BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034005
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LE54|SP1L2_ARATH Protein SPIRAL1-like 2 OS=Arabidopsis thaliana GN=SP1L2 PE=2 SV=1
Length = 110
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/111 (70%), Positives = 87/111 (78%), Gaps = 6/111 (5%)
Query: 1 MGRGVSSGGGQSSLGYLFSDGEAPKPAA-----KEGQAQNNAPTQKPAPVAQPVDITKQL 55
MGRGVS+GGGQSSLGYLF GEAPK AA E ++ +AP + A A VD KQ+
Sbjct: 1 MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAA-AANAVDSIKQV 59
Query: 56 PAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGGSN 106
PAG+NS S NNYMRA+GQNTGNFITDRPSTKVH+APGGGSSL YLFGGGSN
Sbjct: 60 PAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGGSN 110
>sp|B3H4F1|SP1L1_ARATH Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1
Length = 113
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/116 (68%), Positives = 87/116 (75%), Gaps = 18/116 (15%)
Query: 1 MGRGVSSGGGQSSLGYLFSDGEAPKPAAKEGQAQNNAP---------TQKPAP---VAQP 48
MGRGVS GGGQSSLGYLF GEAPKPA NNAP + P+P AQ
Sbjct: 1 MGRGVSVGGGQSSLGYLFGSGEAPKPAI------NNAPAPSSETLPISADPSPKHVAAQT 54
Query: 49 VDITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGG 104
V++TKQ+PAGIN +S NNY+RADGQNTGNF+TDRPSTKVHAAPGGGSSL YLFGGG
Sbjct: 55 VNVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGG 110
>sp|Q2QQ99|SP1L3_ORYSJ Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica
GN=Os12g0502000 PE=2 SV=1
Length = 101
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/88 (63%), Positives = 63/88 (71%), Gaps = 7/88 (7%)
Query: 16 YLFSDGEAPKPAAKEGQAQNNAPTQKPAPVAQPVDITKQLPAGINSTSMNNYMRADGQNT 75
YLF GEAPK A K AP QKPAP + + K++PAGI S+ NNYMRA+GQN
Sbjct: 16 YLFGGGEAPKSAEKP------APVQKPAPSSS-AEKLKEIPAGIQSSKANNYMRAEGQNC 68
Query: 76 GNFITDRPSTKVHAAPGGGSSLGYLFGG 103
GNF+TDRPSTKV AAPGGGSSL YLF G
Sbjct: 69 GNFLTDRPSTKVQAAPGGGSSLDYLFSG 96
>sp|Q9SJW3|SPR1_ARATH Protein SPIRAL1 OS=Arabidopsis thaliana GN=SPR1 PE=2 SV=1
Length = 119
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 69/119 (57%), Gaps = 16/119 (13%)
Query: 1 MGRGVSSGGGQSSLGYLFSDGEAPKPAAKEGQAQNNAPTQKPAP---------------V 45
MGRG S GGGQSSL YLF + PAP
Sbjct: 1 MGRGNSCGGGQSSLDYLFGGDAPAPKPVPAPRPAPTESNNGPAPPVTAVTATALTTATTS 60
Query: 46 AQPVDITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGG 104
+P ++ KQ+PAGI T +NNY RA+GQNTGNF+TDRPSTKVHAAPGGGSSL YLF GG
Sbjct: 61 VEPAELNKQIPAGI-KTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFTGG 118
>sp|Q7Y1L9|SP1L1_ORYSJ Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica
GN=Os03g0417800 PE=2 SV=1
Length = 116
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/56 (83%), Positives = 49/56 (87%), Gaps = 1/56 (1%)
Query: 49 VDITKQLPAGIN-STSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGG 103
D TKQ+PAGI S S NNY RADGQNTGNF+TDRPSTKVHAAPGGGSSLGYLFGG
Sbjct: 60 ADATKQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAPGGGSSLGYLFGG 115
>sp|Q9LF22|SP1L4_ARATH Protein SPIRAL1-like 4 OS=Arabidopsis thaliana GN=SP1L4 PE=2 SV=1
Length = 127
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 72/118 (61%), Gaps = 17/118 (14%)
Query: 3 RGVSSGGGQSSLGYLFSDGEAP----KPAAKEG-------QAQNNAPTQKPAPVAQPV-- 49
RGV+SGGG+SSLGYLF GE+ KP AK G + +P
Sbjct: 5 RGVNSGGGESSLGYLFGSGESVPKPNKPNAKTGFTTTTTTTTTTDGAGGRPKTTTTTTTT 64
Query: 50 ---DITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGGG 104
+ T++ AG+ S NNY R+DGQN GNF+T+RPSTKVHAAPGGGSSLGYLFG G
Sbjct: 65 GDKNKTEENSAGVRG-SPNNYYRSDGQNCGNFLTERPSTKVHAAPGGGSSLGYLFGSG 121
>sp|Q2R0W8|SP1L2_ORYSJ Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica
GN=Os11g0629400 PE=2 SV=1
Length = 115
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/51 (82%), Positives = 45/51 (88%)
Query: 53 KQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGG 103
K++PAGI ST NNY RA GQN GNF+TDRPSTKVHAAPGGGSSLGYLFGG
Sbjct: 64 KEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAPGGGSSLGYLFGG 114
