Query 034007
Match_columns 106
No_of_seqs 124 out of 564
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:42:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034007.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034007hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_C Histone H3; histone-fol 100.0 2.7E-41 9.2E-46 243.7 0.8 95 1-106 1-95 (136)
2 2yfv_A Histone H3-like centrom 99.9 1.6E-29 5.4E-34 174.2 1.1 61 46-106 2-63 (100)
3 3r45_A Histone H3-like centrom 99.9 7.5E-28 2.6E-32 176.8 1.5 73 31-106 39-112 (156)
4 3nqu_A Histone H3-like centrom 99.9 1E-27 3.5E-32 173.5 1.4 72 32-106 24-96 (140)
5 2hue_B Histone H3; mini beta s 99.5 6.3E-15 2.2E-19 97.1 1.4 36 69-106 1-36 (77)
6 3nqj_A Histone H3-like centrom 99.4 1.5E-14 5E-19 96.4 0.5 37 70-106 2-38 (82)
7 2ly8_A Budding yeast chaperone 99.4 9.5E-14 3.3E-18 98.2 2.2 36 71-106 1-37 (121)
8 2l5a_A Histone H3-like centrom 99.3 2.3E-13 8E-18 105.2 1.9 40 67-106 7-47 (235)
9 2r10_A Chromatin structure-rem 98.7 1.9E-09 6.5E-14 86.4 -0.3 50 3-61 3-52 (361)
10 2x4w_B Histone H3.2; transcrip 97.6 1.5E-05 5.2E-10 41.3 1.3 20 37-57 7-26 (26)
11 1b67_A Protein (histone HMFA); 97.1 8.2E-05 2.8E-09 46.3 0.4 28 72-106 3-30 (68)
12 1n1j_A NF-YB; histone-like PAI 96.4 0.00061 2.1E-08 44.8 0.2 36 66-106 3-38 (93)
13 1ku5_A HPHA, archaeal histon; 95.2 0.004 1.4E-07 38.8 0.4 29 71-106 6-34 (70)
14 3a1b_A DNA (cytosine-5)-methyl 94.5 0.0047 1.6E-07 45.1 -0.8 20 2-21 1-20 (159)
15 3avr_B Histone H3; cupin super 81.7 0.65 2.2E-05 23.4 1.4 19 32-51 7-25 (26)
16 2k3y_A Chromatin modification- 61.6 3.2 0.00011 29.3 1.4 15 37-52 122-136 (136)
17 1jfi_B DR1 protein, transcript 40.5 8.3 0.00028 28.2 0.8 36 65-106 9-44 (179)
18 2byk_B Chrac-14; nucleosome sl 36.5 12 0.00042 25.6 1.1 34 68-106 6-39 (128)
19 3b0c_W CENP-W, centromere prot 31.4 9.4 0.00032 23.6 -0.1 30 71-106 4-33 (76)
20 1rk8_C PYM protein, within the 31.4 14 0.00046 22.7 0.6 27 43-69 21-47 (58)
21 3b0b_C CENP-X, centromere prot 25.1 32 0.0011 21.9 1.6 29 78-106 11-39 (81)
22 4dra_E Centromere protein X; D 24.9 37 0.0013 21.9 1.9 29 78-106 15-43 (84)
No 1
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=100.00 E-value=2.7e-41 Score=243.73 Aligned_cols=95 Identities=43% Similarity=0.577 Sum_probs=52.1
Q ss_pred CCcccccccccCCcccccccCCCCCCCCccchhhhhcCCCCCCccccccccCCCchhhHHHHhhhcccccccccCchHHH
Q 034007 1 MARTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIRE 80 (106)
Q Consensus 1 MARtK~ta~kst~~k~~~k~~~~~~~~~~~~k~~~~~~~~~~~~~kk~~r~rpgt~alrEIr~yQkst~lLI~k~pF~RL 80 (106)
||||||+|+|||||++|+++++ +|+++++.|++ ++++++|||+||+++|+|||+||+||+||||++||+||
T Consensus 1 MARtk~tarkstggkaprk~l~--------~k~a~k~~p~~-~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RL 71 (136)
T 1tzy_C 1 MARTKQTARKSTGGKAPRKQLA--------TKAARKSAPAT-GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRL 71 (136)
T ss_dssp --------------------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHH
T ss_pred CCCCccccccCCCCCCCCcccc--------ccccccCCCCC-CCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHH
Confidence 9999999999999999999987 56566655554 88999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCcccccHHHHhhccC
Q 034007 81 VRTITYRVAPPDVNRWTPEALIALQE 106 (106)
Q Consensus 81 VreI~~~~~~~~~lRfq~~Al~ALQE 106 (106)
||||+++| ..++|||++||+||||
