BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034012
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQR 64
++FK+F+ +S FS K +QK++ F++YD D +G +S ++ +VL+ + G+ + D Q
Sbjct: 69 VDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQL 128
Query: 65 EQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGLKMEVEVPVD 106
+Q++ + +A D ++ +F V G GL + ++ VD
Sbjct: 129 QQIVDKTIINADKDGDGRISFEEFCAVVG--GLDIHKKMVVD 168
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 17 FSAKASMQQK--VQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKD 74
F + +QQ VQ + ++D+D NG+V F + +E + F +EQ L F+
Sbjct: 42 FMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGV----SQFSVKGDKEQKLRFAFRI 97
Query: 75 AGYTRDSYLTLGDFIKVF 92
+D Y++ G+ +V
Sbjct: 98 YDMDKDGYISNGELFQVL 115
>pdb|3LL8|B Chain B, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|D Chain D, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 155
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQR 64
++FK+F+ +S FS K +QK++ F++YD D +G +S ++ +VL+ + G+ + D Q
Sbjct: 55 VDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQL 114
Query: 65 EQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGLKMEVEVPVD 106
+Q++ + +A D ++ +F V G GL + ++ VD
Sbjct: 115 QQIVDKTIINADKDGDGRISFEEFCAVVG--GLDIHKKMVVD 154
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 17 FSAKASMQQK--VQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKD 74
F + +QQ VQ + ++D+D NG+V F + +E + F +EQ L F+
Sbjct: 28 FMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGV----SQFSVKGDKEQKLRFAFRI 83
Query: 75 AGYTRDSYLTLGDFIKVF 92
+D Y++ G+ +V
Sbjct: 84 YDMDKDGYISNGELFQVL 101
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQR 64
++FK+F+ +S FS K +QK++ F++YD D +G +S ++ +VL+ + G+ + D Q
Sbjct: 70 VDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQL 129
Query: 65 EQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGLKMEVEVPVD 106
+Q++ + +A D ++ +F V G GL + ++ VD
Sbjct: 130 QQIVDKTIINADKDGDGRISFEEFCAVVG--GLDIHKKMVVD 169
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 17 FSAKASMQQK--VQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKD 74
F + +QQ VQ + ++D+D NG+V F + +E + F +EQ L F+
Sbjct: 43 FMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGV----SQFSVKGDKEQKLRFAFRI 98
Query: 75 AGYTRDSYLTLGDFIKVF 92
+D Y++ G+ +V
Sbjct: 99 YDMDKDGYISNGELFQVL 116
>pdb|2P6B|B Chain B, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|D Chain D, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 156
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQR 64
++FK+F+ +S FS K +QK++ F++YD D +G +S ++ +VL+ + G+ + D Q
Sbjct: 56 VDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQL 115
Query: 65 EQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGLKMEVEVPVD 106
+Q++ + +A D ++ +F V G GL + ++ VD
Sbjct: 116 QQIVDKTIINADKDGDGRISFEEFCAVVG--GLDIHKKMVVD 155
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 17 FSAKASMQQK--VQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKD 74
F + +QQ VQ + ++D+D NG+V F + +E + F +EQ L F+
Sbjct: 29 FMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGV----SQFSVKGDKEQKLRFAFRI 84
Query: 75 AGYTRDSYLTLGDFIKVF 92
+D Y++ G+ +V
Sbjct: 85 YDMDKDGYISNGELFQVL 102
>pdb|2L4H|A Chain A, The Solution Structure Of Calcium Bound Cib1
pdb|2L4I|A Chain A, The Solution Structure Of Magnesium Bound Cib1
pdb|2LM5|A Chain A, Solution Structure Of Ca2+-Cib1 In Complex With The
Cytoplasmic Domain Of The Integrin Aiib Subunit
Length = 214
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG----SF 58
D L+F+DF+ LSVFS A+ K F+++D D +G ++ D+ ++ L+G +
Sbjct: 107 DSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTR 166
Query: 59 MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 95
+S + +Q++ + +++ RD + L +F V S
Sbjct: 167 LSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRS 203
>pdb|1DGU|A Chain A, Homology-Based Model Of Calcium-Saturated Cib (Calcium-And
Integrin-Binding Protein)
pdb|1DGV|A Chain A, Homology-Based Model Of Apo Cib (Calcium-And Integrin-
Binding Protein)
pdb|1XO5|A Chain A, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1XO5|B Chain B, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1Y1A|A Chain A, Crystal Structure Of Calcium And Integrin Binding Protein
pdb|1Y1A|B Chain B, Crystal Structure Of Calcium And Integrin Binding Protein
Length = 183
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 4/98 (4%)
Query: 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG----SF 58
D L+F+DF+ LSVFS A+ K F+++D D +G ++ D+ ++ L+G +
Sbjct: 76 DSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTR 135
Query: 59 MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSG 96
+S + +Q++ + +++ RD + L +F V S
Sbjct: 136 LSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSP 173
>pdb|2CT9|A Chain A, The Crystal Structure Of Calcineurin B Homologous Proein 1
(Chp1)
pdb|2CT9|B Chain B, The Crystal Structure Of Calcineurin B Homologous Proein 1
(Chp1)
Length = 208
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDS 81
S K+ F++YD D + K+S +++L+VLR + G +SDEQ + + ++A DS
Sbjct: 110 SRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDS 169
Query: 82 YLTLGDFIKVF 92
++ +F+KV
Sbjct: 170 AISFTEFVKVL 180
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 55/93 (59%), Gaps = 8/93 (8%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLR---DLSGSFM-- 59
++F++F+ LSV +++ ++QK++ F +YD D NG +S ++LE+++ + S M
Sbjct: 80 IDFREFIIALSV-TSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKM 138
Query: 60 -SDEQREQVLTQ-VFKDAGYTRDSYLTLGDFIK 90
DE + T+ +F+ RD L+L +FI+
Sbjct: 139 PEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIR 171
>pdb|2E30|A Chain A, Solution Structure Of The Cytoplasmic Region Of Na+H+
Exchanger 1 Complexed With Essential Cofactor
Calcineurin B Homologous Protein 1
Length = 195
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 3 DGLNFKDFVAFLSVFSAKA---------------SMQQKVQLIFKVYDSDCNGKVSFNDI 47
D +NF+ F+ L+ F S K+ F++YD D + K+S +++
Sbjct: 76 DQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDEKISRDEL 135
Query: 48 LEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92
L+VLR + G +SDEQ + + ++A DS ++ +F+KV
Sbjct: 136 LQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180
>pdb|2BEC|A Chain A, Crystal Structure Of Chp2 In Complex With Its Binding
Region In Nhe1 And Insights Into The Mechanism Of Ph
Regulation
Length = 202
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDS 81
S + K+ F++YD D +GK+S +++L+VLR + G +++EQ E + + ++A D
Sbjct: 111 SRRNKLHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDG 170
Query: 82 YLTLGDFIKVFGNSGLKMEVE 102
++ +F K KM+VE
Sbjct: 171 AVSFVEFTKSLE----KMDVE 187
>pdb|1M39|A Chain A, Solution Structure Of The C-Terminal Fragment (F86-I165)
Of The Human Centrin 2 In Calcium Saturated Form
Length = 89
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQR 64
+NF DF+ ++ ++ ++++ FK++D D GK+SF ++ V ++L G ++DE+
Sbjct: 1 MNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKEL-GENLTDEEL 59
Query: 65 EQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 97
++++ + +D D ++ +F+++ + L
Sbjct: 60 QEMIDEADRDG----DGEVSEQEFLRIMKKTSL 88
>pdb|2GGZ|A Chain A, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
pdb|2GGZ|B Chain B, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
Length = 211
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
Query: 7 FKDFVAFLSVFS--AKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQR 64
F DF+ F++ + + M+QK++ FK+YD+D NG + N++L++ ++ ++ +Q
Sbjct: 73 FVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMF--MAVQALNGQQT 130
Query: 65 ---EQVLTQVFKDAGYTRDSYLTLGDFI 89
E+ + VF D LTL +FI
Sbjct: 131 LSPEEFINLVFHKIDINNDGELTLEEFI 158
>pdb|2OBH|A Chain A, Centrin-Xpc Peptide
pdb|2OBH|B Chain B, Centrin-Xpc Peptide
Length = 143
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 52/88 (59%), Gaps = 5/88 (5%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQR 64
+NF DF+ ++ ++ ++++ FK++D D GK+SF ++ V ++L G ++DE+
Sbjct: 59 MNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKEL-GENLTDEEL 117
Query: 65 EQVLTQVFKDAGYTRDSYLTLGDFIKVF 92
++++ + +D D ++ +F+++
Sbjct: 118 QEMIDEADRDG----DGEVSEQEFLRIM 141
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 3 DGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFM 59
DG DF FL + +AK ++++ F+++D D GK+SF ++ V ++L G M
Sbjct: 56 DGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKEL-GENM 114
Query: 60 SDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 97
+DE+ ++++ + +D D + +F ++ + L
Sbjct: 115 TDEELQEMIDEADRDG----DGEVNEEEFFRIMKKTSL 148
>pdb|2I94|A Chain A, Nmr Structure Of Recoverin Bound To Rhodopsin Kinase
Length = 202
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 3 DG-LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVL 51
DG L+FK++V L + SA QK++ F +YD D NG +S N++LE++
