Query 034008
Match_columns 106
No_of_seqs 52 out of 54
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 14:44:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_G GT-gamma; complex (GTP- 96.4 0.00083 2.8E-08 44.4 1.0 56 30-87 14-71 (73)
2 1fxk_C Protein (prefoldin); ar 90.3 0.44 1.5E-05 32.4 4.7 54 29-82 4-59 (133)
3 3ra3_B P2F; coiled coil domain 86.7 0.9 3.1E-05 25.3 3.5 25 29-53 3-27 (28)
4 2wg5_A General control protein 85.3 0.92 3.1E-05 30.9 3.8 35 31-65 12-46 (109)
5 3v5w_G G gamma-I, guanine nucl 81.6 0.62 2.1E-05 31.2 1.6 42 35-78 15-58 (77)
6 2er8_A Regulatory protein Leu3 81.2 1.3 4.5E-05 26.7 2.9 23 32-54 48-70 (72)
7 4dac_A Computationally designe 80.9 1.1 3.8E-05 24.9 2.2 23 29-51 4-26 (28)
8 2l5g_B Putative uncharacterize 79.4 2.7 9.1E-05 25.5 3.8 27 29-55 12-38 (42)
9 3m9b_A Proteasome-associated A 76.7 2.4 8.2E-05 33.5 3.9 24 30-53 72-95 (251)
10 1zme_C Proline utilization tra 76.1 1.6 5.4E-05 26.0 2.1 22 33-54 44-65 (70)
11 2zdi_C Prefoldin subunit alpha 75.8 1.7 5.7E-05 30.4 2.5 54 29-82 12-69 (151)
12 1a93_B MAX protein, coiled coi 74.5 3.6 0.00012 23.9 3.2 23 31-53 12-34 (34)
13 2lw1_A ABC transporter ATP-bin 74.2 4.1 0.00014 26.4 3.9 25 30-54 19-43 (89)
14 2ke4_A CDC42-interacting prote 74.1 3 0.0001 28.4 3.3 36 24-59 13-48 (98)
15 1htn_A Tetranectin; plasminoge 73.5 1.8 6.3E-05 29.8 2.2 27 32-58 21-47 (182)
16 1dh3_A Transcription factor CR 72.8 5 0.00017 24.4 3.9 28 26-53 15-42 (55)
17 1rtm_1 Mannose-binding protein 72.4 3.7 0.00013 27.1 3.5 25 31-55 2-26 (149)
18 1nkp_B MAX protein, MYC proto- 71.7 4.2 0.00014 25.9 3.4 16 35-50 63-78 (83)
19 1pwb_A SP-D, PSP-D, pulmonary 70.2 4.1 0.00014 27.9 3.4 21 34-54 32-52 (177)
20 2pbi_A Regulator of G-protein 69.7 2.4 8.2E-05 35.0 2.4 44 35-80 221-266 (424)
21 1t3j_A Mitofusin 1; coiled coi 69.3 6.3 0.00022 27.1 4.1 29 36-64 50-78 (96)
22 3d24_B Peroxisome proliferator 68.0 1.6 5.5E-05 24.1 0.7 21 56-76 4-24 (26)
23 1buu_A Protein (mannose-bindin 67.0 5 0.00017 27.4 3.3 25 30-54 20-44 (168)
24 3bbp_D GRIP and coiled-coil do 66.9 5.8 0.0002 26.3 3.4 24 33-56 43-66 (71)
25 2wuj_A Septum site-determining 66.3 6.1 0.00021 24.1 3.2 25 30-54 31-55 (57)
26 3viq_B Mating-type switching p 65.7 8 0.00028 26.1 4.0 27 28-54 3-29 (85)
27 1nkp_A C-MYC, MYC proto-oncoge 64.8 8.5 0.00029 25.2 3.9 25 30-54 63-87 (88)
28 4fla_A Regulation of nuclear P 63.3 17 0.00057 26.2 5.6 40 35-74 102-149 (152)
29 1nlw_A MAD protein, MAX dimeri 63.2 7.5 0.00026 25.1 3.4 17 33-49 61-77 (80)
30 2lw9_A Unconventionnal myosin- 62.8 6.4 0.00022 24.7 2.8 19 30-48 3-21 (51)
31 2z5i_A TM, general control pro 62.8 6.6 0.00023 23.9 2.9 18 34-51 13-30 (52)
32 2jn6_A Protein CGL2762, transp 62.2 0.65 2.2E-05 29.2 -1.9 26 31-56 64-89 (97)
33 1xaw_A Occludin; coiled-coil, 62.1 13 0.00044 27.1 4.8 47 29-75 62-109 (140)
34 3trt_A Vimentin; cytoskeleton, 60.1 13 0.00044 23.0 4.0 23 32-54 55-77 (77)
35 1cxz_B Protein (PKN); protein- 59.7 11 0.00039 25.4 3.9 27 28-54 58-84 (86)
36 2rjz_A PILO protein; structura 59.3 4.5 0.00015 28.5 1.9 45 25-69 7-51 (147)
37 3pbf_A Pulmonary surfactant-as 59.1 12 0.0004 24.4 3.8 36 28-64 4-57 (148)
38 3m91_A Proteasome-associated A 59.1 14 0.00047 22.6 3.9 24 29-52 26-49 (51)
39 3qx3_A DNA topoisomerase 2-bet 58.9 14 0.00047 33.5 5.4 40 32-71 733-772 (803)
40 1jnm_A Proto-oncogene C-JUN; B 58.7 10 0.00035 23.1 3.3 21 32-52 21-41 (62)
41 1t2k_D Cyclic-AMP-dependent tr 58.7 9.9 0.00034 23.0 3.2 22 31-52 20-41 (61)
42 2wvr_A Geminin; DNA replicatio 58.5 18 0.00062 28.1 5.3 45 32-76 121-166 (209)
43 1ci6_A Transcription factor AT 56.8 12 0.00041 23.1 3.4 20 34-53 31-50 (63)
44 4dzn_A Coiled-coil peptide CC- 56.6 13 0.00044 21.2 3.2 19 34-52 3-21 (33)
45 3l4j_A DNA topoisomerase 2; to 56.2 15 0.0005 33.1 5.0 39 32-70 706-744 (757)
46 2wt7_A Proto-oncogene protein 55.7 12 0.0004 23.0 3.2 23 31-53 21-43 (63)
47 2yf2_A C4B binding protein; im 55.6 14 0.00047 23.9 3.6 25 29-53 30-54 (65)
48 2ovc_A Potassium voltage-gated 55.1 21 0.0007 20.3 3.9 29 26-54 3-31 (33)
49 3kin_B Kinesin heavy chain; mo 54.6 14 0.00049 25.2 3.8 21 31-51 94-114 (117)
50 1wlq_A Geminin; coiled-coil; 2 53.9 27 0.00091 23.6 4.9 28 31-58 43-70 (83)
51 2dgc_A Protein (GCN4); basic d 52.9 20 0.0007 22.2 4.0 27 28-54 25-51 (63)
52 1t3j_A Mitofusin 1; coiled coi 52.8 27 0.00094 23.9 4.9 41 30-70 51-92 (96)
53 3viq_A SWI5-dependent recombin 52.8 34 0.0012 23.9 5.6 18 29-46 10-27 (122)
54 2ve7_A Kinetochore protein HEC 52.7 13 0.00043 29.2 3.7 25 34-58 186-210 (315)
55 3ol1_A Vimentin; structural ge 52.3 15 0.00052 25.1 3.6 19 38-56 88-106 (119)
56 1fxk_A Prefoldin; archaeal pro 52.1 18 0.00062 23.0 3.8 24 30-53 12-35 (107)
57 1hjb_A Ccaat/enhancer binding 51.3 15 0.00051 24.5 3.4 9 70-78 74-82 (87)
58 1nkp_B MAX protein, MYC proto- 51.1 21 0.00071 22.5 3.9 21 32-52 53-73 (83)
59 1yzm_A FYVE-finger-containing 51.0 18 0.00061 22.3 3.4 27 28-54 23-49 (51)
60 1am9_A Srebp-1A, protein (ster 50.7 11 0.00036 24.2 2.5 20 35-54 52-71 (82)
61 1lq7_A Alpha3W; three helix bu 50.5 10 0.00035 24.5 2.4 19 34-52 49-67 (67)
62 2zqm_A Prefoldin beta subunit 49.9 20 0.00069 23.1 3.8 22 32-53 12-33 (117)
63 1ci6_A Transcription factor AT 49.5 19 0.00066 22.2 3.5 25 29-53 19-43 (63)
64 3mq7_A Bone marrow stromal ant 49.2 17 0.0006 26.1 3.6 18 32-49 70-87 (121)
65 2yy0_A C-MYC-binding protein; 49.1 22 0.00076 21.6 3.6 24 29-52 22-45 (53)
66 2ve7_A Kinetochore protein HEC 48.7 24 0.00082 27.6 4.7 40 28-67 187-234 (315)
67 2zqm_A Prefoldin beta subunit 48.3 19 0.00065 23.2 3.5 22 32-53 69-90 (117)
68 1hwt_C Protein (heme activator 48.0 9 0.00031 23.2 1.7 20 33-52 58-77 (81)
69 1fxk_A Prefoldin; archaeal pro 47.6 20 0.00069 22.8 3.5 23 32-54 64-86 (107)
70 1z0k_B FYVE-finger-containing 47.5 19 0.00066 23.4 3.3 27 28-54 41-67 (69)
71 2akf_A Coronin-1A; coiled coil 47.3 29 0.00099 19.7 3.6 26 30-55 3-28 (32)
72 3pjs_K KCSA, voltage-gated pot 46.7 16 0.00054 25.5 3.0 26 32-57 137-162 (166)
73 1j2z_A Acyl-[acyl-carrier-prot 46.6 5.9 0.0002 29.4 0.8 34 45-78 224-257 (270)
74 2pr5_A Blue-light photorecepto 46.2 19 0.00066 21.6 3.1 28 25-52 104-131 (132)
75 3iv1_A Tumor susceptibility ge 46.1 28 0.00095 23.1 4.0 26 27-52 40-65 (78)
76 4fz4_A 0197-18KD, uncharacteri 46.0 20 0.0007 26.7 3.7 26 32-57 3-28 (154)
77 2nov_A DNA topoisomerase 4 sub 46.0 26 0.0009 29.8 4.8 48 28-75 351-398 (496)
78 2dq0_A Seryl-tRNA synthetase; 45.6 43 0.0015 27.5 5.9 49 29-83 72-120 (455)
79 1gd2_E Transcription factor PA 45.2 30 0.001 22.2 4.0 25 28-52 24-48 (70)
80 1ic2_A Tropomyosin alpha chain 44.9 23 0.00078 22.5 3.4 22 32-53 40-61 (81)
81 1hlo_A Protein (transcription 44.8 18 0.0006 22.8 2.8 19 35-53 59-77 (80)
82 3qne_A Seryl-tRNA synthetase, 44.6 46 0.0016 28.0 6.0 56 30-91 75-131 (485)
83 3nmd_A CGMP dependent protein 44.2 28 0.00097 22.8 3.8 15 29-43 22-36 (72)
84 1ybx_A Conserved hypothetical 43.3 20 0.00069 25.9 3.2 29 28-56 43-71 (143)
85 1gu4_A CAAT/enhancer binding p 43.2 30 0.001 22.5 3.8 17 36-52 53-69 (78)
86 1go4_E MAD1 (mitotic arrest de 43.2 24 0.00082 24.3 3.5 26 29-54 15-40 (100)
87 4gfh_A DNA topoisomerase 2; to 43.1 34 0.0012 31.8 5.3 38 33-70 1127-1164(1177)
88 3rrk_A V-type ATPase 116 kDa s 42.8 24 0.00081 26.9 3.7 24 29-52 229-252 (357)
89 3mq9_A Bone marrow stromal ant 42.8 21 0.00073 27.9 3.5 22 32-53 442-463 (471)
90 2zxx_A Geminin; coiled-coil, c 42.7 53 0.0018 21.8 5.0 17 35-51 36-52 (79)
91 3eff_K Voltage-gated potassium 41.9 22 0.00074 23.8 3.0 25 33-57 111-135 (139)
92 3a2a_A Voltage-gated hydrogen 41.9 26 0.00088 22.4 3.2 25 31-55 23-47 (58)
93 2vz4_A Tipal, HTH-type transcr 41.9 24 0.00082 22.8 3.2 26 29-54 77-102 (108)
94 1uii_A Geminin; human, DNA rep 41.8 31 0.0011 23.2 3.8 24 34-57 47-70 (83)
95 2inr_A DNA topoisomerase 4 sub 41.4 31 0.0011 29.5 4.6 48 28-75 375-422 (514)
96 3cve_A Homer protein homolog 1 41.2 28 0.00095 22.7 3.4 34 27-60 1-34 (72)
97 1x8y_A Lamin A/C; structural p 41.1 37 0.0013 22.0 4.0 25 29-53 24-48 (86)
98 2xcs_B DNA gyrase subunit B, D 41.0 35 0.0012 30.3 4.9 48 28-75 558-605 (692)
99 3kqg_A Langerin, C-type lectin 40.5 22 0.00077 23.9 3.0 27 29-55 12-38 (182)
100 3vmx_A Voltage-gated hydrogen 40.1 34 0.0012 21.0 3.4 27 29-55 14-40 (48)
101 1j8b_A YBAB; hypothetical prot 40.1 19 0.00065 24.6 2.5 28 29-56 11-38 (112)
102 3coq_A Regulatory protein GAL4 40.1 31 0.001 21.0 3.3 23 32-54 44-66 (89)
103 1am9_A Srebp-1A, protein (ster 39.6 38 0.0013 21.5 3.8 26 29-54 53-78 (82)
104 3efg_A Protein SLYX homolog; x 39.6 16 0.00056 23.6 2.0 22 32-53 13-34 (78)
105 1ses_A Seryl-tRNA synthetase; 39.3 56 0.0019 26.4 5.6 45 30-80 68-112 (421)
106 1txp_A HnRNP C, heterogeneous 39.1 50 0.0017 18.3 3.7 25 30-54 3-27 (28)
107 1hjb_A Ccaat/enhancer binding 38.9 28 0.00096 23.2 3.2 15 33-47 57-71 (87)
108 1zvu_A Topoisomerase IV subuni 38.7 37 0.0012 30.3 4.7 49 27-75 325-373 (716)
109 3err_A Fusion protein of micro 38.7 35 0.0012 28.8 4.4 58 29-92 176-233 (536)
110 1uuj_A Platelet-activating fac 38.5 11 0.00039 25.4 1.2 23 29-51 61-83 (88)
111 2cly_B ATP synthase D chain, m 38.3 33 0.0011 24.7 3.8 27 34-60 103-129 (160)
112 1t2k_D Cyclic-AMP-dependent tr 38.3 49 0.0017 19.8 4.0 21 33-53 36-56 (61)
113 3v86_A De novo design helix; c 38.3 49 0.0017 18.0 3.6 22 31-52 5-26 (27)
114 1lwu_B Fibrinogen beta chain; 37.5 18 0.00061 28.9 2.4 38 31-68 33-82 (323)
115 3lpx_A GYRA, DNA gyrase, A sub 37.5 40 0.0014 28.9 4.7 48 28-75 326-373 (500)
116 3ni0_A Bone marrow stromal ant 37.4 29 0.00098 24.2 3.1 23 31-53 65-87 (99)