T Consensus 72 VREI~~~~--~~~~R~q~~Al~aLQe 95 (136)
T 1tzy_C 72 VREIAQDF--KTDLRFQSSAVMALQE 95 (136)
T ss_dssp HHHHHHHH--CTTCEECHHHHHHHHH
T ss_pred HHHHHHHh--hhhhcccHHHHHHHHH
Confidence 99999995 4689999999999997
No 2
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=99.95 E-value=1.6e-29 Score=174.18 Aligned_cols=61 Identities=43% Similarity=0.700 Sum_probs=29.4
Q ss_pred ccccccCCCchhhHHHHhhhcccccccccCchHHHHHHHhhhcCC-CCcccccHHHHhhccC
Q 034007 46 RKRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAP-PDVNRWTPEALIALQE 106 (106)
Q Consensus 46 kk~~r~rpgt~alrEIr~yQkst~lLI~k~pF~RLVreI~~~~~~-~~~lRfq~~Al~ALQE 106 (106)
+++|||+||++||+|||+||+||+|||||+||+||||||+++|.. ..++|||++||+||||
T Consensus 2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQe 63 (100)
T 2yfv_A 2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQE 63 (100)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHH
T ss_pred CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHH
Confidence 578999999999999999999999999999999999999999531 1389999999999997
No 3
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=99.93 E-value=7.5e-28 Score=176.78 Aligned_cols=73 Identities=37% Similarity=0.514 Sum_probs=34.8
Q ss_pred chhhhhcCCCCCCccccc-cccCCCchhhHHHHhhhcccccccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007 31 RQRRSEAGEGTPTAQRKR-QRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106 (106)
Q Consensus 31 ~k~~~~~~~~~~~~~kk~-~r~rpgt~alrEIr~yQkst~lLI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE 106 (106)
+++++++++++ |+++++ +||+||+ |+|||+||+||+|||+|+||+||||||+++|....++|||++||+||||
T Consensus 39 ~~aa~ksap~~-g~~~~~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQE 112 (156)
T 3r45_A 39 TPGPSRRGPSL-GASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQE 112 (156)
T ss_dssp ---------------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHH
T ss_pred CCCCCCCCCCC-CCCCCCCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHH
Confidence 45555566666 555544 8999998 9999999999999999999999999999996433689999999999997
No 4
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=99.93 E-value=1e-27 Score=173.53 Aligned_cols=72 Identities=38% Similarity=0.522 Sum_probs=34.9
Q ss_pred hhhhhcCCCCCCccc-cccccCCCchhhHHHHhhhcccccccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007 32 QRRSEAGEGTPTAQR-KRQRLRPGTKALREIRRFQKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106 (106)
Q Consensus 32 k~~~~~~~~~~~~~k-k~~r~rpgt~alrEIr~yQkst~lLI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE 106 (106)
++++++++++ |+++ +++||+||+ |+|||+||+||+|||+|+||+||||||+++|....++|||++||+||||
T Consensus 24 ~aa~~~~~~~-g~~~~~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQE 96 (140)
T 3nqu_A 24 PGPSRRGPSL-GASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQE 96 (140)
T ss_dssp --------------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHH
T ss_pred CCCCCCCCCC-CCCCCCCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHH
Confidence 3345555555 5555 455999998 9999999999999999999999999999996434689999999999997
No 5
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.48 E-value=6.3e-15 Score=97.12 Aligned_cols=36 Identities=36% Similarity=0.412 Sum_probs=32.9
