Query 034012
Match_columns 106
No_of_seqs 103 out of 1314
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:48:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0034 Ca2+/calmodulin-depend 99.8 5.3E-19 1.2E-23 112.8 10.3 98 5-102 84-184 (187)
2 COG5126 FRQ1 Ca2+-binding prot 99.8 2.4E-18 5.2E-23 107.0 10.4 89 3-96 70-158 (160)
3 KOG0027 Calmodulin and related 99.7 7.9E-16 1.7E-20 95.6 9.3 88 3-95 59-150 (151)
4 PF13499 EF-hand_7: EF-hand do 99.7 1.6E-15 3.4E-20 81.9 8.3 66 26-92 1-66 (66)
5 KOG0038 Ca2+-binding kinase in 99.6 3.3E-15 7.2E-20 91.0 8.3 94 3-96 86-179 (189)
6 KOG0044 Ca2+ sensor (EF-Hand s 99.6 9.1E-15 2E-19 93.7 7.9 94 3-97 79-178 (193)
7 KOG0028 Ca2+-binding protein ( 99.6 3.5E-14 7.6E-19 87.5 9.5 88 3-95 84-171 (172)
8 PTZ00183 centrin; Provisional 99.5 1.3E-13 2.9E-18 85.3 10.6 89 3-96 68-156 (158)
9 PTZ00184 calmodulin; Provision 99.5 3.2E-13 6.9E-18 82.7 11.1 87 3-94 62-148 (149)
10 cd05022 S-100A13 S-100A13: S-1 99.5 6.7E-14 1.5E-18 79.8 7.3 67 24-95 7-76 (89)
11 cd05027 S-100B S-100B: S-100B 99.5 9.7E-13 2.1E-17 75.0 8.3 67 24-94 7-79 (88)
12 KOG0030 Myosin essential light 99.4 1.1E-12 2.4E-17 79.3 7.9 86 2-93 63-150 (152)
13 cd05026 S-100Z S-100Z: S-100Z 99.4 2.4E-12 5.2E-17 74.1 6.4 67 25-95 10-82 (93)
14 cd05029 S-100A6 S-100A6: S-100 99.3 2E-11 4.3E-16 69.6 8.0 66 25-94 10-79 (88)
15 cd05031 S-100A10_like S-100A10 99.3 1.1E-11 2.3E-16 71.4 6.9 70 24-97 7-82 (94)
16 KOG0037 Ca2+-binding protein, 99.3 2.8E-11 6E-16 78.1 9.4 80 3-94 109-188 (221)
17 KOG0031 Myosin regulatory ligh 99.3 5.3E-11 1.1E-15 73.2 9.9 86 3-93 79-164 (171)
18 cd05025 S-100A1 S-100A1: S-100 99.3 3.1E-11 6.7E-16 69.2 8.2 67 24-94 8-80 (92)
19 smart00027 EH Eps15 homology d 99.3 7.4E-11 1.6E-15 68.1 8.8 65 23-94 8-72 (96)
20 cd00213 S-100 S-100: S-100 dom 99.2 6.2E-11 1.3E-15 67.3 7.6 68 24-95 7-80 (88)
21 KOG0027 Calmodulin and related 99.2 7.1E-11 1.5E-15 73.3 8.3 70 23-97 6-75 (151)
22 cd00052 EH Eps15 homology doma 99.2 1.4E-10 3.1E-15 62.2 7.3 61 28-95 2-62 (67)
23 KOG0044 Ca2+ sensor (EF-Hand s 99.2 1.2E-10 2.5E-15 74.9 7.8 87 3-94 42-128 (193)
24 PF13833 EF-hand_8: EF-hand do 99.2 1.6E-10 3.4E-15 59.9 6.7 52 38-94 1-53 (54)
25 cd00051 EFh EF-hand, calcium b 99.2 2.2E-10 4.8E-15 59.7 7.2 61 27-92 2-62 (63)
26 cd05023 S-100A11 S-100A11: S-1 99.2 4.6E-10 9.9E-15 64.0 8.1 68 23-94 7-80 (89)
27 PTZ00183 centrin; Provisional 99.1 2.2E-09 4.9E-14 66.3 10.8 89 3-96 32-120 (158)
28 cd00252 SPARC_EC SPARC_EC; ext 99.1 9.6E-10 2.1E-14 65.5 7.6 62 24-94 47-108 (116)
29 COG5126 FRQ1 Ca2+-binding prot 99.1 3.9E-09 8.4E-14 66.0 10.1 85 5-95 37-121 (160)
30 PTZ00184 calmodulin; Provision 99.0 4.5E-09 9.8E-14 64.2 9.8 88 3-95 26-113 (149)
31 cd05030 calgranulins Calgranul 99.0 2.2E-09 4.9E-14 61.1 6.8 68 24-95 7-80 (88)
32 PF14658 EF-hand_9: EF-hand do 99.0 3.3E-09 7.2E-14 56.8 6.8 61 29-94 2-64 (66)
33 KOG0036 Predicted mitochondria 98.9 1.7E-08 3.6E-13 70.8 8.8 83 3-96 66-148 (463)
34 KOG0028 Ca2+-binding protein ( 98.8 1E-07 2.2E-12 59.2 9.4 87 3-94 48-134 (172)
35 PF00036 EF-hand_1: EF hand; 98.8 1.1E-08 2.4E-13 46.4 3.9 29 26-54 1-29 (29)
36 KOG0041 Predicted Ca2+-binding 98.8 4.4E-08 9.5E-13 63.0 7.7 68 23-95 97-164 (244)
