Query 034006
Match_columns 106
No_of_seqs 105 out of 213
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 14:41:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_r 60S ribosomal protein L 100.0 6.4E-59 2.2E-63 329.0 6.3 105 2-106 1-105 (105)
2 4a18_C 60S ribosomal protein L 100.0 4.4E-55 1.5E-59 311.1 3.9 99 2-102 1-99 (109)
3 1vq8_3 50S ribosomal protein L 100.0 3.8E-52 1.3E-56 288.8 4.6 91 3-96 1-92 (92)
4 3j21_j 50S ribosomal protein L 100.0 7.5E-52 2.6E-56 288.0 3.7 92 3-96 1-93 (94)
5 3v2d_6 50S ribosomal protein L 94.7 0.011 3.9E-07 36.7 1.4 18 8-27 35-52 (54)
6 3r8s_1 50S ribosomal protein L 94.0 0.017 6E-07 35.3 1.2 16 8-25 32-47 (50)
7 2zjr_1 50S ribosomal protein L 94.0 0.019 6.7E-07 35.7 1.5 18 8-27 36-53 (55)
8 2ftc_P Mitochondrial ribosomal 93.7 0.025 8.5E-07 34.8 1.5 16 8-25 34-49 (52)
9 3bbo_3 Ribosomal protein L33; 93.3 0.019 6.6E-07 37.0 0.5 15 9-25 48-62 (66)
10 2k3r_A Ribonuclease P protein 74.7 3.6 0.00012 28.5 4.0 27 70-96 87-119 (123)
11 2con_A RUH-035 protein, NIN on 65.6 3 0.0001 27.5 1.8 21 8-30 28-48 (79)
12 1nkw_1 50S ribosomal protein L 52.2 13 0.00044 24.8 3.1 16 67-82 33-48 (82)
13 2kvh_A Zinc finger and BTB dom 42.4 11 0.00037 17.0 1.2 11 73-83 4-14 (27)
14 2kvf_A Zinc finger and BTB dom 41.3 11 0.00039 16.9 1.2 11 73-83 4-14 (28)
15 2kvg_A Zinc finger and BTB dom 40.6 12 0.0004 17.1 1.1 11 73-83 4-14 (27)
16 1rik_A E6APC1 peptide; E6-bind 40.4 12 0.00042 16.8 1.2 11 73-83 3-13 (29)
17 2m0f_A Zinc finger and BTB dom 39.2 13 0.00043 16.6 1.1 11 73-83 3-13 (29)
18 3h0g_L DNA-directed RNA polyme 35.8 9.1 0.00031 24.2 0.3 21 73-93 39-61 (63)
19 2lvu_A Zinc finger and BTB dom 41.9 7.8 0.00027 17.4 0.0 12 73-84 3-14 (26)
20 1mm0_A Termicin; termite, cyte 35.6 9.2 0.00031 22.1 0.3 12 8-19 19-30 (36)
21 2m0d_A Zinc finger and BTB dom 35.3 16 0.00053 16.3 1.1 11 73-83 4-14 (30)
22 1x0t_A Ribonuclease P protein 33.9 62 0.0021 21.9 4.4 19 70-88 92-110 (120)
23 2elx_A Zinc finger protein 406 33.6 18 0.0006 17.1 1.2 11 73-83 8-18 (35)
24 2elm_A Zinc finger protein 406 33.0 18 0.00062 17.8 1.2 13 72-84 9-21 (37)
25 1znf_A 31ST zinc finger from X 31.3 12 0.0004 16.7 0.2 11 73-83 2-12 (27)
26 2m0e_A Zinc finger and BTB dom 30.5 11 0.00038 16.8 0.1 11 73-83 3-13 (29)
27 1qyp_A RNA polymerase II; tran 30.4 32 0.0011 20.1 2.2 13 70-82 41-53 (57)
28 1klr_A Zinc finger Y-chromosom 29.9 12 0.0004 16.8 0.1 11 73-83 3-13 (30)
29 2lvt_A Zinc finger and BTB dom 35.7 11 0.00039 17.1 0.0 12 73-84 3-14 (29)
30 1srk_A Zinc finger protein ZFP 29.3 25 0.00085 16.7 1.3 11 73-83 8-18 (35)
31 2elp_A Zinc finger protein 406 28.9 24 0.0008 17.1 1.2 13 72-84 9-21 (37)
32 1ard_A Yeast transcription fac 28.8 13 0.00045 16.6 0.2 11 73-83 3-13 (29)
33 2elq_A Zinc finger protein 406 28.8 26 0.00089 16.8 1.4 12 73-84 10-21 (36)
34 2elt_A Zinc finger protein 406 28.0 25 0.00086 16.7 1.2 12 72-83 9-20 (36)
35 2elv_A Zinc finger protein 406 27.7 27 0.00094 16.7 1.3 12 72-83 9-20 (36)
36 1paa_A Yeast transcription fac 27.3 12 0.00042 16.9 -0.1 11 73-83 3-13 (30)
37 2els_A Zinc finger protein 406 26.5 26 0.00089 16.8 1.1 12 72-83 9-20 (36)
38 2lvr_A Zinc finger and BTB dom 32.2 14 0.00048 16.7 0.0 12 73-84 4-15 (30)
39 2elo_A Zinc finger protein 406 25.5 20 0.00069 17.2 0.6 11 73-83 10-20 (37)
40 3o9x_A Uncharacterized HTH-typ 25.1 37 0.0013 22.0 2.0 26 73-98 3-28 (133)
41 2epv_A Zinc finger protein 268 25.0 29 0.001 17.6 1.2 11 73-83 13-23 (44)
42 1njq_A Superman protein; zinc- 24.9 29 0.00098 17.1 1.1 11 73-83 7-17 (39)
43 2epc_A Zinc finger protein 32; 24.2 31 0.0011 17.0 1.2 12 73-84 12-23 (42)
