BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034007
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AFA|A Chain A, The Human Nucleosome Structure
pdb|3AFA|E Chain E, The Human Nucleosome Structure
pdb|3AZI|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 139
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 4 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 55 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 98
>pdb|3AZH|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
Length = 139
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 4 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 55 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 98
>pdb|3AZG|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
Length = 139
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 4 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 55 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 98
>pdb|2CV5|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
pdb|1U35|A Chain A, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|E Chain E, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
Length = 136
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 1 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 51
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 52 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 95
>pdb|3LEL|A Chain A, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|E Chain E, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|K Chain K, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|O Chain O, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
Length = 136
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 1 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 51
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 52 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 95
>pdb|3AV1|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.2
Length = 139
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 4 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 55 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 98
>pdb|2HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein
pdb|1EQZ|C Chain C, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|G Chain G, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|C Chain C, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|G Chain G, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|C Chain C, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|G Chain G, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|C Chain C, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|G Chain G, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2F8N|A Chain A, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|2F8N|E Chain E, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 136
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 1 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 51
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 52 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 95
>pdb|3AZF|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
Length = 139
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 4 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 55 IRRYQKSTELLIRKLPFQRLVREIAQDF-QTDL-RFQSSAVMALQE 98
>pdb|1F66|A Chain A, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|E Chain E, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 136
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 1 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATGEV---KKPHRYRPGTVALRE 51
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 52 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 95
>pdb|3AZE|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
Length = 139
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 4 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
IRR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 55 IRRYQKSTELLIRQLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 98
>pdb|4H9S|A Chain A, Complex Structure 6 Of DaxxH3.3(SUB7)H4
pdb|4H9S|B Chain B, Complex Structure 6 Of DaxxH3.3(SUB7)H4
Length = 135
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 2 ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
ARTK AR+S+ +A P T R+S G +K R RPGT ALREI
Sbjct: 1 ARTKQTARKSTGGKA------PRKQLATKAARKSAPSTG---GVKKPHRYRPGTVALREI 51
Query: 62 RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
RR+QKS +LLI ++ F R VR I D+ RW A+ ALQE
Sbjct: 52 RRYQKSTELLIRKLPFQRLVREICQDF-KTDL-RWQSAAIGALQE 94
>pdb|3AYW|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
Length = 139
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 4 MARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
IRR+Q+S +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 55 IRRYQQSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 98
>pdb|3A6N|A Chain A, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|E Chain E, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
Length = 139
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 4 MARTKQTARKSTGGKA------PRKQLATKVARKSAPATG---GVKKPHRYRPGTVALRE 54
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
IRR+QKS +LLI ++ F R +R I D+ R+ A++ALQE
Sbjct: 55 IRRYQKSTELLIRKLPFQRLMREIAQDF-KTDL-RFQSSAVMALQE 98
>pdb|1P3B|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 60/110 (54%), Gaps = 21/110 (19%)
Query: 2 ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
ARTK AR+S+ R Q A KA S+P T GE +K R RPGT
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARK-SAPAT--------GES-----KKPHRYRPGTV 46
Query: 57 ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