37 KOG0031 Myosin regulatory ligh 98.8 9.6E-08 2.1E-12 59.0 8.3 73 22-95 29-130 (171)
38 KOG0030 Myosin essential light 98.7 7.3E-08 1.6E-12 58.6 6.5 70 20-94 6-77 (152)
39 cd05024 S-100A10 S-100A10: A s 98.7 4.9E-08 1.1E-12 55.6 5.1 65 25-94 8-76 (91)
40 PLN02964 phosphatidylserine de 98.6 3.2E-07 7E-12 68.3 9.3 64 27-95 181-244 (644)
41 PF13405 EF-hand_6: EF-hand do 98.6 1.4E-07 3.1E-12 43.3 4.0 29 26-54 1-30 (31)
42 PF13833 EF-hand_8: EF-hand do 98.6 3.6E-07 7.8E-12 47.1 5.8 50 3-53 3-53 (54)
43 KOG0037 Ca2+-binding protein, 98.5 1.1E-06 2.4E-11 57.1 8.5 89 3-102 72-160 (221)
44 KOG4065 Uncharacterized conser 98.5 1.1E-06 2.3E-11 52.0 6.8 71 22-92 64-143 (144)
45 PRK12309 transaldolase/EF-hand 98.4 1.6E-06 3.4E-11 61.4 7.9 59 18-94 327-385 (391)
46 KOG0377 Protein serine/threoni 98.4 1.8E-06 3.9E-11 61.5 7.6 69 25-97 547-618 (631)
47 PF00036 EF-hand_1: EF hand; 98.4 4.8E-07 1E-11 41.0 3.2 26 69-94 3-28 (29)
48 KOG0036 Predicted mitochondria 98.3 3E-06 6.5E-11 59.8 6.7 72 22-97 11-82 (463)
49 PF14788 EF-hand_10: EF hand; 98.3 4.9E-06 1.1E-10 42.3 5.7 49 41-94 1-49 (51)
50 PLN02964 phosphatidylserine de 98.3 5.2E-06 1.1E-10 62.0 8.1 67 23-95 141-208 (644)
51 PF13202 EF-hand_5: EF hand; P 98.3 1.7E-06 3.7E-11 37.8 3.4 25 27-51 1-25 (25)
52 PF12763 EF-hand_4: Cytoskelet 98.3 1.7E-05 3.8E-10 46.4 8.3 65 21-93 6-70 (104)
53 KOG0034 Ca2+/calmodulin-depend 98.2 1.8E-05 4E-10 50.9 9.0 83 3-94 49-132 (187)
54 KOG2643 Ca2+ binding protein, 98.2 2.1E-06 4.5E-11 60.9 4.9 48 3-53 214-261 (489)
55 KOG0040 Ca2+-binding actin-bun 98.2 3.7E-06 8E-11 66.9 5.1 72 25-97 2253-2327(2399)
56 PF13499 EF-hand_7: EF-hand do 98.1 6.7E-06 1.4E-10 43.8 4.3 49 3-51 15-66 (66)
57 KOG4223 Reticulocalbin, calume 98.1 6.5E-06 1.4E-10 56.3 5.1 83 3-90 215-301 (325)
58 PF10591 SPARC_Ca_bdg: Secrete 98.0 3.1E-06 6.6E-11 50.3 1.6 61 23-90 52-112 (113)
59 KOG4223 Reticulocalbin, calume 97.9 9.9E-05 2.1E-09 50.7 8.3 81 8-94 61-141 (325)
60 PF13202 EF-hand_5: EF hand; P 97.9 2E-05 4.4E-10 34.3 3.2 23 70-92 3-25 (25)
61 cd00051 EFh EF-hand, calcium b 97.9 0.0001 2.2E-09 37.7 5.8 48 3-51 15-62 (63)
62 PF14788 EF-hand_10: EF hand; 97.8 0.00016 3.4E-09 36.8 5.9 50 4-54 1-50 (51)
63 KOG0046 Ca2+-binding actin-bun 97.8 0.00016 3.5E-09 52.7 7.3 67 25-94 19-85 (627)
64 cd05022 S-100A13 S-100A13: S-1 97.7 0.00015 3.1E-09 41.4 5.2 52 3-54 24-76 (89)
65 KOG4666 Predicted phosphate ac 97.7 0.00011 2.3E-09 50.9 5.2 86 3-94 274-359 (412)
66 KOG0751 Mitochondrial aspartat 97.7 0.00041 8.8E-09 50.5 8.2 88 4-94 90-207 (694)
67 cd05030 calgranulins Calgranul 97.6 0.00018 3.9E-09 40.8 5.1 52 3-54 25-80 (88)
68 cd05029 S-100A6 S-100A6: S-100 97.6 0.00034 7.5E-09 39.7 5.9 52 3-54 27-80 (88)
69 PF13405 EF-hand_6: EF-hand do 97.6 0.00012 2.6E-09 33.3 3.3 25 69-93 3-27 (31)
70 KOG2562 Protein phosphatase 2 97.6 0.00027 6E-09 50.7 6.2 84 3-90 330-420 (493)
71 cd05026 S-100Z S-100Z: S-100Z 97.5 0.00042 9.1E-09 39.7 5.7 51 4-54 28-82 (93)
72 KOG2643 Ca2+ binding protein, 97.5 0.0017 3.7E-08 46.6 9.7 82 3-92 301-382 (489)
73 cd05023 S-100A11 S-100A11: S-1 97.5 0.00046 9.9E-09 39.3 5.7 51 4-54 27-81 (89)
74 KOG4251 Calcium binding protei 97.5 9.7E-05 2.1E-09 49.4 2.9 67 24-92 100-166 (362)