44 1rim_A E6APC2 peptide; E6-bind 24.1 17 0.00058 17.6 0.1 11 73-83 3-13 (33)
45 1fv5_A First zinc finger of U- 23.6 23 0.00078 19.0 0.6 12 73-84 9-20 (36)
46 1p7a_A BF3, BKLF, kruppel-like 22.9 19 0.00064 17.4 0.1 11 73-83 12-22 (37)
47 2kfq_A FP1; protein, de novo p 22.4 14 0.00047 17.7 -0.5 11 73-83 3-13 (32)
48 3j21_g 50S ribosomal protein L 21.1 28 0.00097 21.0 0.7 20 74-97 30-49 (51)
49 2en2_A B-cell lymphoma 6 prote 20.9 38 0.0013 16.7 1.1 11 73-83 12-22 (42)
50 2elr_A Zinc finger protein 406 20.9 23 0.00077 16.9 0.2 11 73-83 10-20 (36)
51 2yu5_A Zinc finger protein 473 20.6 41 0.0014 16.9 1.2 12 73-84 13-24 (44)
52 1k81_A EIF-2-beta, probable tr 20.2 70 0.0024 17.5 2.2 15 70-84 19-33 (36)
53 2el5_A Zinc finger protein 268 20.2 42 0.0014 16.5 1.2 12 73-84 11-22 (42)
54 2emb_A Zinc finger protein 473 20.2 40 0.0014 16.9 1.1 12 73-84 13-24 (44)
55 1tfi_A Transcriptional elongat 20.0 65 0.0022 18.9 2.1 14 69-82 34-47 (50)
No 1
>3iz5_r 60S ribosomal protein L42 (L44E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_r 2zkr_4 3izc_r 3izs_r 3o58_f 3o5h_f 3u5e_o 3u5i_o 4b6a_o 1s1i_Z 3j0o_F 3j0l_F 3jyw_Z
Probab=100.00 E-value=6.4e-59 Score=328.98 Aligned_cols=105 Identities=94% Similarity=1.445 Sum_probs=104.1
Q ss_pred ccccCceeeeeccCCCCCCccceEEEEeecCccchhhccceeeeccccCCCCcccceecCCCCccceeEEEEEecCCCce
Q 034006 2 DVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHV 81 (106)
Q Consensus 2 mv~vPK~~~tyC~~~~C~kHt~HkVtqyKkGK~s~~aqG~Rrydrkq~GygGq~kpi~~k~aKtTKKi~Lrl~C~~C~~~ 81 (106)
|||||++++|||++|+|++||+|+|+||++|++|++|||+|||||+|+|||||++|||+++|||||||||+|+|++|+++
T Consensus 1 mvnvPK~~~tyC~~p~C~kHt~HkVtqyKkGK~s~~aqGkRrydRkq~GyGGq~kpi~~kkaK~TKKi~Lrl~C~~C~~~ 80 (105)
T 3iz5_r 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLKLQCQSCKHY 80 (105)
T ss_dssp CCCCCSEEEECCCSTTTCSCEEEEEEECCCCCCSSTTHHHHHHHHTTTTCCCTTCCSCSCCCCCCEECCEEEEETTTSCC
T ss_pred CCCCCceeeeccCCCCCCCCccEEEEEeecccccchhhchhhHHhhcCccCCccCCcccCCCcccceEEEEEEecccCcc
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecceeeeeeEEeeeeccCCccCC
Q 034006 82 SQHPIKRCKHFEIGGDKKGKGTSLF 106 (106)
Q Consensus 82 ~~~~~kR~KkfEl~~~kk~kg~~~~ 106 (106)
+|++++||+|||||||+|++|++||
T Consensus 81 ~~~~~kR~K~fElg~~kk~~~~~~~ 105 (105)
T 3iz5_r 81 SQHPIKRCKHFEIGGDKKGKGTSLF 105 (105)
T ss_dssp BCCCCCEESSCCCSSCCCCCCCCCC
T ss_pred cccccceeeEEEEcccccccCcccC
Confidence 9999999999999999999999998
No 2
>4a18_C 60S ribosomal protein L36A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_C 4a1b_C 4a1d_C
Probab=100.00 E-value=4.4e-55 Score=311.09 Aligned_cols=99 Identities=60% Similarity=0.943 Sum_probs=96.4
Q ss_pred ccccCceeeeeccCCCCCCccceEEEEeecCccchhhccceeeeccccCCCCcccceecCCCCccceeEEEEEecCCCce
Q 034006 2 DVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHV 81 (106)
Q Consensus 2 mv~vPK~~~tyC~~~~C~kHt~HkVtqyKkGK~s~~aqG~Rrydrkq~GygGq~kpi~~k~aKtTKKi~Lrl~C~~C~~~ 81 (106)
|||||++++||| |+|++||+|+||||++|++|++|||+|||||+|+||||||+|||+++|||||||||+|+|++|+++
T Consensus 1 mv~vPK~~~tyC--pkC~kHt~HkVtqyKkGK~s~~aqGkRrydRkq~GyGGq~kpi~~~kaKtTKKivLrl~C~eC~~~ 78 (109)
T 4a18_C 1 MVQVPKTRKTYC--KKCNSHTNHKVSQYKKSKESTHAQGRRRYDMKQSGFGGQTKPIFRKKAKTTKKVALKFDCTTCKTK 78 (109)
T ss_dssp -CEEESEEEEEE--TTTTEEEEEEEEECCCCCCCTTSHHHHHHHHHHSSSSSCCSCCCCCCCCSCCCCEEEEEETTTCCE
T ss_pred CCCCCcceeecC--cCCCCCcceEEEEeecccccchhhchhhhhhhcCCcCCccCCcccCCCcccceEEEEEEecccCcc
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecceeeeeeEEeeeeccCC
Q 034006 82 SQHPIKRCKHFEIGGDKKGKG 102 (106)
Q Consensus 82 ~~~~~kR~KkfEl~~~kk~kg 102 (106)
+|++++||++|||++|+|++.