Q ss_pred ccccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007 69 DLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106 (106)
Q Consensus 69 ~lLI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE 106 (106)
+|||||+||+||||||+++ +++++|||++||+||||
T Consensus 1 ~lli~k~PF~RLVRei~~~--~~~~~R~q~~Al~aLQe 36 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQD--FKTDLRFQSSAVMALQE 36 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHT--TCSSCEECHHHHHHHHH
T ss_pred CCccccchHHHHHHHHHHH--cCccccccHHHHHHHHH
Confidence 5899999999999999999 45789999999999997
No 6
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.43 E-value=1.5e-14 Score=96.37 Aligned_cols=37 Identities=38% Similarity=0.556 Sum_probs=33.4
Q ss_pred cccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007 70 LLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106 (106)
Q Consensus 70 lLI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE 106 (106)
|||||+||+||||||+++|....++|||++||.||||
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQe 38 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQE 38 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHH
Confidence 7999999999999999996333689999999999997
No 7
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.38 E-value=9.5e-14 Score=98.23 Aligned_cols=36 Identities=36% Similarity=0.594 Sum_probs=31.9
Q ss_pred ccccCchHHHHHHHhhhcCC-CCcccccHHHHhhccC
Q 034007 71 LIPRMSFIREVRTITYRVAP-PDVNRWTPEALIALQE 106 (106)
Q Consensus 71 LI~k~pF~RLVreI~~~~~~-~~~lRfq~~Al~ALQE 106 (106)
||||+||+||||||+++|.. ..++|||++||.||||
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQe 37 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQE 37 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHH
Confidence 79999999999999999632 2389999999999997
No 8
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=99.33 E-value=2.3e-13 Score=105.24 Aligned_cols=40 Identities=35% Similarity=0.557 Sum_probs=31.9
Q ss_pred ccccccccCchHHHHHHHhhhcCC-CCcccccHHHHhhccC
Q 034007 67 SVDLLIPRMSFIREVRTITYRVAP-PDVNRWTPEALIALQE 106 (106)
Q Consensus 67 st~lLI~k~pF~RLVreI~~~~~~-~~~lRfq~~Al~ALQE 106 (106)
.-.|||||+||+||||||+++|.. ..++|||++||.||||
T Consensus 7 ~~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQE 47 (235)
T 2l5a_A 7 HKKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQE 47 (235)
T ss_dssp ----CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHH
T ss_pred cccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHH
Confidence 346999999999999999999531 1389999999999997
No 9
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.68 E-value=1.9e-09 Score=86.43 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=12.8
Q ss_pred cccccccccCCcccccccCCCCCCCCccchhhhhcCCCCCCccccccccCCCchhhHHH
Q 034007 3 RTKHMARRSSRLQAAVKATPPTSSPGTSRQRRSEAGEGTPTAQRKRQRLRPGTKALREI 61 (106)
Q Consensus 3 RtK~ta~kst~~k~~~k~~~~~~~~~~~~k~~~~~~~~~~~~~kk~~r~rpgt~alrEI 61 (106)
||||+|+|||||++|+++++ .|+++++.+.. ++++++|||+||++|+.|.
T Consensus 3 ~tk~tarkstggkaprk~~~--------~k~~rk~~~~~-~~~kkp~R~rPGt~a~~e~ 52 (361)
T 2r10_A 3 DPFTTARKSTGGKAPRKGGM--------VVKKRKLATEA-GGSDERPKYLPGKHPKNQE 52 (361)
T ss_dssp ---------------------------------------------CCSSCCSCCBCCCS
T ss_pred cccccccCCCCCCCCCcccc--------ccccCCCCCCC-CCCCCCcccCCCccccccc
Confidence 89999999999999999886 45555444433 7889999999999998875
No 10