ALREIRR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 47 ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94
>pdb|1P3K|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 60/110 (54%), Gaps = 21/110 (19%)
Query: 2 ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
ARTK AR+S+ R Q A KA S+P T GE +K R RPGT
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARK-SAPAT--------GES-----KKPHRYRPGTV 46
Query: 57 ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
ALREIRR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 47 ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94
>pdb|1P3A|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 60/110 (54%), Gaps = 21/110 (19%)
Query: 2 ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
ARTK AR+S+ R Q A KA S+P T GE +K R RPGT
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARK-SAPAT--------GES-----KKPHRYRPGTV 46
Query: 57 ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
ALREIRR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 47 ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94
>pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In
Complex With Its Chaperone Daxx
Length = 136
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 57/106 (53%), Gaps = 11/106 (10%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 1 MARTKQTARKSTGGKA------PRKQLATKAARKSAPSTG---GVKKPHRYRPGTVALRE 51
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
IRR+QKS +LLI ++ F R VR I D+ R+ A+ ALQE
Sbjct: 52 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSAAIGALQE 95
>pdb|1P34|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 60/110 (54%), Gaps = 21/110 (19%)
Query: 2 ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
ARTK AR+S+ R Q A KA S+P T GE +K R RPGT
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARK-SAPAT--------GES-----KKPHRYRPGTV 46
Query: 57 ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
ALREIRR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 47 ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94
>pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.3
Length = 139
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 57/106 (53%), Gaps = 11/106 (10%)
Query: 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALRE 60
MARTK AR+S+ +A P T R+S G +K R RPGT ALRE
Sbjct: 4 MARTKQTARKSTGGKA------PRKQLATKAARKSAPSTG---GVKKPHRYRPGTVALRE 54
Query: 61 IRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
IRR+QKS +LLI ++ F R VR I D+ R+ A+ ALQE
Sbjct: 55 IRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSAAIGALQE 98
>pdb|1P3L|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 60/110 (54%), Gaps = 21/110 (19%)
Query: 2 ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
ARTK AR+S+ R Q A KA S+P T GE +K R RPGT
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARK-SAPAT--------GES-----KKPHRYRPGTV 46
Query: 57 ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
ALREIRR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 47 ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94
>pdb|1P3M|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 60/110 (54%), Gaps = 21/110 (19%)
Query: 2 ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
ARTK AR+S+ R Q A KA S+P T GE +K R RPGT
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARK-SAPAT--------GES-----KKPHRYRPGTV 46
Query: 57 ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
ALREIRR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 47 ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94
>pdb|1ZLA|A Chain A, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|E Chain E, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 135
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 2 ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
ARTK AR+S+ +A P T R+S G +K R RPGT ALREI
Sbjct: 1 ARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALREI 51
Query: 62 RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
RR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 52 RRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94
>pdb|2IO5|B Chain B, Crystal Structure Of The Cia- Histone H3-H4 Complex
pdb|2NQB|A Chain A, Drosophila Nucleosome Structure
pdb|2NQB|E Chain E, Drosophila Nucleosome Structure
pdb|2PYO|A Chain A, Drosophila Nucleosome Core
pdb|2PYO|E Chain E, Drosophila Nucleosome Core
pdb|3C9K|C Chain C, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|G Chain G, Model Of Histone Octamer Tubular Crystals
Length = 135
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 2 ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
ARTK AR+S+ +A P T R+S G +K R RPGT ALREI
Sbjct: 1 ARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALREI 51
Query: 62 RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
RR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 52 RRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94
>pdb|1KX3|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|A Chain A, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|E Chain E, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1S32|A Chain A, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|E Chain E, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1ZBB|A Chain A, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|E Chain E, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|AA Chain a, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|EE Chain e, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|A Chain A, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|E Chain E, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2NZD|A Chain A, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|E Chain E, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|A Chain A, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|E