Query 034005
Match_columns 106
No_of_seqs 94 out of 96
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 14:40:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034005.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034005hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gqba1 a.282.1.1 (A:1-130) Hy 50.8 5.6 0.00041 27.3 3.0 13 14-26 8-20 (130)
2 d1skza1 g.3.15.1 (A:7-58) Fact 37.5 4.9 0.00035 23.6 0.8 17 76-92 13-34 (52)
3 d1wiga1 g.39.1.3 (A:1-32) Acti 16.4 20 0.0015 19.2 0.6 10 73-82 9-18 (32)
4 d1no5a_ d.218.1.5 (A:) Hypothe 14.1 16 0.0012 21.9 -0.2 9 15-23 25-33 (100)
5 d1wota_ d.218.1.5 (A:) Unnamed 10.5 23 0.0016 21.4 -0.4 7 15-21 28-34 (98)
6 d2h9fa1 d.21.1.4 (A:1-182) Hyp 8.9 27 0.002 24.5 -0.5 10 71-80 100-109 (182)
7 d2dloa1 g.39.1.3 (A:8-42) Thyr 8.1 52 0.0038 17.7 0.6 9 74-82 13-21 (35)
8 d2j01p1 c.12.1.1 (P:5-150) Rib 6.0 1.1E+02 0.0077 19.3 1.4 8 17-24 46-53 (146)
9 d1xj1a_ g.3.6.5 (A:) Vhv1.1, p 5.9 75 0.0055 18.0 0.6 19 69-87 23-41 (47)
10 d1v6ga1 g.39.1.3 (A:1-41) Acti 5.6 1.9E+02 0.014 15.6 2.3 25 58-82 1-28 (41)
No 1
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=50.78 E-value=5.6 Score=27.31 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=8.9
Q ss_pred cccccCCCCCCCC
Q 034005 14 LGYLFSDGEAPKP 26 (106)
Q Consensus 14 LGYLFGsge~p~~ 26 (106)
++=+||..++.++
T Consensus 8 ~~kIFG~~~~~~~ 20 (130)
T d2gqba1 8 MSAIFGDSAAASP 20 (130)
T ss_dssp HHHHTCCCSSCTT
T ss_pred HHHHcCCccccCC
Confidence 4457998877654
No 2
>d1skza1 g.3.15.1 (A:7-58) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
Probab=37.47 E-value=4.9 Score=23.63 Aligned_cols=17 Identities=47% Similarity=0.687 Sum_probs=13.2
Q ss_pred cceeccCCC-----cceeeCCC
Q 034005 76 GNFITDRPS-----TKVHAAPG 92 (106)
Q Consensus 76 GNfiTdrps-----trv~a~PG 92 (106)
-|+||||-+ .|||.|-|
T Consensus 13 cniitdrctcsgvrcrvhcphg 34 (52)
T d1skza1 13 CNIITDRCTCSGVRCRVHCPHG 34 (52)
T ss_dssp CCTTTCSSCBCCCSSCCCCTTC
T ss_pred ceeeccceeeccceEEEECCCc
Confidence 489999976 47888765
No 3
>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.36 E-value=20 Score=19.19 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=8.6
Q ss_pred CcccceeccC
Q 034005 73 QNTGNFITDR 82 (106)
Q Consensus 73 QN~GNfiTdr 82 (106)
..|.+|||.|
T Consensus 9 ~~C~~~ItGk 18 (32)
T d1wiga1 9 DSCEKYITGR 18 (32)
T ss_dssp SSSCCCCSSC
T ss_pred hhhhhhhhhh
Confidence 6899999986
No 4
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]}
Probab=14.14 E-value=16 Score=21.87 Aligned_cols=9 Identities=11% Similarity=0.158 Sum_probs=6.9
Q ss_pred ccccCCCCC
Q 034005 15 GYLFSDGEA 23 (106)
Q Consensus 15 GYLFGsge~ 23 (106)
=|||||-..