Sbjct: 78 DGTLDFKEYVIALHMTSA-GKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 126
>pdb|2HET|A Chain A, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|B Chain B, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|C Chain C, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|D Chain D, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
Length = 189
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 3 DG-LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVL 51
DG L+FK++V L + SA QK++ F +YD D NG +S N++LE++
Sbjct: 77 DGTLDFKEYVIALHMTSA-GKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 125
>pdb|1OMR|A Chain A, Non-Myristoylated Wild-Type Bovine Recoverin With Calcium
Bound To Ef- Hand 3
pdb|1REC|A Chain A, Three-Dimensional Structure Of Recoverin, A Calcium Sensor
In Vision
pdb|1IKU|A Chain A, Myristoylated Recoverin In The Calcium-Free State, Nmr, 22
Structures
Length = 201
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 3 DG-LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVL 51
DG L+FK++V L + SA QK++ F +YD D NG +S N++LE++
Sbjct: 77 DGTLDFKEYVIALHMTSA-GKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 125
>pdb|1JSA|A Chain A, Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
Length = 201
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 3 DG-LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVL 51
DG L+FK++V L + SA QK++ F +YD D NG +S N++LE++
Sbjct: 77 DGTLDFKEYVIALHMTSA-GKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 125
>pdb|2GGM|A Chain A, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
pdb|2GGM|B Chain B, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
Length = 172
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 6 NFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQRE 65
NF DF+ + ++ ++++ FK++D D GK+SF ++ V ++L G ++DE+ +
Sbjct: 85 NFGDFLTVXTQKXSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKEL-GENLTDEELQ 143
Query: 66 QVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 97
+ + + +D D ++ +F+++ + L
Sbjct: 144 EXIDEADRDG----DGEVSEQEFLRIXKKTSL 171
>pdb|2D8N|A Chain A, Crystal Structure Of Human Recoverin At 2.2 A Resolution
Length = 207
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 2 VDG-LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMS 60
+DG L+FK++V L +A QK++ F +YD D NG +S N++LE++ +
Sbjct: 84 LDGTLDFKEYVIALHXTTA-GKTNQKLEWAFSLYDVDGNGTISKNEVLEIVXAIFKXITP 142
Query: 61 DEQR---------EQVLTQVFKDAGYTRDSYLTLGDFIK 90
++ + E+ +++K G D LT +FI+
Sbjct: 143 EDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIE 181
>pdb|1OMV|A Chain A, Non-Myristoylated Bovine Recoverin (E85q Mutant) With
Calcium Bound To Ef-Hand 3
Length = 201
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 3 DG-LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVL 51
DG L+FK +V L + SA QK++ F +YD D NG +S N++LE++
Sbjct: 77 DGTLDFKQYVIALHMTSA-GKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 125
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 201
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 3 DG-LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVL 51
DG L+FK +V L + SA QK++ F +YD D NG +S N++LE++
Sbjct: 77 DGTLDFKQYVIALHMTSA-GKTNQKLEWAFSLYDVDGNGTISKNEVLEIV 125
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 8/94 (8%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG +F FLS+ + K +++++ FKV+D D NG +S +++ V+ +L G
Sbjct: 57 ADGNGTIEFDEFLSLMAKKVKDTDAEEELKEAFKVFDKDQNGYISASELRHVMINL-GEK 115
Query: 59 MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92
++DE+ EQ++ K+A D + +F+K+
Sbjct: 116 LTDEEVEQMI----KEADLDGDGQVNYEEFVKMM 145
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 83
++++Q + D+D NG + F++ L ++ + D E+ L + FK ++ Y+
Sbjct: 45 EEELQDMISEVDADGNGTIEFDEFLSLM----AKKVKDTDAEEELKEAFKVFDKDQNGYI 100
Query: 84 TLGDFIKVFGNSGLKM 99
+ + V N G K+
Sbjct: 101 SASELRHVMINLGEKL 116
>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
Angstroms Resolution
Length = 148
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 2 VDGLNFKDFVAFLSVFSAKASMQ-QKVQLI--FKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FLS+ + K Q + +LI FKV+D D NG +S ++ V+ +L
Sbjct: 57 ADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKL 116
Query: 59 MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92
DE + ++ ++A D ++ +F+++
Sbjct: 117 TDDE-----VDEMIREADIDGDGHINYEEFVRMM 145
>pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound
Calmodulin
pdb|1N0Y|A Chain A, Crystal Structure Of Pb-Bound Calmodulin
pdb|1N0Y|B Chain B, Crystal Structure Of Pb-Bound Calmodulin
pdb|1OSA|A Chain A, Crystal Structure Of Recombinant Paramecium Tetraurelia
Calmodulin At 1.68 Angstroms Resolution
Length = 148
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 2 VDGLNFKDFVAFLSVFSAKASMQ-QKVQLI--FKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FLS+ + K Q + +LI FKV+D D NG +S ++ V+ +L
Sbjct: 57 ADGNGTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKL 116
Query: 59 MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92
DE + ++ ++A D ++ +F+++
Sbjct: 117 TDDE-----VDEMIREADIDGDGHINYEEFVRMM 145
>pdb|1XFU|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFV|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFY|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 58 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 116
Query: 59 MSDEQREQVLTQV 71
++DE+ +Q++ +
Sbjct: 117 LTDEEVDQMIREA 129
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1 With
Calcium Bound
Length = 198
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDE-- 62
++F ++VA LS+ K + QK++ FK+YD D NG + ++L +++ + +E
Sbjct: 69 IDFMEYVAALSLV-LKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAM 127
Query: 63 QREQVLTQVFKDAGYTRDSYLTLGDFIK 90
E+ VF D L+L +F++
Sbjct: 128 TAEEFTNMVFDKIDINGDGELSLEEFME 155
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/67 (20%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQR 64
++F +F+ ++ + +++++ F+V+D D NG +S ++ V+ +L G ++DE+
Sbjct: 364 IDFPEFLTMMARWMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEKLTDEEV 422
Query: 65 EQVLTQV 71
++++ +
Sbjct: 423 DEMIREA 429
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 19 AKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYT 78
+ + ++Q + D+D NG + F + L ++ +M D E+ + + F+
Sbjct: 341 GQNPTEAELQDMINEVDADGNGTIDFPEFLTMM----ARWMKDTDSEEEIREAFRVFDKD 396
Query: 79 RDSYLTLGDFIKVFGNSGLKM 99
+ Y++ + V N G K+
Sbjct: 397 GNGYISAAELRHVMTNLGEKL 417
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 358 ADGNGTIDFPEFLTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 416
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 417 LTDEEVDEMIREA 429
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 359 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 417
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 418 LTDEEVDEMIREA 430
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 358 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 416
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 417 LTDEEVDEMIREA 429
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 358 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 416
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 417 LTDEEVDEMIREA 429
>pdb|1PRW|A Chain A, Crystal Structure Of Bovine Brain Ca++ Calmodulin In A
Compact Form
Length = 149
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 58 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEX 116
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 117 LTDEEVDEMIREA 129
>pdb|1UP5|A Chain A, Chicken Calmodulin
pdb|1UP5|B Chain B, Chicken Calmodulin
Length = 148
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 57 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEX 115
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 116 LTDEEVDEMIREA 128
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 321 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 379
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 380 LTDEEVDEMIREA 392
>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
Length = 415
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 324 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 382
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 383 LTDEEVDEMIREA 395
>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12)
pdb|3O78|B Chain B, The Structure Of Ca2+ Sensor (Case-12)
Length = 415
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 324 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 382
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 383 LTDEEVDEMIREA 395
>pdb|1DMO|A Chain A, Calmodulin, Nmr, 30 Structures
pdb|3CLN|A Chain A, Structure Of Calmodulin Refined At 2.2 Angstroms
Resolution
Length = 148
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 57 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 115