Chain E, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|A Chain A, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|E Chain E, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3C1B|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3KUY|A Chain A, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|E Chain E, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3LJA|A Chain A, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|E Chain E, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3MGP|A Chain A, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|E Chain E, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|A Chain A, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|E Chain E, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|A Chain A, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|E Chain E, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|A Chain A, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|E Chain E, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MVD|A Chain A, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|E Chain E, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3LZ0|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3O62|A Chain A, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|E Chain E, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3MNN|A Chain A, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|E Chain E, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3TU4|A Chain A, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|E Chain E, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|A Chain A, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|E Chain E, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|A Chain A, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|E Chain E, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|A Chain A, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|E Chain E, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|A Chain A, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|E Chain E, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|A Chain A, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|E Chain E, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 135
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 2 ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
ARTK AR+S+ +A P T R+S G +K R RPGT ALREI
Sbjct: 1 ARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALREI 51
Query: 62 RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
RR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 52 RRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94
>pdb|3C1C|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 135
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 2 ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
ARTK AR+S+ +A P T R+S G +K R RPGT ALREI
Sbjct: 1 ARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALREI 51
Query: 62 RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
RR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 52 RRYQKSTELLIRKLPFQRLVREIAQDFX-TDL-RFQSSAVMALQE 94
>pdb|4H9O|A Chain A, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4
Length = 135
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 2 ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
ARTK AR+S+ +A P T R+S G +K R RPGT ALREI
Sbjct: 1 ARTKQTARKSTGGKA------PRKQLATKAARKSAPSTG---GVKKPHRYRPGTVALREI 51
Query: 62 RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
RR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 52 RRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSAAIMALQE 94
>pdb|3KXB|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
Length = 135
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 2 ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
ARTK AR+S+ +A P T R+S G +K R RPGT ALREI
Sbjct: 1 ARTKQTARKSTGGKA------PRKQLATKAARKSAPATG---GVKKPHRYRPGTVALREI 51
Query: 62 RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
RR+Q+S +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 52 RRYQESTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94
>pdb|4H9N|A Chain A, Complex Structure 1 Of DaxxH3.3(SUB5)H4
pdb|4H9Q|A Chain A, Complex Structure 4 Of Daxx(E225a)H3.3(SUB5)H4
Length = 135
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 2 ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
ARTK AR+S+ +A P T R+S G +K R RPGT ALREI
Sbjct: 1 ARTKQTARKSTGGKA------PRKQLATKAARKSAPSTG---GVKKPHRYRPGTVALREI 51
Query: 62 RRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
RR+QKS +LLI ++ F R VR I D+ R+ A+ ALQE
Sbjct: 52 RRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSAAIGALQE 94
>pdb|1ID3|A Chain A, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|E Chain E, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 135
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 57/110 (51%), Gaps = 21/110 (19%)
Query: 2 ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
ARTK AR+S+ R Q A KA S+P T +K R +PGT
Sbjct: 1 ARTKQTARKSTGGKAPRKQLASKAARK-SAPSTG-------------GVKKPHRYKPGTV 46
Query: 57 ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
ALREIRRFQKS +LLI ++ F R VR I D+ R+ A+ ALQE
Sbjct: 47 ALREIRRFQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAIGALQE 94
>pdb|1M18|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
Length = 135
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 56/110 (50%), Gaps = 21/110 (19%)
Query: 2 ARTKHMARRSS-----RLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTK 56
ARTK AR+S+ R Q KA +P T +K R RPGT
Sbjct: 1 ARTKQTARKSTGGKAPRKQLVTKAAKK-CAPATG-------------GVKKPHRYRPGTV 46
Query: 57 ALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
