 7.6 83 21-106 3-89 (97)
93 1wel_A RNA-binding protein 12; 99.8 2.7E-21 9.3E-26 110.4 6.8 84 21-105 20-103 (124)
94 2fc9_A NCL protein; structure 99.8 2.9E-20 1E-24 102.5 10.7 80 22-105 11-90 (101)
95 2hgl_A HNRPF protein, heteroge 99.8 7.7E-21 2.6E-25 110.1 8.7 83 21-105 39-124 (136)
96 2ytc_A PRE-mRNA-splicing facto 99.8 2.1E-20 7.3E-25 100.0 9.8 79 20-104 6-85 (85)
97 4f02_A Polyadenylate-binding p 99.8 3.1E-20 1.1E-24 114.5 11.8 83 23-105 12-94 (213)
98 1x4c_A Splicing factor, argini 99.8 4.5E-20 1.5E-24 103.0 11.3 78 21-105 10-92 (108)
99 2xnq_A Nuclear polyadenylated 99.8 5E-20 1.7E-24 101.1 11.2 78 20-105 16-94 (97)
100 2jvo_A Nucleolar protein 3; nu 99.8 3.2E-20 1.1E-24 103.7 10.3 78 20-105 25-102 (108)
101 1wg5_A Heterogeneous nuclear r 99.8 2.1E-20 7.2E-25 103.7 9.5 83 21-105 10-93 (104)
102 2cq1_A PTB-like protein L; RRM 99.8 6.1E-20 2.1E-24 101.4 11.2 78 22-105 11-90 (101)
103 2dnq_A RNA-binding protein 4B; 99.8 3.7E-20 1.3E-24 100.2 10.1 76 22-105 4-79 (90)
104 2fc8_A NCL protein; structure 99.8 4.9E-20 1.7E-24 101.7 10.8 82 21-105 10-91 (102)
105 2jvr_A Nucleolar protein 3; RN 99.8 2.1E-20 7.1E-25 104.9 9.3 80 22-105 24-104 (111)
106 3md3_A Nuclear and cytoplasmic 99.8 7.8E-20 2.7E-24 108.0 12.3 84 22-105 83-166 (166)
107 3lqv_A PRE-mRNA branch site pr 99.8 2.9E-20 1E-24 104.7 9.9 81 22-105 4-84 (115)
108 1x4g_A Nucleolysin TIAR; struc 99.8 4.5E-20 1.5E-24 103.1 10.3 78 22-105 21-98 (109)
109 3q2s_C Cleavage and polyadenyl 99.8 1E-20 3.4E-25 118.0 8.2 80 25-104 67-148 (229)
110 1x4d_A Matrin 3; structural ge 99.8 1.7E-20 6E-25 103.7 8.2 77 23-105 12-91 (102)
111 1why_A Hypothetical protein ri 99.8 4.2E-20 1.4E-24 101.2 9.7 78 22-105 13-92 (97)
112 1fxl_A Paraneoplastic encephal 99.8 9E-20 3.1E-24 107.8 11.7 81 25-105 1-81 (167)
113 2ad9_A Polypyrimidine tract-bi 99.8 3.7E-20 1.3E-24 104.8 9.4 78 22-105 27-106 (119)
114 2dgt_A RNA-binding protein 30; 99.8 1.2E-19 4E-24 98.6 11.1 77 21-105 5-81 (92)
115 2dnn_A RNA-binding protein 12; 99.8 3.5E-20 1.2E-24 103.7 9.1 78 24-104 14-91 (109)
116 2la4_A Nuclear and cytoplasmic 99.8 3.1E-20 1.1E-24 102.4 8.7 78 22-105 23-100 (101)
117 2e5j_A Methenyltetrahydrofolat 99.8 4.3E-20 1.5E-24 101.2 9.2 79 22-105 15-93 (97)
118 1wez_A HnRNP H', FTP-3, hetero 99.8 3.2E-20 1.1E-24 102.8 8.6 81 22-105 11-91 (102)
119 1fj7_A Nucleolin RBD1, protein 99.8 2.3E-21 7.8E-26 107.0 3.5 81 23-105 14-94 (101)
120 2cpx_A Hypothetical protein FL 99.8 7.5E-21 2.6E-25 107.1 5.7 84 22-105 21-104 (115)
121 2wbr_A GW182, gawky, LD47780P; 99.8 1.2E-19 4.1E-24 97.0 9.9 74 25-104 6-79 (89)
122 2krb_A Eukaryotic translation 99.8 9.3E-21 3.2E-25 100.8 5.6 72 27-100 2-80 (81)
123 2cpj_A Non-POU domain-containi 99.8 8.9E-20 3E-24 100.3 9.7 78 22-105 11-88 (99)
124 1b7f_A Protein (SXL-lethal pro 99.8 9.4E-20 3.2E-24 108.0 10.3 81 25-105 2-82 (168)
125 2f3j_A RNA and export factor b 99.8 6.3E-20 2.1E-24 110.5 9.4 81 24-105 86-166 (177)
126 2dnp_A RNA-binding protein 14; 99.8 1.5E-19 5.2E-24 97.7 10.1 76 22-105 5-80 (90)
127 1fjc_A Nucleolin RBD2, protein 99.8 5.3E-20 1.8E-24 100.6 8.2 80 21-105 11-90 (96)
128 2cpd_A Apobec-1 stimulating pr 99.8 4.5E-19 1.5E-23 97.4 11.9 75 23-105 12-88 (99)
129 1wex_A Hypothetical protein (r 99.8 9E-20 3.1E-24 101.2 9.1 78 22-105 11-90 (104)
130 1iqt_A AUF1, heterogeneous nuc 99.8 1E-20 3.5E-25 99.1 5.0 75 28-103 1-75 (75)
131 2dgu_A Heterogeneous nuclear r 99.8 2.3E-19 7.9E-24 99.3 10.8 75 23-105 8-82 (103)
132 1whx_A Hypothetical protein ri 99.8 4.6E-20 1.6E-24 103.5 7.9 75 25-105 9-83 (111)
133 2lmi_A GRSF-1, G-rich sequence 99.8 1.1E-20 3.9E-25 105.3 5.4 83 21-105 6-91 (107)
134 2g4b_A Splicing factor U2AF 65 99.8 2.6E-19 8.8E-24 106.5 11.2 81 24-104 92-172 (172)
135 1wf1_A RNA-binding protein RAL 99.8 2.3E-19 7.9E-24 100.3 10.2 74 24-105 25-99 (110)
136 1wg1_A KIAA1579 protein, homol 99.8 2.4E-19 8.3E-24 96.6 9.8 75 25-106 4-78 (88)
137 2kvi_A Nuclear polyadenylated 99.8 9.9E-20 3.4E-24 99.6 8.3 77 21-105 5-82 (96)
138 2hvz_A Splicing factor, argini 99.8 4.9E-20 1.7E-24 101.6 7.0 74 27-105 1-74 (101)
139 2xs2_A Deleted in azoospermia- 99.8 3.6E-20 1.2E-24 102.3 6.4 79 23-104 6-84 (102)
140 2i2y_A Fusion protein consists 99.8 1.3E-19 4.4E-24 106.4 9.2 80 21-105 68-147 (150)
141 2e44_A Insulin-like growth fac 99.8 1.2E-19 4.1E-24 99.1 8.2 82 21-106 10-92 (96)
142 1x4f_A Matrin 3; structural ge 99.8 1.7E-19 5.9E-24 101.1 8.8 78 22-105 21-101 (112)
143 2cqh_A IGF-II mRNA-binding pro 99.8 1.4E-19 4.6E-24 98.5 8.0 77 22-105 4-82 (93)
144 2lcw_A RNA-binding protein FUS 99.7 1.4E-21 4.7E-26 110.4 0.0 83 23-105 4-94 (116)
145 1sjr_A Polypyrimidine tract-bi 99.8 3.5E-19 1.2E-23 105.5 10.1 80 22-105 42-123 (164)
146 1l3k_A Heterogeneous nuclear r 99.8 5.7E-19 2E-23 107.0 11.1 85 20-105 7-91 (196)
147 2yh0_A Splicing factor U2AF 65 99.8 5.2E-19 1.8E-23 107.3 10.9 82 24-105 112-193 (198)
148 3pgw_S U1-70K; protein-RNA com 99.8 3.5E-19 1.2E-23 119.8 11.0 82 24-105 100-181 (437)
149 2qfj_A FBP-interacting repress 99.8 6.2E-19 2.1E-23 108.2 11.1 82 24-105 123-204 (216)
150 3egn_A RNA-binding protein 40; 99.8 4.2E-20 1.4E-24 107.7 5.5 83 22-105 41-129 (143)
151 2hgn_A Heterogeneous nuclear r 99.8 2.6E-20 8.7E-25 108.2 4.4 81 22-105 42-122 (139)
152 2j8a_A Histone-lysine N-methyl 99.8 3.1E-19 1.1E-23 101.5 8.5 78 27-104 3-94 (136)
153 2hgm_A HNRPF protein, heteroge 99.8 1.2E-19 4E-24 103.8 6.8 81 22-105 38-120 (126)
154 3zzy_A Polypyrimidine tract-bi 99.8 1.3E-18 4.4E-23 99.7 11.1 77 24-105 26-105 (130)
155 1b7f_A Protein (SXL-lethal pro 99.8 1.4E-18 4.7E-23 103.0 11.2 82 22-103 85-168 (168)
156 1l3k_A Heterogeneous nuclear r 99.8 1.9E-18 6.5E-23 104.7 12.0 81 24-105 102-182 (196)
157 2e5g_A U6 snRNA-specific termi 99.8 1E-18 3.6E-23 95.2 9.5 76 24-105 6-81 (94)
158 2dha_A FLJ20171 protein; RRM d 99.8 2.9E-19 1E-23 101.8 7.2 80 23-104 20-103 (123)
159 2qfj_A FBP-interacting repress 99.8 1.5E-19 5E-24 111.0 6.5 81 24-104 26-106 (216)
160 3md3_A Nuclear and cytoplasmic 99.8 9.9E-19 3.4E-23 103.2 9.8 78 27-105 1-78 (166)
161 1x5p_A Negative elongation fac 99.8 4.3E-18 1.5E-22 93.2 11.4 75 23-105 12-86 (97)
162 3nmr_A Cugbp ELAV-like family 99.8 2.1E-18 7.3E-23 102.7 10.7 80 24-104 93-175 (175)
163 1fxl_A Paraneoplastic encephal 99.8 1.6E-18 5.5E-23 102.4 10.1 80 24-103 86-167 (167)
164 3tyt_A Heterogeneous nuclear r 99.8 1.8E-18 6.2E-23 106.2 10.6 75 25-104 3-78 (205)
165 4f02_A Polyadenylate-binding p 99.8 2.1E-18 7.2E-23 106.3 10.8 79 25-105 102-180 (213)
166 2diu_A KIAA0430 protein; struc 99.8 1.3E-18 4.5E-23 93.9 8.5 71 25-105 8-83 (96)
167 2cjk_A Nuclear polyadenylated 99.8 5E-19 1.7E-23 104.8 7.2 80 25-105 86-165 (167)
168 3beg_B Splicing factor, argini 99.8 6.5E-19 2.2E-23 99.3 7.1 74 24-104 14-92 (115)
169 2e5i_A Heterogeneous nuclear r 99.8 1.1E-17 3.7E-22 95.3 11.1 72 28-105 27-101 (124)
170 2cq2_A Hypothetical protein LO 99.8 2.2E-18 7.5E-23 96.7 7.9 79 21-105 20-105 (114)
171 3smz_A Protein raver-1, ribonu 99.8 1.3E-17 4.4E-22 106.3 12.3 83 22-105 180-263 (284)
172 1fje_B Nucleolin RBD12, protei 99.8 7.7E-18 2.6E-22 100.5 10.5 77 24-105 97-173 (175)
173 3d2w_A TAR DNA-binding protein 99.8 4.5E-18 1.5E-22 91.9 8.5 76 21-105 6-83 (89)
174 3pgw_A U1-A; protein-RNA compl 99.8 8.5E-18 2.9E-22 107.1 11.1 82 21-105 4-89 (282)
175 2dnl_A Cytoplasmic polyadenyla 99.8 6E-18 2E-22 95.2 8.8 65 23-88 5-72 (114)
176 2voo_A Lupus LA protein; RNA-b 99.8 1.4E-17 4.8E-22 101.5 11.0 77 26-104 109-185 (193)
177 2bz2_A Negative elongation fac 99.8 9.2E-18 3.1E-22 95.4 9.4 76 22-105 35-110 (121)
178 2hzc_A Splicing factor U2AF 65 99.8 1E-17 3.5E-22 89.8 8.7 72 24-102 4-86 (87)
179 2pe8_A Splicing factor 45; RRM 99.7 2.4E-17 8.1E-22 91.6 10.1 82 24-105 6-93 (105)
180 3nmr_A Cugbp ELAV-like family 99.7 1.1E-17 3.8E-22 99.5 9.2 80 25-104 2-86 (175)
181 2ghp_A U4/U6 snRNA-associated 99.7 1.7E-17 5.7E-22 106.2 10.6 83 22-105 206-290 (292)
182 3smz_A Protein raver-1, ribonu 99.7 5E-17 1.7E-21 103.6 11.9 82 24-105 93-174 (284)
183 2cjk_A Nuclear polyadenylated 99.7 1.2E-17 4.2E-22 98.8 8.5 78 25-104 2-79 (167)
184 2adc_A Polypyrimidine tract-bi 99.7 2.1E-17 7.2E-22 102.8 9.5 80 21-105 29-109 (229)
185 3pgw_A U1-A; protein-RNA compl 99.7 4.6E-17 1.6E-21 103.7 10.9 78 23-105 204-282 (282)
186 1wf0_A TDP-43, TAR DNA-binding 99.7 1.1E-17 3.9E-22 90.0 6.6 75 24-105 3-77 (88)
187 3u1l_A PRE-mRNA-splicing facto 99.7 2.3E-17 7.9E-22 103.2 7.9 78 23-106 131-229 (240)
188 1qm9_A Polypyrimidine tract-bi 99.7 3.4E-17 1.2E-21 99.5 6.8 75 26-105 3-78 (198)
189 1fje_B Nucleolin RBD12, protei 99.7 1.2E-17 4E-22 99.7 4.5 83 21-105 8-90 (175)
190 3sde_A Paraspeckle component 1 99.7 3.6E-16 1.2E-20 98.9 10.5 76 24-105 20-95 (261)
191 2adc_A Polypyrimidine tract-bi 99.7 5.1E-16 1.8E-20 96.5 10.9 77 24-105 149-227 (229)
192 2dit_A HIV TAT specific factor 99.7 7.1E-16 2.4E-20 86.4 10.3 80 22-105 11-101 (112)
193 1qm9_A Polypyrimidine tract-bi 99.7 2.7E-16 9.3E-21 95.5 8.7 77 24-105 118-196 (198)
194 2ghp_A U4/U6 snRNA-associated 99.7 3.6E-16 1.2E-20 100.0 9.0 80 25-105 116-196 (292)
195 3tyt_A Heterogeneous nuclear r 99.7 2.8E-16 9.5E-21 96.5 7.7 77 25-103 122-204 (205)
196 3sde_A Paraspeckle component 1 99.7 1.3E-15 4.6E-20 96.3 10.5 80 25-105 95-178 (261)
197 3v4m_A Splicing factor U2AF 65 99.7 5.8E-16 2E-20 85.9 7.8 80 25-104 4-95 (105)
198 2g4b_A Splicing factor U2AF 65 99.6 2.6E-15 9.1E-20 89.1 9.2 73 26-105 4-87 (172)
199 1jmt_A Splicing factor U2AF 35 99.6 2.5E-16 8.6E-21 87.3 3.9 72 31-103 20-103 (104)
200 2yh0_A Splicing factor U2AF 65 99.6 3.4E-15 1.2E-19 90.4 9.1 74 25-105 3-87 (198)
201 3ue2_A Poly(U)-binding-splicin 99.6 5.1E-15 1.7E-19 83.7 8.2 80 25-104 19-107 (118)
202 3tht_A Alkylated DNA repair pr 99.6 2.1E-14 7.2E-19 93.9 9.0 79 20-104 12-97 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.4E-13 5E-18 75.6 10.1 73 26-105 10-89 (100)
204 3s6e_A RNA-binding protein 39; 99.5 3.4E-13 1.2E-17 75.7 9.9 77 24-104 5-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 1E-12 3.5E-17 70.3 8.3 75 23-106 4-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.4 9E-12 3.1E-16 70.4 8.7 76 22-103 14-93 (121)
207 3dxb_A Thioredoxin N-terminall 99.2 7.8E-11 2.7E-15 72.8 6.8 67 38-104 141-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.1 6.8E-11 2.3E-15 63.6 5.0 74 22-104 11-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 99.1 2E-09 6.9E-14 59.2 9.6 73 23-101 18-95 (117)
210 1whv_A Poly(A)-specific ribonu 98.3 7E-06 2.4E-10 44.2 7.3 54 26-88 16-69 (100)
211 1uw4_A UPF3X; nonsense mediate 98.2 2.7E-05 9.3E-10 41.6 8.0 67 27-93 2-70 (91)
212 1wey_A Calcipressin 1; structu 98.1 1.9E-05 6.4E-10 43.1 6.8 74 25-104 4-82 (104)
213 2dhx_A Poly (ADP-ribose) polym 98.1 0.00012 4E-09 39.9 9.7 70 24-102 6-80 (104)
214 3ctr_A Poly(A)-specific ribonu 98.0 1.5E-05 5.1E-10 43.1 5.0 54 27-89 7-60 (101)
215 2l08_A Regulator of nonsense t 97.8 0.00021 7.2E-09 38.5 7.1 77 27-103 10-93 (97)
216 1wwh_A Nucleoporin 35, nucleop 97.6 0.0013 4.5E-08 36.7 8.4 71 24-102 22-93 (119)
217 3pq1_A Poly(A) RNA polymerase; 96.6 0.0016 5.4E-08 44.4 3.5 55 26-86 53-107 (464)
218 2i2y_A Fusion protein consists 96.4 0.0014 4.7E-08 37.7 1.9 40 64-104 9-49 (150)
219 3p3d_A Nucleoporin 53; structu 96.4 0.0053 1.8E-07 34.8 4.0 77 25-103 6-96 (132)
220 2kn4_A Immunoglobulin G-bindin 95.9 0.012 4.1E-07 33.9 4.2 33 56-90 3-35 (158)
221 3d45_A Poly(A)-specific ribonu 95.1 0.15 5.3E-06 35.2 8.0 55 26-89 440-494 (507)
222 2g0c_A ATP-dependent RNA helic 84.0 2.7 9.2E-05 20.9 4.8 68 28-104 2-75 (76)
223 1xn9_A 30S ribosomal protein S 35.4 53 0.0018 17.5 5.2 49 36-85 28-81 (101)
224 4eyt_A Telomerase associated p 34.1 54 0.0019 17.2 7.9 55 26-88 12-66 (129)
225 2lfv_A Protein DAMX; cell divi 37.8 10 0.00034 20.5 0.0 66 23-92 22-88 (106)
226 1ywx_A 30S ribosomal protein S 31.5 64 0.0022 17.3 5.1 47 36-83 28-79 (102)
227 2v94_A RPS24, 30S ribosomal pr 29.2 72 0.0025 17.2 5.1 47 36-83 37-88 (107)
228 4bby_A Alkyldihydroxyacetoneph 26.3 1.1E+02 0.0036 22.0 4.4 55 33-88 350-408 (658)
229 2g1d_A 30S ribosomal protein S 24.2 62 0.0021 17.2 2.3 14 36-49 29-42 (98)
230 3fut_A Dimethyladenosine trans 22.7 99 0.0034 19.4 3.4 29 27-56 111-139 (271)
231 3lpe_A Putative transcription 22.4 91 0.0031 16.0 3.3 26 67-92 49-74 (92)
232 3uzu_A Ribosomal RNA small sub 21.8 39 0.0013 21.3 1.4 31 27-57 115-145 (279)
233 3ts2_A Protein LIN-28 homolog 20.9 24 0.00083 20.1 0.3 9 68-76 21-29 (148)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.93 E-value=3.1e-25 Score=122.43 Aligned_cols=80 Identities=35% Similarity=0.626 Sum_probs=77.5
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEeccC
Q 034004 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 26 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~~ 105 (106)
+++|||+|||.++++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|++|++.|||..+.|++|+|++++|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 56899999999999999999999999999999999988999999999999999999999999999999999999999987
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.92 E-value=1.2e-23 Score=118.05 Aligned_cols=83 Identities=25% Similarity=0.281 Sum_probs=78.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~ 102 (106)
+++.++|||+|||..+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|++|++.|||..++|+.|+|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999998
Q ss_pred ccC
Q 034004 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 764
No 3
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.90 E-value=4.3e-23 Score=110.59 Aligned_cols=82 Identities=35% Similarity=0.608 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~ 102 (106)
....++|||+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|++|++.|||..+.|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cc
Q 034004 103 AH 104 (106)
Q Consensus 103 ~~ 104 (106)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 4
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.90 E-value=6.2e-23 Score=110.40 Aligned_cols=82 Identities=39% Similarity=0.683 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..|++..+.|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cC
Q 034004 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
++
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 75
No 5
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.90 E-value=1.1e-22 Score=108.60 Aligned_cols=79 Identities=39% Similarity=0.698 Sum_probs=76.1
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEeccC
Q 034004 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 27 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~~ 105 (106)
++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..|+|..++|+.|+|+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 5899999999999999999999999999999999988999999999999999999999999999999999999999875
No 6
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.3e-22 Score=110.58 Aligned_cols=84 Identities=21% Similarity=0.427 Sum_probs=78.7
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
...+..++|||+|||..+++++|+++|+.||.|..+.+..++.++.++++|||+|.+.++|++|++.||+..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34456789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred Eecc
Q 034004 101 NYAH 104 (106)
Q Consensus 101 ~~~~ 104 (106)
++++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 7
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=1.1e-22 Score=111.11 Aligned_cols=86 Identities=34% Similarity=0.515 Sum_probs=80.1
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
...+...++|||+|||..+++++|+++|+.||.|..+.+..++.++.++++|||+|.+.++|++|+..||+..+.|++|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|++++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999874
No 8
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.90 E-value=1.8e-23 Score=120.25 Aligned_cols=87 Identities=33% Similarity=0.533 Sum_probs=80.8
Q ss_pred cccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034004 19 LLSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i 98 (106)
....+.+.++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..|++..+.|++|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455667899999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEEeccC
Q 034004 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
+|+++.+
T Consensus 119 ~V~~a~~ 125 (129)
T 2kxn_B 119 RVDFSIT 125 (129)
T ss_dssp EESCCSS
T ss_pred EEEEecC
Confidence 9999865
No 9
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.90 E-value=2.6e-23 Score=113.85 Aligned_cols=83 Identities=22% Similarity=0.432 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcccCC--eeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCe----eeCCe
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQHGE--IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL----LLDGR 96 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~----~i~~~ 96 (106)
...-.||||+|||+.+++++|+++|++||. +..+.++.++.++.++|||||+|.+.++|++|++.||+. .++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345678999999999999999999999995 678999999989999999999999999999999999986 58999
Q ss_pred EEEEEeccC
Q 034004 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~i~v~~~~~ 105 (106)
+|.|+|++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999874
No 10
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=1.7e-22 Score=111.95 Aligned_cols=84 Identities=30% Similarity=0.483 Sum_probs=79.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
+....++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 91 ~a~~ 94 (103)
T 2cq0_A 91 WAKP 94 (103)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9875
No 11
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.90 E-value=1.2e-22 Score=111.77 Aligned_cols=85 Identities=28% Similarity=0.437 Sum_probs=79.3
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeE--------EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCe
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--------VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL 91 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~ 91 (106)
...+...++|||+|||..+++++|+++|+.||.|.. +.+..++.++.++|+|||+|.+.++|++|++.|+|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345566789999999999999999999999999999 999999888999999999999999999999999999
Q ss_pred eeCCeEEEEEecc
Q 034004 92 LLDGRNIRVNYAH 104 (106)
Q Consensus 92 ~i~~~~i~v~~~~ 104 (106)
.+.|+.|+|++++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 12