Query: 59 MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92
++DE+ + ++ ++A D + +F+++
Sbjct: 116 LTDEE----VDEMIREANIDGDGQVNYEEFVQMM 145
>pdb|3SG3|A Chain A, Crystal Structure Of Gcamp3-D380y
Length = 449
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 358 ADGDGTIDFPEFLTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 416
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 417 LTDEEVDEMIREA 429
>pdb|1RFJ|A Chain A, Crystal Structure Of Potato Calmodulin Pcm6
Length = 149
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 58 ADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEK 116
Query: 59 MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92
++DE+ + ++ ++A D + +F+KV
Sbjct: 117 LTDEE----VDEMIREADVDGDGQINYDEFVKVM 146
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 83
+ ++Q + D+D NG + F + L +L M D E+ L + F+ ++ ++
Sbjct: 46 EAELQDMINEVDADGNGTIDFPEFL----NLMARKMKDTDSEEELKEAFRVFDKDQNGFI 101
Query: 84 TLGDFIKVFGNSGLKM 99
+ + V N G K+
Sbjct: 102 SAAELRHVMTNLGEKL 117
>pdb|3SG4|A Chain A, Crystal Structure Of Gcamp3-D380y, Lp(Linker 2)
Length = 448
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 357 ADGDGTIDFPEFLTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 415
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 416 LTDEEVDEMIREA 428
>pdb|3SG5|A Chain A, Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linker 1),
Lp(Linker 2)
Length = 448
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 357 ADGDGTIDFPEFLTMMARKMKYTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 415
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 416 LTDEEVDEMIREA 428
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K ++K++ F+V+D D NG +S ++ V+ +L G
Sbjct: 57 ADGNGTIDFPEFLNLMARKMKDTDSEEKLKEAFRVFDKDGNGFISAAELRHVMTNL-GEK 115
Query: 59 MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92
++DE+ + ++ ++A D + +F++V
Sbjct: 116 LTDEE----VDEMIREADVDGDGQVNYEEFVQVM 145
>pdb|3SG7|A Chain A, Crystal Structure Of Gcamp3-Kf(Linker 1)
Length = 448
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 357 ADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 415
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 416 LTDEEVDEMIREA 428
>pdb|1Y0V|H Chain H, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|I Chain I, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|J Chain J, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|K Chain K, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|L Chain L, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|M Chain M, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 146
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 55 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 113
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 114 LTDEEVDEMIREA 126
>pdb|1K93|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
Length = 144
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 53 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 111
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 112 LTDEEVDEMIREA 124
>pdb|3EWT|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
pdb|3EWV|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
Length = 154
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 63 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 121
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 122 LTDEEVDEMIREA 134
>pdb|1CM1|A Chain A, Motions Of Calmodulin-Single-Conformer Refinement
pdb|1CM4|A Chain A, Motions Of Calmodulin-four-conformer Refinement
pdb|1CKK|A Chain A, CalmodulinRAT CA2+CALMODULIN DEPENDENT PROTEIN KINASE
Fragment
pdb|1CFF|A Chain A, Nmr Solution Structure Of A Complex Of Calmodulin With A
Binding Peptide Of The Ca2+-Pump
pdb|1QIV|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd), 1:2
Complex
pdb|1QIW|A Chain A, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1QIW|B Chain B, Calmodulin Complexed With
N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1G4Y|R Chain R, 1.60 A Crystal Structure Of The Gating Domain From Small
Conductance Potassium Channel Complexed With
Calcium-Calmodulin
pdb|1K90|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1IWQ|A Chain A, Crystal Structure Of Marcks Calmodulin Binding Domain
Peptide Complexed With Ca2+CALMODULIN
pdb|1NWD|A Chain A, Solution Structure Of Ca2+CALMODULIN BOUND TO THE C-
Terminal Domain Of Petunia Glutamate Decarboxylase
pdb|1L7Z|A Chain A, Crystal Structure Of Ca2+/calmodulin Complexed With
Myristoylated Cap-23/nap-22 Peptide
pdb|1S26|D Chain D, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|E Chain E, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|F Chain F, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1SK6|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1QX5|D Chain D, Crystal Structure Of Apocalmodulin
pdb|1QX5|I Chain I, Crystal Structure Of Apocalmodulin
pdb|1QX5|B Chain B, Crystal Structure Of Apocalmodulin
pdb|1QX5|J Chain J, Crystal Structure Of Apocalmodulin
pdb|1QX5|K Chain K, Crystal Structure Of Apocalmodulin
pdb|1QX5|T Chain T, Crystal Structure Of Apocalmodulin
pdb|1QX5|R Chain R, Crystal Structure Of Apocalmodulin
pdb|1QX5|Y Chain Y, Crystal Structure Of Apocalmodulin
pdb|1XA5|A Chain A, Structure Of Calmodulin In Complex With Kar-2, A Bis-Indol
Alkaloid
pdb|1SY9|A Chain A, Structure Of Calmodulin Complexed With A Fragment Of The
Olfactory Cng Channel
pdb|2F3Y|A Chain A, CalmodulinIQ DOMAIN COMPLEX
pdb|2F3Z|A Chain A, CalmodulinIQ-Aa Domain Complex
pdb|1X02|A Chain A, Solution Structure Of Stereo Array Isotope Labeled (Sail)
Calmodulin
pdb|2DFS|B Chain B, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|C Chain C, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|D Chain D, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|E Chain E, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|F Chain F, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|G Chain G, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|N Chain N, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|O Chain O, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|P Chain P, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|Q Chain Q, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|R Chain R, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|S Chain S, 3-D Structure Of Myosin-V Inhibited State
pdb|1YR5|A Chain A, 1.7-A Structure Of Calmodulin Bound To A Peptide From Dap
Kinase
pdb|2FOT|A Chain A, Crystal Structure Of The Complex Between Calmodulin And
Alphaii-Spectrin
pdb|2BCX|A Chain A, Crystal Structure Of Calmodulin In Complex With A
Ryanodine Receptor Peptide
pdb|1A29|A Chain A, Calmodulin Complexed With Trifluoperazine (1:2 Complex)
pdb|1CFC|A Chain A, Calcium-Free Calmodulin
pdb|1CFD|A Chain A, Calcium-Free Calmodulin
pdb|1CLL|A Chain A, Calmodulin Structure Refined At 1.7 Angstroms Resolution
pdb|1CTR|A Chain A, Drug Binding By Calmodulin: Crystal Structure Of A
Calmodulin-Trifluoperazine Complex
pdb|1LIN|A Chain A, Calmodulin Complexed With Trifluoperazine (1:4 Complex)
pdb|1MUX|A Chain A, Solution Nmr Structure Of CalmodulinW-7 Complex: The Basis
Of Diversity In Molecular Recognition, 30 Structures
pdb|2HQW|A Chain A, Crystal Structure Of Ca2+CALMODULIN BOUND TO NMDA RECEPTOR
NR1C1 Peptide
pdb|2O5G|A Chain A, Calmodulin-Smooth Muscle Light Chain Kinase Peptide
Complex
pdb|2O60|A Chain A, Calmodulin Bound To Peptide From Neuronal Nitric Oxide
Synthase
pdb|3BXK|A Chain A, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXK|C Chain C, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1)
Iq Domain And Ca2+calmodulin Complex
pdb|3BXL|A Chain A, Crystal Structure Of The R-Type Calcium Channel (Cav2.3)
Iq Domain And Ca2+calmodulin Complex
pdb|2K0E|A Chain A, A Coupled Equilibrium Shift Mechanism In Calmodulin-
Mediated Signal Transduction
pdb|2K0F|A Chain A, Calmodulin Complexed With Calmodulin-Binding Peptide From
Smooth Muscle Myosin Light Chain Kinase
pdb|3DVE|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain Complex
pdb|3DVJ|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain (Without
Cloning Artifact, Hm To Tv) Complex
pdb|3DVK|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.3 Iq Domain Complex
pdb|3DVM|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.1 Iq Domain Complex
pdb|2JZI|A Chain A, Structure Of Calmodulin Complexed With The Calmodulin
Binding Domain Of Calcineurin
pdb|3BYA|A Chain A, Structure Of A Calmodulin Complex
pdb|3G43|A Chain A, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|B Chain B, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|C Chain C, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|D Chain D, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|2KNE|A Chain A, Calmodulin Wraps Around Its Binding Domain In The Plasma