75 smart00054 EFh EF-hand, calciu 97.5 0.00022 4.7E-09 30.7 3.1 27 27-53 2-28 (29)
76 cd00052 EH Eps15 homology doma 97.5 0.00078 1.7E-08 35.5 5.8 49 3-54 14-62 (67)
77 cd05027 S-100B S-100B: S-100B 97.4 0.00073 1.6E-08 38.3 5.7 51 4-54 26-80 (88)
78 PF09279 EF-hand_like: Phospho 97.4 0.0019 4.1E-08 35.9 7.3 69 27-96 2-71 (83)
79 cd05031 S-100A10_like S-100A10 97.3 0.0011 2.3E-08 37.9 5.7 52 3-54 25-80 (94)
80 cd05024 S-100A10 S-100A10: A s 97.3 0.0013 2.8E-08 37.6 5.9 51 4-54 23-77 (91)
81 cd00213 S-100 S-100: S-100 dom 97.3 0.0012 2.5E-08 37.1 5.5 52 3-54 25-80 (88)
82 cd05025 S-100A1 S-100A1: S-100 97.2 0.0019 4E-08 36.7 5.8 51 4-54 27-81 (92)
83 smart00027 EH Eps15 homology d 97.2 0.0017 3.7E-08 37.2 5.7 49 3-54 25-73 (96)
84 KOG0377 Protein serine/threoni 97.2 0.001 2.2E-08 47.9 5.6 78 22-99 461-580 (631)
85 smart00054 EFh EF-hand, calciu 97.0 0.0013 2.9E-08 28.0 3.3 25 70-94 4-28 (29)
86 KOG4251 Calcium binding protei 97.0 0.0022 4.8E-08 43.0 5.3 89 5-93 216-308 (362)
87 cd00252 SPARC_EC SPARC_EC; ext 96.9 0.0045 9.9E-08 36.9 5.4 43 4-51 64-106 (116)
88 PF09069 EF-hand_3: EF-hand; 96.6 0.0097 2.1E-07 33.9 5.2 71 24-97 2-78 (90)
89 PLN02952 phosphoinositide phos 96.3 0.1 2.3E-06 39.3 10.5 93 3-96 15-112 (599)
90 KOG4578 Uncharacterized conser 96.3 0.0029 6.2E-08 44.0 2.2 65 26-94 334-398 (421)
91 PF14658 EF-hand_9: EF-hand do 96.3 0.036 7.7E-07 29.8 6.0 50 4-53 14-64 (66)
92 PF12763 EF-hand_4: Cytoskelet 96.1 0.028 6.2E-07 32.9 5.5 35 20-54 38-72 (104)
93 KOG4347 GTPase-activating prot 96.0 0.029 6.4E-07 42.2 6.1 77 5-87 535-611 (671)
94 KOG2243 Ca2+ release channel ( 95.4 0.035 7.5E-07 45.7 5.0 63 30-98 4062-4124(5019)
95 PRK12309 transaldolase/EF-hand 95.4 0.034 7.4E-07 39.8 4.6 28 27-54 359-386 (391)
96 KOG3555 Ca2+-binding proteogly 95.4 0.03 6.6E-07 39.3 4.0 64 24-96 249-312 (434)
97 KOG0169 Phosphoinositide-speci 95.3 0.068 1.5E-06 40.9 6.0 71 22-97 133-203 (746)
98 KOG4666 Predicted phosphate ac 95.3 0.069 1.5E-06 37.4 5.6 77 25-105 259-335 (412)
99 KOG0751 Mitochondrial aspartat 95.1 0.27 5.8E-06 36.5 8.3 87 7-100 55-142 (694)
100 KOG2562 Protein phosphatase 2 95.1 0.061 1.3E-06 39.1 5.1 57 30-94 283-343 (493)
101 PF05517 p25-alpha: p25-alpha 95.0 0.22 4.8E-06 31.1 6.8 64 27-94 4-69 (154)
102 KOG0042 Glycerol-3-phosphate d 94.9 0.07 1.5E-06 39.9 4.9 65 25-94 593-657 (680)
103 KOG1955 Ral-GTPase effector RA 94.7 0.12 2.7E-06 38.1 5.7 66 25-97 231-296 (737)
104 KOG1029 Endocytic adaptor prot 94.5 0.072 1.6E-06 41.2 4.4 65 23-94 193-257 (1118)
105 KOG0038 Ca2+-binding kinase in 94.1 0.11 2.4E-06 32.4 3.9 61 30-94 76-136 (189)
106 KOG0039 Ferric reductase, NADH 93.9 0.19 4.1E-06 38.3 5.6 85 5-96 4-91 (646)
107 KOG3866 DNA-binding protein of 93.7 0.23 5E-06 34.7 5.2 69 28-96 247-326 (442)
108 KOG0035 Ca2+-binding actin-bun 93.4 0.37 8E-06 37.9 6.4 71 24-95 746-817 (890)
109 PF05042 Caleosin: Caleosin re 92.6 0.67 1.5E-05 29.6 5.7 63 27-94 9-124 (174)
110 KOG1707 Predicted Ras related/ 91.2 0.28 6.1E-06 36.9 3.4 62 25-93 315-376 (625)
111 PF08976 DUF1880: Domain of un 90.6 0.24 5.3E-06 29.5 2.1 33 58-94 3-35 (118)
112 KOG1707 Predicted Ras related/ 89.6 3.4 7.4E-05 31.4 7.8 36 25-60 195-230 (625)
113 KOG0040 Ca2+-binding actin-bun 89.6 2.8 6.1E-05 35.5 7.7 83 3-90 2268-2357(2399)