117 1gk4_A Vimentin; intermediate 37.4 46 0.0016 21.3 4.0 24 29-52 22-45 (84)
118 3bj4_A Potassium voltage-gated 37.1 44 0.0015 20.5 3.6 29 27-55 11-39 (49)
119 2p22_A Suppressor protein STP2 37.1 30 0.001 25.7 3.4 29 26-54 56-84 (174)
120 3azd_A Short alpha-tropomyosin 36.9 18 0.0006 20.6 1.7 24 31-54 9-32 (37)
121 1r8d_A Transcription activator 36.8 38 0.0013 21.8 3.5 23 31-53 80-102 (109)
122 3qfl_A MLA10; coiled-coil, (CC 36.4 30 0.001 22.9 3.0 18 35-52 21-38 (115)
123 2doh_C Fragment, plasminogen-b 36.3 37 0.0012 19.1 2.9 20 32-52 7-26 (30)
124 2dq3_A Seryl-tRNA synthetase; 36.2 47 0.0016 26.8 4.7 47 30-82 72-118 (425)
125 2a26_A Calcyclin-binding prote 36.0 35 0.0012 20.6 3.0 17 36-52 30-46 (50)
126 1l8d_A DNA double-strand break 35.7 48 0.0016 21.3 3.9 22 32-53 70-91 (112)
127 1gmj_A ATPase inhibitor; coile 35.6 45 0.0015 22.4 3.8 26 30-55 37-66 (84)
128 2fxo_A Myosin heavy chain, car 35.5 43 0.0015 22.8 3.8 24 31-54 102-125 (129)
129 4b4t_J 26S protease regulatory 35.5 33 0.0011 28.1 3.7 26 30-55 43-68 (405)
130 1pyi_A Protein (pyrimidine pat 35.4 38 0.0013 21.0 3.3 23 32-54 47-69 (96)
131 2zvf_A Alanyl-tRNA synthetase; 35.3 45 0.0015 22.7 3.9 21 29-49 35-55 (171)
132 3swk_A Vimentin; cytoskeleton, 35.3 27 0.00094 22.7 2.6 20 36-55 66-85 (86)
133 2qup_A BH1478 protein; structu 35.0 42 0.0015 23.6 3.8 26 24-49 94-119 (145)
134 3a7p_A Autophagy protein 16; c 34.8 41 0.0014 24.8 3.8 23 29-51 71-93 (152)
135 1q08_A Zn(II)-responsive regul 34.3 69 0.0023 19.8 4.4 22 31-52 44-65 (99)
136 3tnu_B Keratin, type II cytosk 34.3 35 0.0012 23.2 3.2 25 32-56 35-59 (129)
137 1uii_A Geminin; human, DNA rep 34.2 84 0.0029 21.1 5.0 25 31-55 51-75 (83)
138 3gpv_A Transcriptional regulat 34.2 44 0.0015 23.0 3.7 18 36-53 98-115 (148)
139 2gkw_A TNF receptor-associated 34.1 48 0.0016 23.4 4.0 26 30-55 11-36 (192)
140 3ilw_A DNA gyrase subunit A; D 33.9 51 0.0017 27.9 4.7 48 28-75 337-384 (470)
141 3q8t_A Beclin-1; autophagy, AT 33.9 43 0.0015 22.2 3.5 24 31-54 9-32 (96)
142 1uk5_A BAG-family molecular ch 33.5 1E+02 0.0036 21.4 5.5 45 6-52 5-49 (111)
143 3u1c_A Tropomyosin alpha-1 cha 33.3 42 0.0014 22.2 3.4 21 33-53 44-64 (101)
144 1gmj_A ATPase inhibitor; coile 33.1 53 0.0018 22.1 3.8 24 29-52 47-70 (84)
145 2xv5_A Lamin-A/C; structural p 33.0 46 0.0016 21.4 3.4 21 32-52 4-24 (74)
146 3iv1_A Tumor susceptibility ge 32.9 58 0.002 21.5 4.0 25 30-54 50-74 (78)
147 3viq_A SWI5-dependent recombin 32.9 40 0.0014 23.5 3.3 27 29-55 3-29 (122)
148 1q06_A Transcriptional regulat 32.9 45 0.0015 22.5 3.5 25 30-54 83-107 (135)
149 2xkj_E Topoisomerase IV; type 32.8 45 0.0015 29.9 4.4 48 28-75 620-667 (767)
150 3mq7_A Bone marrow stromal ant 32.2 55 0.0019 23.5 4.0 25 31-55 76-100 (121)
151 2v4h_A NF-kappa-B essential mo 32.2 35 0.0012 24.0 2.9 25 28-52 85-109 (110)
152 2jee_A YIIU; FTSZ, septum, coi 32.1 58 0.002 21.6 3.9 24 30-53 10-33 (81)
153 4e61_A Protein BIM1; EB1-like 32.1 85 0.0029 21.8 4.9 43 34-76 19-73 (106)
154 2j5u_A MREC protein; bacterial 31.9 20 0.00067 27.2 1.7 47 25-71 18-64 (255)
155 1l8d_A DNA double-strand break 31.8 57 0.002 21.0 3.8 21 34-54 65-85 (112)
156 1wle_A Seryl-tRNA synthetase; 31.8 48 0.0016 27.8 4.2 49 31-85 121-169 (501)
157 1jnm_A Proto-oncogene C-JUN; B 31.8 72 0.0024 19.2 4.0 23 32-54 35-57 (62)
158 1z0j_B FYVE-finger-containing 31.7 46 0.0016 21.1 3.1 26 29-54 31-56 (59)
159 3v1a_A Computational design, M 31.5 46 0.0016 20.3 3.0 25 28-52 22-46 (48)
160 4e61_A Protein BIM1; EB1-like 31.5 52 0.0018 22.9 3.7 23 31-53 9-31 (106)
161 3a7o_A Autophagy protein 16; c 31.3 53 0.0018 21.9 3.5 21 30-50 22-42 (75)
162 1xl3_C Protein type A, secreti 30.7 16 0.00054 25.1 0.9 36 33-68 33-79 (92)
163 2wt7_A Proto-oncogene protein 30.7 76 0.0026 19.2 4.0 16 37-52 41-56 (63)
164 3r0s_A Acyl-[acyl-carrier-prot 30.6 29 0.00098 25.4 2.4 33 44-77 226-258 (266)
165 3qks_A DNA double-strand break 30.5 48 0.0016 23.2 3.5 24 31-54 173-196 (203)
166 1h7c_A Tubulin-specific chaper 30.2 70 0.0024 21.7 4.1 38 28-70 68-105 (108)
167 3hfe_A Potassium voltage-gated 30.1 59 0.002 18.4 3.1 26 27-52 4-29 (31)
168 4b4t_K 26S protease regulatory 29.6 56 0.0019 26.6 4.1 25 29-53 45-69 (428)
169 1yf2_A Type I restriction-modi 29.6 55 0.0019 23.9 3.8 34 23-56 376-409 (425)
170 1kd8_A GABH AIV, GCN4 acid bas 29.6 71 0.0024 18.6 3.5 29 31-59 6-34 (36)
171 2wt7_B Transcription factor MA 29.4 1.3E+02 0.0044 20.2 5.8 33 33-67 48-80 (90)
172 3hnw_A Uncharacterized protein 28.9 53 0.0018 23.1 3.5 13 40-52 117-129 (138)
173 4emc_A Monopolin complex subun 28.9 52 0.0018 25.1 3.6 19 35-53 36-54 (190)
174 2zvf_A Alanyl-tRNA synthetase; 28.6 61 0.0021 22.1 3.7 40 30-70 29-68 (171)
175 3i00_A HIP-I, huntingtin-inter 28.0 1.1E+02 0.0038 21.2 4.9 31 33-65 15-45 (120)
176 2apo_B Ribosome biogenesis pro 27.3 54 0.0018 20.6 2.9 15 21-35 37-51 (60)
177 3tnu_B Keratin, type II cytosk 27.2 78 0.0027 21.4 4.0 25 30-54 47-71 (129)
178 4etp_A Kinesin-like protein KA 27.1 56 0.0019 26.3 3.7 19 34-52 18-36 (403)
179 4etp_A Kinesin-like protein KA 27.0 53 0.0018 26.5 3.5 20 34-53 11-30 (403)
180 2l5g_A GPS2 protein, G protein 26.7 72 0.0024 18.8 3.2 19 34-52 16-34 (38)
181 3he5_A Synzip1; heterodimeric 26.4 58 0.002 19.8 2.8 33 35-70 5-37 (49)
182 2knp_A Mcocc-1; disulfide-rich 26.2 17 0.00057 20.8 0.3 7 99-105 15-21 (33)
183 3gpv_A Transcriptional regulat 26.1 84 0.0029 21.5 4.0 24 30-53 99-122 (148)
184 2wt7_B Transcription factor MA 26.0 88 0.003 21.0 4.0 21 31-51 53-73 (90)
185 1r8e_A Multidrug-efflux transp 26.0 64 0.0022 23.1 3.5 26 30-55 83-108 (278)
186 3pp5_A BRK1, protein brick1; t 26.0 66 0.0023 21.0 3.2 21 32-52 51-71 (73)
187 3lss_A Seryl-tRNA synthetase; 25.9 1.3E+02 0.0046 25.2 5.9 46 32-83 109-155 (484)
188 3tq7_B Microtubule-associated 25.9 25 0.00085 23.3 1.2 16 61-76 48-63 (82)
189 2ic6_A Nucleocapsid protein; h 25.6 54 0.0018 21.8 2.8 19 58-76 24-42 (78)
190 3tnu_A Keratin, type I cytoske 25.4 87 0.003 21.3 4.0 25 30-54 49-73 (131)
191 2inr_A DNA topoisomerase 4 sub 25.4 76 0.0026 27.2 4.3 43 33-75 454-501 (514)
192 2xdj_A Uncharacterized protein 25.3 83 0.0028 20.6 3.7 18 38-55 25-42 (83)
193 2v71_A Nuclear distribution pr 25.2 9.2 0.00032 28.9 -1.2 31 28-58 156-186 (189)
194 2p2u_A HOST-nuclease inhibitor 25.1 83 0.0028 22.5 4.0 13 64-76 67-79 (171)
195 3na7_A HP0958; flagellar bioge 25.0 70 0.0024 23.7 3.7 21 30-50 94-114 (256)
196 2v6v_A BUD emergence protein 1 24.9 1.2E+02 0.0041 21.2 4.7 52 37-88 100-151 (156)
197 3rrk_A V-type ATPase 116 kDa s 24.6 77 0.0026 24.0 3.9 35 21-55 214-248 (357)
198 1t6f_A Geminin; coiled-coil, c 24.3 1.1E+02 0.0039 17.8 3.8 24 30-53 11-34 (37)
199 3t97_C Nuclear pore glycoprote 24.3 72 0.0025 20.1 3.1 20 34-53 27-46 (64)
200 3mov_A Lamin-B1; LMNB1, B-type 23.9 1E+02 0.0035 20.4 4.0 24 30-53 34-57 (95)
201 2l6f_A Focal adhesion kinase 1 29.7 17 0.00056 28.4 0.0 46 34-81 21-66 (215)
202 1yf2_A Type I restriction-modi 23.7 83 0.0028 23.0 3.8 36 22-57 165-200 (425)
203 3mtu_A Tropomyosin alpha-1 cha 23.6 1.4E+02 0.0048 18.8 4.5 31 34-64 10-48 (75)
204 3gp4_A Transcriptional regulat 23.4 87 0.003 21.4 3.7 34 34-70 89-122 (142)
205 3q8t_A Beclin-1; autophagy, AT 23.3 98 0.0034 20.4 3.8 20 30-49 22-41 (96)
206 2lq4_p Lysophosphatidic acid r 23.2 20 0.00069 23.8 0.3 18 34-51 14-31 (80)
207 3na7_A HP0958; flagellar bioge 23.2 66 0.0022 23.9 3.2 21 34-54 91-111 (256)
208 1gax_A Valrs, valyl-tRNA synth 23.0 62 0.0021 28.6 3.5 30 25-54 792-821 (862)
209 3sja_C Golgi to ER traffic pro 22.9 88 0.003 20.0 3.3 21 33-53 32-52 (65)
210 2w6a_A ARF GTPase-activating p 22.6 71 0.0024 20.6 2.8 17 37-53 38-54 (63)
211 3ku8_A GYRA14, DNA gyrase subu 22.6 46 0.0016 24.2 2.2 47 29-75 16-62 (156)
212 3mud_A DNA repair protein XRCC 22.4 69 0.0024 24.0 3.2 17 34-50 136-152 (175)
213 3hnw_A Uncharacterized protein 22.3 84 0.0029 22.0 3.5 18 33-50 82-99 (138)
214 3sjb_C Golgi to ER traffic pro 22.2 1E+02 0.0034 21.0 3.7 27 34-60 50-76 (93)
215 2gd5_A Charged multivesicular 22.1 1.1E+02 0.0036 21.7 4.0 27 28-54 16-42 (179)
216 1fzc_C Fibrin; blood coagulati 21.7 91 0.0031 24.9 3.9 26 29-54 21-46 (319)
217 2k48_A Nucleoprotein; viral pr 21.7 67 0.0023 22.6 2.8 47 24-76 25-72 (107)
218 4emc_A Monopolin complex subun 21.5 82 0.0028 24.0 3.5 25 30-54 24-48 (190)
219 2nov_A DNA topoisomerase 4 sub 21.2 97 0.0033 26.4 4.2 43 33-75 430-477 (496)
220 2xu6_A MDV1 coiled coil; prote 21.1 1.4E+02 0.0048 19.5 4.1 30 25-54 33-63 (72)
221 3efg_A Protein SLYX homolog; x 20.8 1.1E+02 0.0039 19.5 3.6 17 35-51 44-60 (78)
222 2rbd_A BH2358 protein; putativ 20.7 1.1E+02 0.0036 21.1 3.7 23 32-55 53-75 (171)
223 1ydx_A Type I restriction enzy 20.5 1E+02 0.0035 23.0 3.8 32 25-56 354-385 (406)
224 2w83_C C-JUN-amino-terminal ki 20.4 1.4E+02 0.0047 19.8 4.0 26 28-53 32-57 (77)
225 2aus_D NOP10, ribosome biogene 20.4 68 0.0023 20.2 2.4 15 21-35 36-50 (60)
226 4i0x_B ESAT-6-like protein MAB 20.2 1.1E+02 0.0038 19.2 3.5 19 35-53 27-45 (103)
227 1ez3_A Syntaxin-1A; three heli 20.2 1.1E+02 0.0039 19.6 3.5 29 31-59 10-38 (127)
228 3v26_X ORF3, ORF95, probable s 20.1 1E+02 0.0035 20.0 3.3 29 22-52 67-95 (101)
No 1
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=96.40 E-value=0.00083 Score=44.39 Aligned_cols=56 Identities=29% Similarity=0.352 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhh--cCCCCCccccCCCCCch
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVE--AIPDPLLPITNGPLNPL 87 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve--s~pDPLLP~t~gp~n~s 87 (106)
+-++.+.+|.+++.+|..||. ++. -++|.+|.+++.|++ +.-||||+--..+.|+.