T Consensus 79 ~~~~~kR~K~fEl~~~kk~~~ 99 (109)
T 4a18_C 79 RVIPIKRCKTIVFMDITQIKK 99 (109)
T ss_dssp EEEECCCCSCCEEECHHHHHH
T ss_pred cccccceeeeEEEccccchhh
Confidence 999999999999999998763
No 3
>1vq8_3 50S ribosomal protein L44E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.3 PDB: 1jj2_2 1k73_4* 1k8a_4* 1k9m_4* 1kc8_4* 1kd1_4* 1kqs_2* 1m1k_4* 1m90_4* 1n8r_4* 1nji_4* 1q7y_4* 1q81_4* 1q82_4* 1q86_4* 1qvf_2 1qvg_2 1s72_3* 1vq4_3* 1vq5_3* ...
Probab=100.00 E-value=3.8e-52 Score=288.76 Aligned_cols=91 Identities=25% Similarity=0.428 Sum_probs=89.4
Q ss_pred cccCceeeeeccCCCCCCccceEEEEeecCccchhhccceeeec-cccCCCCcccceecCCCCccceeEEEEEecCCCce
Q 034006 3 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDR-KQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHV 81 (106)
Q Consensus 3 v~vPK~~~tyC~~~~C~kHt~HkVtqyKkGK~s~~aqG~Rrydr-kq~GygGq~kpi~~k~aKtTKKi~Lrl~C~~C~~~ 81 (106)
||||++++||| |+|++||+|+|||||+|++|++|||+||||| +|+||||||+|||++ |||||||||+|+|++|+++
T Consensus 1 m~~PK~~~tyC--p~C~kHt~HkVtqyKkGK~s~~aqG~Rry~r~kq~GygGq~kpv~~~-aK~TKKi~Lrl~C~~C~~~ 77 (92)
T 1vq8_3 1 MQMPRRFNTYC--PHCNEHQEHEVEKVRSGRQTGMKWIDRQRERNSGIGNDGKFSKVPGG-DKPTKKTDLKYRCGECGKA 77 (92)
T ss_dssp CEEESEEEEEE--TTTTEEEEEEEEECCCCCCCSCSHHHHHHHHHCCSSCCGGGGCCCCC-CCSSCBCCEEEEETTTCCE
T ss_pred CCCCccccccC--CCCCCCccEEEEEEecCCcChhhhcchhhhhccccccCCcCCcccCC-CcccceEEEEEEecccChh
Confidence 89999999999 9999999999999999999999999999999 999999999999987 9999999999999999999
Q ss_pred eeecceeeeeeEEee
Q 034006 82 SQHPIKRCKHFEIGG 96 (106)
Q Consensus 82 ~~~~~kR~KkfEl~~ 96 (106)
+|++++||++|||+.