Membrane Ca2+ Pump Anchored By A Novel 18-1 Motif
pdb|2KDU|A Chain A, Structural Basis Of The Munc13-1CA2+-Calmodulin
Interaction: A Novel 1-26 Calmodulin Binding Motif With
A Bipartite Binding Mode
pdb|2X0G|B Chain B, X-ray Structure Of A Dap-kinase Calmodulin Complex
pdb|3GOF|A Chain A, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3GOF|B Chain B, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3IF7|A Chain A, Structure Of Calmodulin Complexed With Its First
Endogenous Inhibitor, Sphingosylphosphorylcholine
pdb|2L53|A Chain A, Solution Nmr Structure Of Apo-Calmodulin In Complex With
The Iq Motif Of Human Cardiac Sodium Channel Nav1.5
pdb|2L7L|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
Calmodulin Kinase I
pdb|2LL6|A Chain A, Solution Nmr Structure Of Cam Bound To Inos Cam Binding
Domain Peptide
pdb|2LL7|A Chain A, Solution Nmr Structure Of Cam Bound To The Enos Cam
Binding Domain Peptide
pdb|4EHQ|A Chain A, Crystal Structure Of Calmodulin Binding Domain Of Orai1 In
Complex With Ca2+CALMODULIN DISPLAYS A UNIQUE BINDING
MODE
Length = 148
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 57 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 115
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 116 LTDEEVDEMIREA 128
>pdb|1CDM|A Chain A, Modulation Of Calmodulin Plasticity In Molecular
Recognition On The Basis Of X-Ray Structures
Length = 144
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 54 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 112
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 113 LTDEEVDEMIREA 125
>pdb|4GOW|D Chain D, Crystal Structure Of Ca2+CAM:KV7.4 (KCNQ4) B HELIX COMPLEX
Length = 144
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 55 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 113
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 114 LTDEEVDEMIREA 126
>pdb|4AQR|A Chain A, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
pdb|4AQR|B Chain B, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
Length = 149
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 58 ADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEK 116
Query: 59 MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92
++DE+ + ++ ++A D + +F+KV
Sbjct: 117 LTDEE----VDEMIREADVDGDGQINYEEFVKVM 146
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 83
+ ++Q + D+D NG + F + L +L M D E+ L + F+ ++ ++
Sbjct: 46 EAELQDMINEVDADGNGTIDFPEFL----NLMARKMKDTDSEEELKEAFRVFDKDQNGFI 101
Query: 84 TLGDFIKVFGNSGLKM 99
+ + V N G K+
Sbjct: 102 SAAELRHVMTNLGEKL 117
>pdb|1IQ5|A Chain A, CalmodulinNEMATODE CA2+CALMODULIN DEPENDENT KINASE KINASE
Fragment
pdb|1LVC|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|2BKI|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|2BKI|D Chain D, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|1WRZ|A Chain A, Calmodulin Complexed With A Peptide From A Human
Death-Associated Protein Kinase
pdb|2V01|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Pb
pdb|2V02|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Ba
pdb|2R28|A Chain A, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2R28|B Chain B, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2W73|A Chain A, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|B Chain B, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|E Chain E, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|2W73|F Chain F, High-Resolution Structure Of The Complex Between
Calmodulin And A Peptide From Calcineurin A
pdb|3HR4|B Chain B, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|D Chain D, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|F Chain F, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|H Chain H, Human Inos Reductase And Calmodulin Complex
pdb|3OXQ|A Chain A, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|B Chain B, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|C Chain C, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|D Chain D, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|2Y4V|A Chain A, Crystal Structure Of Human Calmodulin In Complex With A
Dap Kinase-1 Mutant (W305y) Peptide
pdb|3SJQ|A Chain A, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|3SJQ|B Chain B, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|4DCK|B Chain B, Crystal Structure Of The C-Terminus Of Voltage-Gated
Sodium Channel In Complex With Fgf13 And Cam
pdb|3SUI|A Chain A, Crystal Structure Of Ca2+-Calmodulin In Complex With A
Trpv1 C- Terminal Peptide
pdb|4G27|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Phenylurea
pdb|4G28|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Ebio-1
Length = 149
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 58 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 116
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 117 LTDEEVDEMIREA 129
>pdb|2YGG|B Chain B, Complex Of Cambr And Cam
Length = 150
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 58 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 116
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 117 LTDEEVDEMIREA 129
>pdb|2VAY|A Chain A, Calmodulin Complexed With Cav1.1 Iq Peptide
pdb|2LGF|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
L-Selectin
Length = 146
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 55 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 113
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 114 LTDEEVDEMIREA 126
>pdb|2WEL|D Chain D, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 150
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 59 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 117
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 118 LTDEEVDEMIREA 130
>pdb|2IX7|A Chain A, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
pdb|2IX7|B Chain B, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 145
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 56 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 114
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 115 LTDEEVDEMIREA 127
>pdb|2BE6|A Chain A, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|B Chain B, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|C Chain C, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|1ZUZ|A Chain A, Calmodulin In Complex With A Mutant Peptide From Human
Drp-1 Kinase
Length = 150
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 58 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 116
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 117 LTDEEVDEMIREA 129
>pdb|1CDL|A Chain A, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|B Chain B, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|C Chain C, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|D Chain D, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1PK0|D Chain D, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|E Chain E, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|F Chain F, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|3GP2|A Chain A, Calmodulin Bound To Peptide From Calmodulin Kinase Ii
(Camkii)
Length = 147
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 57 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 115
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 116 LTDEEVDEMIREA 128
>pdb|4DJC|A Chain A, 1.35 A Crystal Structure Of The Nav1.5 Diii-Iv-CaCAM
COMPLEX
Length = 152
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 61 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 119
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 120 LTDEEVDEMIREA 132
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 52/95 (54%), Gaps = 10/95 (10%)
Query: 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLR---DLSGS--- 57
++F+DF+ LS+ + ++Q+K+ F +YD + +G ++ ++L++++ D+ G
Sbjct: 118 AVSFEDFIKGLSIL-LRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTY 176
Query: 58 --FMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90
D R+ V T F+ +D +T+ +FI+
Sbjct: 177 PVLKEDAPRQHVET-FFQKMDKNKDGVVTIDEFIE 210
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQR 64
+N + F S F + +F +D+D NG VSF D ++ L S +
Sbjct: 82 VNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGL-----SILLRGTV 136
Query: 65 EQVLTQVFKDAGYTRDSYLT 84
++ L F +D Y+T
Sbjct: 137 QEKLNWAFNLYDINKDGYIT 156
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVL 51
+ F +F+ LSV +++ ++ +K++ FK+YD D +G ++ N++L+++
Sbjct: 80 IEFSEFIQALSV-TSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIV 125
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 29 LIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGY-TRDSYLTLGD 87
+F V+D + +G++ F++ ++ L S + ++ R + GY TR+ L + D
Sbjct: 67 FVFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITRNEMLDIVD 126
Query: 88 FI-KVFGNSGLKMEVEVP 104
I ++ GN+ VE+P