114 KOG0041 Predicted Ca2+-binding 89.0 4.9 0.00011 26.6 7.4 85 4-90 115-199 (244)
115 PF08726 EFhand_Ca_insen: Ca2+ 88.8 0.77 1.7E-05 24.8 3.1 29 23-52 4-32 (69)
116 KOG1265 Phospholipase C [Lipid 88.3 3.5 7.6E-05 33.0 7.2 84 4-95 204-300 (1189)
117 TIGR01848 PHA_reg_PhaR polyhyd 86.6 4.3 9.4E-05 23.9 5.4 62 32-93 10-76 (107)
118 PF09279 EF-hand_like: Phospho 86.2 1.7 3.7E-05 23.8 3.6 51 3-53 14-69 (83)
119 PLN02230 phosphoinositide phos 84.9 12 0.00026 28.7 8.4 73 22-96 26-104 (598)
120 PF08414 NADPH_Ox: Respiratory 81.7 8.1 0.00018 22.5 6.6 63 25-94 30-92 (100)
121 PF07879 PHB_acc_N: PHB/PHA ac 81.3 3.4 7.4E-05 22.0 3.2 22 32-53 10-31 (64)
122 PF11829 DUF3349: Protein of u 81.0 8.5 0.00018 22.2 5.7 64 5-69 20-83 (96)
123 PLN02223 phosphoinositide phos 80.7 18 0.00039 27.4 7.8 75 22-97 13-95 (537)
124 PF12174 RST: RCD1-SRO-TAF4 (R 80.1 1.8 4E-05 23.4 2.0 48 5-56 9-56 (70)
125 KOG4347 GTPase-activating prot 77.0 2.4 5.1E-05 32.5 2.5 44 2-47 569-612 (671)
126 KOG2871 Uncharacterized conser 76.8 4.1 8.8E-05 29.4 3.4 40 22-62 306-345 (449)
127 PF09068 EF-hand_2: EF hand; 76.6 5.1 0.00011 24.3 3.5 28 26-53 98-125 (127)
128 KOG4004 Matricellular protein 75.5 1.1 2.4E-05 29.5 0.4 56 30-92 192-248 (259)
129 KOG2301 Voltage-gated Ca2+ cha 75.3 1.2 2.5E-05 37.6 0.6 72 22-97 1414-1487(1592)
130 PF05042 Caleosin: Caleosin re 74.8 6.1 0.00013 25.3 3.6 68 24-94 95-166 (174)
131 PF07308 DUF1456: Protein of u 74.8 11 0.00024 20.2 4.6 48 42-94 14-61 (68)
132 PF10591 SPARC_Ca_bdg: Secrete 74.6 4 8.8E-05 24.1 2.6 28 22-49 85-112 (113)
133 PLN02228 Phosphoinositide phos 74.2 28 0.00061 26.6 7.4 68 22-95 21-93 (567)
134 KOG0169 Phosphoinositide-speci 72.4 46 0.001 26.3 9.1 89 4-97 188-277 (746)
135 KOG1029 Endocytic adaptor prot 72.2 14 0.00031 29.3 5.6 61 27-94 15-77 (1118)
136 PLN02222 phosphoinositide phos 71.6 34 0.00074 26.3 7.3 68 23-95 23-91 (581)
137 KOG1955 Ral-GTPase effector RA 70.7 5.4 0.00012 30.0 3.0 36 20-55 260-295 (737)
138 KOG0998 Synaptic vesicle prote 69.7 2.9 6.2E-05 33.2 1.5 63 25-94 283-345 (847)
139 PLN02952 phosphoinositide phos 66.8 27 0.00058 26.9 6.0 52 38-94 13-65 (599)
140 cd07313 terB_like_2 tellurium 66.8 14 0.00029 21.0 3.7 52 38-93 12-64 (104)
141 PF01023 S_100: S-100/ICaBP ty 65.7 14 0.00031 17.9 4.0 30 25-54 6-37 (44)
142 KOG3442 Uncharacterized conser 65.7 18 0.0004 21.9 4.0 44 37-82 51-94 (132)
143 PF02864 STAT_bind: STAT prote 61.6 24 0.00052 24.1 4.5 50 41-90 178-231 (254)
144 PF02269 TFIID-18kDa: Transcri 61.4 5.5 0.00012 22.7 1.3 34 64-97 36-69 (93)
145 cd07978 TAF13 The TATA Binding 60.4 30 0.00065 19.7 5.5 33 64-97 37-69 (92)
146 KOG4578 Uncharacterized conser 58.8 14 0.0003 26.4 3.1 44 7-53 355-398 (421)
147 COG2818 Tag 3-methyladenine DN 58.5 5.5 0.00012 25.8 1.0 48 5-53 36-83 (188)
148 KOG4403 Cell surface glycoprot 54.8 16 0.00034 27.1 2.9 49 5-53 45-96 (575)
149 TIGR00624 tag DNA-3-methyladen 53.7 6.4 0.00014 25.3 0.8 65 22-90 50-114 (179)
150 TIGR02675 tape_meas_nterm tape 53.5 17 0.00037 19.7 2.4 19 36-54 25-43 (75)
151 PF09336 Vps4_C: Vps4 C termin 53.2 18 0.0004 18.9 2.4 26 41-67 29-54 (62)
152 KOG1954 Endocytosis/signaling 52.8 26 0.00056 25.7 3.7 46 38-90 456-501 (532)