T Consensus 14 ~~~~~~~~lr~~veqLr~el~-~~R-ikVS~aa~~L~~Yce~~~~~DpLl~g~~~~~NPf 71 (73)
T 1got_G 14 EDLTEKDKLKMEVDQLKKEVT-LER-MLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPF 71 (73)
T ss_dssp --CTHHHHHHHHHHHHHHHTT-CCC-CCHHHHHHHHHHHHHHHGGGCHHHHCCCGGGCTT
T ss_pred cccccHHHHHHHHHHHHHHHC-Cch-hhHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCCC
Confidence 345688899999999999984 444 479999999999999 56999997333333543
No 2
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=90.30 E-value=0.44 Score=32.35 Aligned_cols=54 Identities=19% Similarity=0.382 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhc--CCCCCccccCC
Q 034008 29 HRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEA--IPDPLLPITNG 82 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves--~pDPLLP~t~g 82 (106)
.++++.+++|++++..|+..+..|+...+--.-|+|.+..+.. ..+=+.|.+.+
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~ 59 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAG 59 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCC
Confidence 4678899999999999999999999999988899999999884 33445665543
No 3
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=86.75 E-value=0.9 Score=25.31 Aligned_cols=25 Identities=36% Similarity=0.504 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 034008 29 HRIQAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~LE 53 (106)
+|+..+-.+|.|||.-||=|+.-||
T Consensus 3 rrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 5777788899999999999988776
No 4
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=85.31 E-value=0.92 Score=30.87 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 034008 31 IQAELKRLEQETRFLEEELEQLDKTEKASAACNET 65 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv 65 (106)
++++++.|++|+..|++||+.|.+.+-.-.-|-|+
T Consensus 12 l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~ 46 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDI 46 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 57899999999999999999998865443333333
No 5
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=81.57 E-value=0.62 Score=31.19 Aligned_cols=42 Identities=29% Similarity=0.377 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhc--CCCCCcc
Q 034008 35 LKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEA--IPDPLLP 78 (106)
Q Consensus 35 l~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves--~pDPLLP 78 (106)
|.++.+.+.-|.-|.. ++. -++|.+++||..|++. ..||||-
T Consensus 15 i~q~rk~VeQLr~Ea~-i~R-ikVSqaaadL~~yc~~~~~~DpLl~ 58 (77)
T 3v5w_G 15 IAQARKLVEQLKMEAN-IDR-IKVSKAAADLMAYCEAHAKEDPLLT 58 (77)
T ss_dssp HHHHHHHHHHHHHHHS-SCC-CCHHHHHHHHHHHHHHSGGGCTTTS
T ss_pred HHHHHHHHHHHHHHhc-cch-hhHHHHHHHHHHHHHhcCCCCCCcC
Confidence 4444455555554432 333 3699999999999987 6799984
No 6
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=81.23 E-value=1.3 Score=26.72 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 034008 32 QAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
...|+.||++|..|+..|+.|+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999988764
No 7
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=80.86 E-value=1.1 Score=24.94 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 034008 29 HRIQAELKRLEQETRFLEEELEQ 51 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~ 51 (106)
..+-|.+++||.|++-||.|...
T Consensus 4 ykldanvkrlekevgklegevar 26 (28)
T 4dac_A 4 YKLDANVKRLEKEVGKLEGEVAR 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred eeccccHHHHHHHHhhhhhhhhh
Confidence 35678899999999999987543
No 8
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=79.44 E-value=2.7 Score=25.45 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 034008 29 HRIQAELKRLEQETRFLEEELEQLDKT 55 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~LE~~ 55 (106)
-|+-+||.+.+++|.-||.-|++||..
T Consensus 12 ~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 12 DRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888899999999988888753
No 9
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=76.75 E-value=2.4 Score=33.54 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 034008 30 RIQAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE 53 (106)
++.++++.+.+||..|++||+.|-
T Consensus 72 ~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 72 KLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367788889999999999998874
No 10
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=76.10 E-value=1.6 Score=26.03 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 034008 33 AELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 33 ael~~LeqEi~fLeeEL~~LE~ 54 (106)
..|..|+++|..||..|..|+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999988888764
No 11
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=75.84 E-value=1.7 Score=30.38 Aligned_cols=54 Identities=26% Similarity=0.465 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh---hcchhHHHHHHHHHhhhh-cCCCCCccccCC
Q 034008 29 HRIQAELKRLEQETRFLEEELEQL---DKTEKASAACNETLRNVE-AIPDPLLPITNG 82 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~L---E~~~~aS~~CkEv~~~Ve-s~pDPLLP~t~g 82 (106)
..+++.++.|++++..|...+..| +..-+-..-+.+.+..+. ...+=|.|.+.+
T Consensus 12 ~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~ 69 (151)
T 2zdi_C 12 EKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAG 69 (151)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCC
Confidence 456788889999999999999999 555555555555555554 333446776653
No 12
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=74.49 E-value=3.6 Score=23.88 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 034008 31 IQAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE 53 (106)
-|++|..|.++...|++++..||
T Consensus 12 ~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 12 HQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHhhHHHHHHHHHHHHHHHHhcC
Confidence 46789999999999999998876
No 13
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=74.21 E-value=4.1 Score=26.42 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
..+-+|..|+.+|.-||.++..|+.
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~ 43 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQT 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888888888888888887764
No 14
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=74.06 E-value=3 Score=28.36 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=30.1
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 034008 24 DTRGKHRIQAELKRLEQETRFLEEELEQLDKTEKAS 59 (106)
Q Consensus 24 d~~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS 59 (106)
--.-|.+++++|..|+++|.-....-+.|++|..|-
T Consensus 13 peqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY 48 (98)
T 2ke4_A 13 PEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVY 48 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335678999999999999999888888888887763
No 15
>1htn_A Tetranectin; plasminogen binding, kringle 4, alpha-helical coiled coil, C-type lectin, carbohydrate recognition domain; 2.80A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1
Probab=73.54 E-value=1.8 Score=29.79 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhH
Q 034008 32 QAELKRLEQETRFLEEELEQLDKTEKA 58 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE~~~~a 58 (106)
...|..|++++..|+.+|..|..+..+
T Consensus 21 ~~~~~~L~~~~~~l~~~l~~l~~~~~~ 47 (182)
T 1htn_A 21 TKMFEELKSRLDTLSQEVALLKEQQAL 47 (182)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 345667888888888888888765333
No 16
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=72.78 E-value=5 Score=24.43 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=22.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 034008 26 RGKHRIQAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 26 ~GkhR~~ael~~LeqEi~fLeeEL~~LE 53 (106)
+.+.|.++-+..||.++..|+.|-..|.
T Consensus 15 rSR~RKk~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 15 ESRRKKKEYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999998877764
No 17
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=72.37 E-value=3.7 Score=27.12 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc
Q 034008 31 IQAELKRLEQETRFLEEELEQLDKT 55 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE~~ 55 (106)
+..+|+.|+++++-||.+|.+|.+.
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3567889999999999999888764
No 18
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=71.73 E-value=4.2 Score=25.86 Aligned_cols=16 Identities=19% Similarity=0.553 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 034008 35 LKRLEQETRFLEEELE 50 (106)
Q Consensus 35 l~~LeqEi~fLeeEL~ 50 (106)
+..|.+++..|+..|.
T Consensus 63 ~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 63 IDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 19
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=70.25 E-value=4.1 Score=27.87 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 034008 34 ELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~LE~ 54 (106)
.|+.|+.+++.|+.+|..|++
T Consensus 32 ~l~~L~~~l~~Lq~~l~~l~~ 52 (177)
T 1pwb_A 32 QVEALQGQVQHLQAAFSQYKK 52 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 377788888888888887764
No 20
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=69.69 E-value=2.4 Score=35.00 Aligned_cols=44 Identities=14% Similarity=0.247 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCC--CCCcccc
Q 034008 35 LKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIP--DPLLPIT 80 (106)
Q Consensus 35 l~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~p--DPLLP~t 80 (106)
+..+.+||.+|+-|| ..+. -++|.||.+++.+++... ||||.-.
T Consensus 221 ~~~~r~~veqLk~~l-~~~r-ikvS~~~e~l~~y~e~~~~~DPll~g~ 266 (424)
T 2pbi_A 221 VTAVRKEIMYYQQAL-MRST-VKSSVSLGGIVKYSEQFSSNDAIMSGC 266 (424)
T ss_dssp HHHHHHHHHHHHHHH-HSCC-CCHHHHHHHHHHHHHHHGGGCHHHHCC
T ss_pred HHHHHHHHHHHHHHh-cccc-eeHHHHHHHHHHHHHhhccCCCccccC
Confidence 456778888888887 3444 379999999999998765 9998543
No 21
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=69.30 E-value=6.3 Score=27.12 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 034008 36 KRLEQETRFLEEELEQLDKTEKASAACNE 64 (106)
Q Consensus 36 ~~LeqEi~fLeeEL~~LE~~~~aS~~CkE 64 (106)
+.|+.||.-|+.|+..||+++.-++..+-
T Consensus 50 ~eL~~EI~~L~~eI~~LE~iqs~aK~LRn 78 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLEKMQNNSKLLRN 78 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 56888999999999999998887775543
No 22
>3d24_B Peroxisome proliferator-activated receptor gamma coactivator 1-alpha; nuclear receptor, ligand binding domain, DNA- binding, metal-binding, nucleus; 2.11A {Homo sapiens}
Probab=68.03 E-value=1.6 Score=24.13 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHhhhhcCCCCC
Q 034008 56 EKASAACNETLRNVEAIPDPL 76 (106)
Q Consensus 56 ~~aS~~CkEv~~~Ves~pDPL 76 (106)
.+.|+-|-||+..+-+.+|++
T Consensus 4 ~~qrRpCtELlKyLTs~~~~~ 24 (26)
T 3d24_B 4 KPQRRPCSELLKYLTTNDDXX 24 (26)
T ss_pred CccCCcHHHHHHHHhcCCccc
Confidence 678999999999999998875
No 23
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=67.01 E-value=5 Score=27.37 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
=+..+|+.|+++++.|+.+|..|++
T Consensus 20 ~~~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 20 AIEVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455689999999999999988765
No 24
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=66.89 E-value=5.8 Score=26.33 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcch
Q 034008 33 AELKRLEQETRFLEEELEQLDKTE 56 (106)
Q Consensus 33 ael~~LeqEi~fLeeEL~~LE~~~ 56 (106)
|...+|-.+|++|++||..||.-+
T Consensus 43 atnarL~eq~~lLK~EIRRlERnq 66 (71)
T 3bbp_D 43 ATNAILMEQIKLLKSEIRRLERNQ 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHHhhH
Confidence 557789999999999999998754
No 25
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=66.34 E-value=6.1 Score=24.08 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
++..++..|.+|+.-|+++|+.|+.
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667788899999999999888763
No 26
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=65.73 E-value=8 Score=26.11 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
+-+++++|+.|+.++.-|+.|+.+++.
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999988763
No 27
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=64.81 E-value=8.5 Score=25.18 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
++.+++..|.++...|+.+|++|.+
T Consensus 63 ~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 63 KLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455566677777777777777764
No 28
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=63.29 E-value=17 Score=26.22 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHhh--------cchhHHHHHHHHHhhhhcCCC
Q 034008 35 LKRLEQETRFLEEELEQLD--------KTEKASAACNETLRNVEAIPD 74 (106)
Q Consensus 35 l~~LeqEi~fLeeEL~~LE--------~~~~aS~~CkEv~~~Ves~pD 74 (106)
+++|+.=+.|.++.|.+.+ ++..++.+|+||.+-|.+=||
T Consensus 102 ~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sLPD 149 (152)
T 4fla_A 102 ARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSLPD 149 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 3456666666666665554 467788899999999999988
No 29
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=63.18 E-value=7.5 Score=25.14 Aligned_cols=17 Identities=29% Similarity=0.636 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034008 33 AELKRLEQETRFLEEEL 49 (106)
Q Consensus 33 ael~~LeqEi~fLeeEL 49 (106)
+++..|.+|+..|+.+|
T Consensus 61 ~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 61 HQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 30
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=62.81 E-value=6.4 Score=24.67 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 034008 30 RIQAELKRLEQETRFLEEE 48 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeE 48 (106)
|.+-+|-+||+||.-|+.-
T Consensus 3 rQ~EEILRLErEIE~Lqrq 21 (51)
T 2lw9_A 3 KQVEEILRLEKEIEDLQRM 21 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999853
No 31
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=62.81 E-value=6.6 Score=23.89 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034008 34 ELKRLEQETRFLEEELEQ 51 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~ 51 (106)
.|++|+.+|.-||++|..
T Consensus 13 sV~KLek~ID~LEdeL~~ 30 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478899999999988863
No 32
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=62.19 E-value=0.65 Score=29.19 Aligned_cols=26 Identities=8% Similarity=0.189 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcch
Q 034008 31 IQAELKRLEQETRFLEEELEQLDKTE 56 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE~~~ 56 (106)
..++|++|++|+..|+.|++.|.+..
T Consensus 64 ~~~ei~~L~~e~~~L~~e~~~Lkk~~ 89 (97)
T 2jn6_A 64 EAEQIRQLKKENALQRARTRHPAESC 89 (97)
T ss_dssp THHHHHHHHHCGGGGGGTTSCCCGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888877776654
No 33
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=62.14 E-value=13 Score=27.08 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHhhhhcCCCC
Q 034008 29 HRIQAELKRLEQETRFLEEELEQL-DKTEKASAACNETLRNVEAIPDP 75 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~L-E~~~~aS~~CkEv~~~Ves~pDP 75 (106)
..++|+|..+.+++.-|..+|+.| +|......+..|-..+=+.+.||
T Consensus 62 k~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i~~EY~r~k~~K~dp 109 (140)
T 1xaw_A 62 KSLQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSA 109 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCc
Confidence 468899999999999999999985 45555555666655543333343
No 34
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=60.05 E-value=13 Score=23.04 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 034008 32 QAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
..||..|.+.|..|+-||++|-|
T Consensus 55 k~Ei~elrr~iq~L~~el~slk~ 77 (77)
T 3trt_A 55 KQESTEYRRQVQSLTMEVDALKG 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Confidence 46788899999999999988754
No 35
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=59.66 E-value=11 Score=25.36 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
+-+...+|.-.++.|..|++||.+|+.
T Consensus 58 ~~~V~~eL~~sn~kl~~L~~eL~eL~a 84 (86)
T 1cxz_B 58 LGPVELLLRGSSRRLDLLHQQLQELHA 84 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 346778899999999999999999975
No 36
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=59.26 E-value=4.5 Score=28.47 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=35.6
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhh
Q 034008 25 TRGKHRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNV 69 (106)
Q Consensus 25 ~~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~V 69 (106)
+.-|.+..|.|..|.+|+..|+++|+.+...=|...---.|++.|
T Consensus 7 ~~~k~~~aa~L~~l~~ql~~l~~~l~~l~~~LP~~~em~~LL~~i 51 (147)
T 2rjz_A 7 FSTKAFQAANLEAYKAQMKEMEESFGALLRQLPSDTEVPGLLEDI 51 (147)
T ss_dssp HHHTGGGCSSHHHHHHHHHHHHHHHHHHHHTTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 456788899999999999999999999888777666555555554
No 37
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=59.15 E-value=12 Score=24.40 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcc------------------hhHHHHHHH
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQLDKT------------------EKASAACNE 64 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~LE~~------------------~~aS~~CkE 64 (106)
+.+++.+|+.|+.+|..|+..| ++.+. ..|...|+.