T Consensus 78 ~~~~~~R~k~fEl~e 92 (92)
T 1vq8_3 78 HLREGWRAGRLEFQE 92 (92)
T ss_dssp ECCCCCBCSCCEEEC
T ss_pred hccccceeeEEEecC
Confidence 999999999999974
No 4
>3j21_j 50S ribosomal protein L44E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=7.5e-52 Score=287.96 Aligned_cols=92 Identities=38% Similarity=0.663 Sum_probs=91.0
Q ss_pred cccCceeeeeccCCCCCCccceEEEEeecCccchhhccceeeeccccCCCCcccceecCCCCccceeEEEEEecCCCcee
Q 034006 3 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVS 82 (106)
Q Consensus 3 v~vPK~~~tyC~~~~C~kHt~HkVtqyKkGK~s~~aqG~Rrydrkq~GygGq~kpi~~k~aKtTKKi~Lrl~C~~C~~~~ 82 (106)
|||||+++||| |+|++||+|+|+||++|+||++|||+|||||+|+||||||+|||+++|||||||||+|+|++|++++
T Consensus 1 M~vPK~~~tyC--~~C~kHt~HkVt~yKkgK~s~~aqG~Rry~rkq~GygGq~kpv~~~~aK~TKKi~Lrl~C~eC~~~~ 78 (94)
T 3j21_j 1 MKYPKQIRTYC--PFCKKHTIHKVERVKKRPRSELSAGQRRFRRILKGYGGFPRPKPEGREKPVKKLDLRFRCTECGKAH 78 (94)
T ss_dssp CEECSEEEECC--TTTTSCEEEEECCCCCCCCSSCSHHHHTTTTCCSSCCSTTSCCSCCCCCSSCBCCCCEEESSSCCEE
T ss_pred CCCCceeeecC--cCCCCCcceEEEEEecccccchhhcchhhhhhccccCCccccccccCccccceEEEEEEecccCccc
Confidence 89999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eec-ceeeeeeEEee
Q 034006 83 QHP-IKRCKHFEIGG 96 (106)
Q Consensus 83 ~~~-~kR~KkfEl~~ 96 (106)
|++ ++||++|||+.
T Consensus 79 ~~~~~~R~k~fEl~e 93 (94)
T 3j21_j 79 TRGRGFRVKKFELVE 93 (94)
T ss_dssp CCCCCCBCSCCEECC
T ss_pred eeccCceeeeEEEec
Confidence 999 99999999985
No 5
>3v2d_6 50S ribosomal protein L33; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ...
Probab=94.67 E-value=0.011 Score=36.75 Aligned_cols=18 Identities=44% Similarity=0.953 Sum_probs=15.3
Q ss_pred eeeeeccCCCCCCccceEEE
Q 034006 8 TKKTYCKSKECRKHTLHKVT 27 (106)
Q Consensus 8 ~~~tyC~~~~C~kHt~HkVt 27 (106)
+.+-|| |.|++||.|+=+
T Consensus 35 elkKyc--p~c~kHtlhkE~ 52 (54)
T 3v2d_6 35 ELRKYC--PWCRKHTVHREV 52 (54)
T ss_dssp EEEEEE--TTTTEEEEEEEE
T ss_pred EEeeeC--CCCCCEeeEEEe
Confidence 467899 999999999843
No 6
>3r8s_1 50S ribosomal protein L33; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_1 3j19_1 2wwq_4 3oat_1* 3oas_1* 3ofd_1 3ofc_1 3ofr_1* 3ofz_1* 3og0_1 3ofq_1 3r8t_1 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 ...
Probab=94.04 E-value=0.017 Score=35.33 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=14.3
Q ss_pred eeeeeccCCCCCCccceE
Q 034006 8 TKKTYCKSKECRKHTLHK 25 (106)
Q Consensus 8 ~~~tyC~~~~C~kHt~Hk 25 (106)
+.+-|| |.|++||.|+
T Consensus 32 elkKyc--p~~~khtlhk 47 (50)
T 3r8s_1 32 ELKKFD--PVVRQHVIYK 47 (50)
T ss_dssp CEEEEE--TTTTEEEEEE
T ss_pred eEeeeC--cCCCCEeeEE
Confidence 467899 9999999997
No 7
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3
Probab=94.03 E-value=0.019 Score=35.70 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=15.1
Q ss_pred eeeeeccCCCCCCccceEEE
Q 034006 8 TKKTYCKSKECRKHTLHKVT 27 (106)
Q Consensus 8 ~~~tyC~~~~C~kHt~HkVt 27 (106)
+.+-|| |.|++||.|+=+
T Consensus 36 elkKyc--p~~~kHtlhkE~ 53 (55)
T 2zjr_1 36 ELKKYD--PVAKKHVVFREK 53 (55)
T ss_pred EEEccC--CCCCCEEeEEEe
Confidence 467899 999999999743
No 8
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P
Probab=93.71 E-value=0.025 Score=34.75 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=14.2
Q ss_pred eeeeeccCCCCCCccceE
Q 034006 8 TKKTYCKSKECRKHTLHK 25 (106)
Q Consensus 8 ~~~tyC~~~~C~kHt~Hk 25 (106)
+.+-|| |.|++||.|+
T Consensus 34 elkKyc--p~~~khtlhk 49 (52)
T 2ftc_P 34 TLLHYD--PVVKQRVLFV 49 (52)
T ss_pred EEEccC--CCCCceEeEE
Confidence 457899 9999999997
No 9
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=93.27 E-value=0.019 Score=37.04 Aligned_cols=15 Identities=40% Similarity=0.957 Sum_probs=13.5
Q ss_pred eeeeccCCCCCCccceE
Q 034006 9 KKTYCKSKECRKHTLHK 25 (106)
Q Consensus 9 ~~tyC~~~~C~kHt~Hk 25 (106)
.+-|| |.|++||+|+
T Consensus 48 lkKyc--p~c~kHtlhk 62 (66)
T 3bbo_3 48 LRKFC--PYCYKHTIHG 62 (66)
T ss_dssp CCCCC--CSSSSCCCCC
T ss_pred EEccC--CCCCCeeeEE
Confidence 56799 9999999996
No 10
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=74.69 E-value=3.6 Score=28.52 Aligned_cols=27 Identities=30% Similarity=0.736 Sum_probs=14.0
Q ss_pred EEEEEecCCCceeeecc------eeeeeeEEee
Q 034006 70 VLRLQCQGCKHVSQHPI------KRCKHFEIGG 96 (106)