Sbjct: 127 AIYQMVGNT-----VELP 139
>pdb|2K0J|A Chain A, Solution Structure Of Cam Complexed To Drp1p
pdb|2K61|A Chain A, Solution Structure Of Cam Complexed To Dapk Peptide
Length = 148
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 57 ADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 115
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 116 LTDEEVDEMIREA 128
>pdb|2F2O|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2O|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
Length = 179
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 58 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEK 116
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 117 LTDEEVDEMIREA 129
>pdb|1AHR|A Chain A, Calmodulin Mutant With A Two Residue Deletion In The
Central Helix
Length = 146
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 2 VDGLNFKDFVAFLSVFSAK-ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMS 60
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G ++
Sbjct: 57 ADGNGTIDFPEFLTMMARKMKDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL-GEKLT 115
Query: 61 DEQREQVLTQV 71
DE+ ++++ +
Sbjct: 116 DEEVDEMIREA 126
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 3 DGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFM 59
DG DF FL + + K +++++ F+V+D D NG VS ++ V+ L G +
Sbjct: 58 DGNGTVDFPEFLGMMARKMKDTDNEEEIREAFRVFDKDGNGFVSAAELRHVMTRL-GEKL 116
Query: 60 SDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92
SDE+ ++++ D D + +F++V
Sbjct: 117 SDEEVDEMIRAADTDG----DGQVNYEEFVRVL 145
>pdb|2BKH|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
pdb|2VAS|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|3GN4|B Chain B, Myosin Lever Arm
pdb|3GN4|D Chain D, Myosin Lever Arm
pdb|3GN4|F Chain F, Myosin Lever Arm
pdb|3GN4|H Chain H, Myosin Lever Arm
pdb|3L9I|C Chain C, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
pdb|2X51|B Chain B, M6 Delta Insert1
pdb|4ANJ|B Chain B, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
pdb|4DBP|C Chain C, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
pdb|4DBQ|B Chain B, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 149
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 58 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL-GEK 116
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 117 LTDEEVDEMIREA 129
>pdb|1OOJ|A Chain A, Structural Genomics Of Caenorhabditis Elegans : Calmodulin
Length = 149
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 58 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL-GEK 116
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 117 LTDEEVDEMIREA 129
>pdb|2BBM|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|2BBN|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex
By Multidimensional Nmr
pdb|1MXE|A Chain A, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|1MXE|B Chain B, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|4CLN|A Chain A, Structure Of A Recombinant Calmodulin From Drosophila
Melanogaster Refined At 2.2-Angstroms Resolution
Length = 148
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 57 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL-GEK 115
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 116 LTDEEVDEMIREA 128
>pdb|2LV6|A Chain A, The Complex Between Ca-calmodulin And Skeletal Muscle
Myosin Light Chain Kinase From Combination Of Nmr And
Aqueous And Contrast-matched Saxs Data
Length = 148
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 57 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL-GEK 115
Query: 59 MSDEQREQVLTQV 71
++DE+ ++++ +
Sbjct: 116 LTDEEVDEMIREA 128
>pdb|1DEG|A Chain A, The Linker Of Des-Glu84 Calmodulin Is Bent As Seen In The
Crystal Structure
Length = 142
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 2 VDGLNFKDFVAFLSVFSAKA--SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFM 59
DG DF FL++ + K + ++++ F+V+D D NG +S ++ V+ +L G +
Sbjct: 53 ADGNGTIDFPEFLTMMARKMKDTDSEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEKL 111
Query: 60 SDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92
+DE+ + ++ ++A D + +F+++
Sbjct: 112 TDEE----VDEMIREANIDGDGQVNYEEFVQMM 140
>pdb|2VB6|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 149
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 58 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL-GEK 116
Query: 59 MSDEQREQVLTQ 70
++DE+ ++++ +
Sbjct: 117 LTDEEVDEMIRE 128
>pdb|1QTX|A Chain A, The 1.65 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 57 ADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDGNGFISAAELRHVMTNL-GEK 115
Query: 59 MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92
++DE+ + ++ ++A D + +F++V
Sbjct: 116 LTDEE----VDEMIREADVDGDGQVNYEEFVQVM 145
>pdb|1QS7|A Chain A, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
pdb|1QS7|C Chain C, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 145
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L G
Sbjct: 54 ADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDGNGFISAAELRHVMTNL-GEK 112
Query: 59 MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92
++DE+ + ++ ++A D + +F++V
Sbjct: 113 LTDEE----VDEMIREADVDGDGQVNYEEFVQVM 142
>pdb|2A4J|A Chain A, Solution Structure Of The C-Terminal Domain (T94-Y172)
Of The Human Centrin 2 In Complex With A 17 Residues
Peptide (P1-Xpc) From Xeroderma Pigmentosum Group C
Protein
pdb|2K2I|A Chain A, Nmr Solution Structure Of The C-Terminal Domain
(T94-Y172) Of The Human Centrin 2 In Complex With A
Repeat Sequence Of Human Sfi1 (R641-T660)
Length = 79
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 31 FKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90
FK++D D GK+SF ++ V ++L G ++DE+ ++++ + +D D ++ +F++
Sbjct: 17 FKLFDDDETGKISFKNLKRVAKEL-GENLTDEELQEMIDEADRDG----DGEVSEQEFLR 71
Query: 91 VFGNSGL 97
+ + L
Sbjct: 72 IMKKTSL 78
>pdb|2ROB|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 C-Terminal Domain
Length = 70
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 83
+++++ FKV+D D NG +S +++ V+ +L G ++DE+ EQ++ K+A D +
Sbjct: 3 EEELKEAFKVFDKDQNGYISASELRHVMINL-GEKLTDEEVEQMI----KEADLDGDGQV 57
Query: 84 TLGDFIKVF 92
+F+K+
Sbjct: 58 NYEEFVKMM 66
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
Length = 204
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 52/103 (50%), Gaps = 14/103 (13%)
Query: 2 VDGLNFKDFVAFLSVFSA--KASMQQKVQLIFKVYDSDCNGKVSFNDILEV------LRD 53
+G N DF+ +++ + + +++ K++ FK+YD D NG + ++L++ L+
Sbjct: 70 TNGDNTIDFLEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKK 129
Query: 54 LSGSFMSDEQR------EQVLTQVFKDAGYTRDSYLTLGDFIK 90
+ EQ+ E+V+ ++F D L+L +F++
Sbjct: 130 ACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVE 172
>pdb|2KN2|A Chain A, Solution Structure Of The C-Terminal Domain Of Soybean
Calmodulin Isoform 4 Fused With The Calmodulin-Binding
Domain Of Ntmkp1
Length = 92
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 83
+++++ FKV+D D NG +S +++ V+ +L G ++DE+ EQ++ K+A D +
Sbjct: 8 EEELKEAFKVFDKDQNGYISASELRHVMINL-GEKLTDEEVEQMI----KEADLDGDGQV 62
Query: 84 TLGDFIKVF 92
+F+K+
Sbjct: 63 NYEEFVKMM 71
>pdb|1XFX|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL+ + K +++++ F+V+D D NG +S ++ V +L G
Sbjct: 58 ADGNGTIDFPEFLTXXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNL-GEK 116
Query: 59 MSDEQREQVLTQV 71
++DE+ +Q + +
Sbjct: 117 LTDEEVDQXIREA 129
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey
Skeletal Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 3 DGLNFKDFVAFLSVF------SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG 56
DG DF FL + AK +++++ F+++D + +G + ++ E+LR +G
Sbjct: 68 DGSGTIDFEEFLVMMVRQMKEDAKGKSEEELEDCFRIFDKNADGFIDIEELGEILR-ATG 126
Query: 57 SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92
+++E E ++ KD+ D + +F+K+
Sbjct: 127 EHVTEEDIEDLM----KDSDKNNDGRIDFDEFLKMM 158
>pdb|1K9U|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
pdb|1K9U|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
Length = 78
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82
M ++ IFK +D++ +GK+S +++ + LR L GS +DE ++++ ++ D D +
Sbjct: 1 MADDMERIFKRFDTNGDGKISLSELTDALRTL-GSTSADEV-QRMMAEIDTDG----DGF 54
Query: 83 LTLGDFIK-VFGNSGLKMEV 101
+ +FI N GL +V
Sbjct: 55 IDFNEFISFCNANPGLMKDV 74
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 32.3 bits (72), Expect = 0.062, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 3 DGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFM 59
DG DF FL + + K +++++ F+V+D D NG +S ++ V+ +L G +
Sbjct: 350 DGDGTIDFPEFLIMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEKL 408
Query: 60 SDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91
+DE+ ++++ ++A D + +F+++
Sbjct: 409 TDEEVDEMI----READIDGDGQVNYEEFVQM 436
>pdb|1Y6W|A Chain A, Trapped Intermediate Of Calmodulin
Length = 148
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQR 64