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=1.1e-22 Score=113.07 Aligned_cols=86 Identities=43% Similarity=0.652 Sum_probs=80.4
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
.......++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 89 v~~a~~ 94 (105)
T 1x5u_A 89 VNKASA 94 (105)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 999875
No 13
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.89 E-value=1.9e-22 Score=113.78 Aligned_cols=86 Identities=24% Similarity=0.443 Sum_probs=79.9
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
.......++|||+|||..+++++|+++|+.||.|..+.+..++.++.+++||||+|.+.++|++|++.||+..+.|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34445668999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 99 V~~a~~ 104 (115)
T 2cpz_A 99 VQLKRS 104 (115)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999865
No 14
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=5.5e-23 Score=113.89 Aligned_cols=86 Identities=31% Similarity=0.482 Sum_probs=80.4
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
.+.....++|||+|||..+++++|+++|+.||.|..+.+..++.++.++++|||+|.+.++|++|+..||+..+.|+.|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 44556678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 87 V~~a~~ 92 (103)
T 2dnm_A 87 VQVARY 92 (103)
T ss_dssp EEECSS
T ss_pred EEECCc
Confidence 999874
No 15
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=1.5e-23 Score=114.01 Aligned_cols=79 Identities=23% Similarity=0.456 Sum_probs=73.4
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcccC-CeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC-CeeeCCeEEEEEecc
Q 034004 27 TKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD-GLLLDGRNIRVNYAH 104 (106)
Q Consensus 27 ~~l~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~-~~~i~~~~i~v~~~~ 104 (106)
.+|||+|||.++++++|+++|++|| .|..+.++.++.++.++|||||+|.+.++|++|++.++ +..++|++|+|++++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 79999999998899999999999999999999998774 567999999999986
Q ss_pred C
Q 034004 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 82 ~ 82 (91)
T 2lxi_A 82 P 82 (91)
T ss_dssp S
T ss_pred C
Confidence 5
No 16
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.2e-22 Score=113.03 Aligned_cols=84 Identities=29% Similarity=0.465 Sum_probs=78.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..|+|..+.|+.|.|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34456889999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 99 ~a~~ 102 (106)
T 1p27_B 99 WCFV 102 (106)
T ss_dssp ESEE
T ss_pred eecC
Confidence 9764
No 17
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=2e-22 Score=110.83 Aligned_cols=83 Identities=30% Similarity=0.483 Sum_probs=78.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~ 102 (106)
....++|||+|||..+++++|+++|+.||.|..+.+..++.++.++++|||+|.+.++|++|+..||+..+.|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45578999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccC
Q 034004 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+++
T Consensus 85 a~~ 87 (99)
T 1whw_A 85 STI 87 (99)
T ss_dssp CCC
T ss_pred cCC
Confidence 865
No 18
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.89 E-value=3.5e-22 Score=112.60 Aligned_cols=86 Identities=38% Similarity=0.664 Sum_probs=80.1
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
..+....++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|++.|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34455678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|.++++
T Consensus 89 V~~a~~ 94 (115)
T 2dgo_A 89 TNWATR 94 (115)
T ss_dssp EEESSC
T ss_pred EEEccC
Confidence 999865
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=3.6e-22 Score=110.05 Aligned_cols=84 Identities=27% Similarity=0.607 Sum_probs=78.7
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
......++|||+|||..+++++|+++|+.||.|..+.+..++ ++.++++|||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 91 ~~a~~ 95 (100)
T 2do4_A 91 AISNS 95 (100)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99875
No 20
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.89 E-value=2.7e-22 Score=111.73 Aligned_cols=84 Identities=26% Similarity=0.478 Sum_probs=78.6
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
.+.....++|||+|||..+++++|+++|++||.|..+.+..++ ++.++++|||+|.+.++|++|++.|++..+.|+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4455668899999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred EEecc
Q 034004 100 VNYAH 104 (106)
Q Consensus 100 v~~~~ 104 (106)
|+++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99975
No 21
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.89 E-value=2.1e-22 Score=110.33 Aligned_cols=80 Identities=26% Similarity=0.623 Sum_probs=76.7
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEeccC
Q 034004 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 26 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~~ 105 (106)
.++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..|+|..++|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57899999999999999999999999999999999988899999999999999999999999999999999999999875
No 22
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2e-22 Score=110.08 Aligned_cols=82 Identities=30% Similarity=0.662 Sum_probs=77.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
.+.++|||+|||..+++++|+++|+.||.|..+.+..++.++.++++|||+|.+.++|++|+..||+..+.|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45689999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred cC
Q 034004 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
++
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 23
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.89 E-value=1.4e-22 Score=113.27 Aligned_cols=86 Identities=29% Similarity=0.651 Sum_probs=80.3
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
+......++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|++.|+|..+.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44556678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 100 V~~a~~ 105 (108)
T 2jrs_A 100 VGHVTE 105 (108)
T ss_dssp EECSCS
T ss_pred EEEccc
Confidence 999865
No 24
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=3.2e-22 Score=110.06 Aligned_cols=84 Identities=30% Similarity=0.561 Sum_probs=78.4
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
......++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+. +++..+.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 345567899999999999999999999999999999999998889999999999999999999998 9999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 84 ~~a~~ 88 (99)
T 2dgs_A 84 KRAEP 88 (99)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99865
No 25
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.89 E-value=2.4e-22 Score=113.73 Aligned_cols=83 Identities=30% Similarity=0.491 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
+....++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|++.||+..++|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred ecc
Q 034004 102 YAH 104 (106)
Q Consensus 102 ~~~ 104 (106)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 875
No 26
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.89 E-value=3.8e-22 Score=108.97 Aligned_cols=85 Identities=28% Similarity=0.495 Sum_probs=77.7
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
+..+...++|||+|||..+++++|+++|++||.|..+.+..++ ++.++++|||+|.+.++|++|+..||+..+.|+.|+
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 3445567899999999999999999999999999999999988 488999999999999999999999999999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|++++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999864
No 27
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=2.6e-22 Score=110.94 Aligned_cols=84 Identities=35% Similarity=0.580 Sum_probs=78.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|..+.+..++.++.++++|||+|.+.++|++|++.|++..+.|+.|+|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 88 ~a~~ 91 (102)
T 2cqb_A 88 LAKP 91 (102)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 9865
No 28
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.89 E-value=3.6e-22 Score=111.79 Aligned_cols=85 Identities=26% Similarity=0.445 Sum_probs=79.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
......++|||+|||..+++++|+.+|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..|+|..+.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34455789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 101 ~~a~~ 105 (110)
T 1oo0_B 101 DWCFV 105 (110)
T ss_dssp EESEE
T ss_pred EEccc
Confidence 99764
No 29
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=5.8e-22 Score=111.00 Aligned_cols=86 Identities=33% Similarity=0.555 Sum_probs=79.9
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC------Ceee
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD------GLLL 93 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~------~~~i 93 (106)
.......++|||+|||..+++++|+.+|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..++ +..+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 3455567899999999999999999999999999999999998889999999999999999999999999 9999
Q ss_pred CCeEEEEEeccC
Q 034004 94 DGRNIRVNYAHK 105 (106)
Q Consensus 94 ~~~~i~v~~~~~ 105 (106)
.|+.|+|+++.+
T Consensus 89 ~g~~l~v~~a~~ 100 (111)
T 1x4h_A 89 DGRQLKVDLAVT 100 (111)
T ss_dssp SSCEEEEECCCC
T ss_pred cCEEEEEEECCC
Confidence 999999999764
No 30
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=4.1e-22 Score=112.51 Aligned_cols=80 Identities=36% Similarity=0.677 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
.+.++|||+|||.++++++|+++|+.||.|..+.+..+. +.++|||||+|.+.++|++|++.|++..++|+.|+|+++
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 346789999999999999999999999999999999885 347899999999999999999999999999999999987
Q ss_pred cC
Q 034004 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
++
T Consensus 81 ~~ 82 (115)
T 4f25_A 81 KS 82 (115)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 31
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=3.6e-22 Score=111.19 Aligned_cols=87 Identities=23% Similarity=0.532 Sum_probs=80.0
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeec-CCCCCccceEEEEeCCHHHHHHHHHHh-CCeeeCCeE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICD-RVTGQSRGYGFVKFASEAAAGEAIKEM-DGLLLDGRN 97 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~~~fv~f~~~~~a~~a~~~l-~~~~i~~~~ 97 (106)
.......++|||+|||..+++++|+++|+.||.|..+.+..+ +.++.++++|||+|.+.++|++|+..| |+..+.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 345566789999999999999999999999999999999888 678999999999999999999999999 999999999
Q ss_pred EEEEeccCC
Q 034004 98 IRVNYAHKD 106 (106)
Q Consensus 98 i~v~~~~~~ 106 (106)
|+|++++++
T Consensus 89 l~v~~a~~~ 97 (107)
T 2cph_A 89 LVLEWADSE 97 (107)
T ss_dssp CEEEECCCC
T ss_pred EEEEeCCCC
Confidence 999998753
No 32
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.7e-22 Score=109.71 Aligned_cols=82 Identities=40% Similarity=0.673 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEE-EEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~ 102 (106)
.+.++|||+|||..+++++|+++|+.||.|..+ .+..++.++.++++|||+|.+.++|++|+..||+..+.|+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999 9999878999999999999999999999999999999999999999
Q ss_pred ccC
Q 034004 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+.+
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 865
No 33
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=3.3e-22 Score=110.01 Aligned_cols=83 Identities=35% Similarity=0.600 Sum_probs=78.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcccCCee-EEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeE----
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQHGEII-EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN---- 97 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~---- 97 (106)
....++|||+|||..+++++|+++|++||.|. .+.+..++.++.++|+|||+|.+.++|++|+..||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44578999999999999999999999999999 9999999889999999999999999999999999999999998
Q ss_pred EEEEeccC
Q 034004 98 IRVNYAHK 105 (106)
Q Consensus 98 i~v~~~~~ 105 (106)
|+|+++++
T Consensus 86 l~v~~a~~ 93 (99)
T 2div_A 86 FKLNYATY 93 (99)
T ss_dssp CCEEETTC
T ss_pred EEEeecCC
Confidence 99999875
No 34
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.8e-22 Score=110.80 Aligned_cols=84 Identities=48% Similarity=0.750 Sum_probs=78.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|..+.+..++.++.++++|||+|.+.++|++|++.||+..+.|+.|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 88 ~a~~ 91 (102)
T 1x5s_A 88 QAGK 91 (102)
T ss_dssp EEEC
T ss_pred ECCC
Confidence 9865
No 35
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.88 E-value=4.9e-23 Score=119.26 Aligned_cols=89 Identities=36% Similarity=0.569 Sum_probs=81.1
Q ss_pred cccccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCe
Q 034004 17 IRLLSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR 96 (106)
Q Consensus 17 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~ 96 (106)
...++.....++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..|++..+.|+
T Consensus 38 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 38 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 33344555678999999999999999999999999999999999888899999999999999999999999999999999
Q ss_pred EEEEEeccC
Q 034004 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~i~v~~~~~ 105 (106)
.|+|+++++
T Consensus 118 ~l~V~~a~~ 126 (135)
T 2lea_A 118 ELRVQMARY 126 (135)
T ss_dssp CCEEEECCC
T ss_pred EEEEEECCC
Confidence 999999875
No 36
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.88 E-value=5.7e-23 Score=113.45 Aligned_cols=82 Identities=22% Similarity=0.367 Sum_probs=77.1
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCC-e
Q 034004 24 NSRTKLFIGGLSY------DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG-R 96 (106)
Q Consensus 24 ~~~~~l~v~nlp~------~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~-~ 96 (106)
...++|||+|||. .+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467899999999 99999999999999999999999999889999999999999999999999999999999 9
Q ss_pred EEEEEeccC
Q 034004 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~i~v~~~~~ 105 (106)
.|+|+++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999998753
No 37
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.88 E-value=5.1e-23 Score=111.59 Aligned_cols=79 Identities=32% Similarity=0.502 Sum_probs=72.1
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcccC--CeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034004 27 TKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 27 ~~l~v~nlp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~ 104 (106)
.+|||+|||.++++++|+++|+.|| .+..+.+..++.+|.++|+|||+|.+.++|++|++.|||..++|+.|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999998899999999999999999999999999999999999999876
Q ss_pred C
Q 034004 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 5
No 38
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.88 E-value=1.4e-21 Score=105.15 Aligned_cols=82 Identities=37% Similarity=0.650 Sum_probs=75.6
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
..+...++|||+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|++|++ +++..+.|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 455677899999999999999999999999999999999998889999999999999999999996 5888999999999
Q ss_pred Eec
Q 034004 101 NYA 103 (106)
Q Consensus 101 ~~~ 103 (106)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 39
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.88 E-value=1.3e-21 Score=108.64 Aligned_cols=83 Identities=30% Similarity=0.429 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCC---eEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG---RNI 98 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~---~~i 98 (106)
.....++|||+|||..+++++|+++|+.||.|..+.+..++ ++.++|+|||+|.+.++|++|+..||+..+.+ +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34557899999999999999999999999999999999988 78999999999999999999999999999987 999
Q ss_pred EEEeccC
Q 034004 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
+|+++++
T Consensus 90 ~V~~a~~ 96 (105)
T 2dnh_A 90 VVKFADT 96 (105)
T ss_dssp EEEESCS
T ss_pred EEEECcc
Confidence 9999875
No 40
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.88 E-value=9.2e-22 Score=106.20 Aligned_cols=79 Identities=22% Similarity=0.610 Sum_probs=75.6
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEeccC
Q 034004 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 26 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~~ 105 (106)
.++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+ .+++..+.|+.|+|+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 578999999999999999999999999999999999889999999999999999999999 8999999999999999875
No 41
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.88 E-value=5.7e-22 Score=112.10 Aligned_cols=83 Identities=48% Similarity=0.791 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
+....++|||+|||.++++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|++|++.|+|..+.|+.|+|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 82 ~a~~ 85 (116)
T 2fy1_A 82 QAKK 85 (116)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9865
No 42
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.88 E-value=1.7e-21 Score=111.14 Aligned_cols=83 Identities=27% Similarity=0.484 Sum_probs=77.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|..+.+..++ ++.++|+|||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34456899999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++.+
T Consensus 110 ~a~~ 113 (124)
T 2kt5_A 110 LVAS 113 (124)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9865
No 43
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.3e-21 Score=110.52 Aligned_cols=85 Identities=45% Similarity=0.700 Sum_probs=78.8
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
...+...++|||+|||..+++++|+++|+.||.|..+.+..++.++.++++|||+|.+.++|++|+..+++ .+.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34556678999999999999999999999999999999999988899999999999999999999999998 89999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++.+
T Consensus 90 V~~a~~ 95 (116)
T 2cqd_A 90 VNLAYL 95 (116)
T ss_dssp EEESTT