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=97.64 E-value=1.5e-05 Score=41.28 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=15.5
Q ss_pred cCCCCCCccccccccCCCchh
Q 034007 37 AGEGTPTAQRKRQRLRPGTKA 57 (106)
Q Consensus 37 ~~~~~~~~~kk~~r~rpgt~a 57 (106)
+.+.+ ++++++|||+||+||
T Consensus 7 ~~p~~-~~~kk~~RyRPGtvA 26 (26)
T 2x4w_B 7 SAPAT-GGVXKPHRYRXXXXX 26 (26)
T ss_pred CCCCC-CccccccccccccCC
Confidence 33444 778889999999986
No 11
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=97.14 E-value=8.2e-05 Score=46.28 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=25.2
Q ss_pred cccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007 72 IPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106 (106)
Q Consensus 72 I~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE 106 (106)
||++||+|||+++ + +.||+++|+.+|||
T Consensus 3 lP~a~v~Ri~k~~--~-----~~ris~~A~~~l~~ 30 (68)
T 1b67_A 3 LPIAPIGRIIKNA--G-----AERVSDDARIALAK 30 (68)
T ss_dssp SCHHHHHHHHHHT--T-----CSEECHHHHHHHHH
T ss_pred CCccHHHHHHhcC--C-----cccCCHHHHHHHHH
Confidence 7999999999998 2 57999999999985
No 12
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.38 E-value=0.00061 Score=44.82 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=28.2
Q ss_pred cccccccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007 66 KSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106 (106)
Q Consensus 66 kst~lLI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE 106 (106)
++++++||++++.|+++++..+ +.||+.+|+.+|||
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~~-----~~~is~dA~~~l~~ 38 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIPQ-----TGKIAKDAKECVQE 38 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSCT-----TCEECHHHHHHHHH
T ss_pred CcccccCChhHHHHHHHHhCCc-----cceeCHHHHHHHHH
Confidence 4678999999999999998543 57999999999885
No 13
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=95.23 E-value=0.004 Score=38.84 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=25.1
Q ss_pred ccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007 71 LIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106 (106)
Q Consensus 71 LI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE 106 (106)
.||+.||.||+|++ ...||+.+|+++|||
T Consensus 6 ~lp~a~v~Rl~r~~-------g~~ris~~a~~~l~e 34 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-------GAERVSEQAAKVLAE 34 (70)
T ss_dssp CSCHHHHHHHHHHT-------TCSEECHHHHHHHHH
T ss_pred cCChHHHHHHHHHc-------CcceeCHHHHHHHHH
Confidence 48999999999985 247999999999986
No 14
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=94.51 E-value=0.0047 Score=45.15 Aligned_cols=20 Identities=45% Similarity=0.424 Sum_probs=11.5
Q ss_pred CcccccccccCCcccccccC
Q 034007 2 ARTKHMARRSSRLQAAVKAT 21 (106)
Q Consensus 2 ARtK~ta~kst~~k~~~k~~ 21 (106)
|||||+|||||++|++.+|+
T Consensus 1 ~~~~~~~r~s~~~K~~~~~~ 20 (159)
T 3a1b_A 1 ARTKQTARKSTGGKAPRKQL 20 (159)
T ss_dssp CEEEECCCC-------CHHH
T ss_pred CccccccccccCCCcchHHH
Confidence 89999999999999998765
No 15
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
Probab=81.71 E-value=0.65 Score=23.37 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=11.0
Q ss_pred hhhhhcCCCCCCcccccccc
Q 034007 32 QRRSEAGEGTPTAQRKRQRL 51 (106)
Q Consensus 32 k~~~~~~~~~~~~~kk~~r~ 51 (106)
|.++++.+.. ++++++||.