153 PF09373 PMBR: Pseudomurein-bi 51.5 15 0.00033 16.6 1.7 15 80-94 2-16 (33)
154 PF11116 DUF2624: Protein of u 49.4 48 0.001 18.7 6.8 52 2-54 12-63 (85)
155 PF00404 Dockerin_1: Dockerin 49.3 21 0.00045 14.6 2.3 17 35-51 1-17 (21)
156 PRK10353 3-methyl-adenine DNA 48.4 5.8 0.00013 25.7 -0.0 67 22-90 51-117 (187)
157 PRK09071 hypothetical protein; 46.7 81 0.0018 22.3 5.4 24 41-64 20-43 (323)
158 COG5562 Phage envelope protein 46.1 29 0.00062 21.4 2.7 26 77-102 83-109 (137)
159 PF04282 DUF438: Family of unk 44.8 52 0.0011 17.9 4.8 46 20-69 11-56 (71)
160 PRK00819 RNA 2'-phosphotransfe 44.4 70 0.0015 20.6 4.4 32 36-68 28-59 (179)
161 KOG4301 Beta-dystrobrevin [Cyt 42.9 46 0.001 24.0 3.6 83 15-104 137-226 (434)
162 PF04558 tRNA_synt_1c_R1: Glut 41.8 28 0.00061 22.1 2.3 50 24-75 84-133 (164)
163 PF01885 PTS_2-RNA: RNA 2'-pho 41.8 73 0.0016 20.6 4.3 33 35-68 26-58 (186)
164 COG3763 Uncharacterized protei 40.7 62 0.0013 17.6 4.2 30 38-68 35-64 (71)
165 PHA02335 hypothetical protein 38.6 79 0.0017 18.7 3.6 45 2-53 22-68 (118)
166 TIGR00988 hip integration host 38.4 54 0.0012 18.3 3.0 44 44-88 3-48 (94)
167 PF03979 Sigma70_r1_1: Sigma-7 38.3 70 0.0015 17.5 3.5 28 38-68 18-45 (82)
168 PF09068 EF-hand_2: EF hand; 38.0 92 0.002 18.8 9.5 90 3-92 13-123 (127)
169 PHA02100 hypothetical protein 37.7 83 0.0018 18.1 3.5 35 56-90 27-61 (112)
170 PF04876 Tenui_NCP: Tenuivirus 37.6 1.1E+02 0.0023 19.4 6.1 56 37-95 95-161 (175)
171 KOG0046 Ca2+-binding actin-bun 37.5 1.2E+02 0.0026 23.3 5.2 50 4-53 34-85 (627)
172 PF03672 UPF0154: Uncharacteri 37.4 68 0.0015 17.1 4.1 30 38-68 28-57 (64)
173 cd06404 PB1_aPKC PB1 domain is 36.3 82 0.0018 17.7 4.1 15 4-18 19-33 (83)
174 KOG0998 Synaptic vesicle prote 36.1 21 0.00045 28.6 1.3 63 25-94 11-73 (847)
175 KOG3449 60S acidic ribosomal p 34.0 1.1E+02 0.0023 18.3 5.2 38 30-68 6-43 (112)
176 PF15017 AF1Q: Drug resistance 33.5 25 0.00054 20.0 1.0 16 35-50 69-84 (87)
177 cd01570 NAPRTase_A Nicotinate 33.3 1E+02 0.0022 21.7 4.2 49 38-97 37-85 (327)
178 cd00893 PI4Kc_III Phosphoinosi 32.7 1.7E+02 0.0037 20.3 7.8 83 6-90 200-283 (289)
179 PF06226 DUF1007: Protein of u 31.7 43 0.00092 22.0 2.1 24 31-54 56-79 (212)
180 TIGR03573 WbuX N-acetyl sugar 31.6 1.6E+02 0.0035 20.8 5.0 43 38-91 299-341 (343)
181 PF12872 OST-HTH: OST-HTH/LOTU 31.3 84 0.0018 16.3 4.6 36 39-91 21-56 (74)
182 PRK00523 hypothetical protein; 31.1 96 0.0021 16.9 4.0 30 38-68 36-65 (72)
183 PF13075 DUF3939: Protein of u 30.4 13 0.00028 23.0 -0.5 47 41-96 9-55 (140)
184 PF14513 DAG_kinase_N: Diacylg 30.3 1.4E+02 0.003 18.4 6.3 35 38-76 45-79 (138)
185 TIGR00987 himA integration hos 30.3 65 0.0014 18.1 2.5 45 42-88 2-48 (96)
186 PF12486 DUF3702: ImpA domain 30.2 1.1E+02 0.0023 19.2 3.5 29 26-54 70-98 (148)
187 KOG4070 Putative signal transd 29.8 1.3E+02 0.0028 19.1 3.8 33 2-34 71-107 (180)
188 PF02885 Glycos_trans_3N: Glyc 29.6 91 0.002 16.2 3.8 29 40-68 13-41 (66)
189 cd07316 terB_like_DjlA N-termi 29.1 1.1E+02 0.0024 17.0 5.3 16 38-53 12-27 (106)
190 PF03352 Adenine_glyco: Methyl 28.8 5.3 0.00011 25.7 -2.5 69 24-94 48-116 (179)
191 PF11020 DUF2610: Domain of un 28.5 1.1E+02 0.0025 17.0 3.0 40 49-92 36-75 (82)
