BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034010
         (106 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IJI|A Chain A, Structure Of Dipeptide Epimerase From Bacteroides
           Thetaiotaomicron Complexed With L-Ala-D-Glu;
           Nonproductive Substrate Binding.
 pdb|3IJI|B Chain B, Structure Of Dipeptide Epimerase From Bacteroides
           Thetaiotaomicron Complexed With L-Ala-D-Glu;
           Nonproductive Substrate Binding.
 pdb|3IJL|A Chain A, Structure Of Dipeptide Epimerase From Bacteroides
           Thetaiotaomicron Complexed With L-Pro-D-Glu;
           Nonproductive Substrate Binding.
 pdb|3IJL|B Chain B, Structure Of Dipeptide Epimerase From Bacteroides
           Thetaiotaomicron Complexed With L-Pro-D-Glu;
           Nonproductive Substrate Binding.
 pdb|3IJQ|A Chain A, Structure Of Dipeptide Epimerase From Bacteroides
           Thetaiotaomicron Complexed With L-Ala-D-Glu; Productive
           Substrate Binding.
 pdb|3IJQ|B Chain B, Structure Of Dipeptide Epimerase From Bacteroides
           Thetaiotaomicron Complexed With L-Ala-D-Glu; Productive
           Substrate Binding
          Length = 338

 Score = 32.0 bits (71), Expect = 0.079,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 13/74 (17%)

Query: 31  KAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLRAYDLKQKWK 90
           +A+T +     N + V LGR  DK+MI  + ++  +               A D  Q WK
Sbjct: 139 RAKTKECAGLFNILKVKLGRDNDKEMIETIRSVTDLPI-------------AVDANQGWK 185

Query: 91  EGNFILEKFKMLKE 104
           +  + L+    LKE
Sbjct: 186 DRQYALDMIHWLKE 199


>pdb|1GUL|A Chain A, Human Glutathione Transferase A4-4 Complex With
          Iodobenzyl Glutathione
 pdb|1GUL|B Chain B, Human Glutathione Transferase A4-4 Complex With
          Iodobenzyl Glutathione
 pdb|1GUL|C Chain C, Human Glutathione Transferase A4-4 Complex With
          Iodobenzyl Glutathione
 pdb|1GUL|D Chain D, Human Glutathione Transferase A4-4 Complex With
          Iodobenzyl Glutathione
 pdb|1GUL|E Chain E, Human Glutathione Transferase A4-4 Complex With
          Iodobenzyl Glutathione
 pdb|1GUL|F Chain F, Human Glutathione Transferase A4-4 Complex With
          Iodobenzyl Glutathione
 pdb|1GUL|G Chain G, Human Glutathione Transferase A4-4 Complex With
          Iodobenzyl Glutathione
 pdb|1GUL|H Chain H, Human Glutathione Transferase A4-4 Complex With
          Iodobenzyl Glutathione
 pdb|1GUM|A Chain A, Human Glutathione Transferase A4-4 Without Ligands
 pdb|1GUM|B Chain B, Human Glutathione Transferase A4-4 Without Ligands
 pdb|1GUM|C Chain C, Human Glutathione Transferase A4-4 Without Ligands
 pdb|1GUM|D Chain D, Human Glutathione Transferase A4-4 Without Ligands
 pdb|1GUM|E Chain E, Human Glutathione Transferase A4-4 Without Ligands
 pdb|1GUM|F Chain F, Human Glutathione Transferase A4-4 Without Ligands
 pdb|1GUM|G Chain G, Human Glutathione Transferase A4-4 Without Ligands
 pdb|1GUM|H Chain H, Human Glutathione Transferase A4-4 Without Ligands
 pdb|3IK7|A Chain A, Human Glutathione Transferase A4-4 With Gsdhn
 pdb|3IK7|B Chain B, Human Glutathione Transferase A4-4 With Gsdhn
 pdb|3IK7|C Chain C, Human Glutathione Transferase A4-4 With Gsdhn
 pdb|3IK7|D Chain D, Human Glutathione Transferase A4-4 With Gsdhn
          Length = 222

 Score = 25.8 bits (55), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 1  MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQT 34
          M E DG      R+ L+ +A  H+L  K  K +T
Sbjct: 57 MVEIDGMKLVQTRSILHYIADKHNLFGKNLKERT 90


>pdb|2CHU|A Chain A, Ceue In Complex With Mecam
 pdb|2CHU|B Chain B, Ceue In Complex With Mecam
          Length = 296

 Score = 25.4 bits (54), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 22  HHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAK 65
           H   I+  F  +    Y+F    NV+LG KE  Q I     +AK
Sbjct: 213 HGKSINSEFILEKNPDYIFVVDRNVILGNKERAQGILDNALVAK 256


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,301,574
Number of Sequences: 62578
Number of extensions: 110041
Number of successful extensions: 238
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 6
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)