+NF +F+ + +++++ F+V+D D NG +S ++ V +L G ++DE+
Sbjct: 63 INFPEFLTXXARCXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNL-GEKLTDEEV 121
Query: 65 EQVLTQV 71
++ + +
Sbjct: 122 DEXIREA 128
>pdb|2RRT|A Chain A, Solution Structure Of Magnesium-Bound Form Of Calmodulin
C-Domain E104dE140D MUTANT
Length = 72
Score = 32.0 bits (71), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 83
+++++ F+V+D D NG +S D+ V+ +L G ++DE+ + ++ ++A D +
Sbjct: 6 EEEIREAFRVFDKDGNGYISAADLRHVMTNL-GEKLTDEE----VDEMIREADIDGDGQV 60
Query: 84 TLGDFIKVF 92
DF+++
Sbjct: 61 NYEDFVQMM 69
>pdb|1NIW|A Chain A, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|C Chain C, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|E Chain E, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|G Chain G, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1QX7|I Chain I, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|R Chain R, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|A Chain A, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|B Chain B, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|M Chain M, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
Length = 148
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
DG DF FL+ + K +++++ F+V+D D NG +S ++ V +L G
Sbjct: 57 ADGNGTIDFPEFLTXXARKXKDTDSEEEIREAFRVFDKDGNGYISAAELRHVXTNL-GEK 115
Query: 59 MSDEQREQVLTQV 71
++DE+ ++ + +
Sbjct: 116 LTDEEVDEXIREA 128
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 159
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 3 DGLNFKDFVAFLSVF------SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG 56
DG DF FL + AK ++++ F+++D + +G + ++ E+LR +G
Sbjct: 65 DGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILR-ATG 123
Query: 57 SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92
+++E E ++ KD+ D + +F+K+
Sbjct: 124 EHVTEEDIEDLM----KDSDKNNDGRIDFDEFLKMM 155
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 3 DGLNFKDFVAFLSVF------SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG 56
DG DF FL + AK ++++ F+++D + +G + ++ E+LR +G
Sbjct: 68 DGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILR-ATG 126
Query: 57 SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92
+++E E ++ KD+ D + +F+K+
Sbjct: 127 EHVTEEDIEDLM----KDSDKNNDGRIDFDEFLKMM 158
>pdb|2EHB|A Chain A, The Structure Of The C-Terminal Domain Of The Protein
Kinase Atsos2 Bound To The Calcium Sensor Atsos3
Length = 207
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL---SGSFMSD 61
+ F +FV L VF A + +KV+ FK+YD G + ++ E++ L S +S+
Sbjct: 91 IEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSE 150
Query: 62 EQREQVLTQVFKDAGYTRDSYLTLGDF 88
+ E ++ + F A D + + ++
Sbjct: 151 DMIEVMVDKAFVQADRKNDGKIDIDEW 177
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 3 DGLNFKDFVAFLSVF------SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG 56
DG DF FL + AK ++++ F+++D + +G + ++ E+LR +G
Sbjct: 68 DGSGTIDFEEFLVMMVRQMKEDAKGKSEEELADCFRIFDKNADGFIDIEELGEILR-ATG 126
Query: 57 SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92
+++E E ++ KD+ D + +F+K+
Sbjct: 127 EHVTEEDIEDLM----KDSDKNNDGRIDFDEFLKMM 158
>pdb|2ZFD|A Chain A, The Crystal Structure Of Plant Specific Calcium Binding
Protein Atcbl2 In Complex With The Regulatory Domain Of
Atcipk14
Length = 226
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILE-VLRDL--SGSFMSD 61
L F++F LSVF A + K+ F++YD G + ++ + V+ L SG + D
Sbjct: 102 LGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKD 161
Query: 62 EQREQVLTQVFKDAGYTRD 80
E ++ + F++A D
Sbjct: 162 TVIEDIIDKTFEEADTKHD 180
>pdb|1V1F|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) And Manganese(Ii) Ions
pdb|1V1G|A Chain A, Structure Of The Arabidopsis Thaliana Sos3 Complexed With
Calcium(Ii) Ion
Length = 222
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL---SGSFMSD 61
+ F +FV L VF A + +KV+ FK+YD G + ++ E++ L S +S+
Sbjct: 91 IEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSE 150
Query: 62 EQREQVLTQVFKDAGYTRDSYLTLGDF 88
+ E ++ + F A D + + ++
Sbjct: 151 DMIEVMVDKAFVQADRKNDGKIDIDEW 177
>pdb|1UHN|A Chain A, The Crystal Structure Of The Calcium Binding Protein
Atcbl2 From Arabidopsis Thaliana
Length = 189
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILE-VLRDL--SGSFMSD 61
L F++F LSVF A + K+ F++YD G + ++ + V+ L SG + D
Sbjct: 71 LGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKD 130
Query: 62 EQREQVLTQVFKDAGYTRD 80
E ++ + F++A D
Sbjct: 131 TVIEDIIDKTFEEADTKHD 149
>pdb|2HF5|A Chain A, The Structure And Function Of A Novel Two-Site Calcium-
Binding Fragment Of Calmodulin
Length = 68
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54
DG DF FL++ + K +++++ F+V+D D NG +S ++ V+ +L
Sbjct: 12 ADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNL 67
>pdb|1FPW|A Chain A, Structure Of Yeast Frequenin
pdb|2JU0|A Chain A, Structure Of Yeast Frequenin Bound To Pdtins 4-Kinase
Length = 190
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 8 KDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQV 67
+DFV F S + +F V+D D NG + F + + VL S + E+
Sbjct: 46 EDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFEEFITVLSTTSRGTL-----EEK 100
Query: 68 LTQVFKDAGYTRDSYLTLGDFIKV 91
L+ F+ D Y+T + + +
Sbjct: 101 LSWAFELYDLNHDGYITFDEMLTI 124
>pdb|2LVI|A Chain A, Solution Structure Of Apo-phl P 7
pdb|2LVJ|A Chain A, Solution Structure Of Hemi-mg-bound Phl P 7
pdb|2LVK|A Chain A, Solution Structure Of Ca-bound Phl P 7
Length = 77
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 27 VQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLG 86
++ IFK +D++ +GK+S +++ + LR L GS +DE ++++ ++ D D ++
Sbjct: 4 MERIFKRFDTNGDGKISLSELTDALRTL-GSTSADEV-QRMMAEIDTDG----DGFIDFN 57
Query: 87 DFIK-VFGNSGLKMEV 101
+FI N GL +V
Sbjct: 58 EFISFCNANPGLMKDV 73
>pdb|2JNF|A Chain A, Solution Structure Of Fly Troponin C, Isoform F1
Length = 158
Score = 30.8 bits (68), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 13 FLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVF 72
FL MQQ+++ F++YD + NG +S + + E+L +L + +S E + ++ ++
Sbjct: 79 FLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDET-LSSEDLDAMIDEID 137
Query: 73 KDAGYTRD 80
D T D
Sbjct: 138 ADGSGTVD 145
>pdb|2K2A|A Chain A, Solution Structure Of The Apo C Terminal Domain Of
Lethoceru C Isoform F1
Length = 70
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRD 80
MQQ+++ F++YD + NG +S + + E+L +L + +S E + ++ ++ D T D
Sbjct: 1 MQQELREAFRLYDKEGNGYISTDVMREILAELDET-LSSEDLDAMIDEIDADGSGTVD 57
>pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium
Bound Ef-hand Protein From Entamoeba Histolytica
Length = 134
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQ 63
+++++ AF+S A +Q +QLIFK D+D NG++ N+ + + G +SD++
Sbjct: 17 VSYEEVKAFVSKKRA-IKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDK 74
>pdb|2NXQ|A Chain A, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|2NXQ|B Chain B, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|3PX1|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3PX1|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3QJK|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3QJK|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3ULG|A Chain A, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
pdb|3ULG|B Chain B, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
Length = 134
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQ 63
+++++ AF+S A + +Q +QLIFK D+D NG++ N+ + + G +SD++
Sbjct: 17 VSYEEVKAFVSKKRAIKN-EQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDK 74
>pdb|2LMT|A Chain A, Nmr Structure Of Androcam
pdb|2LMU|A Chain A, Androcam At High Calcium
pdb|2LMV|A Chain A, Androcam At High Calcium With Three Explicit Ca2+
Length = 148
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQR 64
LNF +F ++ + +++++ FK++D D +G +S ++ V+ +L G ++DE+
Sbjct: 63 LNFTEFCGIMAKQMRETDTEEEMREAFKIFDRDGDGFISPAELRFVMINL-GEKVTDEE- 120
Query: 65 EQVLTQVFKDAGYTRDSYLTLGDFI 89
+ ++ ++A + D + +F+
Sbjct: 121 ---IDEMIREADFDGDGMINYEEFV 142
>pdb|2RO9|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 1 C-Terminal Domain
Length = 69
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 83
+++++ F+V+D D NG +S ++ V+ +L G ++DE+ + ++ ++A D +
Sbjct: 3 EEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTDEE----VDEMIREADVDGDGQI 57
Query: 84 TLGDFIKVF 92
+F+KV
Sbjct: 58 NYEEFVKVM 66
>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420
Length = 504
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 12 AFLSVFSAKASMQQKVQL--IFKVYDSDCNGKVSFNDILE---VLRDLSGSFMSDEQREQ 66
A L + S +++++ +L IFK D + +G++ +++E VLR+ + E+
Sbjct: 340 AILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEE 399
Query: 67 VLTQVFKDAGYTRDSYLTLGDFIKV 91
+ + K+ + ++ Y+ +FI V
Sbjct: 400 EVDNILKEVDFDKNGYIEYSEFISV 424
>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