T ss_pred EEEccc
Confidence 999854
No 44
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=1.6e-21 Score=107.99 Aligned_cols=83 Identities=25% Similarity=0.471 Sum_probs=77.0
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
.+....++|||+|||..+++++|+++|+.|| |..+.+..++.++.++|+|||+|.+.++|++|+ .|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3445678999999999999999999999996 999999999888999999999999999999999 79999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 88 ~~a~~ 92 (103)
T 2dng_A 88 DIAEG 92 (103)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99865
No 45
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.88 E-value=1.1e-21 Score=113.78 Aligned_cols=84 Identities=35% Similarity=0.604 Sum_probs=79.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
.+...++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..||+..+.|+.|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44556899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 118 ~a~~ 121 (139)
T 1u6f_A 118 LAAS 121 (139)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9865
No 46
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.88 E-value=3.8e-22 Score=110.97 Aligned_cols=85 Identities=29% Similarity=0.445 Sum_probs=78.8
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeee---CCeE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL---DGRN 97 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i---~~~~ 97 (106)
..+...++|||+|||..+++++|+++|+.||.|..+.+..++.++.++++|||+|.+.++|++|+..||+..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3455678999999999999999999999999999999999988899999999999999999999999999987 8899
Q ss_pred EEEEeccC
Q 034004 98 IRVNYAHK 105 (106)
Q Consensus 98 i~v~~~~~ 105 (106)
|+|+++++
T Consensus 88 l~v~~a~~ 95 (106)
T 2dgp_A 88 IQVKPADS 95 (106)
T ss_dssp CEEEECCC
T ss_pred EEEEECCc
Confidence 99999865
No 47
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=6e-22 Score=108.76 Aligned_cols=82 Identities=28% Similarity=0.524 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCC---CCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRV---TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
...++|||+|||..+++++|+++|+.||.|..+.+..++. ++.++++|||+|.+.++|++|+..|++..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4567899999999999999999999999999999988765 4578999999999999999999999999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 83 ~~a~~ 87 (98)
T 2cpf_A 83 RISER 87 (98)
T ss_dssp ECSSC
T ss_pred EEccC
Confidence 99865
No 48
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=108.17 Aligned_cols=83 Identities=29% Similarity=0.541 Sum_probs=77.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
......++|||+|||..+++++|+++|+.||.|..+.+..+ ++.++++|||+|.+.++|++|+..||+..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34456789999999999999999999999999999999887 7889999999999999999999999999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 88 ~~a~~ 92 (103)
T 2d9p_A 88 ALAQR 92 (103)
T ss_dssp EECSS
T ss_pred EEecc
Confidence 99865
No 49
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1e-21 Score=110.36 Aligned_cols=84 Identities=24% Similarity=0.434 Sum_probs=78.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCee--------EEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeee
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEII--------EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i 93 (106)
.....++|||+|||..+++++|+++|+.||.|. .+.+..++.++.++|+|||+|.+.++|++|+..||+..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 445678999999999999999999999999998 699999888899999999999999999999999999999
Q ss_pred CCeEEEEEeccC
Q 034004 94 DGRNIRVNYAHK 105 (106)
Q Consensus 94 ~~~~i~v~~~~~ 105 (106)
.|+.|+|+++++
T Consensus 91 ~g~~l~V~~a~~ 102 (113)
T 2cpe_A 91 QGSKLKVSLARK 102 (113)
T ss_dssp TTEECEEECSSC
T ss_pred CCCEEEEEECCC
Confidence 999999999865
No 50
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.4e-21 Score=108.42 Aligned_cols=82 Identities=23% Similarity=0.431 Sum_probs=76.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCC-CCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVT-GQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
+....++|||+|||..+++++|+++|+.|| |..+.+..++.+ +.++|+|||+|.+.++|++|+ .|++..+.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 445668999999999999999999999999 999999998876 899999999999999999999 89999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 89 ~~a~~ 93 (104)
T 1wi8_A 89 DVADQ 93 (104)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99765
No 51
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.88 E-value=8.6e-22 Score=116.51 Aligned_cols=81 Identities=28% Similarity=0.512 Sum_probs=76.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcccC--CeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~ 102 (106)
..++|||+|||..+++++|+++|+.|| .|..+.+..++.+|.++|||||+|.+.++|++|+..|+|..++|+.|.|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 357999999999999999999999999 999999999988999999999999999999999999999999999999998
Q ss_pred ccC
Q 034004 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 753
No 52
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.88 E-value=8.9e-22 Score=106.00 Aligned_cols=81 Identities=28% Similarity=0.508 Sum_probs=75.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCC-ccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ-SRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
..++|||+|||.++++++|+++|++||.|..+.+..+..++. ++|+|||+|.+.++|++|+..|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357899999999999999999999999999999988876555 8999999999999999999999999999999999997
Q ss_pred cC
Q 034004 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 53
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.7e-21 Score=106.51 Aligned_cols=84 Identities=29% Similarity=0.525 Sum_probs=76.4
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
+......++|||+|||..+++++|+++|+.||.|..+.+..++.. ++++|||+|.+.++|++|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 445566789999999999999999999999999999999888533 689999999999999999999999999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 87 V~~a~~ 92 (103)
T 2cqi_A 87 VNWATT 92 (103)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999865
No 54
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.6e-22 Score=112.46 Aligned_cols=80 Identities=26% Similarity=0.381 Sum_probs=75.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~ 104 (106)
..++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+ .|++..+.|+.|+|++++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3579999999999999999999999999999999999888999999999999999999999 899999999999999875
Q ss_pred C
Q 034004 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 3
No 55
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.9e-22 Score=111.82 Aligned_cols=82 Identities=32% Similarity=0.700 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|++.|+|..+.|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34578999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred cC
Q 034004 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 86 ~~ 87 (104)
T 1p1t_A 86 AS 87 (104)
T ss_dssp TC
T ss_pred CC
Confidence 75
No 56
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=5.5e-21 Score=105.77 Aligned_cols=84 Identities=30% Similarity=0.618 Sum_probs=76.4
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
.......++|||+|||..+++++|+++|+.||.|..+.+..+.. .++++|||+|.+.++|++|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34455678999999999999999999999999999999988863 3889999999999999999999999999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 87 v~~a~~ 92 (103)
T 2cq3_A 87 VNNATA 92 (103)
T ss_dssp EEECCS
T ss_pred EEEccc
Confidence 999865
No 57
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=3.7e-21 Score=108.19 Aligned_cols=84 Identities=27% Similarity=0.492 Sum_probs=77.7
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
......++|||+|||..+++++|+++|+.||.|..+.+..++ ++.++++|||+|.+.++|++|+..||+..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 344557899999999999999999999999999999999987 6889999999999999999999999999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 89 ~~a~~ 93 (114)
T 2do0_A 89 KMDER 93 (114)
T ss_dssp EECSC
T ss_pred EEccc
Confidence 98763
No 58
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.87 E-value=5.7e-22 Score=108.24 Aligned_cols=83 Identities=14% Similarity=0.184 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~ 102 (106)
.+..++|||+|||..+++++|+++|++||.|..+.+..++.++.++++|||+|.+.++|++|++.||+..+.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34468999999999999999999999999998888888887899999999999999999999999999999999999998
Q ss_pred ccC
Q 034004 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 764
No 59
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.87 E-value=9.2e-22 Score=112.49 Aligned_cols=85 Identities=28% Similarity=0.461 Sum_probs=79.0
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
......++|||+|||..+++++|+.+|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..||+..+.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34455789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++.+
T Consensus 97 ~~a~~ 101 (126)
T 3ex7_B 97 DWCFV 101 (126)
T ss_dssp EESEE
T ss_pred EEecC
Confidence 99764
No 60
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.87 E-value=2.8e-21 Score=112.06 Aligned_cols=83 Identities=35% Similarity=0.602 Sum_probs=77.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
......++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred Eec
Q 034004 101 NYA 103 (106)
Q Consensus 101 ~~~ 103 (106)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 975
No 61
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1e-21 Score=107.85 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=77.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
..+..++|||+|||..+++++|+++|+.||.|..+.+..++.++.++++|||+|.+.++|++|++.||+..+.|+.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34556889999999999999999999999999888778887789999999999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++..
T Consensus 91 ~a~~ 94 (98)
T 2cqp_A 91 LGSG 94 (98)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 9764
No 62
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.87 E-value=1.9e-21 Score=105.58 Aligned_cols=82 Identities=32% Similarity=0.582 Sum_probs=75.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|..+.+..+ ++.++++|||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999998874 78899999999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 82 ~a~~ 85 (92)
T 2dgv_A 82 IDRN 85 (92)
T ss_dssp ECSC
T ss_pred EcCC
Confidence 9875
No 63
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=5.9e-21 Score=103.51 Aligned_cols=82 Identities=20% Similarity=0.393 Sum_probs=76.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
......++|||+|||..+++++|+++|+.+ .|..+.+..+ .++.++|+|||+|.+.++|++|+. +++..+.|+.|.|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 344567899999999999999999999999 9999999998 589999999999999999999999 9999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++++
T Consensus 82 ~~a~~ 86 (91)
T 2dgw_A 82 FREKS 86 (91)
T ss_dssp EEESS
T ss_pred EECCc
Confidence 99865
No 64
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2e-22 Score=108.03 Aligned_cols=81 Identities=27% Similarity=0.438 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
.+.++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|++.|||..+.|+.++++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999999888999999999999999999999999999999999998876
Q ss_pred c
Q 034004 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 65
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.7e-21 Score=105.37 Aligned_cols=79 Identities=16% Similarity=0.265 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 24 NSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
...++|||+|||..+++++|+ ++|++||.|..+.+..++.+ +++|||+|.+.++|++|+..|||..++|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456789999999999999999 99999999999999888744 78999999999999999999999999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 84 V~~a~~ 89 (96)
T 2dgx_A 84 VSLATG 89 (96)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 999865
No 66
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.87 E-value=5.1e-21 Score=113.01 Aligned_cols=82 Identities=28% Similarity=0.519 Sum_probs=78.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||..+++++|+++|+.||.|..+.++.++.++.++++|||+|.+.++|++|+..|++..+.|+.|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred cC
Q 034004 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
++
T Consensus 117 ~~ 118 (156)
T 1h2v_Z 117 AG 118 (156)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 67
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=108.67 Aligned_cols=85 Identities=36% Similarity=0.637 Sum_probs=78.8
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
.......++|||+|||..+++++|+++|+.||.|..+.+..++.++.++++|||+|.+.++|++|+.. ++..+.|+.|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 34556678999999999999999999999999999999999988999999999999999999999998 99999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++.+
T Consensus 89 V~~a~~ 94 (105)
T 2dh8_A 89 PKPCTP 94 (105)
T ss_dssp CCCSCC
T ss_pred EEEccC
Confidence 998764
No 68
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=108.78 Aligned_cols=83 Identities=34% Similarity=0.540 Sum_probs=77.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcc-cCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCee-eCCeEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQ-HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL-LDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~-i~~~~i~ 99 (106)
+....++|||+|||..+++++|+++|+. ||.|..+.+..++ ++.++|+|||+|.+.++|++|+..|++.. +.|+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4456789999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++.+
T Consensus 84 v~~a~~ 89 (104)
T 2dhg_A 84 LSVAIP 89 (104)
T ss_dssp CCBCCC
T ss_pred EEEccC
Confidence 998754
No 69
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8.4e-21 Score=106.04 Aligned_cols=83 Identities=23% Similarity=0.427 Sum_probs=74.7
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
.......++|||+|||..+++++|+++|+.||.|..+.+..+ +.++++|||+|.+.++|++|++.||+..+.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 445556789999999999999999999999999999988543 44789999999999999999999999999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 93 V~~a~~ 98 (109)
T 1x4a_A 93 VEFPRS 98 (109)
T ss_dssp EECCCC
T ss_pred EEEccc
Confidence 999865
No 70
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.3e-21 Score=108.49 Aligned_cols=81 Identities=15% Similarity=0.275 Sum_probs=74.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||..+++++|+.+|++||.|..+.++.++. +.++|+|||+|.+.++|++|+. +++..++|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 344568899999999999999999999999999999999985 8999999999999999999999 89999999999999
Q ss_pred ecc
Q 034004 102 YAH 104 (106)
Q Consensus 102 ~~~ 104 (106)
++.
T Consensus 85 ~~~ 87 (103)
T 1s79_A 85 FKD 87 (103)
T ss_dssp EHH
T ss_pred Ech
Confidence 754
No 71
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.8e-21 Score=108.12 Aligned_cols=84 Identities=30% Similarity=0.627 Sum_probs=76.6
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
.......++|||+|||..+++++|+++|+.||.|..+.+..+. +.++|+|||+|.+.++|++|+..|+|..++|+.|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4455567899999999999999999999999999999998875 34889999999999999999999999999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 101 V~~a~~ 106 (109)
T 2err_A 101 VNNATA 106 (109)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999875
No 72
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.86 E-value=3e-22 Score=115.35 Aligned_cols=86 Identities=22% Similarity=0.412 Sum_probs=78.7
Q ss_pred cccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeE--EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCe----e
Q 034004 19 LLSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL----L 92 (106)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~--~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~----~ 92 (106)
........++|||+|||..+++++|+++|++||.|.. +.++.++.++.++|||||+|.+. +|++|+..||+. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3444566789999999999999999999999999966 99999998999999999999999 999999999999 9
Q ss_pred eCCeEEEEEeccC
Q 034004 93 LDGRNIRVNYAHK 105 (106)
Q Consensus 93 i~~~~i~v~~~~~ 105 (106)
++|+.|+|+++++
T Consensus 95 ~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 95 IDGKTINVEFAKG 107 (131)
T ss_dssp GGGCCCCCEECCC
T ss_pred CCCEEEEEEECCC
Confidence 9999999998764
No 73
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.86 E-value=6.4e-22 Score=109.17 Aligned_cols=84 Identities=24% Similarity=0.406 Sum_probs=73.4
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecC-CCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDR-VTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i 98 (106)
.......++|||+|||..+++++|+++|+.|| |..+.+..++ .++.++|+|||+|.+.++|++|+ .|+|..+.|+.|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34455678999999999999999999999999 9999999887 58999999999999999999999 899999999999
Q ss_pred EEEeccC
Q 034004 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
+|+++++
T Consensus 91 ~V~~a~~ 97 (100)
T 2j76_E 91 RVDVADQ 97 (100)
T ss_dssp CCEECCC
T ss_pred EEEeccC
Confidence 9999875
No 74
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.86 E-value=5.9e-21 Score=113.75 Aligned_cols=83 Identities=27% Similarity=0.456 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~ 102 (106)
....++|||+|||..+++++|+.+|+.||.|..+.+..++.++.++|||||+|.+.+.|++|+..|||..+.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccC
Q 034004 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+.+
T Consensus 149 a~~ 151 (165)
T 1rk8_A 149 CFV 151 (165)
T ss_dssp SEE
T ss_pred ecC
Confidence 764
No 75
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.86 E-value=4.9e-21 Score=107.15 Aligned_cols=85 Identities=36% Similarity=0.584 Sum_probs=73.8
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
...+...++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|++|+..+ +..+.|+.|.