Q Consensus 70 ~Lrl~C~~C~~~~~~~~------kR~KkfEl~~ 96 (106)
.|.++|..||...-.+. .|-.+.|.||
T Consensus 87 ~vv~tCl~Cg~~kR~p~~~~~~~~r~~~~~~~~ 119 (123)
T 2k3r_A 87 HIVVKCLECGHIMRYPYIKEIKKRRKEKMEYGG 119 (123)
T ss_dssp EEEEEETTTTEEEEEECCC--------------
T ss_pred EEEEECCCCCCEEEEecCccHHHHHHHhhhccC
Confidence 58999999998876555 4555566655
No 11
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=65.59 E-value=3 Score=27.50 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=17.7
Q ss_pred eeeeeccCCCCCCccceEEEEee
Q 034006 8 TKKTYCKSKECRKHTLHKVTQYK 30 (106)
Q Consensus 8 ~~~tyC~~~~C~kHt~HkVtqyK 30 (106)
.-+-|| |+|+..|..+|+-+=
T Consensus 28 ~~k~FC--p~CGn~TL~Rvsvsv 48 (79)
T 2con_A 28 MNRVFC--GHCGNKTLKKVSVTI 48 (79)
T ss_dssp SSCCSC--SSSCCSCCEEEECBC
T ss_pred cccccc--cccCcccceEEEEEE
Confidence 346899 999999999998753
No 12
>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_1* 1yl3_6 2b66_6 2b9n_6 2b9p_6
Probab=52.22 E-value=13 Score=24.76 Aligned_cols=16 Identities=6% Similarity=0.291 Sum_probs=13.1
Q ss_pred ceeEEEEEecCCCcee
Q 034006 67 KKIVLRLQCQGCKHVS 82 (106)
Q Consensus 67 KKi~Lrl~C~~C~~~~ 82 (106)
.++.+.|+|++|+...
T Consensus 33 ~R~~I~L~Ct~ct~~n 48 (82)
T 1nkw_1 33 PRIIVKMESSAGTGFY 48 (82)
T ss_pred CceEEEEEEecCCCee
Confidence 5778899999998753
No 13
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=42.41 E-value=11 Score=17.00 Aligned_cols=11 Identities=27% Similarity=0.706 Sum_probs=9.1
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
++|..|++...
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 78999998754
No 14
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=41.33 E-value=11 Score=16.93 Aligned_cols=11 Identities=18% Similarity=0.455 Sum_probs=9.1
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
++|..|++...
T Consensus 4 ~~C~~C~k~f~ 14 (28)
T 2kvf_A 4 YSCSVCGKRFS 14 (28)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCcccC
Confidence 78999998754
No 15
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=40.59 E-value=12 Score=17.13 Aligned_cols=11 Identities=18% Similarity=0.558 Sum_probs=9.1
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
++|..|++...
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvg_A 4 YRCPLCRAGCP 14 (27)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 78999998754
No 16
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=40.38 E-value=12 Score=16.82 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=9.1
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
++|..|++...
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 1rik_A 3 FACPECPKRFM 13 (29)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 78999998754
No 17
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=39.16 E-value=13 Score=16.61 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=9.0
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
++|.+|++...
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 78999998754
No 18
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=35.85 E-value=9.1 Score=24.18 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=12.8
Q ss_pred EEecCCCceeeec--ceeeeeeE
Q 034006 73 LQCQGCKHVSQHP--IKRCKHFE 93 (106)
Q Consensus 73 l~C~~C~~~~~~~--~kR~KkfE 93 (106)
++|.+||+..+.. ..|...||
T Consensus 39 iRC~~CG~RILyK~Rt~r~~~~~ 61 (63)
T 3h0g_L 39 IRCRECGHRVMYKMRTKRMVQFE 61 (63)
T ss_dssp CCCSSSCCCCCBCCCCCCCEEEC
T ss_pred eECCCCCcEEEEEecCCceEEEE
Confidence 6788888877632 24444443
No 19
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=41.87 E-value=7.8 Score=17.39 Aligned_cols=12 Identities=17% Similarity=0.462 Sum_probs=9.4
Q ss_pred EEecCCCceeee
Q 034006 73 LQCQGCKHVSQH 84 (106)
Q Consensus 73 l~C~~C~~~~~~ 84 (106)
++|.+|++....
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 789999987553
No 20
>1mm0_A Termicin; termite, cytein-rich, antimicrobial peptide, insect defensin, CSAB motif, antimicrobial protein; NMR {Pseudacanthotermes spiniger} SCOP: g.3.7.4
Probab=35.59 E-value=9.2 Score=22.08 Aligned_cols=12 Identities=17% Similarity=1.018 Sum_probs=9.7
Q ss_pred eeeeeccCCCCC
Q 034006 8 TKKTYCKSKECR 19 (106)
Q Consensus 8 ~~~tyC~~~~C~ 19 (106)
.+++||+|+.|.
