Query 034006
Match_columns 106
No_of_seqs 105 out of 213
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 14:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034006.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034006hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vqo31 g.41.8.3 (3:1-92) Ribo 100.0 1.1E-48 7.7E-53 269.6 4.8 92 3-96 1-92 (92)
2 d2j0161 g.41.8.6 (6:9-53) Ribo 95.1 0.0022 1.6E-07 37.5 0.5 16 8-25 27-42 (45)
3 d2gyc11 g.41.8.6 (1:1-52) Ribo 90.9 0.028 2.1E-06 33.4 0.7 16 8-25 34-49 (52)
4 d2zjr11 g.41.8.6 (1:2-54) Ribo 89.3 0.065 4.7E-06 31.9 1.3 17 8-26 35-51 (53)
5 d2cona1 g.41.15.1 (A:8-73) RNA 79.7 0.41 3E-05 29.2 1.8 21 8-30 21-41 (66)
6 d1x6ea2 g.37.1.1 (A:41-66) Zin 75.1 0.54 4E-05 23.9 1.2 11 73-83 3-13 (26)
7 d1x6ea1 g.37.1.1 (A:8-40) Zinc 38.2 6 0.00044 20.4 1.2 12 73-84 8-19 (33)
8 d1a1ia2 g.37.1.1 (A:132-159) Z 34.1 7.8 0.00057 19.3 1.2 12 73-84 4-15 (28)
9 d1x6ha2 g.37.1.1 (A:8-43) Tran 33.0 8.2 0.0006 19.9 1.2 12 73-84 9-20 (36)
10 d1mm0a_ g.3.7.4 (A:) Antimicro 32.7 5.1 0.00037 21.7 0.3 12 8-19 19-30 (36)
11 d2cota2 g.37.1.1 (A:7-44) Zinc 31.0 4.8 0.00035 21.1 -0.0 11 73-83 13-23 (38)
12 d2csha2 g.37.1.1 (A:61-104) Zi 27.7 12 0.00085 20.9 1.3 11 73-83 6-16 (44)
13 d1twfl_ g.41.9.2 (L:) RBP12 su 26.0 9 0.00066 21.6 0.6 12 73-84 22-33 (46)
14 d1sp1a_ g.37.1.1 (A:) Transcri 25.2 6.2 0.00045 19.8 -0.2 12 73-84 3-14 (29)
15 d1lkoa2 g.41.5.1 (A:148-191) R 24.4 27 0.0019 19.2 2.5 15 69-83 5-19 (44)
16 d1qypa_ g.41.3.1 (A:) RBP9 sub 24.0 23 0.0017 20.2 2.2 13 70-82 41-53 (57)
17 d1ubdc2 g.37.1.1 (C:323-350) Y 21.7 14 0.001 18.8 0.7 10 74-83 4-13 (28)
18 d2epsa1 g.37.1.1 (A:408-446) P 21.5 17 0.0013 19.1 1.2 12 72-83 5-16 (39)
19 d2adra1 g.37.1.1 (A:102-130) A 20.3 11 0.00079 18.7 0.1 12 73-84 3-14 (29)
No 1
>d1vqo31 g.41.8.3 (3:1-92) Ribosomal protein L44e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=100.00 E-value=1.1e-48 Score=269.60 Aligned_cols=92 Identities=22% Similarity=0.350 Sum_probs=90.8
Q ss_pred cccCceeeeeccCCCCCCccceEEEEeecCccchhhccceeeeccccCCCCcccceecCCCCccceeEEEEEecCCCcee
Q 034006 3 VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVS 82 (106)
Q Consensus 3 v~vPK~~~tyC~~~~C~kHt~HkVtqyKkGK~s~~aqG~Rrydrkq~GygGq~kpi~~k~aKtTKKi~Lrl~C~~C~~~~ 82 (106)
||||++++||| |+|++||+|+|+|||+|++|++|||+|||||+|.|||||++|+|.++|||||||||+|+|++|++++
T Consensus 1 MkiPK~~~tyC--p~CkkHt~HkV~~~Kkgk~s~~a~G~Rr~~Rk~~g~gg~~~~~~~~~aK~TKKi~Lr~~C~~C~k~~ 78 (92)
T d1vqo31 1 MQMPRRFNTYC--PHCNEHQEHEVEKVRSGRQTGMKWIDRQRERNSGIGNDGKFSKVPGGDKPTKKTDLKYRCGECGKAH 78 (92)
T ss_dssp CEEESEEEEEE--TTTTEEEEEEEEECCCCCCCSCSHHHHHHHHHCCSSCCGGGGCCCCCCCSSCBCCEEEEETTTCCEE
T ss_pred CCCCcceeccC--cccCCCccEEEEEeecCCCCHHHHhhHHHhhhccccCCCcCCCCCCCCCccceEEEEEEecccCcce
Confidence 89999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecceeeeeeEEee
Q 034006 83 QHPIKRCKHFEIGG 96 (106)
Q Consensus 83 ~~~~kR~KkfEl~~ 96 (106)
+++++|+++|||+.