T Consensus 4 ~e~l~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~Cy~~~~~~~tw~~A~~~C~~ 57 (148)
T 3pbf_A 4 DEELQTELYEIKHQILQTMGVL-SLQGSMLSVGDKVFSTNGQSVNFDTIKEMCTR 57 (148)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HHTTSCEEETTEEEEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhcceeeCCEEEEEcCCccCHHHHHHHHhh
Confidence 3578889999999999999998 66543 357778876
No 38
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=59.09 E-value=14 Score=22.64 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 034008 29 HRIQAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~L 52 (106)
+|+.+.|+.--+||.-|.+||+.|
T Consensus 26 ~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 26 SKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666777788888777765
No 39
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=58.93 E-value=14 Score=33.53 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhc
Q 034008 32 QAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEA 71 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves 71 (106)
.-++++|.+|+..+++||+.|.++.+..-=.++|..|++.
T Consensus 733 ~E~~~kL~~q~~~k~~El~~L~~~t~~dlW~~DLd~f~~~ 772 (803)
T 3qx3_A 733 KEKVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEE 772 (803)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999998753
No 40
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=58.71 E-value=10 Score=23.09 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 034008 32 QAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~L 52 (106)
...+..|+.++..|+.|-..|
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L 41 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSEL 41 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555554444444333
No 41
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=58.70 E-value=9.9 Score=23.02 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 034008 31 IQAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~L 52 (106)
....+..|+.++.+|+.|-..|
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L 41 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQL 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555544444
No 42
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=58.46 E-value=18 Score=28.09 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhh-hcCCCCC
Q 034008 32 QAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNV-EAIPDPL 76 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~V-es~pDPL 76 (106)
+.+|..|+.||.-|++|+++|-.+-.......+|+.-+ +..+|-|
T Consensus 121 h~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~ 166 (209)
T 2wvr_A 121 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNF 166 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 34566677777777777888877777777777776544 4444544
No 43
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=56.80 E-value=12 Score=23.14 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 034008 34 ELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~LE 53 (106)
+++.|+++..-|+.++..|+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 44
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=56.65 E-value=13 Score=21.24 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 034008 34 ELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~L 52 (106)
||..|.|||.-|+.|+.-|
T Consensus 3 eiaalkqeiaalkkeiaal 21 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAAL 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5666777777777766544
No 45
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=56.19 E-value=15 Score=33.13 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhh
Q 034008 32 QAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVE 70 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve 70 (106)
.-++++|.+|+..+++||+.|.++.+..-=+++|..|.+
T Consensus 706 ~E~~~kL~~q~~~k~~El~~L~~~t~~dlW~~DLd~f~~ 744 (757)
T 3l4j_A 706 KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEV 744 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999999875
No 46
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=55.72 E-value=12 Score=23.00 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 034008 31 IQAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE 53 (106)
.+..+..|++++..|+.+-..|.
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~ 43 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQ 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555655555555544443
No 47
>2yf2_A C4B binding protein; immune system, complement system; 2.24A {Gallus gallus}
Probab=55.64 E-value=14 Score=23.89 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 034008 29 HRIQAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~LE 53 (106)
-|-..||+.|=-||+-|+.||..|-
T Consensus 30 ~rTLLEi~KL~LEIQKL~~EL~gls 54 (65)
T 2yf2_A 30 VKTLLEIRKLFLEIQKLKVELQGLS 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchh
Confidence 3667888999999999998887764
No 48
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=55.14 E-value=21 Score=20.32 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=24.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 26 RGKHRIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 26 ~GkhR~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
.++--|.+.+-++|+++..++.-|++|=+
T Consensus 3 ~~~~Sm~~Rl~kVE~qv~~md~KLd~l~~ 31 (33)
T 2ovc_A 3 VDEISMMGRVVKVEKQVQSIEHKLDLLLG 31 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666889999999999999999988744
No 49
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=54.58 E-value=14 Score=25.21 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 034008 31 IQAELKRLEQETRFLEEELEQ 51 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~ 51 (106)
...+++.|..+|..||+||+.
T Consensus 94 e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 94 EKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445566666677777776654
No 50
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=53.87 E-value=27 Score=23.59 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 034008 31 IQAELKRLEQETRFLEEELEQLDKTEKA 58 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE~~~~a 58 (106)
++..|..++.||.-|++|+++|--+-.-
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666777777777777554433
No 51
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=52.91 E-value=20 Score=22.19 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=20.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
+.|.++.+..|+.++..|+.|-..|..
T Consensus 25 R~RK~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 25 RARKLQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888887777654
No 52
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=52.77 E-value=27 Score=23.90 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcchh-HHHHHHHHHhhhh
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDKTEK-ASAACNETLRNVE 70 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~~~~-aS~~CkEv~~~Ve 70 (106)
-|..||++|++||.-||.=...+-.+-. |.--=.||..|-+
T Consensus 51 eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 51 HLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999888876665555544 5555667766654
No 53
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=52.77 E-value=34 Score=23.91 Aligned_cols=18 Identities=17% Similarity=0.351 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 034008 29 HRIQAELKRLEQETRFLE 46 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLe 46 (106)
.+++++|+.|+.++..|+
T Consensus 10 ~~L~~~i~~l~~~L~~lk 27 (122)
T 3viq_A 10 LKLEKEVRNLQEQLITAE 27 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555554443
No 54
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=52.74 E-value=13 Score=29.20 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhH
Q 034008 34 ELKRLEQETRFLEEELEQLDKTEKA 58 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~LE~~~~a 58 (106)
++..|+.++.-|++|+++||+.-.+
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~ 210 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERST 210 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777777777777665333
No 55
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=52.32 E-value=15 Score=25.07 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhhcch
Q 034008 38 LEQETRFLEEELEQLDKTE 56 (106)
Q Consensus 38 LeqEi~fLeeEL~~LE~~~ 56 (106)
||.+|..|+|||..|-++.
T Consensus 88 LE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 88 LERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666666655443
No 56
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=52.12 E-value=18 Score=23.03 Aligned_cols=24 Identities=8% Similarity=0.292 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 034008 30 RIQAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE 53 (106)
+++.+++.|.+++..|+.+++.++
T Consensus 12 ~lq~~~~~l~~q~~~l~~~~~e~~ 35 (107)
T 1fxk_A 12 QLQQQAQAISVQKQTVEMQINETQ 35 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555443
No 57
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=51.32 E-value=15 Score=24.51 Aligned_cols=9 Identities=44% Similarity=1.110 Sum_probs=0.8
Q ss_pred hcCCCCCcc
Q 034008 70 EAIPDPLLP 78 (106)
Q Consensus 70 es~pDPLLP 78 (106)
-..|++++.
T Consensus 74 ~~~p~~~~~ 82 (87)
T 1hjb_A 74 KQLPEPLLA 82 (87)
T ss_dssp HC-------
T ss_pred HHCcHHHhc
Confidence 346666664
No 58
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=51.05 E-value=21 Score=22.49 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 034008 32 QAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~L 52 (106)
+.+++.|+.|+..|+.|...|
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 59
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=51.04 E-value=18 Score=22.35 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=22.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
+.|..-||..|+.-++-|++|+..++.
T Consensus 23 ~~~r~DEV~~Le~NLrEL~~ei~~~~~ 49 (51)
T 1yzm_A 23 AAGRMDEVRTLQENLRQLQDEYDQQQT 49 (51)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677999999999999999988874
No 60
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=50.67 E-value=11 Score=24.21 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 034008 35 LKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 35 l~~LeqEi~fLeeEL~~LE~ 54 (106)
|+.|++++..|++|...|..
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555543
No 61
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=50.54 E-value=10 Score=24.51 Aligned_cols=19 Identities=47% Similarity=0.802 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 034008 34 ELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~L 52 (106)
+++..+.|+.-|+||++.|
T Consensus 49 evkkveeevkkleeeikkl 67 (67)
T 1lq7_A 49 EVKKVEEEVKKLEEEIKKL 67 (67)
T ss_dssp THHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHhcC
Confidence 5677888888888888754
No 62
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=49.88 E-value=20 Score=23.09 Aligned_cols=22 Identities=9% Similarity=0.320 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 034008 32 QAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE 53 (106)
.+++++|++++.-|..++..|+
T Consensus 12 i~~~~~l~~~~~~l~~q~~~l~ 33 (117)
T 2zqm_A 12 LGQLESYQQQLQLVVQQKQKVQ 33 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455544444444443
No 63
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=49.53 E-value=19 Score=22.16 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 034008 29 HRIQAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~LE 53 (106)
.|..++++.|++++.-|+.+-.+|+
T Consensus 19 ~KKk~~~~~le~~~~~L~~~N~~L~ 43 (63)
T 1ci6_A 19 QKKRAEQEALTGECKELEKKNEALK 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555544443
No 64
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=49.25 E-value=17 Score=26.09 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034008 32 QAELKRLEQETRFLEEEL 49 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL 49 (106)
++.++.|+-||.-|.++|
T Consensus 70 q~~vqeLqgEI~~Lnq~L 87 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKL 87 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 65
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=49.09 E-value=22 Score=21.56 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 034008 29 HRIQAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~L 52 (106)
--+++|+..|.+++.-|++++++|
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555554
No 66
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=48.67 E-value=24 Score=27.59 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=30.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhc--------chhHHHHHHHHHh
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQLDK--------TEKASAACNETLR 67 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~LE~--------~~~aS~~CkEv~~ 67 (106)
...+.+++++|+.||.-||.+.+.+.+ ++.+..-+++.+-
T Consensus 187 ie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk~~~~~~~~LG 234 (315)
T 2ve7_A 187 LESLEAKNRALNEQIARLEQERSTANKANAERLKRLQKSADLYKDRLG 234 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHcc
Confidence 457788999999999999888877766 3666666666654
No 67
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=48.31 E-value=19 Score=23.22 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 034008 32 QAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE 53 (106)
-..+..|+..+.+|+++++.|+
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le 90 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555544
No 68
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=48.00 E-value=9 Score=23.22 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 034008 33 AELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 33 ael~~LeqEi~fLeeEL~~L 52 (106)
.+++.|+..|..||..|.+|
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555666666665555443
No 69
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=47.61 E-value=20 Score=22.80 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 034008 32 QAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
--.+..|+..+.+++++++.|++
T Consensus 64 ~e~~~~L~~~~e~i~~~i~~le~ 86 (107)
T 1fxk_A 64 DELTEELQEKLETLQLREKTIER 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555543
No 70
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=47.51 E-value=19 Score=23.42 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=22.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
+.|..-||..|++-++-|++|+..++.
T Consensus 41 ~~~r~DEV~tLe~NLrEL~~ei~~~q~ 67 (69)
T 1z0k_B 41 AAGRMDEVRTLQENLRQLQDEYDQQQT 67 (69)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 556677899999999999999988864
No 71
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=47.29 E-value=29 Score=19.73 Aligned_cols=26 Identities=27% Similarity=0.580 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcc
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDKT 55 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~~ 55 (106)
|+..++..|+.=++.||+-++.||.+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778888888888888887754
No 72
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=46.73 E-value=16 Score=25.49 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchh
Q 034008 32 QAELKRLEQETRFLEEELEQLDKTEK 57 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE~~~~ 57 (106)
.+.+..++++++-|.++++.||+...
T Consensus 137 ~~~~~~l~~~i~~L~~~l~~le~~~~ 162 (166)
T 3pjs_K 137 KAAEEAYTRTTRALHERFDRLERMLD 162 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456688899999999999887544
No 73
>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1
Probab=46.58 E-value=5.9 Score=29.45 Aligned_cols=34 Identities=9% Similarity=-0.066 Sum_probs=27.3
Q ss_pred HHHHHHHhhcchhHHHHHHHHHhhhhcCCCCCcc
Q 034008 45 LEEELEQLDKTEKASAACNETLRNVEAIPDPLLP 78 (106)
Q Consensus 45 LeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP 78 (106)
|++-|++|+..-+.+.-.+++++|+.+..-.+++
T Consensus 224 l~~~~~~~~~~~~~~~~~~~~~~f~~~~~r~~~~ 257 (270)
T 1j2z_A 224 LRESAKLELEEHANNPFVKEICSFILESSRGVAY 257 (270)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHCSSCBCC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccCCccC
Confidence 6888889988877777889999999986555554
No 74
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=46.21 E-value=19 Score=21.60 Aligned_cols=28 Identities=18% Similarity=0.025 Sum_probs=19.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHh
Q 034008 25 TRGKHRIQAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 25 ~~GkhR~~ael~~LeqEi~fLeeEL~~L 52 (106)
+.|-.|=.-+.+++|+++..++++|+.|
T Consensus 104 ~~~~~~DITe~k~~e~~l~~~~~~l~~l 131 (132)
T 2pr5_A 104 FVGIQNDITKQKEYEKLLEDSLTEITAL 131 (132)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHHHHhc
Confidence 3344444556778888888888888765
No 75
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=46.15 E-value=28 Score=23.08 Aligned_cols=26 Identities=27% Similarity=0.566 Sum_probs=17.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh
Q 034008 27 GKHRIQAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 27 GkhR~~ael~~LeqEi~fLeeEL~~L 52 (106)
|+.++..-|++|++|-.-|+.+++.|
T Consensus 40 G~~KL~~mi~~l~~E~~~l~~ni~~l 65 (78)
T 3iv1_A 40 GHQKLEEMVTRLDQEVAEVDKNIELL 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777666666655544
No 76
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=46.05 E-value=20 Score=26.65 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchh
Q 034008 32 QAELKRLEQETRFLEEELEQLDKTEK 57 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE~~~~ 57 (106)
+++|++|..=+.-|+-||.+||+...
T Consensus 3 ~~~l~~~q~l~kele~eL~eLek~p~ 28 (154)
T 4fz4_A 3 MAKVEEVQKVVKELEKELGELDKVPS 28 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 57799999999999999999999765
No 77
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=46.01 E-value=26 Score=29.81 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCC
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDP 75 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 75 (106)
.||+..=.++.+-+++-++++++-|||+-.|-....|++..+.+..|+
T Consensus 351 ~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~id~vI~iIr~s~~~ 398 (496)
T 2nov_A 351 AHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENK 398 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCH
Confidence 688888899999999999999999999999888889999988877765
No 78
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=45.63 E-value=43 Score=27.50 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCCCccccCCC
Q 034008 29 HRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDPLLPITNGP 83 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~gp 83 (106)
..+.++++.|..+|.-|++++.++|. -..+++..+-..++|-.|+.+..
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ipN~~~~~vP~g~~e 120 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKK------KIDYYLWRLPNITHPSVPVGKDE 120 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHTTSCCCCCTTSCCCSSG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhCCCCCCccCCCCCCC
Confidence 45677778888888888888777763 45778888888889999987543
No 79
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=45.21 E-value=30 Score=22.16 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=16.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHh
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~L 52 (106)
+.|..+.|+.||.++.-|+.+...|
T Consensus 24 ReRK~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 24 RKRKEDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777776655553
No 80
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=44.91 E-value=23 Score=22.51 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 034008 32 QAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE 53 (106)
-.+|..|++-|..||++|+..+
T Consensus 40 E~ev~~L~kKiq~lE~eld~~e 61 (81)
T 1ic2_A 40 EDELVALQKKLKGTEDELDKYS 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777888888888877654
No 81
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=44.83 E-value=18 Score=22.81 Aligned_cols=19 Identities=5% Similarity=0.394 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 034008 35 LKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 35 l~~LeqEi~fLeeEL~~LE 53 (106)
|+.|++++..|++|+++|.