T Consensus 19 FRRAyCdgs~C~ 30 (36)
T 1mm0_A 19 FRRAFCDRSQCK 30 (36)
T ss_dssp EEEEEEETTEEE
T ss_pred eeeeeecCCeeE
Confidence 478999998874
No 21
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=35.32 E-value=16 Score=16.34 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=9.1
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
+.|..|++...
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 78999998754
No 22
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=33.86 E-value=62 Score=21.93 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=14.7
Q ss_pred EEEEEecCCCceeeeccee
Q 034006 70 VLRLQCQGCKHVSQHPIKR 88 (106)
Q Consensus 70 ~Lrl~C~~C~~~~~~~~kR 88 (106)
.|.++|..||...-.+..+
T Consensus 92 ~vv~tCl~Cg~~kR~p~~~ 110 (120)
T 1x0t_A 92 HVVITCLECGYIMRYPYLR 110 (120)
T ss_dssp EEEEEETTTCCEEEEECC-
T ss_pred EEEEECCCCCCEEEEccCc
Confidence 5899999999887666543
No 23
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.55 E-value=18 Score=17.10 Aligned_cols=11 Identities=18% Similarity=0.286 Sum_probs=9.3
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
|+|..|++...
T Consensus 8 ~~C~~C~k~f~ 18 (35)
T 2elx_A 8 YVCALCLKKFV 18 (35)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCcchhC
Confidence 89999998754
No 24
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.95 E-value=18 Score=17.80 Aligned_cols=13 Identities=23% Similarity=0.403 Sum_probs=10.3
Q ss_pred EEEecCCCceeee
Q 034006 72 RLQCQGCKHVSQH 84 (106)
Q Consensus 72 rl~C~~C~~~~~~ 84 (106)
.|+|.+|++....
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elm_A 9 LYYCSQCHYSSIT 21 (37)
T ss_dssp EEECSSSSCEEEC
T ss_pred CeECCCCCcccCC
Confidence 3899999998653
No 25
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=31.31 E-value=12 Score=16.67 Aligned_cols=11 Identities=18% Similarity=0.474 Sum_probs=8.6
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
++|..|++...
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 67999998754
No 26
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=30.53 E-value=11 Score=16.76 Aligned_cols=11 Identities=18% Similarity=0.555 Sum_probs=8.7
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
++|.+|++...
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 67999998754
No 27
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=30.44 E-value=32 Score=20.11 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=11.1
Q ss_pred EEEEEecCCCcee
Q 034006 70 VLRLQCQGCKHVS 82 (106)
Q Consensus 70 ~Lrl~C~~C~~~~ 82 (106)
.|-|.|..|+..+
T Consensus 41 T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 41 TIFYKCTKCGHTW 53 (57)
T ss_dssp EEEEEESSSCCEE
T ss_pred cEEEEcCCCCCEe
Confidence 5889999999864
No 28
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=29.85 E-value=12 Score=16.80 Aligned_cols=11 Identities=45% Similarity=0.773 Sum_probs=8.8
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
++|..|++...
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1klr_A 3 YQCQYCEFRSA 13 (30)
T ss_dssp CCCSSSSCCCS
T ss_pred ccCCCCCCccC
Confidence 67999998754
No 29
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=35.70 E-value=11 Score=17.11 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=9.4
Q ss_pred EEecCCCceeee
Q 034006 73 LQCQGCKHVSQH 84 (106)
Q Consensus 73 l~C~~C~~~~~~ 84 (106)
|+|..|++....
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2lvt_A 3 CQCVMCGKAFTQ 14 (29)
Confidence 789999987553
No 30
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=29.31 E-value=25 Score=16.66 Aligned_cols=11 Identities=18% Similarity=0.471 Sum_probs=9.3
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
++|..|++...
T Consensus 8 ~~C~~C~k~f~ 18 (35)
T 1srk_A 8 FVCRICLSAFT 18 (35)
T ss_dssp EECSSSCCEES
T ss_pred eeCCCCCcccC
Confidence 89999998754
No 31
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.93 E-value=24 Score=17.06 Aligned_cols=13 Identities=15% Similarity=0.478 Sum_probs=10.2
Q ss_pred EEEecCCCceeee
Q 034006 72 RLQCQGCKHVSQH 84 (106)
Q Consensus 72 rl~C~~C~~~~~~ 84 (106)
.++|..|++....
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elp_A 9 AMKCPYCDFYFMK 21 (37)
T ss_dssp CEECSSSSCEECS
T ss_pred CeECCCCChhhcc
Confidence 3899999987654
No 32
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=28.81 E-value=13 Score=16.64 Aligned_cols=11 Identities=18% Similarity=0.597 Sum_probs=8.7
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
+.|..|++...
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 68999998754
No 33
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.77 E-value=26 Score=16.78 Aligned_cols=12 Identities=17% Similarity=0.672 Sum_probs=9.7
Q ss_pred EEecCCCceeee
Q 034006 73 LQCQGCKHVSQH 84 (106)
Q Consensus 73 l~C~~C~~~~~~ 84 (106)
++|..|++....