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 334456789999999999999999999999999999999999888999999999999999999999976 5889999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++.+
T Consensus 98 V~~a~~ 103 (109)
T 2rs2_A 98 PKVAFP 103 (109)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 998764
No 76
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.8e-20 Score=103.68 Aligned_cols=84 Identities=29% Similarity=0.497 Sum_probs=76.7
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
.......++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+. ++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 3445567899999999999999999999999999999999998889999999999999999999998 47889999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|.++.+
T Consensus 87 v~~a~~ 92 (103)
T 2cqg_A 87 CKLPNS 92 (103)
T ss_dssp EECCCT
T ss_pred EEecCC
Confidence 999764
No 77
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=6.3e-21 Score=112.72 Aligned_cols=83 Identities=36% Similarity=0.607 Sum_probs=78.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~ 102 (106)
....++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..|||..+.|+.|+|++
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34468999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccC
Q 034004 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+++
T Consensus 147 a~~ 149 (158)
T 2kn4_A 147 ARY 149 (158)
T ss_dssp ECC
T ss_pred CCC
Confidence 865
No 78
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.86 E-value=1.1e-21 Score=111.86 Aligned_cols=80 Identities=25% Similarity=0.650 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~ 104 (106)
..++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+ .|++..++|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3579999999999999999999999999999999999889999999999999999999999 799999999999999986
Q ss_pred C
Q 034004 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 5
No 79
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.2e-21 Score=106.92 Aligned_cols=79 Identities=15% Similarity=0.267 Sum_probs=70.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC--eeeCCeEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LLLDGRNI 98 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~--~~i~~~~i 98 (106)
..+...++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.+++ ..+.|++|
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34556789999999999999999999999999999998764 58999999999999999998864 68999999
Q ss_pred EEEeccC
Q 034004 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
.|+++++
T Consensus 85 ~V~~A~~ 91 (105)
T 1sjq_A 85 YIQFSNH 91 (105)
T ss_dssp CBCCCSS
T ss_pred EEEEcCC
Confidence 9999865
No 80
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.1e-21 Score=107.23 Aligned_cols=83 Identities=27% Similarity=0.448 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcccCC-eeEEEEe-ecCCCCCccceEEEEeCCHHHHHHHHHHhC--CeeeCCeEE
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVI-CDRVTGQSRGYGFVKFASEAAAGEAIKEMD--GLLLDGRNI 98 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~-i~~~~~~-~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~--~~~i~~~~i 98 (106)
....++|||+|||..+++++|+++|+.||. |..+.+. .+..++.++|||||+|.+.++|++|+..|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999888 677778899999999999999999999996 588999999
Q ss_pred EEEeccC
Q 034004 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
+|+++++
T Consensus 85 ~V~~a~~ 91 (109)
T 2dis_A 85 AVDWAEP 91 (109)
T ss_dssp EEEESCS
T ss_pred EEEEcCC
Confidence 9999875
No 81
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.3e-20 Score=106.00 Aligned_cols=84 Identities=21% Similarity=0.479 Sum_probs=77.4
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeee-------
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL------- 93 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i------- 93 (106)
......++|||+|||..+++++|+++|+.||.|..+.+..++ ++.++|+|||+|.+.++|++|+..|||..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 344567899999999999999999999999999999999998 899999999999999999999999999998
Q ss_pred -CCeEEEEEeccC
Q 034004 94 -DGRNIRVNYAHK 105 (106)
Q Consensus 94 -~~~~i~v~~~~~ 105 (106)
.+++|.|+|+++
T Consensus 99 ~~~~~l~v~~a~p 111 (114)
T 1x5o_A 99 APTEPLLCKFSGP 111 (114)
T ss_dssp CCSSCBEEEECCC
T ss_pred CCCCceeEEccCC
Confidence 577899999875
No 82
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.85 E-value=1.4e-21 Score=102.42 Aligned_cols=75 Identities=29% Similarity=0.533 Sum_probs=71.5
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 28 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
+|||+|||.++++++|+++|+++|.|..+.+..++.++.++|+|||+|.+.++|++|++ +++..++|++|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998889999999999999999999998 9999999999999875
No 83
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.85 E-value=1.3e-20 Score=106.84 Aligned_cols=82 Identities=22% Similarity=0.300 Sum_probs=75.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCC---eeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGE---IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i 98 (106)
.....++|||+|||.++++++|+++|+.||. |..+.+..++. +.++|+|||+|.+.++|++|+. +++..++|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3455789999999999999999999999998 89999999885 9999999999999999999999 99999999999
Q ss_pred EEEeccC
Q 034004 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
+|.++.+
T Consensus 91 ~V~~a~~ 97 (118)
T 2db1_A 91 EVFKSHR 97 (118)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9998753
No 84
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=106.03 Aligned_cols=82 Identities=20% Similarity=0.363 Sum_probs=74.5
Q ss_pred CCCceEEEcCCCCCCCHHHHH---HhhcccCCeeEEEEeecCCCC---CccceEEEEeCCHHHHHHHHHHhCCeeeCCeE
Q 034004 24 NSRTKLFIGGLSYDTNETVLK---DAFGQHGEIIEVKVICDRVTG---QSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~---~~f~~~g~i~~~~~~~~~~~~---~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~ 97 (106)
...++|||+|||..+++++|+ ++|++||.|..+.+..+..++ .++|+|||+|.+.++|++|++.||+..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346789999999999999999 999999999999998876543 46699999999999999999999999999999
Q ss_pred EEEEeccC
Q 034004 98 IRVNYAHK 105 (106)
Q Consensus 98 i~v~~~~~ 105 (106)
|+|+++.+
T Consensus 93 l~V~~a~~ 100 (111)
T 2cpi_A 93 LKASLGTT 100 (111)
T ss_dssp EEEESCCC
T ss_pred EEEEeccc
Confidence 99999865
No 85
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.85 E-value=5.9e-21 Score=106.15 Aligned_cols=82 Identities=26% Similarity=0.405 Sum_probs=73.8
Q ss_pred CCCCCceEEEcCCCCCC------CHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCC
Q 034004 22 DSNSRTKLFIGGLSYDT------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG 95 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~ 95 (106)
.....++|||+|||..+ ++++|+.+|++||.|..+.+. +.+|.++|+|||+|.+.++|++|+..|||..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 33446899999999999 789999999999999999887 3478899999999999999999999999999999
Q ss_pred e-EEEEEeccC
Q 034004 96 R-NIRVNYAHK 105 (106)
Q Consensus 96 ~-~i~v~~~~~ 105 (106)
+ .|+|+++..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 8 999998753
No 86
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.85 E-value=9.5e-21 Score=108.56 Aligned_cols=82 Identities=13% Similarity=0.371 Sum_probs=72.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHH----HhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCe
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR 96 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~ 96 (106)
....+.++|||+|||..+++++|+ ++|++||.|..+.+.. ++.++|+|||+|.+.++|+.|+..|||..+.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 344557899999999999998876 6899999998887642 577899999999999999999999999999999
Q ss_pred EEEEEeccC
Q 034004 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~i~v~~~~~ 105 (106)
.|+|+|+++
T Consensus 101 ~l~V~~a~~ 109 (127)
T 2a3j_A 101 PLVITFSET 109 (127)
T ss_dssp CCEEEECCC
T ss_pred EEEEEEccC
Confidence 999999875
No 87
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=106.16 Aligned_cols=80 Identities=36% Similarity=0.599 Sum_probs=75.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~ 104 (106)
..++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+.. ++..+.|+.|+|+++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 357999999999999999999999999999999999988899999999999999999999997 9999999999999976
Q ss_pred C
Q 034004 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 105 ~ 105 (116)
T 1x4b_A 105 A 105 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 88
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=1.8e-20 Score=103.07 Aligned_cols=79 Identities=23% Similarity=0.265 Sum_probs=70.0
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCee--eCCeEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL--LDGRNI 98 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~--i~~~~i 98 (106)
...++.++|||+|||..+++++|+.+|++||.|..+.+.. .+|+|||+|.+.++|++|+..|++.. +.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 3445678999999999999999999999999999998864 35899999999999999999998764 789999
Q ss_pred EEEeccC
Q 034004 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
.|+++++
T Consensus 90 ~V~~S~~ 96 (100)
T 3r27_A 90 FVNYSTS 96 (100)
T ss_dssp EEEECSC
T ss_pred EEEeccc
Confidence 9999875
No 89
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.7e-21 Score=106.66 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=75.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCe-eEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEI-IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
.+...++|||+|||..+++++|+++|+.||.+ ..+.++.++ ++.++|+|||+|.+.++|++|+.. ++..+.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 44557899999999999999999999999999 889999988 899999999999999999999986 999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++.+
T Consensus 89 ~~a~~ 93 (114)
T 2cpy_A 89 HVVTL 93 (114)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98753
No 90
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.85 E-value=6.4e-22 Score=107.10 Aligned_cols=78 Identities=36% Similarity=0.676 Sum_probs=73.3
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEeccC
Q 034004 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 27 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~~ 105 (106)
++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.+ |++|+..|||..++|+.|+|+++.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999888999999999999999 9999999999999999999999864
No 91
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2e-21 Score=102.25 Aligned_cols=76 Identities=39% Similarity=0.672 Sum_probs=72.4
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 27 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
++|||+|||..+++++|+++|+++|.+..+.+..++.++.++|+|||+|.+.++|++|+..++ ..+.|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999998 8899999999986
No 92
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.85 E-value=4.6e-21 Score=104.96 Aligned_cols=83 Identities=25% Similarity=0.505 Sum_probs=73.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHH----HhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCe
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR 96 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~ 96 (106)
++.++.++|||+|||..+++++|+ ++|++||.|..+.+.. ++.++|+|||+|.+.++|++|+..|+|..+.|+
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 345667899999999999999999 9999999999988763 456789999999999999999999999999999
Q ss_pred EEEEEeccCC
Q 034004 97 NIRVNYAHKD 106 (106)
Q Consensus 97 ~i~v~~~~~~ 106 (106)
.|+|++++++
T Consensus 80 ~l~v~~a~~~ 89 (97)
T 1nu4_A 80 PMRIQYAKTD 89 (97)
T ss_dssp ECEEEECSSC
T ss_pred EEEEEEccCC
Confidence 9999998763
No 93
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.7e-21 Score=110.37 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=74.6
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
.+....++|||+|||..+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|+. +|+..++|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 344567899999999999999999999999999875555555689999999999999999999999 9999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++.+
T Consensus 99 ~~a~~ 103 (124)
T 1wel_A 99 HPITK 103 (124)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98753
No 94
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.9e-20 Score=102.52 Aligned_cols=80 Identities=33% Similarity=0.501 Sum_probs=72.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
.+...++|||+|||..+++++|+++|+.||.| .++.+ .++.++++|||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44567899999999999999999999999987 44555 478899999999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 87 ~a~~ 90 (101)
T 2fc9_A 87 LQGP 90 (101)
T ss_dssp ECSS
T ss_pred EcCC
Confidence 9865
No 95
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.85 E-value=7.7e-21 Score=110.08 Aligned_cols=83 Identities=22% Similarity=0.290 Sum_probs=76.0
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCC---eeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGE---IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~ 97 (106)
++....++|||+|||.++++++|+++|+.+|. |..+.++.++. +.++|+|||+|.+.++|++|++ +++..++|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34455789999999999999999999999999 88999999985 9999999999999999999999 9999999999
Q ss_pred EEEEeccC
Q 034004 98 IRVNYAHK 105 (106)
Q Consensus 98 i~v~~~~~ 105 (106)
|+|.++.+
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99998753
No 96
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.1e-20 Score=100.04 Aligned_cols=79 Identities=30% Similarity=0.551 Sum_probs=71.9
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh-CCeeeCCeEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM-DGLLLDGRNI 98 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l-~~~~i~~~~i 98 (106)
++.+...++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|++|+..| ++..+.|++|
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 445566789999999999999999999999999999988764 589999999999999999988 9999999999
Q ss_pred EEEecc
Q 034004 99 RVNYAH 104 (106)
Q Consensus 99 ~v~~~~ 104 (106)
+|+|++
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999975
No 97
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.84 E-value=3.1e-20 Score=114.48 Aligned_cols=83 Identities=29% Similarity=0.557 Sum_probs=76.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~ 102 (106)
..+.++|||+|||.++++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|++|+..+++..+.|+.+++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred ccC
Q 034004 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+..
T Consensus 92 ~~~ 94 (213)
T 4f02_A 92 SQR 94 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
No 98
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.5e-20 Score=102.99 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=71.4
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCC-----
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG----- 95 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~----- 95 (106)
+.....++|||+|||..+++++|+++|+.||.|..+.+..+ ++|||+|.+.++|++|++.||+..+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 82 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 82 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcc
Confidence 33456789999999999999999999999999999988765 799999999999999999999999999
Q ss_pred eEEEEEeccC
Q 034004 96 RNIRVNYAHK 105 (106)
Q Consensus 96 ~~i~v~~~~~ 105 (106)
+.|+|+++++
T Consensus 83 ~~i~V~~a~~ 92 (108)
T 1x4c_A 83 AYIRVKVDGP 92 (108)
T ss_dssp EEEEEEESSC
T ss_pred eEEEEEeCCC
Confidence 9999999765
No 99
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.84 E-value=5e-20 Score=101.06 Aligned_cols=78 Identities=21% Similarity=0.445 Sum_probs=69.9
Q ss_pred ccCCCCCceEEEcCCCC-CCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034004 20 LSDSNSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i 98 (106)
....+..++|||+|||. .+++++|+++|+.||.|..+.+. +|+|||+|.+.++|++|+..|+|..+.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 44555678999999998 99999999999999999999882 6899999999999999999999999999999
Q ss_pred EEEeccC
Q 034004 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
+|+++++
T Consensus 88 ~V~~a~~ 94 (97)
T 2xnq_A 88 ILEVSSS 94 (97)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 9999875
No 100
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.84 E-value=3.2e-20 Score=103.68 Aligned_cols=78 Identities=31% Similarity=0.579 Sum_probs=70.5
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
...+...++|||+|||..+++++|+++|+.||.|..+.+. +|+|||+|.+.++|++|+..|+|..+.|+.|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3445567899999999999999999999999999999886 58999999999999999999999999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 97 V~~a~~ 102 (108)
T 2jvo_A 97 VVYSKL 102 (108)
T ss_dssp EESCSC
T ss_pred EEEecC
Confidence 999875
No 101
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=103.74 Aligned_cols=83 Identities=22% Similarity=0.334 Sum_probs=74.8
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeE-EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
+.....++|||+|||..+++++|+++|+.+|.|.. +.+..+ .++.++|+|||+|.+.++|++|+.. ++..++|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 34456789999999999999999999999999987 888887 5899999999999999999999997 99999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|.++.+
T Consensus 88 v~~~~~ 93 (104)
T 1wg5_A 88 IFKSSR 93 (104)
T ss_dssp EEEECT
T ss_pred EEECCH
Confidence 988654
No 102
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.1e-20 Score=101.40 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=69.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh--CCeeeCCeEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM--DGLLLDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l--~~~~i~~~~i~ 99 (106)
..++.++|||+|||..+++++|+.+|++||.|..+.+..+ +|+|||+|.+.++|++|+..| ++..+.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3345689999999999999999999999999999987654 689999999999999999977 46789999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 85 V~~a~~ 90 (101)
T 2cq1_A 85 IQYSNH 90 (101)
T ss_dssp EEECSC
T ss_pred EEEcCc
Confidence 999875
No 103
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.7e-20 Score=100.18 Aligned_cols=76 Identities=34% Similarity=0.621 Sum_probs=70.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
...+.++|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34567899999999999999999999999999999886 4799999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 76 ~a~~ 79 (90)
T 2dnq_A 76 ASKN 79 (90)
T ss_dssp CSSC
T ss_pred ECCC
Confidence 9765
No 104
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=4.9e-20 Score=101.72 Aligned_cols=82 Identities=37% Similarity=0.632 Sum_probs=73.6
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
......++|||+|||..+++++|+++|+.++ .+.++.++.++.++++|||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445678999999999999999999999774 5667777778899999999999999999999999999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 87 ~~a~~ 91 (102)
T 2fc8_A 87 DWAKP 91 (102)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99875
No 105
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.84 E-value=2.1e-20 Score=104.86 Aligned_cols=80 Identities=21% Similarity=0.226 Sum_probs=71.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccC-CeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
.+...++|||+|||..+++++|+++|+.+| .|..+.+... .++|+|||+|.+.++|++|++.|||..++|+.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 445678999999999999999999999999 8988877432 36899999999999999999999999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++..