T Consensus 59 I~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6778888888888887775
No 82
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=44.58 E-value=46 Score=28.01 Aligned_cols=56 Identities=20% Similarity=0.247 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCCCccccCCCC-CchhHHh
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDPLLPITNGPL-NPLWDRW 91 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~gp~-n~sWdRW 91 (106)
-+.++++.|..+|.-|++++.++| .-..+++..+-..|+|=.|+.+.-. |.--.+|
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~------~~~~~~l~~iPN~~~~~vP~g~~e~~n~~v~~~ 131 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEAD------KNLRSKINQVGNIVHESVVDSQDEENNELVRTW 131 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTTSCCCCCTTSCCCSCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhCCCCCCccCCCCCCccCCEEEEEe
Confidence 355566666666666666666655 3456788888888999999875532 4433344
No 83
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.17 E-value=28 Score=22.79 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=6.2
Q ss_pred hhhHHHHHHHHHHHH
Q 034008 29 HRIQAELKRLEQETR 43 (106)
Q Consensus 29 hR~~ael~~LeqEi~ 43 (106)
+.++..|+.-..||+
T Consensus 22 ~eLq~~L~~K~eELr 36 (72)
T 3nmd_A 22 RDLQYALQEKIEELR 36 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444443333333
No 84
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=43.31 E-value=20 Score=25.86 Aligned_cols=29 Identities=10% Similarity=0.278 Sum_probs=24.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcch
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQLDKTE 56 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~LE~~~ 56 (106)
---++.+.|++++++.-+|+||+..+-..
T Consensus 43 m~~mmkQAQkmQ~km~k~QeeL~~~eveg 71 (143)
T 1ybx_A 43 INNLVKQAQKMQRDMERVQEELKEKTVEA 71 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCEEEE
Confidence 35678899999999999999999886443
No 85
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=43.23 E-value=30 Score=22.51 Aligned_cols=17 Identities=35% Similarity=0.560 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034008 36 KRLEQETRFLEEELEQL 52 (106)
Q Consensus 36 ~~LeqEi~fLeeEL~~L 52 (106)
..|..+|..|+.|+..|
T Consensus 53 ~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 53 ERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555444
No 86
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=43.20 E-value=24 Score=24.28 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 29 HRIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
-.+..+|..|++|..-|.++++.||.
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888888888887763
No 87
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=43.07 E-value=34 Score=31.78 Aligned_cols=38 Identities=18% Similarity=0.072 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhh
Q 034008 33 AELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVE 70 (106)
Q Consensus 33 ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve 70 (106)
.+++.|.+|..-|++||+.|.++-+..--.+||.+|.+
T Consensus 1127 ee~ekL~~E~~e~~~ei~~L~~~s~~~lw~~DLd~~~~ 1164 (1177)
T 4gfh_A 1127 ERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEV 1164 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999888777888877764
No 88
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=42.82 E-value=24 Score=26.86 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 034008 29 HRIQAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~L 52 (106)
+.+..+|+.|+++|..++.||.++
T Consensus 229 ~~l~~~i~~l~~~l~~~~~~l~~~ 252 (357)
T 3rrk_A 229 ARMKERARLAPEELVGIREEVARL 252 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544
No 89
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=42.75 E-value=21 Score=27.90 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 034008 32 QAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE 53 (106)
++.|+.||.||.-|+.+|+.++
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 442 QKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888887777654
No 90
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=42.70 E-value=53 Score=21.78 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034008 35 LKRLEQETRFLEEELEQ 51 (106)
Q Consensus 35 l~~LeqEi~fLeeEL~~ 51 (106)
-..|..+|..+++|+..
T Consensus 36 N~~Lh~~ie~~~eEi~~ 52 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIAR 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555543
No 91
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=41.92 E-value=22 Score=23.78 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchh
Q 034008 33 AELKRLEQETRFLEEELEQLDKTEK 57 (106)
Q Consensus 33 ael~~LeqEi~fLeeEL~~LE~~~~ 57 (106)
+..+.++++++-|.++++.||+...
T Consensus 111 ~~~~~l~~~~~~l~~~l~~le~~~~ 135 (139)
T 3eff_K 111 AAEEAYTRTTRALHERFDRLERMLD 135 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888899998887554
No 92
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=41.91 E-value=26 Score=22.37 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc
Q 034008 31 IQAELKRLEQETRFLEEELEQLDKT 55 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE~~ 55 (106)
+.++|+.|+.+-.+-|.|++.|.++
T Consensus 23 L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 23 LAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999998887654
No 93
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=41.89 E-value=24 Score=22.81 Aligned_cols=26 Identities=8% Similarity=0.147 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 29 HRIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
.-+...++.|+++|..|+.-++.|+.
T Consensus 77 ~~l~~~~~~l~~~i~~l~~~~~~l~~ 102 (108)
T 2vz4_A 77 AHLRRQHELLSARIGKLQKMAAAVEQ 102 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777766666654
No 94
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=41.78 E-value=31 Score=23.24 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchh
Q 034008 34 ELKRLEQETRFLEEELEQLDKTEK 57 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~LE~~~~ 57 (106)
|-..|..+|..|++|+..|...-.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~ 70 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666655544433
No 95
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=41.43 E-value=31 Score=29.51 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=41.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCC
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDP 75 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 75 (106)
.||+..=..+.+-+++-++++++-|||+-.|-....|++..+.+..|+
T Consensus 375 ~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~id~vI~iIr~s~~~ 422 (514)
T 2inr_A 375 NHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNK 422 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 588888889999999999999999999988887778888887776654
No 96
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=41.21 E-value=28 Score=22.69 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=24.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 034008 27 GKHRIQAELKRLEQETRFLEEELEQLDKTEKASA 60 (106)
Q Consensus 27 GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~ 60 (106)
|.|-..++|+.++.+=.-||+.+..||.-=..|.
T Consensus 1 ~~~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 1 GSHNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888888776544443
No 97
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=41.07 E-value=37 Score=21.96 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 034008 29 HRIQAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~LE 53 (106)
.|...+++.++..|..|+.||.++-
T Consensus 24 ~~~~~~l~~~q~~i~~lE~el~~~r 48 (86)
T 1x8y_A 24 DSLARERDTSRRLLAEKEREMAEMR 48 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888888887763
No 98
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=40.99 E-value=35 Score=30.33 Aligned_cols=48 Identities=13% Similarity=0.137 Sum_probs=42.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCC
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDP 75 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 75 (106)
.||+..=..+.+-+++-++++++-|||+-.|-....||+..+.+..||
T Consensus 558 ~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~iD~vI~iIr~s~~~ 605 (692)
T 2xcs_B 558 EHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTD 605 (692)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHhCCCH
Confidence 588888888999999999999999999988888888999988877776
No 99
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=40.50 E-value=22 Score=23.88 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 034008 29 HRIQAELKRLEQETRFLEEELEQLDKT 55 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~LE~~ 55 (106)
.|-+.++..|+.++..|+.+|+.+..+
T Consensus 12 ~~~~~~~~~l~~~~~~l~~~l~~~~~~ 38 (182)
T 3kqg_A 12 KSDLEKASALNTKIRALQGSLENMSKL 38 (182)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666655443
No 100
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=40.13 E-value=34 Score=21.00 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 034008 29 HRIQAELKRLEQETRFLEEELEQLDKT 55 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~LE~~ 55 (106)
+++...|+.|+..-+.++.|++.|-++
T Consensus 14 ~~L~~kv~~Le~~c~~~eQEieRL~~L 40 (48)
T 3vmx_A 14 IQLATKIQHLEFSCSEKEQEIERLNKL 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 566778888888888888887776543
No 101
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=40.12 E-value=19 Score=24.56 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcch
Q 034008 29 HRIQAELKRLEQETRFLEEELEQLDKTE 56 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~LE~~~ 56 (106)
-.++.+.|++++++.-+|+||+..+-..
T Consensus 11 ~~mmkqaq~mQ~~m~~~QeeL~~~~v~g 38 (112)
T 1j8b_A 11 GGLMKQAQQMQEKMQKMQEEIAQLEVTG 38 (112)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccEEEE
Confidence 3567889999999999999999876443
No 102
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=40.11 E-value=31 Score=20.97 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 034008 32 QAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
...+..|++.|..||..|..|-.
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 34788899999999988888754
No 103
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=39.59 E-value=38 Score=21.54 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 29 HRIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
+-++.+++.|+.|...|+.++++...
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~~~~~~~~ 78 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRTAVHKSKS 78 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45678888888888888888887543
No 104
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=39.59 E-value=16 Score=23.65 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 034008 32 QAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE 53 (106)
.+.|..||-.+.|+++-|++|.
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn 34 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELS 34 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554
No 105
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=39.30 E-value=56 Score=26.39 Aligned_cols=45 Identities=31% Similarity=0.322 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCCCcccc
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDPLLPIT 80 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t 80 (106)
.+.++++.|..+|.-|++++.++| .-..+++..+-..|+|=.|+.
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ipN~~~~~vp~g 112 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEEALREKE------ARLEALLLQVPLPPWPGAPVG 112 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTTCCCCCCTTSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhCCCCCCCCCCCC
Confidence 455666666677777766666665 345677788888888888876
No 106
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=39.07 E-value=50 Score=18.31 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
-|.-||.++.+.|..|-|-|+..|+
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le~~~~ 27 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLEKIEK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3667899999999999877776653
No 107
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=38.90 E-value=28 Score=23.15 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 034008 33 AELKRLEQETRFLEE 47 (106)
Q Consensus 33 ael~~LeqEi~fLee 47 (106)
++|..|++|+.+|.+
T Consensus 57 ~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 57 KKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 108
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=38.70 E-value=37 Score=30.30 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=43.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCC
Q 034008 27 GKHRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDP 75 (106)
Q Consensus 27 GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 75 (106)
=.||+..=..+.+-+++-++++++-|||+-.|-....||+..+-+..||
T Consensus 325 ~~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~iDeVI~iIR~s~~~ 373 (716)
T 1zvu_A 325 LVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP 373 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhcCch
Confidence 3688888899999999999999999999999888889999999888775
No 109
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=38.67 E-value=35 Score=28.80 Aligned_cols=58 Identities=19% Similarity=0.152 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCCCccccCCCCCchhHHhh
Q 034008 29 HRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDPLLPITNGPLNPLWDRWF 92 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~gp~n~sWdRWf 92 (106)
+.+.++++.|..+|.-||++|++++ .-.++++..+-..++|-.|+.....|.--.+|=
T Consensus 176 ~~l~~eV~pLk~eLk~lE~eL~e~e------~eL~~lll~ipN~~~~~vp~g~e~~n~~~~~~g 233 (536)
T 3err_A 176 ADMLKRVEPLRNELQKLEDDAKDNQ------QKLEALLLQVPLPPWPGAPVGGEEANREIKRVG 233 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTTCCCCCCTTSCCSSGGGCEEEEEES
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHH------HHHHHHhcCCCCCCCCCCCCCCCCCCeEEEEeC
Confidence 4566677777777777777666554 456788888999999999977443354444553
No 110
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=38.45 E-value=11 Score=25.40 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 034008 29 HRIQAELKRLEQETRFLEEELEQ 51 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~ 51 (106)
=|+|-+|--||.++.-||.||.+
T Consensus 61 iRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 61 IRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 37788888888888888887764
No 111
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=38.31 E-value=33 Score=24.72 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHH
Q 034008 34 ELKRLEQETRFLEEELEQLDKTEKASA 60 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~LE~~~~aS~ 60 (106)
-++..+.+|..||.||+.++.+-|.+.
T Consensus 103 ~~~~s~~ri~~lekeL~~i~~~~P~~~ 129 (160)
T 2cly_B 103 FLTQSKTRIQEYEKELEKMRNIIPFDQ 129 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHh
Confidence 366677899999999999999998876
No 112
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=38.30 E-value=49 Score=19.81 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 034008 33 AELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 33 ael~~LeqEi~fLeeEL~~LE 53 (106)
.+-..|..+|..|++|+..|.
T Consensus 36 ~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 36 SLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555543
No 113
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=38.27 E-value=49 Score=18.03 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 034008 31 IQAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~L 52 (106)
+.-|+-.|.-|++-|++|.+.|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 4456777788888888887765
No 114
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=37.53 E-value=18 Score=28.91 Aligned_cols=38 Identities=18% Similarity=0.390 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcch----------h--HHHHHHHHHhh
Q 034008 31 IQAELKRLEQETRFLEEELEQLDKTE----------K--ASAACNETLRN 68 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE~~~----------~--aS~~CkEv~~~ 68 (106)
+++.+..|+++|..||..+.++..+- | ..+-|+|+...
T Consensus 33 Lq~~le~L~~KI~~LE~~v~~q~~~~~~~~~~~~~~p~~~~~dC~~i~~~ 82 (323)
T 1lwu_B 33 MKSVLEHLRAKMQRMEEAIKTQKELCSAPCTVNCRVPVVSGMHCEDIYRN 82 (323)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTTSSBCEECCCEESCCBSSHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCHHHHHhc
Confidence 66777888888888888877665431 1 11478888764
No 115
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=37.48 E-value=40 Score=28.94 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=45.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCC
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDP 75 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 75 (106)
.||+..=..+.+-+++-.++.++-|||+-.|-...-||+..+-+..||
T Consensus 326 ~~R~evv~rR~~~~L~ka~~R~hileGl~~a~~~iDevI~iIR~s~~~ 373 (500)
T 3lpx_A 326 LHRREVVTRRTIFELRKARDRAHILEGLSIALANIDPIIEMIKNSNNR 373 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCH
Confidence 688888899999999999999999999999999999999999998887
No 116
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=37.41 E-value=29 Score=24.22 Aligned_cols=23 Identities=48% Similarity=0.589 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 034008 31 IQAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE 53 (106)
.++.++.|+-||.-|..+|+...
T Consensus 65 qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 65 QQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888777655
No 117
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=37.39 E-value=46 Score=21.29 Aligned_cols=24 Identities=13% Similarity=0.302 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 034008 29 HRIQAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~L 52 (106)
+|...+++.++..|..|+.||.++
T Consensus 22 ~~~~~~~~~~q~~i~~lE~eL~~~ 45 (84)
T 1gk4_A 22 ENFAVEAANYQDTIGRLQDEIQNM 45 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777665
No 118
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=37.10 E-value=44 Score=20.48 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=23.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 034008 27 GKHRIQAELKRLEQETRFLEEELEQLDKT 55 (106)
Q Consensus 27 GkhR~~ael~~LeqEi~fLeeEL~~LE~~ 55 (106)
|+-=|.+.|.++|+++..++.-|+.|=.+
T Consensus 11 ~~~S~~~Rl~rVE~qV~~md~KLd~l~~~ 39 (49)
T 3bj4_A 11 GSNTIGARLNRVEDKVTQLDQRLALITDM 39 (49)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55568889999999999999999887544
No 119
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=37.06 E-value=30 Score=25.74 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=20.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 26 RGKHRIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 26 ~GkhR~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
.|+.++.+++..|+++..-|+.+++.|+.
T Consensus 56 ~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 56 IDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777666655
No 120
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=36.88 E-value=18 Score=20.60 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 31 IQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
++-+|+.|++|..-+|+++..++.