T Consensus 79 ~~~~~R~kkfElve 92 (92)
T d1vqo31 79 LREGWRAGRLEFQE 92 (92)
T ss_dssp CCCCCBCSCCEEEC
T ss_pred eecceeeeeEEecC
Confidence 99999999999974
No 2
>d2j0161 g.41.8.6 (6:9-53) Ribosomal protein L33p {Thermus thermophilus [TaxId: 274]}
Probab=95.08 E-value=0.0022 Score=37.46 Aligned_cols=16 Identities=50% Similarity=1.111 Sum_probs=14.2
Q ss_pred eeeeeccCCCCCCccceE
Q 034006 8 TKKTYCKSKECRKHTLHK 25 (106)
Q Consensus 8 ~~~tyC~~~~C~kHt~Hk 25 (106)
+.+-|| |+|++||.|+
T Consensus 27 elkKyc--p~c~khtlHk 42 (45)
T d2j0161 27 ELRKYC--PWCRKHTVHR 42 (45)
T ss_dssp CCCCCC--CSSSCCCCCC
T ss_pred EEeccC--cCCCCeecee
Confidence 457899 9999999996
No 3
>d2gyc11 g.41.8.6 (1:1-52) Ribosomal protein L33p {Escherichia coli [TaxId: 562]}
Probab=90.91 E-value=0.028 Score=33.41 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=14.0
Q ss_pred eeeeeccCCCCCCccceE
Q 034006 8 TKKTYCKSKECRKHTLHK 25 (106)
Q Consensus 8 ~~~tyC~~~~C~kHt~Hk 25 (106)
+.+-|| |.|++|++|+
T Consensus 34 el~Ky~--p~~~khtlhk 49 (52)
T d2gyc11 34 ELKKFD--PVVRQHVIYK 49 (52)
T ss_dssp CCCCBC--CSSSSSBCCC
T ss_pred EEEccC--CCCCceeeEE
Confidence 457899 9999999996
No 4
>d2zjr11 g.41.8.6 (1:2-54) Ribosomal protein L33p {Deinococcus radiodurans [TaxId: 1299]}
Probab=89.30 E-value=0.065 Score=31.90 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.7
Q ss_pred eeeeeccCCCCCCccceEE
Q 034006 8 TKKTYCKSKECRKHTLHKV 26 (106)
Q Consensus 8 ~~~tyC~~~~C~kHt~HkV 26 (106)
+.+-|| |.|++|+.|+=
T Consensus 35 el~Kyd--P~~rkhvl~kE 51 (53)
T d2zjr11 35 ELKKYD--PVAKKHVVFRE 51 (53)
T ss_pred EEEccC--CCCcceeeEEe
Confidence 567899 99999999973
No 5
>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=79.65 E-value=0.41 Score=29.17 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=17.8
Q ss_pred eeeeeccCCCCCCccceEEEEee
Q 034006 8 TKKTYCKSKECRKHTLHKVTQYK 30 (106)
Q Consensus 8 ~~~tyC~~~~C~kHt~HkVtqyK 30 (106)
+-+-|| |+|+.+|..+|+-+=
T Consensus 21 ~~k~FC--pkCGn~TL~rvsvsv 41 (66)
T d2cona1 21 MNRVFC--GHCGNKTLKKVSVTI 41 (66)
T ss_dssp SSCCSC--SSSCCSCCEEEECBC
T ss_pred cccccC--cccCCCceeEEEEEE
Confidence 346899 999999999998664
No 6
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.12 E-value=0.54 Score=23.93 Aligned_cols=11 Identities=18% Similarity=0.579 Sum_probs=9.5
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
|+|.+||++..