T Consensus 100 ~~a~~ 104 (111)
T 2jvr_A 100 ERDDN 104 (111)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 98753
No 106
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=7.8e-20 Score=108.00 Aligned_cols=84 Identities=38% Similarity=0.677 Sum_probs=79.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|||..++|++|+|+
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34557799999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
|+++
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9874
No 107
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.84 E-value=2.9e-20 Score=104.70 Aligned_cols=81 Identities=23% Similarity=0.413 Sum_probs=73.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
+++..++|||+|||..+++++|+.+|+.||.|..+.+..+ +.++|+|||+|.+.++|++|+..|||..+.|+.|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999988765 3458999999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++.+
T Consensus 81 ~a~~ 84 (115)
T 3lqv_A 81 YYNA 84 (115)
T ss_dssp ECCH
T ss_pred EecC
Confidence 9764
No 108
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.5e-20 Score=103.11 Aligned_cols=78 Identities=23% Similarity=0.632 Sum_probs=72.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|..+.+..+ +++|||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4556789999999999999999999999999999988765 5899999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 95 ~a~~ 98 (109)
T 1x4g_A 95 WGKE 98 (109)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9875
No 109
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.84 E-value=1e-20 Score=118.02 Aligned_cols=80 Identities=31% Similarity=0.498 Sum_probs=75.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcccC--CeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~ 102 (106)
..++|||+|||..+++++|+++|+.|| .|..+.++.++.++.++|||||+|.+.++|++||+.||+..|.|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 999999999988999999999999999999999999999999999999998
Q ss_pred cc
Q 034004 103 AH 104 (106)
Q Consensus 103 ~~ 104 (106)
++
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 110
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=103.68 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=69.0
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCe--eeCCeEEE
Q 034004 23 SNSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL--LLDGRNIR 99 (106)
Q Consensus 23 ~~~~~~l~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~--~i~~~~i~ 99 (106)
..+.++|||+|||. .+++++|+.+|++||.|..+.+..+ +++|||+|.+.++|++|++.|++. .+.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34578999999999 9999999999999999999988765 379999999999999999998864 59999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 86 V~~a~~ 91 (102)
T 1x4d_A 86 VHLSQK 91 (102)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 999874
No 111
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.2e-20 Score=101.23 Aligned_cols=78 Identities=28% Similarity=0.547 Sum_probs=70.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeC--CeEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD--GRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~--~~~i~ 99 (106)
...+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|++|++.||+..+. |+.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3445689999999999999999999999999999988653 579999999999999999999999999 99999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 87 V~~a~~ 92 (97)
T 1why_A 87 VDFAKS 92 (97)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999876
No 112
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.83 E-value=9e-20 Score=107.83 Aligned_cols=81 Identities=37% Similarity=0.659 Sum_probs=76.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~ 104 (106)
+.++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|++.|++..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 35789999999999999999999999999999999998899999999999999999999999999999999999999876
Q ss_pred C
Q 034004 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 81 ~ 81 (167)
T 1fxl_A 81 P 81 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 113
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.7e-20 Score=104.83 Aligned_cols=78 Identities=15% Similarity=0.266 Sum_probs=70.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC--eeeCCeEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LLLDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~--~~i~~~~i~ 99 (106)
..++.++|||+|||..+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|++|++.+++ ..+.|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3445789999999999999999999999999999998765 58999999999999999998874 579999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 101 V~~a~~ 106 (119)
T 2ad9_A 101 IQFSNH 106 (119)
T ss_dssp EEECSS
T ss_pred EEEccC
Confidence 999865
No 114
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-19 Score=98.56 Aligned_cols=77 Identities=27% Similarity=0.517 Sum_probs=70.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
......++|||+|||..+++++|+++|+.||.|..+.+. +++|||+|.+.++|++|+..||+..+.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 445667899999999999999999999999999999885 349999999999999999999999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 77 ~~a~~ 81 (92)
T 2dgt_A 77 QLSTS 81 (92)
T ss_dssp EESSC
T ss_pred EEccC
Confidence 99865
No 115
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=103.67 Aligned_cols=78 Identities=24% Similarity=0.379 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||..+++++|+++|+.+ .|..+.++.++ .|.++|+|||+|.+.++|++|+ .+++..++|+.|.|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 345799999999999999999999999 89999999887 4889999999999999999999 59999999999999876
Q ss_pred c
Q 034004 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
.
T Consensus 91 ~ 91 (109)
T 2dnn_A 91 T 91 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 116
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.1e-20 Score=102.40 Aligned_cols=78 Identities=23% Similarity=0.408 Sum_probs=71.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
.+...++|||+|||..+++++|+++|+.||.|..+.+.. .+|+|||+|.+.++|++|+..||+..++|+.|+|+
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 344568999999999999999999999999999998862 46899999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9875
No 117
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=101.23 Aligned_cols=79 Identities=24% Similarity=0.431 Sum_probs=70.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|. +.+..+ .++++|||+|.+.++|++|+..||+..+.|+.|+|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445578999999999999999999999999986 555544 468999999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 90 ~a~~ 93 (97)
T 2e5j_A 90 LARQ 93 (97)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 9875
No 118
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.2e-20 Score=102.75 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=73.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
.+...++|||+|||..+++++|+++|+.+| +..+.++.++ ++.++|+|||+|.+.++|++|++ +|+..+.++.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 445568999999999999999999999999 4599999988 89999999999999999999995 79999999999998
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
.+.+
T Consensus 88 ~~~~ 91 (102)
T 1wez_A 88 LNST 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 8654
No 119
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-21 Score=107.00 Aligned_cols=81 Identities=27% Similarity=0.414 Sum_probs=72.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~ 102 (106)
....++|||+|||..+++++|+++|+.||.+.. .++.+..++.++|||||+|.+.++|++|++ |++..+.|+.|+|++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999999999999999999998876 455555578889999999999999999999 999999999999999
Q ss_pred ccC
Q 034004 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+++
T Consensus 92 a~~ 94 (101)
T 1fj7_A 92 PKG 94 (101)
T ss_dssp CSC
T ss_pred cCC
Confidence 764
No 120
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.5e-21 Score=107.10 Aligned_cols=84 Identities=21% Similarity=0.356 Sum_probs=71.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34456899999999999999999999999998433222221267789999999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 101 ~a~~ 104 (115)
T 2cpx_A 101 FGKN 104 (115)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9865
No 121
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=1.2e-19 Score=97.05 Aligned_cols=74 Identities=16% Similarity=0.294 Sum_probs=68.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~ 104 (106)
...-|||+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.+.++|.+|++.||+..++|+.|+|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 355699999999999999999999999999998855 57999999999999999999999999999999999875
No 122
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.83 E-value=9.3e-21 Score=100.75 Aligned_cols=72 Identities=28% Similarity=0.460 Sum_probs=66.6
Q ss_pred ceEEEcCCCCCC------CHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCe-EEE
Q 034004 27 TKLFIGGLSYDT------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR-NIR 99 (106)
Q Consensus 27 ~~l~v~nlp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~-~i~ 99 (106)
++|||+|||..+ ++++|+++|++||.|..+.+. +.++.++|+|||+|.+.++|++|+..|||..++|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999999999887 34788999999999999999999999999999998 887
Q ss_pred E
Q 034004 100 V 100 (106)
Q Consensus 100 v 100 (106)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 123
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=8.9e-20 Score=100.27 Aligned_cols=78 Identities=31% Similarity=0.569 Sum_probs=71.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|..+.+..+ +++|||+|.+.++|++|++.|++..+.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3345689999999999999999999999999999988654 5899999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 85 ~a~~ 88 (99)
T 2cpj_A 85 FACH 88 (99)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 9865
No 124
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.83 E-value=9.4e-20 Score=108.01 Aligned_cols=81 Identities=33% Similarity=0.531 Sum_probs=76.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~ 104 (106)
+.++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|++.+++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46789999999999999999999999999999999998889999999999999999999999999999999999999976
Q ss_pred C
Q 034004 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 82 ~ 82 (168)
T 1b7f_A 82 P 82 (168)
T ss_dssp C
T ss_pred C
Confidence 4
No 125
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.82 E-value=6.3e-20 Score=110.50 Aligned_cols=81 Identities=27% Similarity=0.499 Sum_probs=76.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||..+++++|+++|+.||.|..+.+..++ ++.++|+|||+|.+.++|++|+..|++..+.|+.|+|+++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 346799999999999999999999999999999999988 8999999999999999999999999999999999999997
Q ss_pred cC
Q 034004 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
..
T Consensus 165 ~~ 166 (177)
T 2f3j_A 165 AS 166 (177)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 126
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=97.74 Aligned_cols=76 Identities=32% Similarity=0.555 Sum_probs=69.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|..+.+.. ++|||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445678999999999999999999999999999998853 489999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 77 ~a~~ 80 (90)
T 2dnp_A 77 LSTK 80 (90)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9865
No 127
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=5.3e-20 Score=100.58 Aligned_cols=80 Identities=30% Similarity=0.512 Sum_probs=71.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
......++|||+|||..+++++|+++|+.||.|..+ ..++.++|+|||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999988766 236778999999999999999999999999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++.+
T Consensus 86 ~~a~~ 90 (96)
T 1fjc_A 86 YYTGE 90 (96)
T ss_dssp EECSS
T ss_pred EEcCC
Confidence 99864
No 128
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.5e-19 Score=97.41 Aligned_cols=75 Identities=35% Similarity=0.569 Sum_probs=68.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccc--CCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQH--GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
....++|||+|||..+++++|+++|+.| |.|..+.+. +++|||+|.+.++|++|+..||+..+.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 889888763 569999999999999999999999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 84 ~~a~~ 88 (99)
T 2cpd_A 84 TLAKP 88 (99)
T ss_dssp ECCCC
T ss_pred EECCC
Confidence 99875
No 129
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9e-20 Score=101.22 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=68.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCe--eeCCeEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL--LLDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~--~i~~~~i~ 99 (106)
...+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|++|+..|++. .+.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3345689999999999999999999999999999887653 589999999999999999988654 58999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 85 V~~a~~ 90 (104)
T 1wex_A 85 FNYSTS 90 (104)
T ss_dssp EEECSS
T ss_pred EEEccC
Confidence 999864
No 130
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.82 E-value=1e-20 Score=99.09 Aligned_cols=75 Identities=28% Similarity=0.506 Sum_probs=70.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 28 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
+|||+|||..+++++|+++|+++|.+..+.+..++.++.++|+|||+|.+.++|++|++. ++..+.|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999888899999999999999999999984 889999999999875
No 131
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.82 E-value=2.3e-19 Score=99.26 Aligned_cols=75 Identities=32% Similarity=0.577 Sum_probs=68.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~ 102 (106)
....++|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+.++|++|+..|++..+.|+.|+|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456889999999999999999999999999998875 35999999999999999999999999999999999
Q ss_pred ccC
Q 034004 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+++
T Consensus 80 a~~ 82 (103)
T 2dgu_A 80 AKP 82 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 865
No 132
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=4.6e-20 Score=103.51 Aligned_cols=75 Identities=16% Similarity=0.183 Sum_probs=69.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~ 104 (106)
+.++|||+|||..+++++|+++|++||.|..+.+.. .+++|||+|.+.++|++|+..|||..+.|+.|.|+|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467899999999999999999999999999988754 45799999999999999999999999999999999986
Q ss_pred C
Q 034004 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 133
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=105.30 Aligned_cols=83 Identities=14% Similarity=0.240 Sum_probs=75.3
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCC---eeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGE---IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~ 97 (106)
.+....++|||+|||.++++++|+++|+.+|. |..+.+..++. |.++|+|||+|.+.++|++|+. +++..++|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34456789999999999999999999999887 89999998885 9999999999999999999999 9999999999
Q ss_pred EEEEeccC
Q 034004 98 IRVNYAHK 105 (106)
Q Consensus 98 i~v~~~~~ 105 (106)
|+|.++.+
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99988753
No 134
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.82 E-value=2.6e-19 Score=106.53 Aligned_cols=81 Identities=28% Similarity=0.525 Sum_probs=76.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|++|+..|||..++|++|.|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 44689999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred c
Q 034004 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 4
No 135
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.82 E-value=2.3e-19 Score=100.35 Aligned_cols=74 Identities=26% Similarity=0.543 Sum_probs=68.6
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034004 24 NSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 24 ~~~~~l~v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~ 102 (106)
...++|||+|||.. +++++|+++|++||.|..+.+ ++++|||+|.+.++|++|+..|++..+.|+.|+|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34589999999999 999999999999999999888 468999999999999999999999999999999999
Q ss_pred ccC
Q 034004 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+++
T Consensus 97 a~~ 99 (110)
T 1wf1_A 97 AGE 99 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 863
No 136
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.82 E-value=2.4e-19 Score=96.62 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=69.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~ 104 (106)
..++|||+|||..+++++|+++|++| .|..+.+. .++|+|||+|.+.++|++|++.||+..+.|++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99888874 468999999999999999999999999999999999986
Q ss_pred CC
Q 034004 105 KD 106 (106)
Q Consensus 105 ~~ 106 (106)
.+
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 137
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=9.9e-20 Score=99.63 Aligned_cols=77 Identities=19% Similarity=0.437 Sum_probs=68.4
Q ss_pred cCCCCCceEEEcCCCC-CCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 21 SDSNSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
...++.++|||+|||. .+++++|+++|++||.|..+.+. +|+|||+|.+.++|++|+..|++..+.|+.|+
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3445678999999998 99999999999999999999883 57999999999999999999999999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 77 V~~a~~ 82 (96)
T 2kvi_A 77 LEVSSS 82 (96)
T ss_dssp EEEEEC
T ss_pred EEEcCc
Confidence 999764
No 138
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=4.9e-20 Score=101.62 Aligned_cols=74 Identities=26% Similarity=0.513 Sum_probs=69.4
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEeccC
Q 034004 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 27 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~~ 105 (106)
++|||+|||..+++++|+++|++||.|..+.+..+ ++++|||+|.+.++|++|+..|++..+.|+.|+|+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 47999999999999999999999999999998776 578999999999999999999999999999999999865
No 139
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.82 E-value=3.6e-20 Score=102.32 Aligned_cols=79 Identities=30% Similarity=0.614 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~ 102 (106)
+...++|||+|||..+++++|+++|+.||.|..+.+..++ ++.++|+|||+|.+.++|++|+. ++..+.|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 99999999999999999999998 88899999999887
Q ss_pred cc
Q 034004 103 AH 104 (106)
Q Consensus 103 ~~ 104 (106)
+.
T Consensus 83 a~ 84 (102)
T 2xs2_A 83 AI 84 (102)
T ss_dssp EE
T ss_pred CC
Confidence 54
No 140
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=1.3e-19 Score=106.37 Aligned_cols=80 Identities=31% Similarity=0.541 Sum_probs=73.3
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
......++|||+|||..+++++|+++|++||.|..+.+..+ ++|||||+|.+.++|+.|+..|||..+.|++|+|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999766 4789999999999999999999999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++++
T Consensus 143 ~~a~~ 147 (150)
T 2i2y_A 143 ELSNG 147 (150)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99875
No 141
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=99.13 Aligned_cols=82 Identities=22% Similarity=0.287 Sum_probs=71.9
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEE-EEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
+.....++|||+|||..+++++|+++|+.||.|..+ .+..++.++ .|||+|.+.++|++|+..||+..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 344457899999999999999999999999999999 477765433 399999999999999999999999999999
Q ss_pred EEeccCC
Q 034004 100 VNYAHKD 106 (106)
Q Consensus 100 v~~~~~~ 106 (106)
|+++.+.