T Consensus 9 vKkKiq~lq~q~d~aee~~~~~~~ 32 (37)
T 3azd_A 9 VRRKIRSLQEQNYHLENEVARLKK 32 (37)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788888778877777653
No 121
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=36.83 E-value=38 Score=21.81 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 034008 31 IQAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE 53 (106)
+...++.|+++|.-|+.-++.|+
T Consensus 80 l~~~~~~l~~~i~~l~~~~~~l~ 102 (109)
T 1r8d_A 80 LQSQKEILMKKKQRMDEMIQTID 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555444444443
No 122
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=36.36 E-value=30 Score=22.91 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 034008 35 LKRLEQETRFLEEELEQL 52 (106)
Q Consensus 35 l~~LeqEi~fLeeEL~~L 52 (106)
+..+..+|.+|+.||+.+
T Consensus 21 ~~gv~~~i~~Lk~eL~~m 38 (115)
T 3qfl_A 21 HKGVKKNIEDLGKELESM 38 (115)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHHHH
Confidence 445567777777777655
No 123
>2doh_C Fragment, plasminogen-binding group A streptococcal M-like PAM; lysine-binding site, kringle domains, hydrolase; HET: DIO; 2.30A {Homo sapiens} PDB: 2kj4_B 1i5k_C 2doi_C
Probab=36.35 E-value=37 Score=19.14 Aligned_cols=20 Identities=60% Similarity=0.811 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 034008 32 QAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~L 52 (106)
-|+|++|.+| +..++||+.|
T Consensus 7 ~~eL~rLknE-Rh~~~elerl 26 (30)
T 2doh_C 7 DAELQRLKNE-RHEEAELERL 26 (30)
T ss_dssp HHHHHHHHHH-HHHHHHHHHC
T ss_pred HHHHHHHHHH-HHHHHHHHHH
Confidence 5789999887 4566666544
No 124
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=36.19 E-value=47 Score=26.81 Aligned_cols=47 Identities=32% Similarity=0.549 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCCCccccCC
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDPLLPITNG 82 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~g 82 (106)
.+.++++.|..+|.-|++++.++|. -..+++..+-..++|=.|+.+.
T Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ipN~~~~~vp~g~~ 118 (425)
T 2dq3_A 72 EIQNRVKELKEEIDRLEEELRKVEE------ELKNTLLWIPNLPHPSVPVGED 118 (425)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTSCCCCCTTSCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhCCCCCCCCCCCCCC
Confidence 4567788888888888888877763 3467788888888888887654
No 125
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=36.02 E-value=35 Score=20.63 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034008 36 KRLEQETRFLEEELEQL 52 (106)
Q Consensus 36 ~~LeqEi~fLeeEL~~L 52 (106)
..|.+||+.||.|+..+
T Consensus 30 ~~L~~ei~~lE~ei~~~ 46 (50)
T 2a26_A 30 DALTAEKSKIETEIKNK 46 (50)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45677777777777754
No 126
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.74 E-value=48 Score=21.33 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 034008 32 QAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE 53 (106)
.++++.|+.+|..|++++..++
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~ 91 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELE 91 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554
No 127
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=35.59 E-value=45 Score=22.41 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=16.8
Q ss_pred hhHHHHHHHH----HHHHHHHHHHHHhhcc
Q 034008 30 RIQAELKRLE----QETRFLEEELEQLDKT 55 (106)
Q Consensus 30 R~~ael~~Le----qEi~fLeeEL~~LE~~ 55 (106)
+....|+.|- .||.+-++||+.||..
T Consensus 37 kekEqL~~LKkkl~~el~~h~~ei~~le~~ 66 (84)
T 1gmj_A 37 RAKEQLAALKKHKENEISHHAKEIERLQKE 66 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554 6788888888877653
No 128
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=35.54 E-value=43 Score=22.82 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 31 IQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
++++-+.|++++.-|++.|+.+|.
T Consensus 102 L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 102 LTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666665554
No 129
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.46 E-value=33 Score=28.07 Aligned_cols=26 Identities=31% Similarity=0.633 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcc
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDKT 55 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~~ 55 (106)
|+.++.+.|++++..+++|++.|...
T Consensus 43 ~l~~~~~~l~~~~~~~~~e~~~l~~~ 68 (405)
T 4b4t_J 43 RLEAQRNALNDKVRFIKDELRLLQEP 68 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45555566666667777777666543
No 130
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=35.39 E-value=38 Score=20.95 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 034008 32 QAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
...+..|+..|..||..|.++..
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 34678899999999988887753
No 131
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=35.29 E-value=45 Score=22.72 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 034008 29 HRIQAELKRLEQETRFLEEEL 49 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL 49 (106)
.+++.+++.|++|+..|+.++
T Consensus 35 ~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 35 ERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444
No 132
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=35.26 E-value=27 Score=22.74 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 034008 36 KRLEQETRFLEEELEQLDKT 55 (106)
Q Consensus 36 ~~LeqEi~fLeeEL~~LE~~ 55 (106)
.-||.+|..|+|||..|-+.
T Consensus 66 ~dLE~kvesL~eEl~fLkk~ 85 (86)
T 3swk_A 66 LDLERKVESLQEEIAFLKKL 85 (86)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 35788888888888877554
No 133
>2qup_A BH1478 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Bacillus halodurans}
Probab=34.97 E-value=42 Score=23.64 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=24.0
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHHH
Q 034008 24 DTRGKHRIQAELKRLEQETRFLEEEL 49 (106)
Q Consensus 24 d~~GkhR~~ael~~LeqEi~fLeeEL 49 (106)
|.+|+||...=|+..++++.-|-++|
T Consensus 94 ~r~gr~r~y~iV~~ID~kL~eLt~~l 119 (145)
T 2qup_A 94 NRRGRTKIYKIVKEVDRKLLDLTDAV 119 (145)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeeEEeehhHHhHHHHHHHHHH
Confidence 66899999999999999999999887
No 134
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=34.84 E-value=41 Score=24.81 Aligned_cols=23 Identities=43% Similarity=0.426 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 034008 29 HRIQAELKRLEQETRFLEEELEQ 51 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~ 51 (106)
..++.++..|+++|.-|++||+.
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~e 93 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIAL 93 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666544
No 135
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=34.33 E-value=69 Score=19.78 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 034008 31 IQAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~L 52 (106)
+...++.|+++|.-|+.-++.|
T Consensus 44 L~~~~~~l~~~i~~L~~~~~~L 65 (99)
T 1q08_A 44 VQERLQEVEARIAELQSMQRSL 65 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444443
No 136
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.28 E-value=35 Score=23.18 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcch
Q 034008 32 QAELKRLEQETRFLEEELEQLDKTE 56 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE~~~ 56 (106)
..+|..|.+.|..|+-||+++.++.
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~ 59 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQC 59 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4578888888888888888876654
No 137
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=34.23 E-value=84 Score=21.09 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc
Q 034008 31 IQAELKRLEQETRFLEEELEQLDKT 55 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE~~ 55 (106)
+...|..|+.||..|++|++.|-.+
T Consensus 51 Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888888888777777543
No 138
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=34.21 E-value=44 Score=22.98 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 034008 36 KRLEQETRFLEEELEQLD 53 (106)
Q Consensus 36 ~~LeqEi~fLeeEL~~LE 53 (106)
+.|++.+..|+++++.|+
T Consensus 98 ~~l~~~~~~l~~~i~~L~ 115 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTE 115 (148)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 139
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=34.09 E-value=48 Score=23.36 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcc
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDKT 55 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~~ 55 (106)
++...|.+++++|..|++++++||..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (192)
T 2gkw_A 11 RHDQMLSVHDIRLADMDLRFQVLETA 36 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34456667788888888888888874
No 140
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=33.93 E-value=51 Score=27.95 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=41.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCC
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDP 75 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 75 (106)
.||+..=.++.+-+++-+++.++-|||+-.|-....||+..+.+..|+
T Consensus 337 ~~R~~~~~rR~~~~L~k~~~r~hilegl~~a~~~iD~vI~iIr~s~~~ 384 (470)
T 3ilw_A 337 DHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETV 384 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 688888899999999999999999999999988888888877766553
No 141
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=33.89 E-value=43 Score=22.22 Aligned_cols=24 Identities=46% Similarity=0.584 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 31 IQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
+.++|+.|..|=.-|..||+.||+
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEk 32 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEK 32 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554
No 142
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=33.45 E-value=1e+02 Score=21.40 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=22.8
Q ss_pred CCCcCCCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHh
Q 034008 6 SDSRGLNTQRTQSLTGSGDTRGKHRIQAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 6 ~~s~~~~~~rp~S~~~~~d~~GkhR~~ael~~LeqEi~fLeeEL~~L 52 (106)
+.-+..+++-|+..+ .+.--+|.-..+|+.+..++.-|+.+...+
T Consensus 5 ~~~~~~e~~~~~~~~--~~~~~~~p~~~~I~~I~~eV~~L~~qV~~f 49 (111)
T 1uk5_A 5 SSGAPAEPAAPKSGE--AETPPKHPGVLKVEAILEKVQGLEQAVDSF 49 (111)
T ss_dssp CCCCCCCCCCCCCCS--SSSCCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCCC--CCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555544 344445554555555555555555554444
No 143
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=33.31 E-value=42 Score=22.23 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 034008 33 AELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 33 ael~~LeqEi~fLeeEL~~LE 53 (106)
.+|.-|++-|+.||+||+.++
T Consensus 44 ~Ei~sL~kk~~~lE~eld~~e 64 (101)
T 3u1c_A 44 DDIVQLEKQLRVTEDSRDQVL 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666543
No 144
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=33.06 E-value=53 Score=22.09 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHh
Q 034008 29 HRIQAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~L 52 (106)
-++..+|..-..||.-||++|+.+
T Consensus 47 kkl~~el~~h~~ei~~le~~i~rh 70 (84)
T 1gmj_A 47 KHKENEISHHAKEIERLQKEIERH 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666543
No 145
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=32.96 E-value=46 Score=21.37 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 034008 32 QAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~L 52 (106)
..|.+.++..|..||.||.++
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~ 24 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEM 24 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544
No 146
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=32.95 E-value=58 Score=21.51 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
|+..+-+.|+..|..|++..++|+.
T Consensus 50 ~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 50 RLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555556555555555543
No 147
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=32.92 E-value=40 Score=23.55 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 034008 29 HRIQAELKRLEQETRFLEEELEQLDKT 55 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~LE~~ 55 (106)
-.++.+.-.|+.+|+-|+++|+.|+-.
T Consensus 3 ~~L~~~~~~L~~~i~~l~~~L~~lkqa 29 (122)
T 3viq_A 3 MQLLSRRLKLEKEVRNLQEQLITAETA 29 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788999999999999877654
No 148
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=32.88 E-value=45 Score=22.51 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
-+...++.|+++|..|+.-++.|+.
T Consensus 83 ~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (135)
T 1q06_A 83 RTLEKVAEIERHIEELQSMRDQLLA 107 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665554
No 149
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=32.82 E-value=45 Score=29.92 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=43.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCC
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDP 75 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 75 (106)
.||+..=..+.+-+++-++++++-|||+-.|-....||+..+.+..||
T Consensus 620 ~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~iD~vI~iIr~s~~~ 667 (767)
T 2xkj_E 620 EIRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQP 667 (767)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhccch
Confidence 589888899999999999999999999988888889999999888775
No 150
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=32.18 E-value=55 Score=23.46 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc
Q 034008 31 IQAELKRLEQETRFLEEELEQLDKT 55 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE~~ 55 (106)
++.||+.|++++.-..+|++.|-.-
T Consensus 76 LqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 76 LEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667888888888877777777543
No 151
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=32.18 E-value=35 Score=24.05 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHh
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~L 52 (106)
|-|++.+...|..++..|+-++..|
T Consensus 85 REkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 85 REKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 4466667777777777777666554
No 152
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=32.11 E-value=58 Score=21.64 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 034008 30 RIQAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE 53 (106)
.+-++|+.+=..|..|+.|+++|.
T Consensus 10 qLE~KIq~avdtI~lLqmEieELK 33 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELK 33 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777777764
No 153
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=32.06 E-value=85 Score=21.80 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh--------cchhHHHHHHHHHhh----hhcCCCCC
Q 034008 34 ELKRLEQETRFLEEELEQLD--------KTEKASAACNETLRN----VEAIPDPL 76 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~LE--------~~~~aS~~CkEv~~~----Ves~pDPL 76 (106)
++..|.+|+.-|+..++.|| ++..+-.-|++..+. |....||.
T Consensus 19 ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~~~~e~~~~~~~~~ 73 (106)
T 4e61_A 19 TIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQDLINEGVYKFNDET 73 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchh
Confidence 44445555555555555555 345666789988775 33345554
No 154
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=31.85 E-value=20 Score=27.20 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=28.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhc
Q 034008 25 TRGKHRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEA 71 (106)
Q Consensus 25 ~~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves 71 (106)
+.....+..|.++|.+|+..|+.++.+++-+..--.-.++++.+-..
T Consensus 18 ~~~~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~~~ 64 (255)
T 2j5u_A 18 VVDLKNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLDITDS 64 (255)
T ss_dssp --------CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 33444556677777788877777777777776666667888877665
No 155
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=31.84 E-value=57 Score=20.95 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 034008 34 ELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~LE~ 54 (106)
.+...++++.-|+.+|..|..
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~ 85 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLID 85 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555543
No 156
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=31.83 E-value=48 Score=27.79 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCCCccccCCCCC
Q 034008 31 IQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDPLLPITNGPLN 85 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~gp~n 85 (106)
+.++++.|..+|.-|++++.++| .-..+++..+-..++|=.|+.....|
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~------~~l~~~l~~iPN~~~~~vP~g~e~~n 169 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLE------EQFYLRALRLPNQTHPDVPVGDESQA 169 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTTSCCCCCTTCCCSSGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 44555555555555555555544 34567788888888898888643333
No 157
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=31.76 E-value=72 Score=19.16 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 034008 32 QAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
..+-..|..+|..|++|+..|..
T Consensus 35 ~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 35 KAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666665543
No 158
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=31.75 E-value=46 Score=21.11 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 29 HRIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
.|..-||..|+.-++-|++|+..+++
T Consensus 31 ~~R~DEV~~Le~NLrEL~~ei~~~~~ 56 (59)
T 1z0j_B 31 CGRLDEVEVLTENLRELKHTLAKQKG 56 (59)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566899999999999999988875
No 159
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=31.49 E-value=46 Score=20.26 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=19.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHh
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~L 52 (106)
+-|..-||..|++-++-|+.|++.+
T Consensus 22 ~~rRfdEV~~L~~NL~EL~~E~~~~ 46 (48)
T 3v1a_A 22 AAGRMDEVRTLQENLHQLMHEYFQQ 46 (48)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhcChHHHHHHHHHHHHHHHHHHhh
Confidence 3455678888988888888888754
No 160
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=31.47 E-value=52 Score=22.91 Aligned_cols=23 Identities=43% Similarity=0.551 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 034008 31 IQAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE 53 (106)
++++|....++|.-|.+++..|.
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk 31 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYK 31 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777766666553
No 161
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=31.29 E-value=53 Score=21.85 Aligned_cols=21 Identities=48% Similarity=0.504 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 034008 30 RIQAELKRLEQETRFLEEELE 50 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~ 50 (106)
+++.+|.-=++||+-|+|.++
T Consensus 22 ~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 22 ILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777664
No 162
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=30.72 E-value=16 Score=25.05 Aligned_cols=36 Identities=14% Similarity=0.294 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----------hcchhHHHHHHHHHhh
Q 034008 33 AELKRLEQETRFLEEELEQL-----------DKTEKASAACNETLRN 68 (106)
Q Consensus 33 ael~~LeqEi~fLeeEL~~L-----------E~~~~aS~~CkEv~~~ 68 (106)
+++..++++|-||+|=++-. |+-+++=.||++.++.