T Consensus 3 y~C~eCgK~F~ 13 (26)
T d1x6ea2 3 YKCLECGKAFS 13 (26)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCcCeec
Confidence 79999999864
No 7
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.23 E-value=6 Score=20.44 Aligned_cols=12 Identities=17% Similarity=0.481 Sum_probs=9.9
Q ss_pred EEecCCCceeee
Q 034006 73 LQCQGCKHVSQH 84 (106)
Q Consensus 73 l~C~~C~~~~~~ 84 (106)
|+|.+|++....
T Consensus 8 y~C~~Cgk~F~~ 19 (33)
T d1x6ea1 8 YGCVECGKAFSR 19 (33)
T ss_dssp EECSSSCCEESS
T ss_pred eeCCCCCCEeCc
Confidence 899999998653
No 8
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.12 E-value=7.8 Score=19.32 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=9.9
Q ss_pred EEecCCCceeee
Q 034006 73 LQCQGCKHVSQH 84 (106)
Q Consensus 73 l~C~~C~~~~~~ 84 (106)
|+|.+|+++...
T Consensus 4 y~C~~C~k~F~~ 15 (28)
T d1a1ia2 4 FQCRICMRNFSR 15 (28)
T ss_dssp EECTTTCCEESC
T ss_pred ccCCCCcCEecc
Confidence 799999998653
No 9
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.01 E-value=8.2 Score=19.93 Aligned_cols=12 Identities=17% Similarity=0.628 Sum_probs=9.9
Q ss_pred EEecCCCceeee
Q 034006 73 LQCQGCKHVSQH 84 (106)
Q Consensus 73 l~C~~C~~~~~~ 84 (106)
|+|.+|+++...
T Consensus 9 y~C~~C~k~F~~ 20 (36)
T d1x6ha2 9 YACSHCDKTFRQ 20 (36)
T ss_dssp EECSSSSCEESS
T ss_pred EECCCCCCCcCC
Confidence 899999998653
No 10
>d1mm0a_ g.3.7.4 (A:) Antimicrobial peptide termicin {Termite (Pseudacanthotermes spiniger) [TaxId: 115113]}
Probab=32.70 E-value=5.1 Score=21.71 Aligned_cols=12 Identities=17% Similarity=1.018 Sum_probs=9.8
Q ss_pred eeeeeccCCCCC
Q 034006 8 TKKTYCKSKECR 19 (106)
Q Consensus 8 ~~~tyC~~~~C~ 19 (106)
.+++||+++.|.
T Consensus 19 FrrA~Cdgs~C~ 30 (36)
T d1mm0a_ 19 FRRAFCDRSQCK 30 (36)
T ss_dssp EEEEEEETTEEE
T ss_pred EEeeeecCCceE
Confidence 478999999884
No 11
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.02 E-value=4.8 Score=21.06 Aligned_cols=11 Identities=18% Similarity=0.622 Sum_probs=9.3
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
|+|.+||+...
T Consensus 13 y~C~~CgK~F~ 23 (38)
T d2cota2 13 YKCDECGKSFS 23 (38)
T ss_dssp SBCSSSCCBCS
T ss_pred EecCCCCceee
Confidence 78999999864
No 12
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.65 E-value=12 Score=20.95 Aligned_cols=11 Identities=18% Similarity=0.464 Sum_probs=10.1
Q ss_pred EEecCCCceee
Q 034006 73 LQCQGCKHVSQ 83 (106)
Q Consensus 73 l~C~~C~~~~~ 83 (106)
|+|..|+++.|
T Consensus 6 YeC~~C~KrFM 16 (44)
T d2csha2 6 YECNICAKRFM 16 (44)
T ss_dssp EECSSSCCEES
T ss_pred eeccchhhhhh
Confidence 89999999887
No 13
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.98 E-value=9 Score=21.64 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=8.6
Q ss_pred EEecCCCceeee
Q 034006 73 LQCQGCKHVSQH 84 (106)
Q Consensus 73 l~C~~C~~~~~~ 84 (106)
++|.+||...+.