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2elq_A 10 FKCSLCEYATRS 21 (36)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 899999987653
No 34
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.98 E-value=25 Score=16.68 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=9.6
Q ss_pred EEEecCCCceee
Q 034006 72 RLQCQGCKHVSQ 83 (106)
Q Consensus 72 rl~C~~C~~~~~ 83 (106)
.++|..|++...
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elt_A 9 PYKCPQCSYASA 20 (36)
T ss_dssp SEECSSSSCEES
T ss_pred CCCCCCCCcccC
Confidence 389999998754
No 35
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.73 E-value=27 Score=16.68 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=9.6
Q ss_pred EEEecCCCceee
Q 034006 72 RLQCQGCKHVSQ 83 (106)
Q Consensus 72 rl~C~~C~~~~~ 83 (106)
.|+|..|++...
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elv_A 9 LYDCHICERKFK 20 (36)
T ss_dssp CEECSSSCCEES
T ss_pred CeECCCCCCccC
Confidence 389999998754
No 36
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=27.34 E-value=12 Score=16.94 Aligned_cols=11 Identities=18% Similarity=0.489 Sum_probs=8.7
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
++|..|++...
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1paa_A 3 YACGLCNRAFT 13 (30)
T ss_dssp SBCTTTCCBCS
T ss_pred cCCcccCcccC
Confidence 57999998754
No 37
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.48 E-value=26 Score=16.76 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=9.6
Q ss_pred EEEecCCCceee
Q 034006 72 RLQCQGCKHVSQ 83 (106)
Q Consensus 72 rl~C~~C~~~~~ 83 (106)
.++|..|++...
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2els_A 9 IFTCEYCNKVFK 20 (36)
T ss_dssp CEECTTTCCEES
T ss_pred CEECCCCCceeC
Confidence 389999998754
No 38
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=32.21 E-value=14 Score=16.67 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=9.5
Q ss_pred EEecCCCceeee
Q 034006 73 LQCQGCKHVSQH 84 (106)
Q Consensus 73 l~C~~C~~~~~~ 84 (106)
++|..|++....
T Consensus 4 ~~C~~C~k~f~~ 15 (30)
T 2lvr_A 4 YVCIHCQRQFAD 15 (30)
Confidence 789999987553
No 39
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.54 E-value=20 Score=17.24 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=9.2
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
++|..|++...
T Consensus 10 ~~C~~C~k~f~ 20 (37)
T 2elo_A 10 YSCPVCEKSFS 20 (37)
T ss_dssp CEETTTTEECS
T ss_pred cCCCCCCCccC
Confidence 78999998754
No 40
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=25.11 E-value=37 Score=21.98 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=20.2
Q ss_pred EEecCCCceeeecceeeeeeEEeeee
Q 034006 73 LQCQGCKHVSQHPIKRCKHFEIGGDK 98 (106)
Q Consensus 73 l~C~~C~~~~~~~~kR~KkfEl~~~k 98 (106)
..|..|+...+....+.-.|++.|..
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~ 28 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRK 28 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEE
T ss_pred cCCCcCCCCceeeceEEEEEEECCEE
Confidence 36999999887777888788877654
No 41
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.01 E-value=29 Score=17.60 Aligned_cols=11 Identities=18% Similarity=0.591 Sum_probs=9.4
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
|+|..|++...
T Consensus 13 ~~C~~C~k~F~ 23 (44)
T 2epv_A 13 YECNECGKAFI 23 (44)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCcccC
Confidence 89999998754
No 42
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=24.91 E-value=29 Score=17.07 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=9.2
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
++|..|++...
T Consensus 7 ~~C~~C~k~f~ 17 (39)
T 1njq_A 7 YTCSFCKREFR 17 (39)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCCcccC
Confidence 78999998754
No 43
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=24.25 E-value=31 Score=17.01 Aligned_cols=12 Identities=17% Similarity=0.454 Sum_probs=9.8
Q ss_pred EEecCCCceeee
Q 034006 73 LQCQGCKHVSQH 84 (106)
Q Consensus 73 l~C~~C~~~~~~ 84 (106)
++|..|++....
T Consensus 12 ~~C~~C~k~f~~ 23 (42)
T 2epc_A 12 YLCGQCGKSFTQ 23 (42)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCcccCC
Confidence 899999987653
No 44
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=24.14 E-value=17 Score=17.58 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=8.8
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
++|..|++...
T Consensus 3 ~~C~~C~k~F~ 13 (33)
T 1rim_A 3 FACPECPKRFM 13 (33)
T ss_dssp CCCSSSCCCCS
T ss_pred ccCCCCCchhC
Confidence 67999998754
No 45
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=23.55 E-value=23 Score=18.97 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=9.8
Q ss_pred EEecCCCceeee
Q 034006 73 LQCQGCKHVSQH 84 (106)
Q Consensus 73 l~C~~C~~~~~~ 84 (106)
++|.+|++....
T Consensus 9 ~~C~~CgK~F~~ 20 (36)
T 1fv5_A 9 FMCLPCGIAFSS 20 (36)
T ss_dssp CEETTTTEECSC
T ss_pred eECCCCCCccCC
Confidence 789999998653
No 46
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=22.91 E-value=19 Score=17.39 Aligned_cols=11 Identities=27% Similarity=0.761 Sum_probs=9.1
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
++|..|++...