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 9998763
No 142
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=101.09 Aligned_cols=78 Identities=13% Similarity=0.236 Sum_probs=69.3
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC--eeeCCeEE
Q 034004 22 DSNSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LLLDGRNI 98 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~--~~i~~~~i 98 (106)
...+.++|||+|||.+ +++++|+.+|++||.|..+.+.. .+|+|||+|.+.++|++|++.|++ ..+.|++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 4556789999999998 99999999999999999998864 368999999999999999998864 56999999
Q ss_pred EEEeccC
Q 034004 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
+|+++++
T Consensus 95 ~V~~a~~ 101 (112)
T 1x4f_A 95 KVDLSEK 101 (112)
T ss_dssp EEEEECS
T ss_pred EEEECcc
Confidence 9999864
No 143
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=98.45 Aligned_cols=77 Identities=29% Similarity=0.506 Sum_probs=67.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCC-eeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC-eeeCCeEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG-LLLDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~-~~i~~~~i~ 99 (106)
.....++|||+|||..+++++|+++|++||. +..+.+. .+++|||+|.+.++|++|+..||+ ..+.|+.|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3455689999999999999999999999999 5555442 368999999999999999999999 999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 77 v~~a~~ 82 (93)
T 2cqh_A 77 VDYSVS 82 (93)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999865
No 144
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-21 Score=110.38 Aligned_cols=83 Identities=29% Similarity=0.469 Sum_probs=76.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcccCCeeE--------EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeC
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--------VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~ 94 (106)
....++|||+|||..+++++|+++|+.||.|.. +.+..++.++.++|+|||+|.+.++|++|+..|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345678999999999999999999999999988 888888778899999999999999999999999999999
Q ss_pred CeEEEEEeccC
Q 034004 95 GRNIRVNYAHK 105 (106)
Q Consensus 95 ~~~i~v~~~~~ 105 (106)
|+.|+|+++++
T Consensus 84 g~~l~V~~a~~ 94 (116)
T 2lcw_A 84 GNPIKVSFATR 94 (116)
Confidence 99999998764
No 145
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.81 E-value=3.5e-19 Score=105.52 Aligned_cols=80 Identities=15% Similarity=0.344 Sum_probs=70.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCC--eEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG--RNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~--~~i~ 99 (106)
++....+|||+||+..+++++|+++|++||.|..+.+.... .+++|||+|.+.++|++|++.|||..|.| +.|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 34445678999999999999999999999999999886543 46899999999999999999999999965 9999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+|+++
T Consensus 118 V~~Ak~ 123 (164)
T 1sjr_A 118 IDFSKL 123 (164)
T ss_dssp EEECSS
T ss_pred EEEecC
Confidence 999875
No 146
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.81 E-value=5.7e-19 Score=106.97 Aligned_cols=85 Identities=33% Similarity=0.556 Sum_probs=77.2
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 20 LSDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
+.++...++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+.. ++..+.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 34455678999999999999999999999999999999999988899999999999999999999985 88999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|.++.+
T Consensus 86 v~~~~~ 91 (196)
T 1l3k_A 86 PKRAVS 91 (196)
T ss_dssp EEECCC
T ss_pred eecccC
Confidence 988653
No 147
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.81 E-value=5.2e-19 Score=107.31 Aligned_cols=82 Identities=29% Similarity=0.531 Sum_probs=78.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|++|+..|||..++|+.|+|+++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45689999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred cC
Q 034004 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
++
T Consensus 192 ~~ 193 (198)
T 2yh0_A 192 SV 193 (198)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 148
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=3.5e-19 Score=119.85 Aligned_cols=82 Identities=29% Similarity=0.587 Sum_probs=77.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||..+++++|..+|+.||.|..+.|+.++.++.++|||||+|.+.++|++||..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cC
Q 034004 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 180 ~~ 181 (437)
T 3pgw_S 180 RG 181 (437)
T ss_pred CC
Confidence 64
No 149
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.80 E-value=6.2e-19 Score=108.23 Aligned_cols=82 Identities=23% Similarity=0.502 Sum_probs=77.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+..||+..++|+.|+|+++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred cC
Q 034004 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 203 ~~ 204 (216)
T 2qfj_A 203 VT 204 (216)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 150
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=4.2e-20 Score=107.69 Aligned_cols=83 Identities=24% Similarity=0.428 Sum_probs=71.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEE------EEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCC
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEV------KVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG 95 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~------~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~ 95 (106)
...+.++|||+|||..+++++|+.+|+.||.|..+ .+... .++.++|+|||+|.+.++|++|+..|||..+.|
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 34567899999999999999999999999988653 11111 267789999999999999999999999999999
Q ss_pred eEEEEEeccC
Q 034004 96 RNIRVNYAHK 105 (106)
Q Consensus 96 ~~i~v~~~~~ 105 (106)
+.|.|+++++
T Consensus 120 ~~l~V~~a~~ 129 (143)
T 3egn_A 120 KPMVVQFARS 129 (143)
T ss_dssp EECEEEECCC
T ss_pred cEEEEEECCC
Confidence 9999999864
No 151
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.80 E-value=2.6e-20 Score=108.22 Aligned_cols=81 Identities=21% Similarity=0.273 Sum_probs=71.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
.....++|||+|||.++++++|+++|++|| +..+.++.++. +.++|+|||+|.+.++|++|+ .+++..+.++.|+|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 445578999999999999999999999999 77999998874 999999999999999999999 689999999999998
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
.+.+
T Consensus 119 ~a~~ 122 (139)
T 2hgn_A 119 LNST 122 (139)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 7654
No 152
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.1e-19 Score=101.46 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=70.6
Q ss_pred ceEEEcCC----CCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCC----HHH----HHHHHH--HhCCee
Q 034004 27 TKLFIGGL----SYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFAS----EAA----AGEAIK--EMDGLL 92 (106)
Q Consensus 27 ~~l~v~nl----p~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~----~~~----a~~a~~--~l~~~~ 92 (106)
++|||+|| |+.+++.+|+.+|++||.|..+.++.++.+|.++|||||.|.+ ++. |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 9999999999999999999999999999999999999999996 433 788888 789999
Q ss_pred eCCeEEEEEecc
Q 034004 93 LDGRNIRVNYAH 104 (106)
Q Consensus 93 i~~~~i~v~~~~ 104 (106)
|+|++|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998754
No 153
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.80 E-value=1.2e-19 Score=103.81 Aligned_cols=81 Identities=25% Similarity=0.346 Sum_probs=71.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCee--EEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEII--EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~--~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
.....++|||+|||+++++++|+++|+.| .+. .+.++.++. |.++|+|||+|.+.++|++|+.. ++..++|+.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 34456889999999999999999999999 676 889988885 99999999999999999999984 77889999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|..+.+
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 987653
No 154
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.80 E-value=1.3e-18 Score=99.69 Aligned_cols=77 Identities=16% Similarity=0.394 Sum_probs=69.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccce-EEEEeCCHHHHHHHHHHhCCeeeCC--eEEEE
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGY-GFVKFASEAAAGEAIKEMDGLLLDG--RNIRV 100 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~-~fv~f~~~~~a~~a~~~l~~~~i~~--~~i~v 100 (106)
...-.|||+||+..+++++|+++|++||.|..+.+.... +++ |||+|.+.++|+.|++.|||..+.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 344578899999999999999999999999999887643 467 9999999999999999999999988 89999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+|+++
T Consensus 101 ~~ak~ 105 (130)
T 3zzy_A 101 DFSKL 105 (130)
T ss_dssp EECSC
T ss_pred EecCC
Confidence 99875
No 155
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.80 E-value=1.4e-18 Score=102.95 Aligned_cols=82 Identities=28% Similarity=0.580 Sum_probs=76.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCC--eEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG--RNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~--~~i~ 99 (106)
.....++|||+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|||..+.| ++|+
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 34557899999999999999999999999999999999998889999999999999999999999999999987 9999
Q ss_pred EEec
Q 034004 100 VNYA 103 (106)
Q Consensus 100 v~~~ 103 (106)
|++|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.80 E-value=1.9e-18 Score=104.67 Aligned_cols=81 Identities=31% Similarity=0.547 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+.. ++..++|+.|.|+++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3458999999999999999999999999999999999988899999999999999999999986 799999999999987
Q ss_pred cC
Q 034004 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 181 ~~ 182 (196)
T 1l3k_A 181 LS 182 (196)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 157
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=95.16 Aligned_cols=76 Identities=18% Similarity=0.364 Sum_probs=67.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||..+++++|+.+|+.||.|..+ ..++.++. ||||+|.+.++|++|+. |++..++|+.|.|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 345789999999999999999999999999987 45544544 99999999999999999 9999999999999876
Q ss_pred cC
Q 034004 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 80 ~~ 81 (94)
T 2e5g_A 80 EQ 81 (94)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 158
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=101.83 Aligned_cols=80 Identities=25% Similarity=0.357 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcccCCe----eEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQHGEI----IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i 98 (106)
....++|||+|||+++++++|+++|+.||.| ..+.++.+. ++.++|+|||+|.+.++|++|+.. ++..++++.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3456899999999999999999999999875 688888885 899999999999999999999986 9999999999
Q ss_pred EEEecc
Q 034004 99 RVNYAH 104 (106)
Q Consensus 99 ~v~~~~ 104 (106)
.|..+.
T Consensus 98 ~V~~a~ 103 (123)
T 2dha_A 98 ELFRST 103 (123)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 998764
No 159
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.79 E-value=1.5e-19 Score=111.03 Aligned_cols=81 Identities=28% Similarity=0.597 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|++.|++..+.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34679999999999999999999999999999999998888999999999999999999999999999999999999875
Q ss_pred c
Q 034004 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
.
T Consensus 106 ~ 106 (216)
T 2qfj_A 106 S 106 (216)
T ss_dssp S
T ss_pred C
Confidence 4
No 160
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=9.9e-19 Score=103.23 Aligned_cols=78 Identities=24% Similarity=0.544 Sum_probs=72.6
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEeccC
Q 034004 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 27 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~~ 105 (106)
++|||+|||.++++++|+++|++||.|..+.+..++ ++.++|+|||+|.+.++|++|+..+++..+.|+.|.|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 589999999999999999999999999999999887 577999999999999999999999999999999999998753
No 161
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.3e-18 Score=93.17 Aligned_cols=75 Identities=28% Similarity=0.527 Sum_probs=67.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~ 102 (106)
....++|||+|+ .+++++|+++|++||.|..+.+. ..+++|||+|.+.++|++|+..|++..+.|+.|+|++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345689999996 89999999999999999999884 3568999999999999999999999999999999999
Q ss_pred ccC
Q 034004 103 AHK 105 (106)
Q Consensus 103 ~~~ 105 (106)
+++
T Consensus 84 a~~ 86 (97)
T 1x5p_A 84 ARK 86 (97)
T ss_dssp CSS
T ss_pred CCC
Confidence 865
No 162
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.79 E-value=2.1e-18 Score=102.66 Aligned_cols=80 Identities=33% Similarity=0.464 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeC---CeEEEE
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD---GRNIRV 100 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~---~~~i~v 100 (106)
...++|||+|||..+++++|+++|++||.|..+.+..++ ++.++|+|||+|.+.++|++|+..|||..+. +++|.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 356799999999999999999999999999999999886 6889999999999999999999999998765 499999
Q ss_pred Eecc
Q 034004 101 NYAH 104 (106)
Q Consensus 101 ~~~~ 104 (106)
+|++
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 163
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.79 E-value=1.6e-18 Score=102.41 Aligned_cols=80 Identities=36% Similarity=0.629 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCe--EEEEE
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR--NIRVN 101 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~--~i~v~ 101 (106)
...++|||+|||..+++++|+++|++||.+..+.+..++.++.++|+|||+|.+.++|++|++.|||..+.|+ +|+|+
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 4567899999999999999999999999999999999888899999999999999999999999999999996 48888
Q ss_pred ec
Q 034004 102 YA 103 (106)
Q Consensus 102 ~~ 103 (106)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 164
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.79 E-value=1.8e-18 Score=106.24 Aligned_cols=75 Identities=21% Similarity=0.302 Sum_probs=69.7
Q ss_pred CCceEEEcCCC-CCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 25 SRTKLFIGGLS-YDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~nlp-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
+.++|||+||| ..+++++|+++|++||.|..+.+..+ .+|+|||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46789999999 89999999999999999999998765 3689999999999999999999999999999999987
Q ss_pred c
Q 034004 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
+
T Consensus 78 ~ 78 (205)
T 3tyt_A 78 K 78 (205)
T ss_dssp S
T ss_pred c
Confidence 5
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.79 E-value=2.1e-18 Score=106.29 Aligned_cols=79 Identities=37% Similarity=0.690 Sum_probs=73.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~ 104 (106)
...+|||+|||..+++++|+++|+.||.|..+.++.+. +.++|+|||+|.+.++|++|++.|||..++|++|+|++++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35689999999999999999999999999999998875 3478999999999999999999999999999999999976
Q ss_pred C
Q 034004 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 180 ~ 180 (213)
T 4f02_A 180 S 180 (213)
T ss_dssp C
T ss_pred C
Confidence 4
No 166
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=93.94 Aligned_cols=71 Identities=23% Similarity=0.374 Sum_probs=62.9
Q ss_pred CCceEEEcCCCCCCCHHH----HHHhhcccC-CeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 25 SRTKLFIGGLSYDTNETV----LKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
..+.|||+|||..+++++ |+++|+.|| +|..+ ++ |+|||.|.+.++|++|++.|+|..+.|++|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 334499999999999887 558999994 99887 23 8999999999999999999999999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|++++.
T Consensus 78 v~~A~~ 83 (96)
T 2diu_A 78 VSFTPK 83 (96)
T ss_dssp EESSCC
T ss_pred EEecCC
Confidence 999875
No 167
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.78 E-value=5e-19 Score=104.83 Aligned_cols=80 Identities=31% Similarity=0.569 Sum_probs=75.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~ 104 (106)
..++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|++ +++..++|+.|.|+++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35689999999999999999999999999999999988789999999999999999999998 89999999999999987
Q ss_pred C
Q 034004 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 6
No 168
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.78 E-value=6.5e-19 Score=99.32 Aligned_cols=74 Identities=24% Similarity=0.390 Sum_probs=65.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeE-----E
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN-----I 98 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~-----i 98 (106)
...++|||+|||..+++++|+++|++||.|..+.+..+ ++|||+|.+.++|++|++.||+..++|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999988654 79999999999999999999999999987 7
Q ss_pred EEEecc
Q 034004 99 RVNYAH 104 (106)
Q Consensus 99 ~v~~~~ 104 (106)
+|..+.
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 776543
No 169
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=1.1e-17 Score=95.33 Aligned_cols=72 Identities=21% Similarity=0.301 Sum_probs=65.0
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccce-EEEEeCCHHHHHHHHHHhCCeeeCC--eEEEEEecc
Q 034004 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGY-GFVKFASEAAAGEAIKEMDGLLLDG--RNIRVNYAH 104 (106)
Q Consensus 28 ~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~-~fv~f~~~~~a~~a~~~l~~~~i~~--~~i~v~~~~ 104 (106)
.|||+||+..+++++|+++|++||.|..+.+... .|+ |||+|.+.++|+.|++.|||..|.| +.|+|++++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4689999999999999999999999999988652 275 9999999999999999999999987 689999987
Q ss_pred C
Q 034004 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 101 ~ 101 (124)
T 2e5i_A 101 P 101 (124)
T ss_dssp C
T ss_pred C
Confidence 5
No 170
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=96.75 Aligned_cols=79 Identities=16% Similarity=0.312 Sum_probs=68.6
Q ss_pred cCCCCCceEEE--cCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeee-----
Q 034004 21 SDSNSRTKLFI--GGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL----- 93 (106)
Q Consensus 21 ~~~~~~~~l~v--~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i----- 93 (106)
....+.++||| +||+..+++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|++.|||..+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34455788999 77999999999999999999999887753 368999999999999999999999988
Q ss_pred CCeEEEEEeccC
Q 034004 94 DGRNIRVNYAHK 105 (106)
Q Consensus 94 ~~~~i~v~~~~~ 105 (106)
.+++|.|.+++.
T Consensus 94 ~g~~l~v~~a~~ 105 (114)
T 2cq2_A 94 QKITLYLNFVEK 105 (114)
T ss_dssp CEEECEEEEESC
T ss_pred CCcEEEEEeccc
Confidence 678899988753
No 171
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.77 E-value=1.3e-17 Score=106.35 Aligned_cols=83 Identities=22% Similarity=0.352 Sum_probs=77.0
Q ss_pred CCCCCceEEEcCCCCCC-CHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 22 DSNSRTKLFIGGLSYDT-NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
.....++|||+|||..+ ++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|+..|||..++|+.|.|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 44567899999999995 999999999999999999998887 7889999999999999999999999999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
+++.+
T Consensus 259 ~~a~~ 263 (284)
T 3smz_A 259 SFCAP 263 (284)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 99875
No 172
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.76 E-value=7.7e-18 Score=100.50 Aligned_cols=77 Identities=31% Similarity=0.533 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||..+++++|+++|+.+|.|..+ ..++.++|+|||+|.+.++|.+|+..|||..++|+.|+|+++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 356799999999999999999999999988765 447889999999999999999999999999999999999998
Q ss_pred cC
Q 034004 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
++
T Consensus 172 ~~ 173 (175)
T 1fje_B 172 GE 173 (175)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 173
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.76 E-value=4.5e-18 Score=91.89 Aligned_cols=76 Identities=25% Similarity=0.425 Sum_probs=61.8
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCee--eCCeEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL--LDGRNI 98 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~--i~~~~i 98 (106)
..+.+.++|||+|||.++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++ +++.. +.|+.|
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 34566789999999999999999999999999999988764 67999999999999984 44544 569999
Q ss_pred EEEeccC
Q 034004 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
.|.++.+
T Consensus 77 ~v~~a~~ 83 (89)
T 3d2w_A 77 HISNAEP 83 (89)
T ss_dssp EEEECC-
T ss_pred EEEEcCC
Confidence 9998764
No 174
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.76 E-value=8.5e-18 Score=107.07 Aligned_cols=82 Identities=26% Similarity=0.497 Sum_probs=74.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHH----HhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCe
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR 96 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~ 96 (106)
++....++|||+|||..+++++|+ ++|+.||.|..+.+.. ++.++|+|||+|.+.++|++|+..|||..+.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 345668899999999999999977 8999999999988765 677899999999999999999999999999999
Q ss_pred EEEEEeccC
Q 034004 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~i~v~~~~~ 105 (106)
.|+|++++.