T Consensus 7 Kaarks~p~~-~g~kk~hR~ 25 (26)
T 3avr_B 7 KAARXSAPAT-GGVKKPXXX 25 (26)
T ss_pred ccccCCCCCC-ccccccCCC
Confidence 3344444444 678888874
No 16
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=61.61 E-value=3.2 Score=29.32 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=11.7
Q ss_pred cCCCCCCccccccccC
Q 034007 37 AGEGTPTAQRKRQRLR 52 (106)
Q Consensus 37 ~~~~~~~~~kk~~r~r 52 (106)
+.|++ ||+|++||||
T Consensus 122 s~p~t-gGvkk~hr~r 136 (136)
T 2k3y_A 122 SAPAT-GGVXKPHRYR 136 (136)
T ss_dssp CSTTC-TTSCCCSSCC
T ss_pred cCCCC-CCccCCCcCC
Confidence 44444 9999999997
No 17
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=40.54 E-value=8.3 Score=28.25 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=27.7
Q ss_pred hcccccccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007 65 QKSVDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106 (106)
Q Consensus 65 Qkst~lLI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE 106 (106)
...-++.+|+.+..|+++++.- +.++..+|.++|+|
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp------~~rISkDA~~al~e 44 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP------NVRVANDARELVVN 44 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST------TCCBCHHHHHHHHH
T ss_pred CchhhhhcCHHHHHHHHHHhCC------ccccCHHHHHHHHH
Confidence 4556889999999999998752 46899999998874
No 18
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=36.51 E-value=12 Score=25.60 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=23.0
Q ss_pred cccccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007 68 VDLLIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106 (106)
Q Consensus 68 t~lLI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE 106 (106)
-++.+|..+..|++++..-+ ..++..+|+.+|++
T Consensus 6 ~d~~LP~A~I~rImK~~~pd-----~~~iS~dA~~~l~k 39 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEALPE-----SASVSKEARAAIAR 39 (128)
T ss_dssp -----CCSHHHHHHHHHSCT-----TCEECHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHhCcc-----cceECHHHHHHHHH
Confidence 36778999999999876543 46899999988763
No 19
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=31.40 E-value=9.4 Score=23.58 Aligned_cols=30 Identities=10% Similarity=0.131 Sum_probs=22.1
Q ss_pred ccccCchHHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007 71 LIPRMSFIREVRTITYRVAPPDVNRWTPEALIALQE 106 (106)
Q Consensus 71 LI~k~pF~RLVreI~~~~~~~~~lRfq~~Al~ALQE 106 (106)
.+|+++..|+++++.- +.++..+|.++|++
T Consensus 4 ~LP~A~V~rI~K~~~p------~~~is~~A~~~i~~ 33 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKP------HLRLAANTDLLVHL 33 (76)
T ss_dssp CCCHHHHHHHHHHHCT------TCEECTTHHHHHHH
T ss_pred cccccHHHHHHHHhCC------CCccCHHHHHHHHH
Confidence 5788888888887643 35788888877653
No 20
>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1
Probab=31.38 E-value=14 Score=22.68 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=14.0
Q ss_pred CccccccccCCCchhhHHHHhhhcccc
Q 034007 43 TAQRKRQRLRPGTKALREIRRFQKSVD 69 (106)
Q Consensus 43 ~~~kk~~r~rpgt~alrEIr~yQkst~ 69 (106)
|..+|..|.+||=+-.-|+..|+....
T Consensus 21 GT~RK~irVr~GY~Pqeev~~Y~~k~~ 47 (58)
T 1rk8_C 21 GTWRKARRVKDGYVPQEEVPLYESKGK 47 (58)
T ss_dssp SCEECCEECCTTCCC------------
T ss_pred CccccceeccCCcCCHHHhhhhhhhhh
Confidence 788999999999999999999998754
No 21
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=25.14 E-value=32 Score=21.90 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=21.3
Q ss_pred HHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007 78 IREVRTITYRVAPPDVNRWTPEALIALQE 106 (106)
Q Consensus 78 ~RLVreI~~~~~~~~~lRfq~~Al~ALQE 106 (106)
..|+..|.+.+|.....|.+.+|+.++.|
T Consensus 11 ~~lI~ril~~~f~~~ktrI~~dAl~l~ae 39 (81)
T 3b0b_C 11 KETVERLLRLHFRDGRTRVNGDALLLMAE 39 (81)
T ss_dssp HHHHHHHHHHHCCSTTCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHH
Confidence 35677777776555678999999987643
No 22
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=24.93 E-value=37 Score=21.86 Aligned_cols=29 Identities=17% Similarity=0.053 Sum_probs=21.7
Q ss_pred HHHHHHHhhhcCCCCcccccHHHHhhccC
Q 034007 78 IREVRTITYRVAPPDVNRWTPEALIALQE 106 (106)
Q Consensus 78 ~RLVreI~~~~~~~~~lRfq~~Al~ALQE 106 (106)
..||.+|.+.+|..+..|.+.+|+.++.|
T Consensus 15 ~~li~ril~~~F~~~kTkIs~dAl~l~ae 43 (84)
T 4dra_E 15 KELVSRLLHLHFKDDKTKVSGDALQLMVE 43 (84)
T ss_dssp HHHHHHHHHTTCSSTTCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 45777888876555778999999987643
Done!