T Consensus 12 ~~C~~C~k~f~ 22 (37)
T 1p7a_A 12 FQCPDCDRSFS 22 (37)
T ss_dssp BCCTTTCCCBS
T ss_pred ccCCCCCcccC
Confidence 78999998754
No 47
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=22.44 E-value=14 Score=17.75 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=8.5
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
++|.+|++...
T Consensus 3 ~~C~~C~k~f~ 13 (32)
T 2kfq_A 3 FACPACPKRFM 13 (32)
T ss_dssp SSSSSSCTTHH
T ss_pred CCCCCCCcccC
Confidence 57999998644
No 48
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.12 E-value=28 Score=20.98 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=10.3
Q ss_pred EecCCCceeeecceeeeeeEEeee
Q 034006 74 QCQGCKHVSQHPIKRCKHFEIGGD 97 (106)
Q Consensus 74 ~C~~C~~~~~~~~kR~KkfEl~~~ 97 (106)
.|..||+. ..|.|+-|+.+.
T Consensus 30 ~CrKCG~~----~lr~k~k~~~~~ 49 (51)
T 3j21_g 30 KCRKCGYK----RLRPKAKEPRGG 49 (51)
T ss_dssp SCSSSSSC----CCEEECCCCC--
T ss_pred ecCCCCCc----cccccccccccc
Confidence 46667766 345555565543
No 49
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.88 E-value=38 Score=16.72 Aligned_cols=11 Identities=18% Similarity=0.513 Sum_probs=9.3
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
++|..|++...
T Consensus 12 ~~C~~C~k~f~ 22 (42)
T 2en2_A 12 YKCETCGARFV 22 (42)
T ss_dssp EECTTTCCEES
T ss_pred EeCCCcChhhC
Confidence 89999998754
No 50
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.86 E-value=23 Score=16.87 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=9.0
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
+.|..|++...
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elr_A 10 HLCDMCGKKFK 20 (36)
T ss_dssp CBCTTTCCBCS
T ss_pred eecCcCCCCcC
Confidence 78999998754
No 51
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.62 E-value=41 Score=16.85 Aligned_cols=12 Identities=25% Similarity=0.791 Sum_probs=9.9
Q ss_pred EEecCCCceeee
Q 034006 73 LQCQGCKHVSQH 84 (106)
Q Consensus 73 l~C~~C~~~~~~ 84 (106)
++|..|++....
T Consensus 13 ~~C~~C~k~f~~ 24 (44)
T 2yu5_A 13 FKCSKCDRVFTQ 24 (44)
T ss_dssp EECSSSSCEESS
T ss_pred eECCCCCchhCC
Confidence 899999987653
No 52
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=20.24 E-value=70 Score=17.55 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=12.3
Q ss_pred EEEEEecCCCceeee
Q 034006 70 VLRLQCQGCKHVSQH 84 (106)
Q Consensus 70 ~Lrl~C~~C~~~~~~ 84 (106)
.+-|+|..||.....
T Consensus 19 ~~~l~C~aCG~~~~v 33 (36)
T 1k81_A 19 VHLLKCMACGAIRPI 33 (36)
T ss_dssp EEEEEEETTTEEEEE
T ss_pred cEEEEhhcCCCcccc
Confidence 577899999988764
No 53
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=20.19 E-value=42 Score=16.55 Aligned_cols=12 Identities=17% Similarity=0.617 Sum_probs=9.7
Q ss_pred EEecCCCceeee
Q 034006 73 LQCQGCKHVSQH 84 (106)
Q Consensus 73 l~C~~C~~~~~~ 84 (106)
++|..|++....
T Consensus 11 ~~C~~C~k~f~~ 22 (42)
T 2el5_A 11 YECSECGKAFNR 22 (42)
T ss_dssp EECSSSCCEESS
T ss_pred ccCCCcChhhCC
Confidence 899999987543
No 54
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.16 E-value=40 Score=16.88 Aligned_cols=12 Identities=17% Similarity=0.570 Sum_probs=9.8
Q ss_pred EEecCCCceeee
Q 034006 73 LQCQGCKHVSQH 84 (106)
Q Consensus 73 l~C~~C~~~~~~ 84 (106)
++|..|++....
T Consensus 13 ~~C~~C~k~f~~ 24 (44)
T 2emb_A 13 YECSKCQATFNL 24 (44)
T ss_dssp EECTTTCCEESC
T ss_pred eECCCCCCccCC
Confidence 899999987653
No 55
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=20.02 E-value=65 Score=18.85 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=11.6
Q ss_pred eEEEEEecCCCcee
Q 034006 69 IVLRLQCQGCKHVS 82 (106)
Q Consensus 69 i~Lrl~C~~C~~~~ 82 (106)
..|-|.|.+|+..+
T Consensus 34 mT~Fy~C~~Cg~~w 47 (50)
T 1tfi_A 34 MTTFVVCNECGNRW 47 (50)
T ss_dssp CEEEEEESSSCCEE
T ss_pred ceEEEEcCCCCCeE
Confidence 47889999999864
Done!