T Consensus 25 v~LFGS~ar 33 (100)
T d1no5a_ 25 VWAFGSRVK 33 (100)
T ss_dssp EEEEGGGTT
T ss_pred EEEECCCCC
Confidence 499998654
No 5
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=10.51 E-value=23 Score=21.36 Aligned_cols=7 Identities=14% Similarity=0.064 Sum_probs=5.4
Q ss_pred ccccCCC
Q 034005 15 GYLFSDG 21 (106)
Q Consensus 15 GYLFGsg 21 (106)
=|||||-
T Consensus 28 v~lFGS~ 34 (98)
T d1wota_ 28 VRVFGSV 34 (98)
T ss_dssp CEECSHH
T ss_pred EEEECCc
Confidence 4899983
No 6
>d2h9fa1 d.21.1.4 (A:1-182) Hypothetical protein PA0793 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.86 E-value=27 Score=24.55 Aligned_cols=10 Identities=40% Similarity=0.355 Sum_probs=8.1
Q ss_pred CCCcccceec
Q 034005 71 DGQNTGNFIT 80 (106)
Q Consensus 71 ~gQN~GNfiT 80 (106)
..+||||++.
T Consensus 100 ~~~NCGNm~s 109 (182)
T d2h9fa1 100 WSGNCGNLST 109 (182)
T ss_dssp CSCCCHHHHH
T ss_pred ccccccchhh
Confidence 3799999875
No 7
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.10 E-value=52 Score=17.68 Aligned_cols=9 Identities=33% Similarity=0.350 Sum_probs=7.5
Q ss_pred cccceeccC
Q 034005 74 NTGNFITDR 82 (106)
Q Consensus 74 N~GNfiTdr 82 (106)
-||-+||||
T Consensus 13 ~C~~~I~dr 21 (35)
T d2dloa1 13 TCSQPILDR 21 (35)
T ss_dssp TTCCBCCSC
T ss_pred HhchHHHHH
Confidence 578899997
No 8
>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]}
Probab=5.97 E-value=1.1e+02 Score=19.35 Aligned_cols=8 Identities=25% Similarity=0.555 Sum_probs=6.1
Q ss_pred ccCCCCCC
Q 034005 17 LFSDGEAP 24 (106)
Q Consensus 17 LFGsge~p 24 (106)
.|..++.|
T Consensus 46 gFEGGQ~P 53 (146)
T d2j01p1 46 RFEGGRST 53 (146)
T ss_dssp SCCSSSCT
T ss_pred hhccCCCC
Confidence 58888876
No 9
>d1xj1a_ g.3.6.5 (A:) Vhv1.1, polydnaviral gene product {Campoletis sonorensis virus, CsIV [TaxId: 10484]}
Probab=5.93 E-value=75 Score=17.99 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=13.8
Q ss_pred ccCCCcccceeccCCCcce
Q 034005 69 RADGQNTGNFITDRPSTKV 87 (106)
Q Consensus 69 r~~gQN~GNfiTdrpstrv 87 (106)
-++..|.-|||-||----|
T Consensus 23 ~~~S~~~R~FiC~~~G~~~ 41 (47)
T d1xj1a_ 23 YGDSKNVRKFICDRDGEGV 41 (47)
T ss_dssp CSSCCEEEEEEEECSSSSE
T ss_pred ecCCCCcceeeecCCCCEe
Confidence 4566899999999854333
No 10
>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.63 E-value=1.9e+02 Score=15.61 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=0.0
Q ss_pred CcccCCCCcccccCC---CcccceeccC
Q 034005 58 GINSTSMNNYMRADG---QNTGNFITDR 82 (106)
Q Consensus 58 G~~~~~~Nny~r~~g---QN~GNfiTdr 82 (106)
|-.+++.-.|.+--| +.|+.|||..
T Consensus 1 ~~~~~~~~DYq~~fG~~C~~C~~~ItG~ 28 (41)
T d1v6ga1 1 GSSGSSGLDYQRLYGTRCFSCDQFIEGE 28 (41)
T ss_dssp CCCCCCCSCGGGSCCCBCTTTCCBCCSC
T ss_pred CCCCcccccHHHHhCcccccccCEeeee
Done!