ALREIRR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 47 ALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 94
>pdb|1AOI|A Chain A, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|E Chain E, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 116
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 46 RKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQ 105
+K R RPGT ALREIRR+QKS +LLI ++ F R VR I D+ R+ A++ALQ
Sbjct: 17 KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQ 74
Query: 106 E 106
E
Sbjct: 75 E 75
>pdb|4H9P|A Chain A, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4
pdb|4H9R|A Chain A, Complex Structure 5 Of Daxx(E225a)H3.3(SUB5,G90A)H4
Length = 135
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 2 ARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61
ARTK AR+S+ +A P T R+S G +K R RPGT ALREI
Sbjct: 1 ARTKQTARKSTGGKA------PRKQLATKAARKSAPSTG---GVKKPHRYRPGTVALREI 51
Query: 62 RRFQKSVDLLIPRMSFIREVRTI 84
RR+QKS +LLI ++ F R VR I
Sbjct: 52 RRYQKSTELLIRKLPFQRLVREI 74
>pdb|3KWQ|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 98
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 49 QRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
R RPGT ALREIRR+Q+S +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 2 HRYRPGTVALREIRRYQESTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 57
>pdb|2YFV|A Chain A, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3,
Cse4 And H4
Length = 100
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 50 RLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRV-APPDVNRWTPEALIALQE 106
R +P AL EIR++Q+S DLLI RM F R V+ +T + + RW A++ALQE
Sbjct: 6 RYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQE 63
>pdb|1HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 93
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 53 PGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106
PGT ALREIRR+QKS +LLI ++ F R VR I D+ R+ A++ALQE
Sbjct: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDL-RFQSSAVMALQE 52
>pdb|2YFW|A Chain A, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|C Chain C, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|E Chain E, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|G Chain G, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
Length = 92
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 57 ALREIRRFQKSVDLLIPRMSFIREVRTITYRV-APPDVNRWTPEALIALQE 106
AL EIR++Q+S DLLI RM F R V+ +T + + RW A++ALQE
Sbjct: 1 ALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQE 51
>pdb|3AN2|A Chain A, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|E Chain E, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
Length = 143
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 58 LREIRRFQKSVDLLIPRMSFIREVRTITYRVA-PPDVNRWTPEALIALQE 106
L+EIR+ QKS LLI ++ F R R I + D N W +AL+ALQE
Sbjct: 51 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFN-WQAQALLALQE 99
>pdb|3R45|A Chain A, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex
With Chaperone Hjurp
Length = 156
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 58 LREIRRFQKSVDLLIPRMSFIREVRTITYRVA-PPDVNRWTPEALIALQE 106
L+EIR+ QKS LLI ++ F R R I + D N W +AL+ALQE
Sbjct: 64 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFN-WQAQALLALQE 112
>pdb|3NQU|A Chain A, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2
HETEROTETRAMER
Length = 140
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 58 LREIRRFQKSVDLLIPRMSFIREVRTITYRVA-PPDVNRWTPEALIALQE 106
L+EIR+ QKS LLI ++ F R R I + D N W +AL+ALQE
Sbjct: 48 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFN-WQAQALLALQE 96
>pdb|1DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
pdb|1DAP|B Chain B, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+
pdb|3DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+ And
The Inhibitor 5s-Isoxazoline
pdb|3DAP|B Chain B, C. Glutamicum Dap Dehydrogenase In Complex With Nadp+ And
The Inhibitor 5s-Isoxazoline
pdb|1F06|A Chain A, Three Dimensional Structure Of The Ternary Complex Of
Corynebacterium Glutamicum Diaminopimelate Dehydrogenase
Nadph-l-2-amino-6-methylene- Pimelate
pdb|1F06|B Chain B, Three Dimensional Structure Of The Ternary Complex Of
Corynebacterium Glutamicum Diaminopimelate Dehydrogenase
Nadph-l-2-amino-6-methylene- Pimelate
pdb|2DAP|A Chain A, C. Glutamicum Dap Dehydrogenase In Complex With Dap
Length = 320
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 9 RRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQ 49
RR +Q AV+ T P S + RR EAG+ T KRQ
Sbjct: 157 RRIPGVQKAVQYTLP-SEDALEKARRGEAGDLTGKQTHKRQ 196
>pdb|2HPI|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
Not Homologous: X-Ray Structure Of Dna Polymerase Iii
pdb|2HPM|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
Not Homologous: X-ray Structure Of Dna Polymerase Iii
Length = 1220
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 76 SFIREVRTITYRVAPPDVNR 95
+IR+ R + V PPDVNR
Sbjct: 856 EYIRDARALGIPVLPPDVNR 875
>pdb|3E0D|A Chain A, Insights Into The Replisome From The Crystral Structure Of
The Ternary Complex Of The Eubacterial Dna Polymerase
Iii Alpha-Subunit
pdb|3E0D|B Chain B, Insights Into The Replisome From The Crystral Structure Of
The Ternary Complex Of The Eubacterial Dna Polymerase
Iii Alpha-Subunit
Length = 1220
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 76 SFIREVRTITYRVAPPDVNR 95
+IR+ R + V PPDVNR
Sbjct: 856 EYIRDARALGIPVLPPDVNR 875
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.129 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,762,482
Number of Sequences: 62578
Number of extensions: 83938
Number of successful extensions: 191
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 149
Number of HSP's gapped (non-prelim): 45
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)