T Consensus 81 ~l~v~~a~~ 89 (282)
T 3pgw_A 81 PMRIQYAKT 89 (282)
T ss_pred EEEEEEecc
Confidence 999998764
No 175
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=6e-18 Score=95.19 Aligned_cols=65 Identities=26% Similarity=0.484 Sum_probs=58.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCC---CCccceEEEEeCCHHHHHHHHHHh
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVT---GQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~~~~fv~f~~~~~a~~a~~~l 88 (106)
....++|||+|||..+++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|++|++.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 34568899999999999999999999999999 777777655 789999999999999999999988
No 176
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.76 E-value=1.4e-17 Score=101.45 Aligned_cols=77 Identities=14% Similarity=0.261 Sum_probs=71.0
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034004 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 26 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~ 104 (106)
.++|||+|||..+++++|+.+|++||.|..+.+..+. ++.++|+|||+|.+.++|++|+..++ ..++|+.|.|.+++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 4789999999999999999999999999999999887 68899999999999999999998654 58999999999865
No 177
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.76 E-value=9.2e-18 Score=95.41 Aligned_cols=76 Identities=28% Similarity=0.519 Sum_probs=68.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 22 DSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
.+...++|||+|+ .+++++|+++|+.||.|..+.+. ..+|+|||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3455789999995 69999999999999999998885 356899999999999999999999999999999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
++++
T Consensus 107 ~a~~ 110 (121)
T 2bz2_A 107 IARK 110 (121)
T ss_dssp ECCS
T ss_pred EeCC
Confidence 9865
No 178
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.75 E-value=1e-17 Score=89.82 Aligned_cols=72 Identities=22% Similarity=0.630 Sum_probs=65.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhccc----C-------CeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCee
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQH----G-------EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~ 92 (106)
...++|||+|||..+++++|+++|+.+ | .+..+.+..+ +|+|||+|.+.++|++|+ .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 346789999999999999999999999 8 8888887644 689999999999999999 899999
Q ss_pred eCCeEEEEEe
Q 034004 93 LDGRNIRVNY 102 (106)
Q Consensus 93 i~~~~i~v~~ 102 (106)
+.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999873
No 179
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.75 E-value=2.4e-17 Score=91.58 Aligned_cols=82 Identities=12% Similarity=0.178 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHHhhcccCCeeEEEEeecCCC-CCccceEEEEeCCHHHHHHHHHHhCCeeeCCeE
Q 034004 24 NSRTKLFIGGLSY-----DTNETVLKDAFGQHGEIIEVKVICDRVT-GQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 24 ~~~~~l~v~nlp~-----~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~ 97 (106)
.++++|+|.|+.. .-.+++|++.|++||.|..+.+..++.+ +.++|++||.|.+.++|++|+..|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3467899999963 2368999999999999999999887643 578999999999999999999999999999999
Q ss_pred EEEEeccC
Q 034004 98 IRVNYAHK 105 (106)
Q Consensus 98 i~v~~~~~ 105 (106)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99998753
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.75 E-value=1.1e-17 Score=99.51 Aligned_cols=80 Identities=30% Similarity=0.441 Sum_probs=71.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCC--CccceEEEEeCCHHHHHHHHHHhCCeeeC---CeEEE
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTG--QSRGYGFVKFASEAAAGEAIKEMDGLLLD---GRNIR 99 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~~~~i~---~~~i~ 99 (106)
..++|||+|||.++++++|+++|++||.|..+.+..++.++ .++|+|||+|.+.++|++|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 35789999999999999999999999999999999998666 79999999999999999999999998765 56777
Q ss_pred EEecc
Q 034004 100 VNYAH 104 (106)
Q Consensus 100 v~~~~ 104 (106)
+.++.
T Consensus 82 ~~~~~ 86 (175)
T 3nmr_A 82 MKPAD 86 (175)
T ss_dssp EEECG
T ss_pred Ecccc
Confidence 77654
No 181
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.75 E-value=1.7e-17 Score=106.17 Aligned_cols=83 Identities=24% Similarity=0.418 Sum_probs=74.7
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHhhcccCCeeEEEEeecCC-CCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 22 DSNSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRV-TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
.....++|||+|||.. +++++|+++|+.||.|..+.+..+.. ++.++|+|||+|.+.++|++|+ .|||..+.|+.|.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3445689999999999 99999999999999999999988774 4889999999999999999999 9999999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|+++++
T Consensus 285 V~~a~~ 290 (292)
T 2ghp_A 285 VSLADK 290 (292)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 999875
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.74 E-value=5e-17 Score=103.60 Aligned_cols=82 Identities=21% Similarity=0.391 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
+..++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35679999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred cC
Q 034004 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 173 ~~ 174 (284)
T 3smz_A 173 DA 174 (284)
T ss_dssp CG
T ss_pred CC
Confidence 64
No 183
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.74 E-value=1.2e-17 Score=98.83 Aligned_cols=78 Identities=38% Similarity=0.734 Sum_probs=71.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+.. +..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 357899999999999999999999999999999999988899999999999999999999984 568899998888764
No 184
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.74 E-value=2.1e-17 Score=102.76 Aligned_cols=80 Identities=21% Similarity=0.384 Sum_probs=72.6
Q ss_pred cCCCCCceEEEcCCCC-CCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 21 SDSNSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
...++.++|||+|||. .+++++|+++|+.||.|..+.+..++ +|+|||+|.+.++|++|++.|++..+.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3445678999999999 99999999999999999999997764 67999999999999999999999999999999
Q ss_pred EEeccC
Q 034004 100 VNYAHK 105 (106)
Q Consensus 100 v~~~~~ 105 (106)
|.++.+
T Consensus 104 v~~a~~ 109 (229)
T 2adc_A 104 ITLSKH 109 (229)
T ss_dssp EECCSC
T ss_pred EEEecC
Confidence 998753
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.73 E-value=4.6e-17 Score=103.70 Aligned_cols=78 Identities=28% Similarity=0.494 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeC-CeEEEEE
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD-GRNIRVN 101 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~-~~~i~v~ 101 (106)
....++|||+|||..+++++|+++|+.||.|..+.+..++ +|+|||+|.+.++|++|+..|||..+. |+.|+|+
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 3456889999999999999999999999999999887554 479999999999999999999999999 9999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
|+++
T Consensus 279 ~akk 282 (282)
T 3pgw_A 279 FAKK 282 (282)
T ss_pred EecC
Confidence 9875
No 186
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=89.96 Aligned_cols=75 Identities=25% Similarity=0.475 Sum_probs=63.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||..+++++|+++|+.||.|..+.+..+ ++|+|||+|.+.++|+++... ...+.++.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 34689999999999999999999999999999988654 578999999999999865432 34568999999987
Q ss_pred cC
Q 034004 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 76 ~~ 77 (88)
T 1wf0_A 76 EP 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.72 E-value=2.3e-17 Score=103.17 Aligned_cols=78 Identities=27% Similarity=0.482 Sum_probs=69.8
Q ss_pred CCCCceEEEcCCCCCC---------CHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeee
Q 034004 23 SNSRTKLFIGGLSYDT---------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i 93 (106)
....++|||+||+..+ ++++|+.+|++||.|..+.++.. +|+|||.|.+.++|+.|++.|++..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3456899999999998 79999999999999999988753 68999999999999999999999999
Q ss_pred ------------CCeEEEEEeccCC
Q 034004 94 ------------DGRNIRVNYAHKD 106 (106)
Q Consensus 94 ------------~~~~i~v~~~~~~ 106 (106)
.|+.|.|+|++.+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999998754
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=99.51 Aligned_cols=75 Identities=23% Similarity=0.418 Sum_probs=69.6
Q ss_pred CceEEEcCCCC-CCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034004 26 RTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 26 ~~~l~v~nlp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~ 104 (106)
.++|||+|||. .+++++|+++|+.||.|..+.+..++ +|+|||+|.+.++|++|+..|++..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57899999999 99999999999999999999887764 6799999999999999999999999999999999876
Q ss_pred C
Q 034004 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 78 ~ 78 (198)
T 1qm9_A 78 H 78 (198)
T ss_dssp C
T ss_pred C
Confidence 4
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.70 E-value=1.2e-17 Score=99.72 Aligned_cols=83 Identities=28% Similarity=0.439 Sum_probs=70.3
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEE
Q 034004 21 SDSNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v 100 (106)
.++...++|||+|||..+++++|+++|..+|.+..+ ++.+..++.++|+|||+|.+.++|++|++ |++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 355668899999999999999999999999876542 22333467789999999999999999995 9999999999999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++.+
T Consensus 86 ~~~~~ 90 (175)
T 1fje_B 86 EKPKG 90 (175)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98764
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.69 E-value=3.6e-16 Score=98.92 Aligned_cols=76 Identities=37% Similarity=0.628 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
...++|||+|||.++++++|+.+|+.||.|..+.+..+ +|+|||+|.+.++|++|+..++|..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 45679999999999999999999999999999988543 589999999999999999999999999999999987
Q ss_pred cC
Q 034004 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 191
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.69 E-value=5.1e-16 Score=96.50 Aligned_cols=77 Identities=18% Similarity=0.311 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccC-CeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeC-CeEEEEE
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD-GRNIRVN 101 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~-~~~i~v~ 101 (106)
.+.++|||+|||..+++++|+++|+.|| .|..+.+... .+++|||+|.+.++|.+|+..|+|..+. |+.|+|+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3468899999999999999999999999 9999988543 3589999999999999999999999999 9999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
|+++
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9876
No 192
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.1e-16 Score=86.42 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=67.9
Q ss_pred CCCCCceEEEcCCCCCCC-----------HHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q 034004 22 DSNSRTKLFIGGLSYDTN-----------ETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG 90 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~ 90 (106)
.+.+.++|+|.||..... +++|+++|++||.|..+.+ .++ .++|+|||+|.+.++|++|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445678899999944432 5799999999999999966 433 2789999999999999999999999
Q ss_pred eeeCCeEEEEEeccC
Q 034004 91 LLLDGRNIRVNYAHK 105 (106)
Q Consensus 91 ~~i~~~~i~v~~~~~ 105 (106)
..++|+.|+|.++.+
T Consensus 87 ~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 87 RWFGGRQITAQAWDG 101 (112)
T ss_dssp CEETTEECEEEECCS
T ss_pred CEECCcEEEEEEeCC
Confidence 999999999999764
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.68 E-value=2.7e-16 Score=95.51 Aligned_cols=77 Identities=18% Similarity=0.311 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccC-CeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeC-CeEEEEE
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD-GRNIRVN 101 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~-~~~i~v~ 101 (106)
++.++|||+|||..+++++|+++|+.|| .|..+.+..+ .+|+|||+|.+.++|.+|+..|||..+. |+.|+|+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3478899999999999999999999999 9999988554 2689999999999999999999999999 9999999
Q ss_pred eccC
Q 034004 102 YAHK 105 (106)
Q Consensus 102 ~~~~ 105 (106)
|+++
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9876
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.67 E-value=3.6e-16 Score=100.00 Aligned_cols=80 Identities=13% Similarity=0.323 Sum_probs=69.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcccC-CeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~ 103 (106)
..++|||+|||..+++++|+++|+.|| .|..+.+..++ .+.++|+|||+|.+.++|++|+..|+|..+.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 468999999999999999999999999 99999998877 4778999999999999999999999999999999999987
Q ss_pred cC
Q 034004 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 195 ~~ 196 (292)
T 2ghp_A 195 NP 196 (292)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=2.8e-16 Score=96.50 Aligned_cols=77 Identities=13% Similarity=0.192 Sum_probs=67.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcccCCe--eEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCe----EE
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEI--IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR----NI 98 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~----~i 98 (106)
+.++|||+|||..+++++|+++|++||.| ..+.+..+. +..+|+|||+|.+.++|.+|+..|||..+.|. ++
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 45689999999999999999999999998 788887664 45569999999999999999999999999875 56
Q ss_pred EEEec
Q 034004 99 RVNYA 103 (106)
Q Consensus 99 ~v~~~ 103 (106)
.|+++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66654
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.66 E-value=1.3e-15 Score=96.27 Aligned_cols=80 Identities=29% Similarity=0.449 Sum_probs=71.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC-CeeeC---CeEEEE
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD-GLLLD---GRNIRV 100 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~-~~~i~---~~~i~v 100 (106)
..++|||+|||..+++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|+..|+ +..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 45789999999999999999999999999999999985 89999999999999999999999994 44554 899999
Q ss_pred EeccC
Q 034004 101 NYAHK 105 (106)
Q Consensus 101 ~~~~~ 105 (106)
.++.+
T Consensus 174 ~~~~~ 178 (261)
T 3sde_A 174 EPMEQ 178 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 88653
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.66 E-value=5.8e-16 Score=85.94 Aligned_cols=80 Identities=15% Similarity=0.179 Sum_probs=68.4
Q ss_pred CCceEEEcCC--CCCCC--------HHHHHHhhcccCCeeEEEEeecCCC--CCccceEEEEeCCHHHHHHHHHHhCCee
Q 034004 25 SRTKLFIGGL--SYDTN--------ETVLKDAFGQHGEIIEVKVICDRVT--GQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 25 ~~~~l~v~nl--p~~~~--------~~~l~~~f~~~g~i~~~~~~~~~~~--~~~~~~~fv~f~~~~~a~~a~~~l~~~~ 92 (106)
+++.|.+.|+ |.... .++|++.|++||.|..+.++.+..+ +.++|++||+|.+.++|++|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4667888887 43443 3689999999999999999887643 3578999999999999999999999999
Q ss_pred eCCeEEEEEecc
Q 034004 93 LDGRNIRVNYAH 104 (106)
Q Consensus 93 i~~~~i~v~~~~ 104 (106)
++|+.|+|+++.
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999999865
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.63 E-value=2.6e-15 Score=89.08 Aligned_cols=73 Identities=21% Similarity=0.621 Sum_probs=64.1
Q ss_pred CceEEEcCCCCCCCHHHHHHhhccc----C-------CeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeC
Q 034004 26 RTKLFIGGLSYDTNETVLKDAFGQH----G-------EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 26 ~~~l~v~nlp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~ 94 (106)
.++|||+|||..+++++|+++|+.+ | .+..+.+.. .+|+|||+|.+.++|++|+ .+++..+.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 5789999999999999999999999 6 566665533 4689999999999999999 79999999
Q ss_pred CeEEEEEeccC
Q 034004 95 GRNIRVNYAHK 105 (106)
Q Consensus 95 ~~~i~v~~~~~ 105 (106)
|+.|.|.++..
T Consensus 77 g~~i~v~~~~~ 87 (172)
T 2g4b_A 77 GQSLKIRRPHD 87 (172)
T ss_dssp TEECEEECCSS
T ss_pred CceeeecCCcc
Confidence 99999998653
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.62 E-value=2.5e-16 Score=87.29 Aligned_cols=72 Identities=21% Similarity=0.387 Sum_probs=62.8
Q ss_pred EcCCCCCCCHHHHHHhh------------cccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034004 31 IGGLSYDTNETVLKDAF------------GQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 31 v~nlp~~~~~~~l~~~f------------~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i 98 (106)
+.+||..+++++|++.| ++||.|..+.+..+. .+.++|+|||.|.+.++|++|+..|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666777777776666 999999999998876 57889999999999999999999999999999999
Q ss_pred EEEec
Q 034004 99 RVNYA 103 (106)
Q Consensus 99 ~v~~~ 103 (106)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.62 E-value=3.4e-15 Score=90.41 Aligned_cols=74 Identities=22% Similarity=0.644 Sum_probs=63.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhccc----C-------CeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeee
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQH----G-------EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i 93 (106)
..++|||+|||..+++++|+++|+.| | .+..+.+ +..+|+|||+|.+.++|++|+ .|++..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 35789999999999999999999999 4 4555544 335789999999999999999 7999999
Q ss_pred CCeEEEEEeccC
Q 034004 94 DGRNIRVNYAHK 105 (106)
Q Consensus 94 ~~~~i~v~~~~~ 105 (106)
.|+.|.|.++.+
T Consensus 76 ~g~~i~v~~~~~ 87 (198)
T 2yh0_A 76 QGQSLKIRRPHD 87 (198)
T ss_dssp TTEEEEEECCCC
T ss_pred cCceEEEeCCCC
Confidence 999999998653
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.61 E-value=5.1e-15 Score=83.67 Aligned_cols=80 Identities=18% Similarity=0.285 Sum_probs=68.7
Q ss_pred CCceEEEcCCCC--CC---CHHHHHHhhcccCCeeEEEEeecCC----CCCccceEEEEeCCHHHHHHHHHHhCCeeeCC
Q 034004 25 SRTKLFIGGLSY--DT---NETVLKDAFGQHGEIIEVKVICDRV----TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG 95 (106)
Q Consensus 25 ~~~~l~v~nlp~--~~---~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~ 95 (106)
++++|++.|+-. .+ -+++|++.|++||.|..+.++.++. ++..+|++||.|.+.++|++|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567899999832 22 3689999999999999999988764 34567999999999999999999999999999
Q ss_pred eEEEEEecc
Q 034004 96 RNIRVNYAH 104 (106)
Q Consensus 96 ~~i~v~~~~ 104 (106)
+.|.|+++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999864
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.56 E-value=2.1e-14 Score=93.95 Aligned_cols=79 Identities=14% Similarity=0.268 Sum_probs=65.7
Q ss_pred ccCCCCCceEEEcC--CCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeC---
Q 034004 20 LSDSNSRTKLFIGG--LSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD--- 94 (106)
Q Consensus 20 ~~~~~~~~~l~v~n--lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~--- 94 (106)
.....++.+|||+| |+..+++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|++.|||..+.