pdb|1TNX|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal
Muscle Troponin C
Length = 162
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 3 DGLNFKDFVAFLSVF------SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG 56
DG DF FL + AK ++++ F+++D + +G + ++ E+LR +G
Sbjct: 68 DGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILR-ATG 126
Query: 57 SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92
+ +E E ++ KD+ D + +F+K+
Sbjct: 127 EHVIEEDIEDLM----KDSDKNNDGRIDFDEFLKMM 158
>pdb|2KXW|A Chain A, Structure Of The C-Domain Fragment Of Apo Calmodulin
Bound To The Iq Motif Of Nav1.2
Length = 73
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 31 FKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90
FKV+D D NG +S ++ V+ +L DE + ++ ++A D ++ +F++
Sbjct: 14 FKVFDRDGNGLISAAELRHVMTNLGEKLTDDE-----VDEMIREADIDGDGHINYEEFVR 68
Query: 91 VF 92
+
Sbjct: 69 MM 70
>pdb|2EC6|B Chain B, Placopecten Striated Muscle Myosin Ii
Length = 133
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 5 LNFKDFVAFLSVFSAKAS---MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSD 61
LNF F LS+FS K S ++ ++ F ++D D K++ I ++L ++ +F D
Sbjct: 51 LNFTMF---LSIFSDKLSGTDSEETIRNAFGMFDEDATKKLNIEYIKDLLENMGDNFNKD 107
Query: 62 EQR 64
E R
Sbjct: 108 EMR 110
>pdb|1F71|A Chain A, Refined Solution Structure Of Calmodulin C-Terminal
Domain
pdb|1J7P|A Chain A, Solution Structure Of Calcium Calmodulin C-Terminal
Domain
pdb|2K3S|B Chain B, Haddock-Derived Structure Of The Ch-Domain Of The
Smoothelin-Like 1 Complexed With The C-Domain Of
Apocalmodulin
pdb|2KUH|A Chain A, Halothane Binds To Druggable Sites In
Calcium-Calmodulin: Solution Structure Of Halothane-Cam
C-Terminal Domain
pdb|2LLQ|A Chain A, Solution Nmr-Derived Structure Of Calmodulin C-Lobe
Bound With Er Alpha Peptide
Length = 67
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQV 71
+++++ F+V+D D NG +S ++ V+ +L G ++DE+ ++++ +
Sbjct: 1 EEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEMIREA 47
>pdb|1FW4|A Chain A, Crystal Structure Of E. Coli Fragment Tr2c From
Calmodulin To 1.7 A Resolution
pdb|2LQP|A Chain A, Nmr Solution Structure Of The Ca2+-Calmodulin C-Terminal
Domain In A Complex With A Peptide (Nscate) From The
L-Type Voltage-Gated Calcium Channel Alpha1c Subunit
Length = 71
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQV 71
+++++ F+V+D D NG +S ++ V+ +L G ++DE+ ++++ +
Sbjct: 5 EEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEMIREA 51
>pdb|1ZOT|B Chain B, Crystal Structure Analysis Of The CyaaC-Cam With Pmeapp
Length = 69
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQV 71
+++++ F+V+D D NG +S ++ V+ +L G ++DE+ ++++ +
Sbjct: 4 EEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEMIREA 50
>pdb|1CMF|A Chain A, Nmr Solution Structure Of Apo Calmodulin
Carboxy-Terminal Domain
pdb|1CMG|A Chain A, Nmr Solution Structure Of Calcium-Loaded Calmodulin
Carboxy- Terminal Domain
Length = 73
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQV 71
+++++ F+V+D D NG +S ++ V+ +L G ++DE+ ++++ +
Sbjct: 7 EEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEMIREA 53
>pdb|1YRU|B Chain B, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of
Bordetella Pertussis In Presence Of C-Terminal
Calmodulin And 1mm Calcium Chloride
pdb|1YRT|B Chain B, Crystal Structure Analysis Of The Adenylyl Cyclaes
Catalytic Domain Of Adenylyl Cyclase Toxin Of
Bordetella Pertussis In Presence Of C-Terminal
Calmodulin
Length = 74
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQV 71
+++++ F+V+D D NG +S ++ V+ +L G ++DE+ ++++ +
Sbjct: 8 EEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEMIREA 54
>pdb|1OE9|B Chain B, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|B Chain B, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|B Chain B, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 151
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 9 DFVAFLSVFSAKASMQQKVQLI-----FKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQ 63
DF FL + A A + + F+V+D + NGKV ++ VL L G M++E+
Sbjct: 66 DFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTL-GEKMTEEE 124
Query: 64 REQVLT 69
E VL
Sbjct: 125 VETVLA 130
>pdb|2COL|B Chain B, Crystal Structure Analysis Of CyaaC-Cam With
Pyrophosphate
Length = 67
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQV 71
+++++ F+V+D D NG +S ++ V+ +L G ++DE+ ++++ +
Sbjct: 4 EEEIREAFRVFDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEMIREA 50
>pdb|4DS7|A Chain A, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|B Chain B, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|C Chain C, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|D Chain D, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
Length = 147
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 2 VDGLNFKDFVAFLSVFSAKASM---QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
VDG + +F FL++ S + +Q++ FKV+D + +G +S ++ VL + G
Sbjct: 58 VDGNHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSI-GEK 116
Query: 59 MSDEQREQVLTQVFKDAG 76
++D + +++L +V +G
Sbjct: 117 LTDAEVDEMLREVSDGSG 134
>pdb|1JC2|A Chain A, Complex Of The C-Domain Of Troponin C With Residues 1-40
Of Troponin I
Length = 76
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 19 AKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYT 78
AK ++++ F+++D + +G + ++ E+LR +G + +E E ++ KD+
Sbjct: 4 AKGKSEEELANCFRIFDKNADGFIDIEELGEILR-ATGEHVIEEDIEDLM----KDSDKN 58
Query: 79 RDSYLTLGDFIKVF 92
D + +F+K+
Sbjct: 59 NDGRIDFDEFLKMM 72
>pdb|2LHI|A Chain A, Solution Structure Of Ca2+CNA1 PEPTIDE-Bound Ycam
Length = 176
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 2 VDG---LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
VDG + F +F+A +S +Q++ FKV+D + +G +S ++ VL + G
Sbjct: 58 VDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSI-GEK 116
Query: 59 MSDEQREQVLTQVFKDAG 76
++D + + +L +V +G
Sbjct: 117 LTDAEVDDMLREVSDGSG 134
>pdb|1LKJ|A Chain A, Nmr Structure Of Apo Calmodulin From Yeast Saccharomyces
Cerevisiae
Length = 146
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 2 VDG---LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
VDG + F +F+A +S +Q++ FKV+D + +G +S ++ VL + G
Sbjct: 57 VDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSI-GEK 115
Query: 59 MSDEQREQVLTQVFKDAG 76
++D + + +L +V +G
Sbjct: 116 LTDAEVDDMLREVSDGSG 133
>pdb|1H4B|A Chain A, Solution Structure Of The Birch Pollen Allergen Bet V 4
Length = 84
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 28 QLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDE 62
+ IFK +D++ +GK+S ++ E L+ L GS DE
Sbjct: 12 ERIFKRFDANGDGKISAAELGEALKTL-GSITPDE 45
>pdb|2OPO|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|C Chain C, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
pdb|2OPO|D Chain D, Crystal Structure Of The Calcium-Binding Pollen Allergen
Che A 3
Length = 86
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 28 QLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGD 87
+ IFK +D++ +GK+S +++ + L+ L GS DE R +++ ++ D D +++ +
Sbjct: 14 ERIFKRFDTNGDGKISSSELGDALKTL-GSVTPDEVR-RMMAEIDTDG----DGFISFDE 67
Query: 88 FIK-VFGNSGLKMEV 101
F N GL +V
Sbjct: 68 FTDFARANRGLVKDV 82
>pdb|2BL0|B Chain B, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 145
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDL 54
++Q F+++D D +GKVS ++ LR L
Sbjct: 6 QIQECFQIFDKDNDGKVSIEELGSALRSL 34
>pdb|2BE4|A Chain A, X-ray Structure An Ef-hand Protein From Danio Rerio
Dr.36843
pdb|2Q4U|A Chain A, Ensemble Refinement Of The Crystal Structure Of An Ef-Hand
Protein From Danio Rerio Dr.36843
Length = 272
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 13 FLSVFSAKASMQQKVQL--IFKVYDSDCNGKVSFNDILEVLRDL 54
FL +F +A + V+ I++ YD+D +G +S ++ L+DL
Sbjct: 90 FLLIFRREAPLDNSVEFXKIWRKYDADSSGYISAAELKNFLKDL 133
>pdb|3I5G|B Chain B, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|B Chain B, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|B Chain B, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|B Chain B, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 153
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 9 DFVAFLSVFSAKAS---MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQRE 65
+F AFL++F K S + ++ F ++D D G + + + ++L ++ +F +E
Sbjct: 66 NFTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEE--- 122
Query: 66 QVLTQVFKDA 75
+ V+KDA
Sbjct: 123 --IKNVWKDA 130
>pdb|2KZ2|A Chain A, Calmodulin, C-Terminal Domain, F92e Mutant
Length = 94
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQV 71
+++++ F+V D D NG +S ++ V+ +L G ++DE+ ++++ +
Sbjct: 28 EEEIREAFRVEDKDGNGYISAAELRHVMTNL-GEKLTDEEVDEMIREA 74
>pdb|2LV7|A Chain A, Solution Structure Of Ca2+-Bound Cabp7 N-Terminal Doman
Length = 100
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLT 84
++++ FKV+D D NG +S ++ +R L +M +E +V+ Q G D +
Sbjct: 36 EEIREAFKVFDRDGNGFISKQELGTAMRSL--GYMPNEVELEVIIQRLDMDG---DGQVD 90