192 PF06648 DUF1160: Protein of u 28.5 1.4E+02 0.0031 18.0 5.3 49 19-70 31-79 (122)
193 PF05517 p25-alpha: p25-alpha 28.4 1.5E+02 0.0033 18.4 6.0 50 5-54 19-70 (154)
194 PF04963 Sigma54_CBD: Sigma-54 28.3 1.3E+02 0.0029 19.4 3.9 50 35-89 44-93 (194)
195 PF14164 YqzH: YqzH-like prote 28.1 1E+02 0.0023 16.4 3.3 29 26-54 9-38 (64)
196 PF05099 TerB: Tellurite resis 27.9 31 0.00067 20.5 0.9 16 38-53 36-51 (140)
197 cd05167 PI4Kc_III_alpha Phosph 26.9 2.3E+02 0.005 20.0 7.7 84 7-92 223-307 (311)
198 TIGR01209 RNA ligase, Pab1020 26.3 1.3E+02 0.0028 21.9 3.8 53 27-80 159-218 (374)
199 PRK10753 transcriptional regul 26.3 82 0.0018 17.6 2.4 30 44-75 3-32 (90)
200 PRK14981 DNA-directed RNA poly 25.9 1.5E+02 0.0032 17.4 4.5 22 45-67 82-103 (112)
201 PF10897 DUF2713: Protein of u 25.7 1.7E+02 0.0036 19.5 3.9 51 3-53 176-238 (246)
202 PF09873 DUF2100: Uncharacteri 25.7 2.1E+02 0.0046 19.1 4.9 39 34-72 34-83 (215)
203 PRK05849 hypothetical protein; 25.5 1.7E+02 0.0038 23.5 4.6 55 38-104 471-526 (783)
204 COG4103 Uncharacterized protei 25.2 1.8E+02 0.0039 18.2 4.0 59 27-93 32-93 (148)
205 PRK01060 endonuclease IV; Prov 25.0 1E+02 0.0022 20.7 3.0 27 79-105 233-262 (281)
206 PF08461 HTH_12: Ribonuclease 24.6 1.2E+02 0.0026 15.9 2.8 36 38-78 10-45 (66)
207 cd00952 CHBPH_aldolase Trans-o 24.6 2.5E+02 0.0054 19.5 5.0 39 38-76 22-75 (309)
208 KOG4286 Dystrophin-like protei 24.5 1E+02 0.0022 24.8 3.2 51 25-80 470-520 (966)
209 KOG0506 Glutaminase (contains 24.0 2.8E+02 0.0061 21.2 5.2 65 28-94 89-158 (622)
210 PF13829 DUF4191: Domain of un 23.9 2.4E+02 0.0051 19.0 4.7 39 36-76 162-200 (224)
211 PF08479 POTRA_2: POTRA domain 23.8 73 0.0016 16.9 1.8 35 37-71 9-43 (76)
212 PF08730 Rad33: Rad33; InterP 23.2 2.2E+02 0.0047 18.3 5.3 33 2-34 100-132 (170)
213 PF09851 SHOCT: Short C-termin 23.2 87 0.0019 13.8 2.0 15 39-53 14-28 (31)
214 PF08355 EF_assoc_1: EF hand a 22.9 84 0.0018 17.2 1.9 19 75-93 11-29 (76)
215 TIGR01639 P_fal_TIGR01639 Plas 22.7 1.3E+02 0.0028 15.6 4.4 31 39-70 7-37 (61)
216 PRK01844 hypothetical protein; 22.6 1.5E+02 0.0032 16.2 4.0 30 38-68 35-64 (72)
217 COG1508 RpoN DNA-directed RNA 22.4 3.4E+02 0.0074 20.3 8.8 51 36-90 120-170 (444)
218 PRK11858 aksA trans-homoaconit 22.4 3E+02 0.0066 19.8 6.3 49 44-94 322-370 (378)
219 PF08349 DUF1722: Protein of u 22.2 1.8E+02 0.0039 17.0 5.3 35 56-94 63-97 (117)
220 COG2979 Uncharacterized protei 21.8 1.5E+02 0.0032 19.9 3.1 36 35-71 120-155 (225)
221 PF08672 APC2: Anaphase promot 21.7 1.4E+02 0.003 15.5 3.9 32 22-54 12-45 (60)
222 PF02761 Cbl_N2: CBL proto-onc 21.3 1.7E+02 0.0037 16.5 5.5 50 4-54 22-71 (85)
223 TIGR03249 KdgD 5-dehydro-4-deo 21.3 2.8E+02 0.0062 19.0 5.1 40 37-76 18-72 (296)
224 PF15144 DUF4576: Domain of un 21.1 1.5E+02 0.0033 16.5 2.6 44 37-86 36-79 (88)
225 PF11422 IBP39: Initiator bind 21.0 1.8E+02 0.004 18.8 3.3 56 4-60 36-93 (181)
226 PLN02859 glutamine-tRNA ligase 20.8 1.7E+02 0.0037 23.6 3.7 51 23-75 85-135 (788)
227 KOG2557 Uncharacterized conser 20.7 3.5E+02 0.0077 19.9 5.0 51 4-55 74-124 (427)
228 COG1460 Uncharacterized protei 20.7 2.1E+02 0.0045 17.2 4.6 24 44-68 82-105 (114)
229 KOG2301 Voltage-gated Ca2+ cha 20.5 1E+02 0.0022 26.9 2.7 38 59-97 1411-1448(1592)