T Consensus 33 ~~~~d~e~qI~Flqel~~l~R~iP~~vf~d~e~R~~lL~a~Q~AlD~ 79 (92)
T 1xl3_C 33 FSLPTPEIXVRFYQDLXRMFRLFPLGVFSDEEQRQNLLQMCQNAIDM 79 (92)
T ss_dssp TCCSSHHHHHHHHHHHHHHHHTSCGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHCCHHhcCCHHHHHHHHHHHHHHHHH
Confidence 34566899999999544322 3445556688877664
No 163
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=30.67 E-value=76 Score=19.21 Aligned_cols=16 Identities=38% Similarity=0.364 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 034008 37 RLEQETRFLEEELEQL 52 (106)
Q Consensus 37 ~LeqEi~fLeeEL~~L 52 (106)
.|..+|..|++|+..|
T Consensus 41 ~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 41 ALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 164
>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0
Probab=30.55 E-value=29 Score=25.39 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=22.1
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhhhhcCCCCCc
Q 034008 44 FLEEELEQLDKTEKASAACNETLRNVEAIPDPLL 77 (106)
Q Consensus 44 fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLL 77 (106)
.|+|.|++|+..- .+.--+++++|+++..-.++
T Consensus 226 ~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~r~~~ 258 (266)
T 3r0s_A 226 DLKENAKNLLENQ-ESENVKKMCHFILETKRGIP 258 (266)
T ss_dssp CHHHHHHHHHTTC-CCHHHHHHHHHHHHCSSCCC
T ss_pred cHHHHHHHHHhhc-CCHHHHHHHHHHHhccCCcC
Confidence 4688888887654 44456889999975543433
No 165
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=30.51 E-value=48 Score=23.16 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 31 IQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
+...++.+++++.-|++.+..++|
T Consensus 173 l~~~~~~~~~~~~~l~~~~~~~~~ 196 (203)
T 3qks_A 173 LSELKKTINNRIKEYRDILARTEG 196 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Confidence 344455555555555555555544
No 166
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=30.19 E-value=70 Score=21.67 Aligned_cols=38 Identities=26% Similarity=0.458 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhh
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVE 70 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve 70 (106)
+.|+..++..|++ ||++| +.++++..... -+|+++.+.
T Consensus 68 ~~Rl~~a~~~L~~---~l~~e-~~~~~~ee~~~-Ake~l~~a~ 105 (108)
T 1h7c_A 68 QRRLEAAYLDLQR---ILENE-KDLEEAEEYKE-ARLVLDSVK 105 (108)
T ss_dssp HHHHHHHHHHHHH---HHHHC-GGGTTSHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHhc-ccCCCcHHHHH-HHHHHHHHH
Confidence 4577777777776 34444 44555544433 356665543
No 167
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=30.14 E-value=59 Score=18.38 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=19.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh
Q 034008 27 GKHRIQAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 27 GkhR~~ael~~LeqEi~fLeeEL~~L 52 (106)
|.--+=|.|.+.|++|..+-.-|+.+
T Consensus 4 g~nTIGaRLnRvE~k~t~MD~kL~~i 29 (31)
T 3hfe_A 4 GSNTIGARLNRVEDKVTQLDQRLALI 29 (31)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345578999999999998888765
No 168
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.63 E-value=56 Score=26.57 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 034008 29 HRIQAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~LE 53 (106)
..+..++++|++|+.+|+-|-+.|+
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~ 69 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIK 69 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777766665555443
No 169
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=29.63 E-value=55 Score=23.94 Aligned_cols=34 Identities=12% Similarity=0.251 Sum_probs=26.7
Q ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHHHHhhcch
Q 034008 23 GDTRGKHRIQAELKRLEQETRFLEEELEQLDKTE 56 (106)
Q Consensus 23 ~d~~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~ 56 (106)
|.+-=-+|+..-|..|+..|..++.+|+.|+.+-
T Consensus 376 Ppl~eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k 409 (425)
T 1yf2_A 376 PPLEEQKQIAKILSSVDKSIELKKQKKEKLQRMK 409 (425)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444457888888999999999999998887654
No 170
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=29.61 E-value=71 Score=18.60 Aligned_cols=29 Identities=31% Similarity=0.555 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 034008 31 IQAELKRLEQETRFLEEELEQLDKTEKAS 59 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS 59 (106)
+-+++..|.++-..||.|...|.++-..|
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 34566667777777777777766654443
No 171
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=29.41 E-value=1.3e+02 Score=20.16 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHh
Q 034008 33 AELKRLEQETRFLEEELEQLDKTEKASAACNETLR 67 (106)
Q Consensus 33 ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~ 67 (106)
.++..||.|...|+-|++.|- ..-+++.+|+..
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~--~e~~~~~~e~d~ 80 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLK--QEVSRLARERDA 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 455667777777766666664 233444455543
No 172
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.93 E-value=53 Score=23.08 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHh
Q 034008 40 QETRFLEEELEQL 52 (106)
Q Consensus 40 qEi~fLeeEL~~L 52 (106)
+++.-|++++..|
T Consensus 117 ~~~~~l~~~~~~l 129 (138)
T 3hnw_A 117 SEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 173
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=28.89 E-value=52 Score=25.09 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 034008 35 LKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 35 l~~LeqEi~fLeeEL~~LE 53 (106)
|...++||.-|+++|.+++
T Consensus 36 l~~k~~ei~~L~~ql~sl~ 54 (190)
T 4emc_A 36 LDTKATEIKQLQKQIDSLN 54 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444445555544444
No 174
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=28.64 E-value=61 Score=22.05 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhh
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVE 70 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve 70 (106)
-+...|++|..|++-|+.|+++|..-- +...-++++..+.
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~-a~~~~~~l~~~~~ 68 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVI-ADLWADILMERAE 68 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcE
Confidence 456789999999999999999988643 3333455655443
No 175
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=28.02 E-value=1.1e+02 Score=21.18 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 034008 33 AELKRLEQETRFLEEELEQLDKTEKASAACNET 65 (106)
Q Consensus 33 ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv 65 (106)
..|.+|-+||.-|..||+.+ ...+.+.+-.+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l--~~E~q~~v~ql 45 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENM--KTESQRVVLQL 45 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 46777777777777777776 44444444433
No 176
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=27.33 E-value=54 Score=20.58 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=11.7
Q ss_pred CCCCcchhhhhHHHH
Q 034008 21 GSGDTRGKHRIQAEL 35 (106)
Q Consensus 21 ~~~d~~GkhR~~ael 35 (106)
+.-|.+||||+..+-
T Consensus 37 Sp~Dky~~yR~~~kk 51 (60)
T 2apo_B 37 SLEDRWGKYRRMLKR 51 (60)
T ss_dssp CTTCTTHHHHHHHHH
T ss_pred CCCcchHHHHHHHHH
Confidence 556999999987654
No 177
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.25 E-value=78 Score=21.41 Aligned_cols=25 Identities=16% Similarity=0.453 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
+++++|+-|......||.-|.++|.
T Consensus 47 ~L~~el~~l~~~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 47 RLRAEIDNVKKQCANLQNAIADAEQ 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4555555555555556655555554
No 178
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=27.09 E-value=56 Score=26.32 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 034008 34 ELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~L 52 (106)
++..|+++|..+++|+++|
T Consensus 18 ~~~~l~~~~~~~~~~~~~~ 36 (403)
T 4etp_A 18 KIAALKEKIKDTELGMKEL 36 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 179
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=26.98 E-value=53 Score=26.46 Aligned_cols=20 Identities=15% Similarity=0.400 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 034008 34 ELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~LE 53 (106)
+|..|++++..|++++++++
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~ 30 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTE 30 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 180
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.73 E-value=72 Score=18.77 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 034008 34 ELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~L 52 (106)
+|.+|+.+...|++|-.+|
T Consensus 16 Qi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 16 QILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677777777777776554
No 181
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=26.38 E-value=58 Score=19.84 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhh
Q 034008 35 LKRLEQETRFLEEELEQLDKTEKASAACNETLRNVE 70 (106)
Q Consensus 35 l~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve 70 (106)
+.+||+|+..||.|-+.|.+- .--=|+++.++|
T Consensus 5 vaqlenevaslenenetlkkk---nlhkkdliayle 37 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKK---NLHKKDLIAYLE 37 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHh---cccHHHHHHHHH
Confidence 568899999999876655432 223355555554
No 182
>2knp_A Mcocc-1; disulfide-rich peptides, cystine knot motif, cytotoxic, melanoma cell LINE, non-hemolytic, seeds extract, unknown function; NMR {Momordica cochinchinensis}
Probab=26.25 E-value=17 Score=20.77 Aligned_cols=7 Identities=71% Similarity=2.133 Sum_probs=5.4
Q ss_pred CCccccc
Q 034008 99 RGCRCWI 105 (106)
Q Consensus 99 ~~c~cwi 105 (106)
.+|+||-
T Consensus 15 ggcrcwp 21 (33)
T 2knp_A 15 GGCRCWP 21 (33)
T ss_dssp SSCCEEE
T ss_pred Cceeecc
Confidence 5799993
No 183
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=26.07 E-value=84 Score=21.51 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 034008 30 RIQAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE 53 (106)
-+...++.|+++|..|+.-++.|+
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~ 122 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQ 122 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777766666555554
No 184
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=26.00 E-value=88 Score=21.00 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 034008 31 IQAELKRLEQETRFLEEELEQ 51 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~ 51 (106)
+..++..|.+|+..|.+|+..
T Consensus 53 LE~e~~~L~~e~~~L~~e~~~ 73 (90)
T 2wt7_B 53 LENEKTQLIQQVEQLKQEVSR 73 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 185
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=25.98 E-value=64 Score=23.09 Aligned_cols=26 Identities=8% Similarity=0.158 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcc
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDKT 55 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~~ 55 (106)
-+...++.|+++|..|+.-++.|+..
T Consensus 83 ~l~~~~~~l~~~i~~l~~~~~~l~~~ 108 (278)
T 1r8e_A 83 FYTEQERQIREKLDFLSALEQTISLV 108 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777766666666654
No 186
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=25.96 E-value=66 Score=21.05 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 034008 32 QAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~L 52 (106)
--+|+.||+.+.+||-.|.++
T Consensus 51 n~kL~~lE~~L~iLEAklsSI 71 (73)
T 3pp5_A 51 NEKLTILDRQVDYLEATFKTV 71 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 346788888888888777654
No 187
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=25.95 E-value=1.3e+02 Score=25.15 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=31.5
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCCCccccCCC
Q 034008 32 QAE-LKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDPLLPITNGP 83 (106)
Q Consensus 32 ~ae-l~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~gp 83 (106)
.++ .+.|..+|.-|++++.++| .-..+++..+-..++|-.|+.+..
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~------~~~~~~l~~iPN~~~~~vP~g~~e 155 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLE------EERDKLMLNVGNILHESVPIAQDE 155 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTTCCCCCCTTSCCCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhCCCCCCccCCCCCCc
Confidence 444 5666666666666666555 345678888888889999977644
No 188
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=25.86 E-value=25 Score=23.34 Aligned_cols=16 Identities=6% Similarity=0.023 Sum_probs=6.5
Q ss_pred HHHHHHhhhhcCCCCC
Q 034008 61 ACNETLRNVEAIPDPL 76 (106)
Q Consensus 61 ~CkEv~~~Ves~pDPL 76 (106)
.|+.|...+=+.-|=|
T Consensus 48 ~~~~I~~ILYaTeegf 63 (82)
T 3tq7_B 48 VISGIIGILYATEEGF 63 (82)
T ss_dssp HHHHHHHHHTCCC---
T ss_pred HHHHHHHHHhccccCC
Confidence 4555555544444433
No 189
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=25.55 E-value=54 Score=21.79 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhhcCCCCC
Q 034008 58 ASAACNETLRNVEAIPDPL 76 (106)
Q Consensus 58 aS~~CkEv~~~Ves~pDPL 76 (106)
|..-.++-..-+|..||++
T Consensus 24 A~QKLkdA~~~~e~DPDev 42 (78)
T 2ic6_A 24 TRQKLKDAERAVELDPDDV 42 (78)
T ss_dssp HHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHhcCCCcHH
Confidence 3445677777788888864
No 190
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.44 E-value=87 Score=21.26 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
+++++|+.|......||.-|.++|.
T Consensus 49 ~L~~el~~l~~~~~sLE~~l~e~e~ 73 (131)
T 3tnu_A 49 NLEIELQSQLSMKASLENSLEETKG 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4455555555555555655555554
No 191
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=25.36 E-value=76 Score=27.16 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhH-----HHHHHHHHhhhhcCCCC
Q 034008 33 AELKRLEQETRFLEEELEQLDKTEKA-----SAACNETLRNVEAIPDP 75 (106)
Q Consensus 33 ael~~LeqEi~fLeeEL~~LE~~~~a-----S~~CkEv~~~Ves~pDP 75 (106)
.++..|++|+..|++|++.|+.+=.. ...-+|+.+..+.-.||
T Consensus 454 ~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~yg~~ 501 (514)
T 2inr_A 454 TDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSE 501 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 36788888888888888888877322 33567777777766664
No 192
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.29 E-value=83 Score=20.56 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 034008 38 LEQETRFLEEELEQLDKT 55 (106)
Q Consensus 38 LeqEi~fLeeEL~~LE~~ 55 (106)
|.++|..|+.|+..|-|.
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGq 42 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQ 42 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 445555555555555443
No 193
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=25.24 E-value=9.2 Score=28.88 Aligned_cols=31 Identities=26% Similarity=0.451 Sum_probs=4.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQLDKTEKA 58 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~LE~~~~a 58 (106)
|-.++.++|+|-.|++-|..||.-++....+
T Consensus 156 Ke~l~~~~QRLkdE~rDLk~El~v~~~~~~~ 186 (189)
T 2v71_A 156 KESLLVSVQRLKDEARDLRQELAVRERQQEV 186 (189)
T ss_dssp HHHHHCCC-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4455556666666666666666665554333
No 194
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=25.12 E-value=83 Score=22.54 Aligned_cols=13 Identities=0% Similarity=-0.192 Sum_probs=6.2
Q ss_pred HHHhhhhcCCCCC
Q 034008 64 ETLRNVEAIPDPL 76 (106)
Q Consensus 64 Ev~~~Ves~pDPL 76 (106)
.|-.|.+.+.|=|
T Consensus 67 ~l~~y~e~~r~el 79 (171)
T 2p2u_A 67 GVATFATLNKTEM 79 (171)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHhHHHh
Confidence 3444555554444
No 195
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.03 E-value=70 Score=23.72 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 034008 30 RIQAELKRLEQETRFLEEELE 50 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~ 50 (106)
-++.+|..++.+|.+|++++.
T Consensus 94 aL~kEie~~~~~i~~lE~eil 114 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIE 114 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666544
No 196
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=24.93 E-value=1.2e+02 Score=21.21 Aligned_cols=52 Identities=6% Similarity=-0.142 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCCCccccCCCCCchh
Q 034008 37 RLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDPLLPITNGPLNPLW 88 (106)
Q Consensus 37 ~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~gp~n~sW 88 (106)
.+++-..-|+.=|+.|=.+.+--..|..|.+|...+++-+-|......|-+.