Query: 85 LGDFIKVFG 93
+F+ + G
Sbjct: 91 FEEFVTLLG 99
>pdb|3FWB|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|E Chain E, Sac3:sus1:cdc31 Complex
pdb|3FWC|I Chain I, Sac3:sus1:cdc31 Complex
pdb|3FWC|M Chain M, Sac3:sus1:cdc31 Complex
Length = 161
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/63 (20%), Positives = 30/63 (47%)
Query: 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQR 64
+ + DF + K +++ F+++D D GK+S ++ V ++L + +E R
Sbjct: 76 MKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELR 135
Query: 65 EQV 67
+
Sbjct: 136 AMI 138
>pdb|2JNX|A Chain A, Nmr Derived Solution Structure Of An Ef-Hand Calcium
Binding Protein From Entamoeba Histolytica
Length = 134
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 32/97 (32%)
Query: 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQ-------------------R 64
+Q +QLIFK D D NG++ + + + +SDE+ +
Sbjct: 35 EQLLQLIFKAIDIDGNGEIDLAEFTKFAAAVKEQDLSDEKVGLKILYKLMDADGDGKLTK 94
Query: 65 EQVLTQVFKDAGYTR------------DSYLTLGDFI 89
E+V T FK GY + D Y+TL +F+
Sbjct: 95 EEV-TTFFKKFGYEKVVDQIMKADANGDGYITLEEFL 130
>pdb|1M8Q|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|T Chain T, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|B Chain B, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|E Chain E, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|H Chain H, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|K Chain K, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|N Chain N, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|Q Chain Q, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 145
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 9 DFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDE 62
+F FL++F K A + + FKV D D G + + + E+L G F +E
Sbjct: 58 NFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEE 114
>pdb|2MYS|B Chain B, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
pdb|1I84|U Chain U, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|Z Chain Z, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 166
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 9 DFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDE 62
+F FL++F K A + + FKV D D G + + + E+L G F +E
Sbjct: 76 NFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEE 132
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKD 74
+V+ IF DSDC GK+SF I + S SF Q+F+D
Sbjct: 262 QVKGIFGFTDSDCIGKISFPAI-QAAPSFSNSF----------PQIFRD 299
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKD 74
+V+ IF DSDC GK+SF I + S SF Q+F+D
Sbjct: 169 QVKGIFGFTDSDCIGKISFPAI-QAAPSFSNSF----------PQIFRD 206
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment
Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKD 74
+V+ IF DSDC GK+SF I + S SF Q+F+D
Sbjct: 169 QVKGIFGFTDSDCIGKISFPAI-QAAPSFSNSF----------PQIFRD 206
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex
With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In Complex
With Trna(trp)
Length = 384
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKD 74
+V+ IF DSDC GK+SF I + S SF Q+F+D
Sbjct: 169 QVKGIFGFTDSDCIGKISFPAI-QAAPSFSNSF----------PQIFRD 206
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKD 74
+V+ IF DSDC GK+SF I + S SF Q+F+D
Sbjct: 181 QVKGIFGFTDSDCIGKISFPAI-QAAPSFSNSF----------PQIFRD 218
>pdb|2GV5|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|D Chain D, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|E Chain E, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|C Chain C, Crystal Structure Of Sfi1pCDC31P COMPLEX
Length = 161
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQ 63
+++ F+++D D GK+S ++ V ++L G ++DE+
Sbjct: 97 EIKRAFQLFDDDHTGKISIKNLRRVAKEL-GETLTDEE 133
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 51 LRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLT 84
L+ LS F ++ Q QV+++V D T+D LT
Sbjct: 104 LQALSARFYANNQVGQVISRVINDVEQTKDFILT 137
>pdb|3LI6|A Chain A, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|D Chain D, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|G Chain G, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|J Chain J, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
Length = 66
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFND 46
+++++ AF+S A + +Q +QLIFK D+D NG++ N+
Sbjct: 16 AVSYEEVKAFVSKKRAIKN-EQLLQLIFKSIDADGNGEIDQNE 57
>pdb|2VF1|A Chain A, X-Ray Crystallographic Structure Of The Picobirnavirus
Capsid
pdb|2VF1|B Chain B, X-Ray Crystallographic Structure Of The Picobirnavirus
Capsid
Length = 525
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 66 QVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGLKMEVEVPVD 106
++L ++ DA D+ GD K FG+ GL E+ VD
Sbjct: 250 ELLDAIYGDA----DAQTMFGDIYKAFGSDGLYSIAEISVD 286
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 9 DFVAFLSVFSAKASM--QQKVQLIFKVYDSDCNGKVSFNDILEV 50
D+ F++V + S+ + K++ F+ +D D NGK+S +++ V
Sbjct: 125 DYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASV 168
>pdb|2LHH|A Chain A, Solution Structure Of Ca2+-Bound Ycam
Length = 128
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 2 VDG---LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF 58
VDG + F +F+A +S +Q++ FKV+D + +G +S ++ VL + G
Sbjct: 57 VDGNHQIEFSEFLALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSI-GEK 115
Query: 59 MSDEQRE 65
++D + E
Sbjct: 116 LTDAELE 122
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/71 (18%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 83
+++++ FK++D D +GK+S ++ ++ S +E L + + +D +
Sbjct: 416 RERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEE-----LESIIEQVDNNKDGEV 470
Query: 84 TLGDFIKVFGN 94
+F+++ N
Sbjct: 471 DFNEFVEMLQN 481
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
pdb|1R6T|B Chain B, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKD 74
+V+ IF DSDC GK+SF I + S SF Q+F+D
Sbjct: 262 QVKGIFGFTDSDCIGKISFPAI-QAAPSFSNSF----------PQIFRD 299
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 9 DFVAFLSVFSAKASM--QQKVQLIFKVYDSDCNGKVSFNDILEV 50
D+ F++V + S+ + K++ F+ +D D NGK+S +++ V
Sbjct: 408 DYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASV 451
>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
pdb|1R6U|B Chain B, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
Length = 437
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKD 74
+V+ IF DSDC GK+SF I + S SF Q+F+D
Sbjct: 215 QVKGIFGFTDSDCIGKISFPAI-QAAPSFSNSF----------PQIFRD 252
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
pdb|2AZX|B Chain B, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKD 74
+V+ IF DSDC GK+SF I + S SF Q+F+D
Sbjct: 262 QVKGIFGFTDSDCIGKISFPAI-QAAPSFSNSF----------PQIFRD 299
>pdb|1GGW|A Chain A, Cdc4p From Schizosaccharomyces Pombe
Length = 140
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 31 FKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90
F+V+D D G + ++ VL L G +S+E+ +++L V +D + DF++
Sbjct: 82 FQVFDKDATGMIGVGELRYVLTSL-GEKLSNEEMDELLKGV-----PVKDGMVNYHDFVQ 135
Query: 91 VF 92
+
Sbjct: 136 MI 137
>pdb|2DZD|A Chain A, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
pdb|2DZD|B Chain B, Crystal Structure Of The Biotin Carboxylase Domain Of
Pyruvate Carboxylase
Length = 461
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 30 IFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL---TQVFKDAGYTRD---SYL 83
I +Y+ DC+ + ++EV +S +SDE R+++ Q+ + GY +L
Sbjct: 226 IVHLYERDCSVQRRHQKVVEVAPSVS---LSDELRQRICEAAVQLMRSVGYVNAGTVEFL 282
Query: 84 TLGD---FIKV 91
GD FI+V
Sbjct: 283 VSGDEFYFIEV 293
>pdb|2D5W|A Chain A, The Crystal Structure Of Oligopeptide Binding Protein From
Thermus Thermophilus Hb8 Complexed With Pentapeptide
pdb|2D5W|B Chain B, The Crystal Structure Of Oligopeptide Binding Protein From
Thermus Thermophilus Hb8 Complexed With Pentapeptide
Length = 603
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 76 GYTRDSYLTLGDFIKVFGNSGLKMEVE 102
G +++ + GDF++V N +K E+E
Sbjct: 11 GASQEPRVLAGDFLRVISNQAIKSEIE 37
>pdb|3AAJ|A Chain A, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
pdb|3AAJ|B Chain B, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
Length = 167
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 14/87 (16%)
Query: 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQ 63
G+NF +F + Q +F+ YD D +G + N++ + LSG +SD Q
Sbjct: 57 GVNFSEFTGVWKYIT-------DWQNVFRTYDRDNSGMIDKNELKQA---LSGYRLSD-Q 105
Query: 64 REQVLTQVFKDAGYTRDSYLTLGDFIK 90
+L + F G + + DFI+
Sbjct: 106 FHDILIRKFDRQGRGQ---IAFDDFIQ 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,878,991
Number of Sequences: 62578
Number of extensions: 98507
Number of successful extensions: 796
Number of sequences better than 100.0: 164
Number of HSP's better than 100.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 556
Number of HSP's gapped (non-prelim): 273
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)