230 PF09967 DUF2201: VWA-like dom 20.4 92 0.002 18.6 1.9 18 37-54 6-23 (126)
No 1
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.81 E-value=5.3e-19 Score=112.83 Aligned_cols=98 Identities=34% Similarity=0.584 Sum_probs=89.9
Q ss_pred ccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHhcCCCCCc
Q 034012 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMS--DEQREQVLTQVFKDAGYTRDSY 82 (106)
Q Consensus 5 i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~--~~~~~~~~~~~~~~~d~~~~g~ 82 (106)
|+|++|+.+++.+.+....+++++.+|++||.+++|+|+.+|+..++..+++...+ +++.+.++++++.++|.++||+
T Consensus 84 v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~ 163 (187)
T KOG0034|consen 84 VDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGK 163 (187)
T ss_pred cCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCc
Confidence 89999999999999888888999999999999999999999999999998887777 9999999999999999999999
Q ss_pred ccHHHHHHHHhcC-CCceeee
Q 034012 83 LTLGDFIKVFGNS-GLKMEVE 102 (106)
Q Consensus 83 I~~~ef~~~l~~~-~~~~~~~ 102 (106)
|+|+||..++.+. .+...+.
T Consensus 164 IsfeEf~~~v~~~P~~~~~m~ 184 (187)
T KOG0034|consen 164 ISFEEFCKVVEKQPDLLEKMT 184 (187)
T ss_pred CcHHHHHHHHHcCccHHHHcC
Confidence 9999999999887 4444333
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.79 E-value=2.4e-18 Score=106.97 Aligned_cols=89 Identities=26% Similarity=0.509 Sum_probs=82.7
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~ 82 (106)
..|+|.+|+.++.....+..+.+++..+|+.||+|++|+|+..+++.+++.+ |..+++++++.+ ++.+|.+++|.
T Consensus 70 ~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l-ge~~~deev~~l----l~~~d~d~dG~ 144 (160)
T COG5126 70 ETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSL-GERLSDEEVEKL----LKEYDEDGDGE 144 (160)
T ss_pred CccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhh-cccCCHHHHHHH----HHhcCCCCCce
Confidence 4799999999999988788889999999999999999999999999999997 999999999888 69999999999
Q ss_pred ccHHHHHHHHhcCC
Q 034012 83 LTLGDFIKVFGNSG 96 (106)
Q Consensus 83 I~~~ef~~~l~~~~ 96 (106)
|+|++|.+.+...+
T Consensus 145 i~~~eF~~~~~~~~ 158 (160)
T COG5126 145 IDYEEFKKLIKDSP 158 (160)
T ss_pred EeHHHHHHHHhccC
Confidence 99999999776543
No 3
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.67 E-value=7.9e-16 Score=95.61 Aligned_cols=88 Identities=19% Similarity=0.514 Sum_probs=77.0
Q ss_pred CcccHHHHHHHHhhhccCCC----HHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCC
Q 034012 3 DGLNFKDFVAFLSVFSAKAS----MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYT 78 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~----~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~ 78 (106)
..|++.+|+..+........ ..+.++.+|+.||++++|+|+.+||+.++..+ |.+++.+++..+ ++.+|.+
T Consensus 59 g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l-g~~~~~~e~~~m----i~~~d~d 133 (151)
T KOG0027|consen 59 GTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSL-GEKLTDEECKEM----IREVDVD 133 (151)
T ss_pred CeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh-CCcCCHHHHHHH----HHhcCCC
Confidence 36999999999998643222 24599999999999999999999999999997 999998888887 7999999
Q ss_pred CCCcccHHHHHHHHhcC
Q 034012 79 RDSYLTLGDFIKVFGNS 95 (106)
Q Consensus 79 ~~g~I~~~ef~~~l~~~ 95 (106)
++|.|+|++|+.++...