>sp|Q9S7P8|SP1L3_ARATH Protein SPIRAL1-like 3 OS=Arabidopsis thaliana GN=SP1L3 PE=2 SV=1
Length = 122
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 64/110 (58%), Gaps = 10/110 (9%)
Query: 3 RGVSSGGGQSSLGYLFSDGE--APKPAAKEGQAQNNAPTQKPAPVAQPVDI-------TK 53
RGV++G +SSLGYLF G+ + A T +P+ K
Sbjct: 5 RGVNNGVNESSLGYLFGSGQPSSAAAATMGTTTTTTTTTTTDGTGGRPITTTTTTVTDNK 64
Query: 54 QLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFGG 103
+ AG+ S NNY R++GQN GNF+TDRPSTKVHAAPGGGSSL YLFGG
Sbjct: 65 KTSAGVRG-SPNNYFRSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFGG 113
>sp|Q8LGD1|SP1L5_ARATH Protein SPIRAL1-like 5 OS=Arabidopsis thaliana GN=SP1L5 PE=2 SV=1
Length = 99
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 34/40 (85%)
Query: 63 SMNNYMRADGQNTGNFITDRPSTKVHAAPGGGSSLGYLFG 102
S NNY R GQN+GNF+TDRP+TKV + PGGGSSLGYLFG
Sbjct: 58 SNNNYQRVQGQNSGNFVTDRPTTKVKSVPGGGSSLGYLFG 97
>sp|Q7XQ83|SP1L4_ORYSJ Protein SPIRAL1-like 4 OS=Oryza sativa subsp. japonica
GN=Os04g0578300 PE=3 SV=1
Length = 127
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 50/108 (46%), Gaps = 20/108 (18%)
Query: 14 LGYLFS---DGEAPKPAAKEGQAQNNAP--------------TQKPAPVAQPVDITKQLP 56
LGYLF + P + K Q N AP + A P+ P
Sbjct: 17 LGYLFEPEPEDIIPDHSTKSVQGTNKAPKGNIVLGDKMASDEADQEHQAAAPLKKEDSNP 76
Query: 57 AGINSTSMNNYMRAD--GQNTGNFITDRPSTKVHAAPGGGSSLGYLFG 102
++S S +N + G N+G ITDRPST+V APGG SSLG+LFG
Sbjct: 77 I-VSSRSASNIYHTNQVGNNSGLLITDRPSTRVRCAPGGPSSLGFLFG 123
>sp|Q8BY46|ZN574_MOUSE Zinc finger protein 574 OS=Mus musculus GN=Znf574 PE=2 SV=1
Length = 900
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 23 APKPAAKEGQAQNNAPTQKPAPVAQPVDITKQLPAGINSTSMNNYMRADGQNTGNFITDR 82
AP P A E Q TQ P+P V + LPA +S + N +R +G+ G R
Sbjct: 238 APVPEAAEPATQQE--TQVPSPTEAAVSQPEPLPASDHSYELRNELR-NGEAIGRDRRGR 294
Query: 83 PSTKVHAAPGGGSSLGYLF 101
+ ++ GG++ LF
Sbjct: 295 KPRRNNSGESGGAATQELF 313
>sp|Q74ZB0|MEC3_ASHGO DNA damage checkpoint control protein MEC3 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MEC3 PE=3 SV=2
Length = 386
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 34 QNNAPTQKPAPVAQPVDITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKV 87
Q++ P+ PA V + L AG + ++ M + + GN T RPST V
Sbjct: 260 QDDQPSAVPASEPGLVGNVRHLNAGTSMQIEDSEMDIEATDIGNVSTSRPSTSV 313
>sp|A6NI28|RHG42_HUMAN Rho GTPase-activating protein 42 OS=Homo sapiens GN=ARHGAP42 PE=1
SV=3
Length = 874
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 6 SSGGGQSSLGYLFSDGEAP--KPAAK---EGQAQNNAPTQKPAPVAQPVDITKQLPAGI- 59
SS GQ SLG + E+ + A K E Q+ A P V+ P+D+ K+ P G+
Sbjct: 669 SSSNGQKSLGLWTTSPESSSREDATKTDAESDCQSVASVTSPGDVSPPIDLVKKEPYGLS 728
Query: 60 -----NSTSMNNYMRADGQNT 75
+++S+ + A+G +
Sbjct: 729 GLKRASASSLRSISAAEGNKS 749
>sp|Q8NHV4|NEDD1_HUMAN Protein NEDD1 OS=Homo sapiens GN=NEDD1 PE=1 SV=1
Length = 660
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 41 KPAPVAQPVDITKQLPAGINSTSMNNYMRADGQNTGNFITDRPSTKVH 88
KP P+ + + KQ +NSTSM Y+ + G N I D S +VH
Sbjct: 67 KPVPLLELAEGQKQTCVNLNSTSM--YLVSGGLNNTVNIWDLKSKRVH 112
>sp|A8ZYC8|METK_DESOH S-adenosylmethionine synthase OS=Desulfococcus oleovorans (strain
DSM 6200 / Hxd3) GN=metK PE=3 SV=1
Length = 388
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 1 MGRGVSSGGGQSSLGYLFSDGEAPKPAAKEGQAQNNAPTQKPAPVAQPVDITKQLPAGIN 60
+ +GV+ G G LF + A G A + P PAP++ +TKQL A +
Sbjct: 104 IAQGVNEGDG------LFKEQGAGDQGLMFGFACDETPELMPAPISYAHKLTKQL-ADVR 156
Query: 61 STSMNNYMRADGQN 74
+ +++R DG++
Sbjct: 157 KNGVLDFLRPDGKS 170
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.128 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,807,411
Number of Sequences: 539616
Number of extensions: 2093611
Number of successful extensions: 5919
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 5721
Number of HSP's gapped (non-prelim): 181
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)