T Consensus 22 irCreCG~RIlY 33 (46)
T d1twfl_ 22 VRCKDCGHRILL 33 (46)
T ss_dssp TCCSSSCCCCCB
T ss_pred EEeccCCcEEEE
Confidence 468888887763
No 14
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.17 E-value=6.2 Score=19.81 Aligned_cols=12 Identities=17% Similarity=0.517 Sum_probs=9.6
Q ss_pred EEecCCCceeee
Q 034006 73 LQCQGCKHVSQH 84 (106)
Q Consensus 73 l~C~~C~~~~~~ 84 (106)
|+|.+|++....
T Consensus 3 y~C~~C~k~F~~ 14 (29)
T d1sp1a_ 3 FACPECPKRFMR 14 (29)
T ss_dssp SCCTTTTCCCSC
T ss_pred EECCcCCCeecc
Confidence 689999998653
No 15
>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=24.44 E-value=27 Score=19.21 Aligned_cols=15 Identities=20% Similarity=0.598 Sum_probs=12.7
Q ss_pred eEEEEEecCCCceee
Q 034006 69 IVLRLQCQGCKHVSQ 83 (106)
Q Consensus 69 i~Lrl~C~~C~~~~~ 83 (106)
......|..||+.+.
T Consensus 5 ~~~~W~C~~CGyi~~ 19 (44)
T d1lkoa2 5 QATKWRCRNCGYVHE 19 (44)
T ss_dssp EEEEEEETTTCCEEE
T ss_pred CCeEEEcCCCCcEEE
Confidence 456899999999876
No 16
>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}
Probab=24.03 E-value=23 Score=20.18 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=11.2
Q ss_pred EEEEEecCCCcee
Q 034006 70 VLRLQCQGCKHVS 82 (106)
Q Consensus 70 ~Lrl~C~~C~~~~ 82 (106)
+|-|+|.+||..+
T Consensus 41 T~fy~C~~Cg~~w 53 (57)
T d1qypa_ 41 TIFYKCTKCGHTW 53 (57)
T ss_dssp EEEEEESSSCCEE
T ss_pred eEEEEeCCCCCcc
Confidence 7889999999864
No 17
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.69 E-value=14 Score=18.83 Aligned_cols=10 Identities=20% Similarity=0.527 Sum_probs=8.5
Q ss_pred EecCCCceee
Q 034006 74 QCQGCKHVSQ 83 (106)
Q Consensus 74 ~C~~C~~~~~ 83 (106)
-|.+||++..
T Consensus 4 vc~ecgkaf~ 13 (28)
T d1ubdc2 4 VCAECGKAFV 13 (28)
T ss_dssp ECTTTCCEES
T ss_pred hHHHHhHHHH
Confidence 5999999875
No 18
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.47 E-value=17 Score=19.13 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=9.8
Q ss_pred EEEecCCCceee
Q 034006 72 RLQCQGCKHVSQ 83 (106)
Q Consensus 72 rl~C~~C~~~~~ 83 (106)
-|.|.+|++...
T Consensus 5 py~C~~Cgk~F~ 16 (39)
T d2epsa1 5 PYICQSCGKGFS 16 (39)
T ss_dssp CEECSSSCCEES
T ss_pred CccCCCCCCCcC
Confidence 389999999864
No 19
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=20.33 E-value=11 Score=18.74 Aligned_cols=12 Identities=17% Similarity=0.565 Sum_probs=9.5
Q ss_pred EEecCCCceeee
Q 034006 73 LQCQGCKHVSQH 84 (106)
Q Consensus 73 l~C~~C~~~~~~ 84 (106)
|.|..|+++..+
T Consensus 3 ~~C~~C~k~F~~ 14 (29)
T d2adra1 3 FVCEVCTRAFAR 14 (29)
T ss_dssp BCCTTTCCCBSC
T ss_pred CCCCCCCCCCCC
Confidence 679999998653
Done!