T Consensus 100 ~~e~Rr~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~~D~~~~~~~~~~~~~ 151 (156)
T 2v6v_A 100 ITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFVVLNNGFDREFERDENGSH 151 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHTTSCCSSSSCEEECC------
T ss_pred HHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCCcccccccccCcCCcc
Confidence 4566678888888889898887788999999999999999888887777654
No 197
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.64 E-value=77 Score=23.99 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=27.9
Q ss_pred CCCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 034008 21 GSGDTRGKHRIQAELKRLEQETRFLEEELEQLDKT 55 (106)
Q Consensus 21 ~~~d~~GkhR~~ael~~LeqEi~fLeeEL~~LE~~ 55 (106)
..|+..|.+.....++.|+++|.-|+.+|++++.-
T Consensus 214 ~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~ 248 (357)
T 3rrk_A 214 RFPGAYGAMPLGKAAARMKERARLAPEELVGIREE 248 (357)
T ss_dssp CCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556676667788999999999999999998653
No 198
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=24.29 E-value=1.1e+02 Score=17.80 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 034008 30 RIQAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE 53 (106)
.++.+|..-+.||..|++|=++|-
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 456677777888888888766653
No 199
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=24.28 E-value=72 Score=20.08 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 034008 34 ELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~LE 53 (106)
+=++|+|++.|++.-=++||
T Consensus 27 ~Q~~ldq~Ld~Ie~QQ~ELe 46 (64)
T 3t97_C 27 DQKRLDQELDFILSQQKELE 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455566666554444433
No 200
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=23.93 E-value=1e+02 Score=20.43 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 034008 30 RIQAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE 53 (106)
+...++..++..|..||.||.++-
T Consensus 34 ~~~~e~~~~q~~i~~lE~eL~~~r 57 (95)
T 3mov_A 34 LLAKEKDNSRRMLTDKEREMAEIR 57 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666677777777776653
No 201
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=29.66 E-value=17 Score=28.39 Aligned_cols=46 Identities=15% Similarity=0.191 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCCCccccC
Q 034008 34 ELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDPLLPITN 81 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPLLP~t~ 81 (106)
+|..|.|+|.-++- =+-+.-+..+-.+||+|+..|+.. .|.||...
T Consensus 21 AV~~LSq~I~~a~p-eeYv~lVK~VGl~LR~LL~sVDel-~~~Lp~Sa 66 (215)
T 2l6f_A 21 AVIEMSSKIQPAPP-EEYVPMVKEVGLALRTLLATVDES-LPVLPAST 66 (215)
Confidence 56667777766654 233455667888999999999987 78888443
No 202
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=23.66 E-value=83 Score=23.00 Aligned_cols=36 Identities=14% Similarity=0.357 Sum_probs=29.4
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHHhhcchh
Q 034008 22 SGDTRGKHRIQAELKRLEQETRFLEEELEQLDKTEK 57 (106)
Q Consensus 22 ~~d~~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~~ 57 (106)
.|.+-=-+||.+-|..|+.-|..++..++.|+.+..
T Consensus 165 lPpl~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k~ 200 (425)
T 1yf2_A 165 LPPLEEQKQIAKILTKIDEGIEIIEKSINKLERIKK 200 (425)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666788999999999999999999888876554
No 203
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=23.60 E-value=1.4e+02 Score=18.84 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh--------cchhHHHHHHH
Q 034008 34 ELKRLEQETRFLEEELEQLD--------KTEKASAACNE 64 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~LE--------~~~~aS~~CkE 64 (106)
.++.|..|..-+.+.++.|| ++..+-.-|++
T Consensus 10 kmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~ 48 (75)
T 3mtu_A 10 KMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQE 48 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34456667777777776666 34444445554
No 204
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.45 E-value=87 Score=21.39 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhh
Q 034008 34 ELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVE 70 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ve 70 (106)
.++.|+++|.-|+.-++.|+ ..-..|++.+...+
T Consensus 89 ~~~~l~~~i~~L~~~~~~L~---~~i~~~~~~~~~~~ 122 (142)
T 3gp4_A 89 QRIELKNRIDVMQEALDRLD---FKIDNYDTHLIPAQ 122 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34444444444444333333 22334555444433
No 205
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=23.33 E-value=98 Score=20.40 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 034008 30 RIQAELKRLEQETRFLEEEL 49 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL 49 (106)
++..+|..|++|=.-|..||
T Consensus 22 ~L~~eL~~lEke~~~l~~el 41 (96)
T 3q8t_A 22 RLIQELEDVEKNRKVVAENL 41 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 44555555544433333333
No 206
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=23.18 E-value=20 Score=23.78 Aligned_cols=18 Identities=50% Similarity=0.641 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034008 34 ELKRLEQETRFLEEELEQ 51 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~ 51 (106)
|++.||.|+..||.||+-
T Consensus 14 elqalekelaqlekelqa 31 (80)
T 2lq4_p 14 ELQALEKELAQLEKELQA 31 (80)
T ss_dssp TTHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666666543
No 207
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.18 E-value=66 Score=23.87 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 034008 34 ELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~LE~ 54 (106)
+++.|.+||.+++.++..+|.
T Consensus 91 E~~aL~kEie~~~~~i~~lE~ 111 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANR 111 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666655555553
No 208
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=22.96 E-value=62 Score=28.64 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=23.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 25 TRGKHRIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 25 ~~GkhR~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
+-|.--..+++++|+.|+..|+.||+.+++
T Consensus 792 ~~~~~d~~~~~~rl~k~~~~~~~~~~~~~~ 821 (862)
T 1gax_A 792 LEGLLDVEEWRRRQEKRLKELLALAERSQR 821 (862)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445678899999999999999988876
No 209
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=22.86 E-value=88 Score=20.02 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 034008 33 AELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 33 ael~~LeqEi~fLeeEL~~LE 53 (106)
|+=.+|+|.+.-|-+||+.+-
T Consensus 32 AKWaKL~Rk~DKl~~ele~l~ 52 (65)
T 3sja_C 32 AKWTKNNRKLDSLDKEINNLK 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888877764
No 210
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=22.62 E-value=71 Score=20.61 Aligned_cols=17 Identities=35% Similarity=0.548 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 034008 37 RLEQETRFLEEELEQLD 53 (106)
Q Consensus 37 ~LeqEi~fLeeEL~~LE 53 (106)
.|.+|++.||.+|..|.
T Consensus 38 ~ls~Elr~mQ~~lq~LQ 54 (63)
T 2w6a_A 38 SLSDELRKLQREIHKLQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 46778888888877764
No 211
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=22.57 E-value=46 Score=24.20 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCC
Q 034008 29 HRIQAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDP 75 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDP 75 (106)
||...=..+..-+.+-.++-+.=|||+-.|-...-||++.+-+.+||
T Consensus 16 hR~eVVtRRt~f~L~Ka~~R~HILEGL~iAl~nIDeVI~iIR~S~~~ 62 (156)
T 3ku8_A 16 PRGSHMTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTP 62 (156)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCH
Confidence 66666666777777788888888999999999999999999888887
No 212
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=22.43 E-value=69 Score=23.99 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034008 34 ELKRLEQETRFLEEELE 50 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~ 50 (106)
.++.|+++|.-||+||.
T Consensus 136 tV~kLqkeiD~LEDeL~ 152 (175)
T 3mud_A 136 TTAKNEKSIDDLEEKVA 152 (175)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57788889999998874
No 213
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=22.27 E-value=84 Score=22.03 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034008 33 AELKRLEQETRFLEEELE 50 (106)
Q Consensus 33 ael~~LeqEi~fLeeEL~ 50 (106)
.+++.++.||-.|..||.
T Consensus 82 ~~l~~~~kE~~~lK~el~ 99 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELI 99 (138)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 214
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=22.20 E-value=1e+02 Score=21.03 Aligned_cols=27 Identities=11% Similarity=0.250 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHH
Q 034008 34 ELKRLEQETRFLEEELEQLDKTEKASA 60 (106)
Q Consensus 34 el~~LeqEi~fLeeEL~~LE~~~~aS~ 60 (106)
+=.+|+|.+.-|-+||+.+-+.-.+++
T Consensus 50 KWaKL~Rk~DKl~~ele~l~~~l~~~k 76 (93)
T 3sjb_C 50 KWTKNNRKLDSLDKEINNLKDEIQSEN 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888887765544443
No 215
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=22.11 E-value=1.1e+02 Score=21.71 Aligned_cols=27 Identities=19% Similarity=0.448 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
++.+..++..|+++|.-|+.|-+.++.
T Consensus 16 ~~~L~~~~r~Ldr~~~kle~~ekk~~~ 42 (179)
T 2gd5_A 16 SLKIRKEMRVVDRQIRDIQREEEKVKR 42 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677788888888777766643
No 216
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=21.66 E-value=91 Score=24.88 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 29 HRIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 29 hR~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
+.++..|+.|+.+|..|++.+.+|+.
T Consensus 21 ~~L~~~l~~~~~ki~~L~~~i~~l~~ 46 (319)
T 1fzc_C 21 RYLQEIYNSNNQKIVNLKEKVAQLEA 46 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777776666653
No 217
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.65 E-value=67 Score=22.59 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=32.0
Q ss_pred Ccchhhhh-HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhhcCCCCC
Q 034008 24 DTRGKHRI-QAELKRLEQETRFLEEELEQLDKTEKASAACNETLRNVEAIPDPL 76 (106)
Q Consensus 24 d~~GkhR~-~ael~~LeqEi~fLeeEL~~LE~~~~aS~~CkEv~~~Ves~pDPL 76 (106)
-|-|..|+ ++.|+.|+.||.-.|..|- .|..-.|+-..-+|..||++
T Consensus 25 ~~~~~~~~tM~~ieeLQ~Ei~~~E~QL~------iArQKLkdAe~~~E~DPDev 72 (107)
T 2k48_A 25 YFQGIDPFTMSTLQELQENITAHEQQLV------TARQKLKDAEKAVEVDPDDV 72 (107)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHH
T ss_pred hhhccccccHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCCcHH
Confidence 35676665 5777777777777766553 34446777778888888864
No 218
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.54 E-value=82 Score=23.98 Aligned_cols=25 Identities=24% Similarity=0.217 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Q 034008 30 RIQAELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 30 R~~ael~~LeqEi~fLeeEL~~LE~ 54 (106)
.++.|+..|.+++...++|++.|..
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ 48 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQK 48 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888887544
No 219
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=21.23 E-value=97 Score=26.36 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc--hh---HHHHHHHHHhhhhcCCCC
Q 034008 33 AELKRLEQETRFLEEELEQLDKT--EK---ASAACNETLRNVEAIPDP 75 (106)
Q Consensus 33 ael~~LeqEi~fLeeEL~~LE~~--~~---aS~~CkEv~~~Ves~pDP 75 (106)
.++..|++|+..|++|++.|+.+ .+ -...-+|+.+..+.-.||
T Consensus 430 ~e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~y~~~ 477 (496)
T 2nov_A 430 TDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP 477 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 46778888888888888888876 22 234667777777766665
No 220
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=21.09 E-value=1.4e+02 Score=19.50 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=22.9
Q ss_pred cchhhhhH-HHHHHHHHHHHHHHHHHHHhhc
Q 034008 25 TRGKHRIQ-AELKRLEQETRFLEEELEQLDK 54 (106)
Q Consensus 25 ~~GkhR~~-ael~~LeqEi~fLeeEL~~LE~ 54 (106)
+.++|++. -.|..|||+=.|||.+|..++.
T Consensus 33 L~~mR~ivldRlA~lEqdE~~LE~~l~~i~~ 63 (72)
T 2xu6_A 33 LRQKKEKLLGKIANIEQNQLMLEDNLKQIDD 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34555554 4688899999999999988875
No 221
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.84 E-value=1.1e+02 Score=19.51 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034008 35 LKRLEQETRFLEEELEQ 51 (106)
Q Consensus 35 l~~LeqEi~fLeeEL~~ 51 (106)
|.+|.++++.|.+.|++
T Consensus 44 Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 44 GARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444433333
No 222
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=20.73 E-value=1.1e+02 Score=21.14 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 034008 32 QAELKRLEQETRFLEEELEQLDKT 55 (106)
Q Consensus 32 ~ael~~LeqEi~fLeeEL~~LE~~ 55 (106)
+..++.++++|..|++.++. ||+
T Consensus 53 ~~~~~~~~~~i~~l~~~~~~-~g~ 75 (171)
T 2rbd_A 53 DEAIQAMQDENHQLEELLRS-NGV 75 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHHHHHHHHHHHH-CCC
Confidence 33456666666666666643 443
No 223
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=20.50 E-value=1e+02 Score=23.01 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=24.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHhhcch
Q 034008 25 TRGKHRIQAELKRLEQETRFLEEELEQLDKTE 56 (106)
Q Consensus 25 ~~GkhR~~ael~~LeqEi~fLeeEL~~LE~~~ 56 (106)
.-=-.++...|..++.+|..++.+++.|+.+-
T Consensus 354 l~eQ~~I~~~l~~id~~i~~~~~~i~~L~~lk 385 (406)
T 1ydx_A 354 FQLQRKAGKIVFLLDQKLDQYKKELSSLTVIR 385 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33346777888889999999999888887554
No 224
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=20.43 E-value=1.4e+02 Score=19.84 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=20.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhh
Q 034008 28 KHRIQAELKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 28 khR~~ael~~LeqEi~fLeeEL~~LE 53 (106)
|--+.|.|..|..|-..|++||+++.
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~ 57 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34467788888888899998888765
No 225
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=20.37 E-value=68 Score=20.17 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=11.8
Q ss_pred CCCCcchhhhhHHHH
Q 034008 21 GSGDTRGKHRIQAEL 35 (106)
Q Consensus 21 ~~~d~~GkhR~~ael 35 (106)
+.-|.+|+||+..+-
T Consensus 36 SP~Dky~~yR~~lKk 50 (60)
T 2aus_D 36 SPEDPYGEYRRRLKR 50 (60)
T ss_dssp CSCCTTHHHHHHHHH
T ss_pred CCCCchHHHHHHHHH
Confidence 556999999987654
No 226
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=20.16 E-value=1.1e+02 Score=19.22 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 034008 35 LKRLEQETRFLEEELEQLD 53 (106)
Q Consensus 35 l~~LeqEi~fLeeEL~~LE 53 (106)
.+.|+.++.-|+-.++.|.
T Consensus 27 ~~~i~~~l~~L~~~v~~L~ 45 (103)
T 4i0x_B 27 KEFVTENLDQLESRAQKLV 45 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444443
No 227
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=20.15 E-value=1.1e+02 Score=19.62 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 034008 31 IQAELKRLEQETRFLEEELEQLDKTEKAS 59 (106)
Q Consensus 31 ~~ael~~LeqEi~fLeeEL~~LE~~~~aS 59 (106)
...+|+.+..+|.-|+..+++|..++..+
T Consensus 10 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~ 38 (127)
T 1ez3_A 10 FFEQVEEIRGFIDKIAENVEEVKRKHSAI 38 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777766543
No 228
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=20.11 E-value=1e+02 Score=20.00 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=22.2
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHHh
Q 034008 22 SGDTRGKHRIQAELKRLEQETRFLEEELEQL 52 (106)
Q Consensus 22 ~~d~~GkhR~~ael~~LeqEi~fLeeEL~~L 52 (106)
..|++.- +-..+..|+++|+-..+.|++-
T Consensus 67 ~~d~yaA--ID~a~dkLerQLrK~K~k~~~~ 95 (101)
T 3v26_X 67 GQDMYAA--IDGLIDKLARQLTKHKDKLKQH 95 (101)
T ss_dssp CSSSSHH--HHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHH--HHHHHHHHHHHHHHHHHHHhhh
Confidence 4455542 5568899999999999999874
Done!