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 34456678999998 578999999999999999998876643 4689999999999999999999999873
Q ss_pred Ce--EEEEEecc
Q 034004 95 GR--NIRVNYAH 104 (106)
Q Consensus 95 ~~--~i~v~~~~ 104 (106)
|+ .+.+.+++
T Consensus 86 g~~~~ly~~~~~ 97 (345)
T 3tht_A 86 GQKITLYLNFVE 97 (345)
T ss_dssp SCEEECEEEECS
T ss_pred CCceEEEEEEee
Confidence 34 56777654
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-13 Score=75.57 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=60.0
Q ss_pred CceEEEcCCC-------CCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034004 26 RTKLFIGGLS-------YDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 26 ~~~l~v~nlp-------~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i 98 (106)
..++-|.-.+ ..+++++|+++|++||.|..+.+. +.++|||||+|.+.++|+.|+..+++ +.+++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4455555433 458999999999999999999886 34789999999999999999997544 679999
Q ss_pred EEEeccC
Q 034004 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~~~~ 105 (106)
+|+|+++
T Consensus 83 ~V~~a~~ 89 (100)
T 2d9o_A 83 KISWLEG 89 (100)
T ss_dssp EEECSSC
T ss_pred EEEEccC
Confidence 9999765
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.51 E-value=3.4e-13 Score=75.74 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=63.5
Q ss_pred CCCceEEEcCCCCCC----------CHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeee
Q 034004 24 NSRTKLFIGGLSYDT----------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~----------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i 93 (106)
.+++.|.+.|+=..- -+++|++.|++||.|..+.+..+. .+|++||.|.+.++|++|+..|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 345677887763221 136889999999999999886553 489999999999999999999999999
Q ss_pred CCeEEEEEecc
Q 034004 94 DGRNIRVNYAH 104 (106)
Q Consensus 94 ~~~~i~v~~~~ 104 (106)
+|+.|.|+++.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999864
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1e-12 Score=70.32 Aligned_cols=75 Identities=20% Similarity=0.312 Sum_probs=63.0
Q ss_pred CCCCceEEEcCCC----CCCCH----HHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeC
Q 034004 23 SNSRTKLFIGGLS----YDTNE----TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 23 ~~~~~~l~v~nlp----~~~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~ 94 (106)
.++..||.|+..+ .+... .+|.+.|++||.+..+++..++ +||+|.+.++|.+|+. |+|..++
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 3456678887665 23333 7799999999999999997764 8999999999999998 9999999
Q ss_pred CeEEEEEeccCC
Q 034004 95 GRNIRVNYAHKD 106 (106)
Q Consensus 95 ~~~i~v~~~~~~ 106 (106)
|+.|+|+++.+|
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999998875
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=9e-12 Score=70.36 Aligned_cols=76 Identities=21% Similarity=0.221 Sum_probs=65.9
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCC-HHHHHHHHHHhC--CeeeCCeE
Q 034004 22 DSNSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFAS-EAAAGEAIKEMD--GLLLDGRN 97 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~-~~~a~~a~~~l~--~~~i~~~~ 97 (106)
.-+..+.|+|+||+.. ++.++|+.+|+.||.|.++.+..+.. .|||.|.+ ...|..++..++ +..|.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3456789999999999 99999999999999999999987763 59999999 899999999984 66788888
Q ss_pred EEEEec
Q 034004 98 IRVNYA 103 (106)
Q Consensus 98 i~v~~~ 103 (106)
+.++..
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 887653
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.17 E-value=7.8e-11 Score=72.77 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=59.4
Q ss_pred CCHHHHHHhhcccCCeeEEEEeecCC----CCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034004 38 TNETVLKDAFGQHGEIIEVKVICDRV----TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 38 ~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~~~~ 104 (106)
-.+++|+..|++||.|..+.+..+.. ++.++|++||+|.+.++|++|+..|||..+.|+.|.+++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 34688999999999999999885543 44789999999999999999999999999999999999864
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=6.8e-11 Score=63.60 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=61.7
Q ss_pred CCCCCceEEEcCCCCC-----CCH----HHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCee
Q 034004 22 DSNSRTKLFIGGLSYD-----TNE----TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 22 ~~~~~~~l~v~nlp~~-----~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~ 92 (106)
-.++..||.|..++.. ... .+|.+.|+.||.+..+++..++ +||+|.+.++|.+|++ |+|..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3456778999877642 222 5688999999999999997774 9999999999999998 99999
Q ss_pred eCCeEEEEEecc
Q 034004 93 LDGRNIRVNYAH 104 (106)
Q Consensus 93 i~~~~i~v~~~~ 104 (106)
++|+.|+|++-.
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998744
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.11 E-value=2e-09 Score=59.18 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=65.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhccc-----CCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeE
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQH-----GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~ 97 (106)
.+..+++-+-|||..++.+.|+.++.++ |.+..+.+..+. +.|+|+|.+...|.+|.-.|+|.+++|++
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 4457889999999999999999999999 999998887775 47999999999999999999999999999
Q ss_pred EEEE
Q 034004 98 IRVN 101 (106)
Q Consensus 98 i~v~ 101 (106)
|++.
T Consensus 92 Lr~g 95 (117)
T 2l9w_A 92 IRSG 95 (117)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9985
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.28 E-value=7e-06 Score=44.24 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=46.0
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q 034004 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 26 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 88 (106)
.+.+++ .+|+++...+|.++|+.|| -..|.++.+- .|||.|.+++.|..|+.++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 455566 9999999999999999999 4456777764 7999999999999999876
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.16 E-value=2.7e-05 Score=41.64 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=55.9
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCC--ccceEEEEeCCHHHHHHHHHHhCCeee
Q 034004 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ--SRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 27 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~~~~fv~f~~~~~a~~a~~~l~~~~i 93 (106)
++|-|++||++.+++++.+.++....+....++..+.+.+ ..+-|+|.|.+.+++......++|..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 4688999999999999999999988777777766664433 234589999999999999999999975
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.11 E-value=1.9e-05 Score=43.13 Aligned_cols=74 Identities=11% Similarity=0.109 Sum_probs=60.4
Q ss_pred CCceEEEcCCCCCCC-----HHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEE
Q 034004 25 SRTKLFIGGLSYDTN-----ETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~-----~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~ 99 (106)
.+.+|+|.||+..+- .+.++.+|..|++.......... .-..|.|.++++|.+|-..||+..+.|..++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 456899999988652 25779999999988776665543 1368999999999999999999999999999
Q ss_pred EEecc
Q 034004 100 VNYAH 104 (106)
Q Consensus 100 v~~~~ 104 (106)
|-++.
T Consensus 78 ~YFgq 82 (104)
T 1wey_A 78 LYFAQ 82 (104)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 98765
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=0.00012 Score=39.90 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=55.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcc---c--CCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEE
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQ---H--GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~---~--g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i 98 (106)
....+|.|.|||..+.++.|+-+|.. . |.+..+.... +.|+|.|.+...|++.++. ..+.+.+..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 44678999999999999999999976 2 4566665522 4799999999999999973 2466777887
Q ss_pred EEEe
Q 034004 99 RVNY 102 (106)
Q Consensus 99 ~v~~ 102 (106)
.|..
T Consensus 77 sV~P 80 (104)
T 2dhx_A 77 SLRP 80 (104)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7764
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=98.01 E-value=1.5e-05 Score=43.10 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=46.1
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q 034004 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD 89 (106)
Q Consensus 27 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 89 (106)
+.+++ .+|.++...+|.++|+.|| -..|.++.+- .||+.|.+++.|..|+.++.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34556 9999999999999999998 5567777764 79999999999999998774
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.78 E-value=0.00021 Score=38.55 Aligned_cols=77 Identities=12% Similarity=0.114 Sum_probs=54.4
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCC--ccceEEEEeCCHHHHHHHHHHhCCeee-CC----eEEE
Q 034004 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ--SRGYGFVKFASEAAAGEAIKEMDGLLL-DG----RNIR 99 (106)
Q Consensus 27 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~~~~fv~f~~~~~a~~a~~~l~~~~i-~~----~~i~ 99 (106)
-+|.|+.||++.+++++.+.++..-......++..+.+.+ ...-|+|.|.+.+++....+.++|..+ +. .+..
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~ 89 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAV 89 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeE
Confidence 3588999999999999888887765543333333332222 223479999999999999999999985 32 2455
Q ss_pred EEec
Q 034004 100 VNYA 103 (106)
Q Consensus 100 v~~~ 103 (106)
|++|
T Consensus 90 VE~A 93 (97)
T 2l08_A 90 VEFA 93 (97)
T ss_dssp EEEC
T ss_pred EEec
Confidence 5554
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.55 E-value=0.0013 Score=36.73 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=54.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCC-eEEEEEe
Q 034004 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG-RNIRVNY 102 (106)
Q Consensus 24 ~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~-~~i~v~~ 102 (106)
...+-|.|-+.|+.. ...+-+.|.++|.|....... ....-.|.|+++.+|++||. .||..+.+ ..|-|..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 346678888999986 456677888999998876521 23578899999999999998 69999875 5565554
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.64 E-value=0.0016 Score=44.44 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=41.3
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHH
Q 034004 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIK 86 (106)
Q Consensus 26 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~ 86 (106)
.+.|+|. .|..+++.+|.++|++||.|..+-+..+. ..|+.|+|.+.++++.++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4789997 79999999999999999999998776543 3699999999999887764
No 218
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.42 E-value=0.0014 Score=37.70 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=35.2
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHh-CCeeeCCeEEEEEecc
Q 034004 64 TGQSRGYGFVKFASEAAAGEAIKEM-DGLLLDGRNIRVNYAH 104 (106)
Q Consensus 64 ~~~~~~~~fv~f~~~~~a~~a~~~l-~~~~i~~~~i~v~~~~ 104 (106)
..+.+|+++++|.+.+.|++|++.+ |+..++| .+.+.++.
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~ 49 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDAT 49 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccccc
Confidence 3457889999999999999999999 9999999 89888764
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.37 E-value=0.0053 Score=34.85 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=50.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhcccCCeeE-EEEeec--------CCCCC-----ccceEEEEeCCHHHHHHHHHHhCC
Q 034004 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICD--------RVTGQ-----SRGYGFVKFASEAAAGEAIKEMDG 90 (106)
Q Consensus 25 ~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~-~~~~~~--------~~~~~-----~~~~~fv~f~~~~~a~~a~~~l~~ 90 (106)
....|.|-+.|+..... +-+.|+++|.|.. ...... +...+ ..+.-.|.|+++.+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 34556677888877655 4567888998855 111100 00011 23456899999999999998 699
Q ss_pred eeeCCeEEEEEec
Q 034004 91 LLLDGRNIRVNYA 103 (106)
Q Consensus 91 ~~i~~~~i~v~~~ 103 (106)
..+.|..|-|...
T Consensus 84 ~ii~G~mIGV~Py 96 (132)
T 3p3d_A 84 AVFNGVLLGVIPY 96 (132)
T ss_dssp CEETTEECEEEEC
T ss_pred eEeCcEEEEEEEC
Confidence 9999987766643
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.94 E-value=0.012 Score=33.90 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=26.2
Q ss_pred EEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCC
Q 034004 56 VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG 90 (106)
Q Consensus 56 ~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~ 90 (106)
+.+.++. ...+|++||+|.+.+.|++|+..+++
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhcc
Confidence 3445553 35889999999999999999987764
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.13 E-value=0.15 Score=35.18 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=43.9
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhC
Q 034004 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD 89 (106)
Q Consensus 26 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 89 (106)
+..++++ +|..+...+|.+.|+.+|.+ .+.+..+. .|+|.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 4556665 89999999999999999954 44554442 69999999999999998885
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=83.98 E-value=2.7 Score=20.87 Aligned_cols=68 Identities=16% Similarity=0.306 Sum_probs=38.5
Q ss_pred eEEEc-CCCCCCCHHHHHHhhcccC-----CeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034004 28 KLFIG-GLSYDTNETVLKDAFGQHG-----EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 28 ~l~v~-nlp~~~~~~~l~~~f~~~g-----~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~~~~i~~~~i~v~ 101 (106)
++++. +-...+...+|..++..-+ .|-.+.+.. .+.||+... ..+..++..|++..+.|+.+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 45553 2334466667777665433 344455522 367887764 34666788888999999999888
Q ss_pred ecc
Q 034004 102 YAH 104 (106)
Q Consensus 102 ~~~ 104 (106)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 765
No 223
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=35.36 E-value=53 Score=17.53 Aligned_cols=49 Identities=8% Similarity=0.245 Sum_probs=27.6
Q ss_pred CCCCHHHHHHhhcc-cC---CeeEE-EEeecCCCCCccceEEEEeCCHHHHHHHH
Q 034004 36 YDTNETVLKDAFGQ-HG---EIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEAI 85 (106)
Q Consensus 36 ~~~~~~~l~~~f~~-~g---~i~~~-~~~~~~~~~~~~~~~fv~f~~~~~a~~a~ 85 (106)
.+++..+|++.++. |+ +...+ .+......|+..|+|.| |.+.+.|.+.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 45677777777764 33 33333 44444445556666643 66666665443
No 224
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=34.09 E-value=54 Score=17.24 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=40.8
Q ss_pred CceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q 034004 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 26 ~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 88 (106)
.+-+-+-|+|..+-..++--..+..|---.+.... |-|.+.|.+.+....|+..|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 45677889999998887766666666555554422 45899999999999998766
No 225
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=37.76 E-value=10 Score=20.50 Aligned_cols=66 Identities=17% Similarity=0.081 Sum_probs=37.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeecCCCCCcc-ceEEEEeCCHHHHHHHHHHhCCee
Q 034004 23 SNSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSR-GYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 23 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~l~~~~ 92 (106)
+....||.+... ...+++..|....+ +..+.+.....+|+.- -.-+-.|.+.+.|..|+..|....
T Consensus 22 p~~~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 22 PSSHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 334556666444 33556677766654 2334333332233221 123568999999999999886443
No 226
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=31.52 E-value=64 Score=17.27 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=27.4
Q ss_pred CCCCHHHHHHhhcc-cC---CeeEE-EEeecCCCCCccceEEEEeCCHHHHHH
Q 034004 36 YDTNETVLKDAFGQ-HG---EIIEV-KVICDRVTGQSRGYGFVKFASEAAAGE 83 (106)
Q Consensus 36 ~~~~~~~l~~~f~~-~g---~i~~~-~~~~~~~~~~~~~~~fv~f~~~~~a~~ 83 (106)
.+++..+|+..++. |+ +...+ .+......|+..|+|.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677888877764 33 23333 44555445566666654 667776654
No 227
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=29.25 E-value=72 Score=17.21 Aligned_cols=47 Identities=11% Similarity=0.004 Sum_probs=26.6
Q ss_pred CCCCHHHHHHhhcc-cC---CeeEE-EEeecCCCCCccceEEEEeCCHHHHHH
Q 034004 36 YDTNETVLKDAFGQ-HG---EIIEV-KVICDRVTGQSRGYGFVKFASEAAAGE 83 (106)
Q Consensus 36 ~~~~~~~l~~~f~~-~g---~i~~~-~~~~~~~~~~~~~~~fv~f~~~~~a~~ 83 (106)
.+++..+|++.++. |+ +...+ .+......|+..|+|.| |++.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35667777777664 43 23333 44444445556666654 677776664
No 228
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=26.33 E-value=1.1e+02 Score=21.96 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHhhc----ccCCeeEEEEeecCCCCCccceEEEEeCCHHHHHHHHHHh
Q 034004 33 GLSYDTNETVLKDAFG----QHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 33 nlp~~~~~~~l~~~f~----~~g~i~~~~~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 88 (106)
..+.+.+-.+|..+|. .+|-|..+.+...+ -.....++++.|.+.+++..++..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHH
Confidence 4455555567777773 45677777776555 2335567788999999888887654
No 229
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=24.15 E-value=62 Score=17.15 Aligned_cols=14 Identities=7% Similarity=0.195 Sum_probs=9.2
Q ss_pred CCCCHHHHHHhhcc
Q 034004 36 YDTNETVLKDAFGQ 49 (106)
Q Consensus 36 ~~~~~~~l~~~f~~ 49 (106)
.+++..++++.++.
T Consensus 29 ~tpsk~eirekLA~ 42 (98)
T 2g1d_A 29 RTPSREEIKELIAK 42 (98)
T ss_dssp SCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 35667777777654
No 230
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=22.67 E-value=99 Score=19.36 Aligned_cols=29 Identities=14% Similarity=0.383 Sum_probs=22.7
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcccCCeeEE
Q 034004 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEV 56 (106)
Q Consensus 27 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~ 56 (106)
.-+.|+|+|.+++...|..++.. ..+...
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 45679999999999999998876 545443
No 231
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=22.43 E-value=91 Score=16.00 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=21.5
Q ss_pred ccceEEEEeCCHHHHHHHHHHhCCee
Q 034004 67 SRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 67 ~~~~~fv~f~~~~~a~~a~~~l~~~~ 92 (106)
..||-||++...++...+++...|..
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCce
Confidence 68999999999998888887666653
No 232
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=21.80 E-value=39 Score=21.28 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=23.2
Q ss_pred ceEEEcCCCCCCCHHHHHHhhcccCCeeEEE
Q 034004 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVK 57 (106)
Q Consensus 27 ~~l~v~nlp~~~~~~~l~~~f~~~g~i~~~~ 57 (106)
....|+|||.+++...|.+++.....+....
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~ 145 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQH 145 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEE
Confidence 3467899999999999999987544444443
No 233
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=20.85 E-value=24 Score=20.10 Aligned_cols=9 Identities=33% Similarity=1.025 Sum_probs=5.8
Q ss_pred cceEEEEeC
Q 034004 68 RGYGFVKFA 76 (106)
Q Consensus 68 ~~~~fv~f~ 76 (106)
+||+||.-.
T Consensus 21 kGfGFI~~~ 29 (148)
T 3ts2_A 21 MGFGFLSMT 29 (148)
T ss_dssp TTEEEEEEE
T ss_pred CCeeEEeeC
Confidence 567777644
Done!