T Consensus 134 ~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 134 GDGKVNFEEFVKMMSGK 150 (151)
T ss_pred CCCeEeHHHHHHHHhcC
Confidence 99999999999988653
No 4
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.65 E-value=1.6e-15 Score=81.90 Aligned_cols=66 Identities=26% Similarity=0.570 Sum_probs=61.4
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 034012 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92 (106)
Q Consensus 26 ~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 92 (106)
+++.+|+.+|+|++|+|+.+|++.++..+ +...+.+++...++.+|..+|.+++|.|+|+||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL-GRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT-TSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh-cccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47889999999999999999999999997 8888888899999999999999999999999999874
No 5
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.63 E-value=3.3e-15 Score=91.04 Aligned_cols=94 Identities=30% Similarity=0.478 Sum_probs=87.2
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~ 82 (106)
+.++|++|+..++.++.....+-++..+|+.||.|+++.|...++...++++....++++++..+++++++++|.+|||+
T Consensus 86 GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgk 165 (189)
T KOG0038|consen 86 GNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGK 165 (189)
T ss_pred CcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 47899999999999986777778999999999999999999999999999988899999999999999999999999999
Q ss_pred ccHHHHHHHHhcCC
Q 034012 83 LTLGDFIKVFGNSG 96 (106)
Q Consensus 83 I~~~ef~~~l~~~~ 96 (106)
+++.+|.+++.+.+
T Consensus 166 l~~~eFe~~i~raP 179 (189)
T KOG0038|consen 166 LSFAEFEHVILRAP 179 (189)
T ss_pred ccHHHHHHHHHhCc
Confidence 99999999776644
No 6
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.58 E-value=9.1e-15 Score=93.68 Aligned_cols=94 Identities=24% Similarity=0.498 Sum_probs=80.0
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhc---CC---CCCHHHHHHHHHHHHHHhc
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLS---GS---FMSDEQREQVLTQVFKDAG 76 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~---~~---~l~~~~~~~~~~~~~~~~d 76 (106)
..|+|.||+++++... .+..++++..+|++||.|++|+|+++|+..++..+. +. +..+...+..++.+|..+|
T Consensus 79 g~i~F~Efi~als~~~-rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D 157 (193)
T KOG0044|consen 79 GTIDFLEFICALSLTS-RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMD 157 (193)
T ss_pred CCcCHHHHHHHHHHHc-CCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcC
Confidence 3799999999999987 889999999999999999999999999999988642 22 1234456778888899999
Q ss_pred CCCCCcccHHHHHHHHhcCCC
Q 034012 77 YTRDSYLTLGDFIKVFGNSGL 97 (106)
Q Consensus 77 ~~~~g~I~~~ef~~~l~~~~~ 97 (106)
.|+||.||+++|.......+.
T Consensus 158 ~n~Dg~lT~eef~~~~~~d~~ 178 (193)
T KOG0044|consen 158 KNKDGKLTLEEFIEGCKADPS 178 (193)
T ss_pred CCCCCcccHHHHHHHhhhCHH
Confidence 999999999999998776543
No 7
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=3.5e-14 Score=87.52 Aligned_cols=88 Identities=22% Similarity=0.479 Sum_probs=81.5
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~ 82 (106)
..|+|++|+..+........+.+.+..+|+.+|-|++|+|++.+|+.+...+ |++++++++.++ ++++|.+++|.
T Consensus 84 g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeL-genltD~El~eM----IeEAd~d~dge 158 (172)
T KOG0028|consen 84 GKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKEL-GENLTDEELMEM----IEEADRDGDGE 158 (172)
T ss_pred ceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHh-CccccHHHHHHH----HHHhccccccc
Confidence 4699999999998876667799999999999999999999999999999997 999999999999 59999999999
Q ss_pred ccHHHHHHHHhcC
Q 034012 83 LTLGDFIKVFGNS 95 (106)
Q Consensus 83 I~~~ef~~~l~~~ 95 (106)
|+-++|..++++.
T Consensus 159 vneeEF~~imk~t 171 (172)
T KOG0028|consen 159 VNEEEFIRIMKKT 171 (172)
T ss_pred ccHHHHHHHHhcC
Confidence 9999999998764
No 8
>PTZ00183 centrin; Provisional
Probab=99.55 E-value=1.3e-13 Score=85.34 Aligned_cols=89 Identities=18% Similarity=0.479 Sum_probs=77.5
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~ 82 (106)
+.|+|.+|+.++....+.....+.+..+|+.+|++++|+|+.+|+..++... +..++.+++..+ +..+|.+++|.
T Consensus 68 g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~l~~~~~~~~----~~~~d~~~~g~ 142 (158)
T PTZ00183 68 GKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKEL-GETITDEELQEM----IDEADRNGDGE 142 (158)
T ss_pred CcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHH----HHHhCCCCCCc
Confidence 3689999999887754455566789999999999999999999999999986 888998887777 78999999999
Q ss_pred ccHHHHHHHHhcCC
Q 034012 83 LTLGDFIKVFGNSG 96 (106)
Q Consensus 83 I~~~ef~~~l~~~~ 96 (106)
|+|++|..++.+.+
T Consensus 143 i~~~ef~~~~~~~~ 156 (158)
T PTZ00183 143 ISEEEFYRIMKKTN 156 (158)
T ss_pred CcHHHHHHHHhccc
Confidence 99999999987754
No 9
>PTZ00184 calmodulin; Provisional
Probab=99.53 E-value=3.2e-13 Score=82.68 Aligned_cols=87 Identities=22% Similarity=0.498 Sum_probs=75.1
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~ 82 (106)
+.|+|++|...+..........+.+..+|+.+|.+++|+|+.+++..++..+ +..++.+++..+ +..+|.+++|+
T Consensus 62 g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~----~~~~d~~~~g~ 136 (149)
T PTZ00184 62 GTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL-GEKLTDEEVDEM----IREADVDGDGQ 136 (149)
T ss_pred CcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH-CCCCCHHHHHHH----HHhcCCCCCCc
Confidence 3699999999988764445566789999999999999999999999999986 888888877776 78899999999
Q ss_pred ccHHHHHHHHhc
Q 034012 83 LTLGDFIKVFGN 94 (106)
Q Consensus 83 I~~~ef~~~l~~ 94 (106)
|+|++|+.++..
T Consensus 137 i~~~ef~~~~~~ 148 (149)
T PTZ00184 137 INYEEFVKMMMS 148 (149)
T ss_pred CcHHHHHHHHhc
Confidence 999999987753
No 10
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.53 E-value=6.7e-14 Score=79.81 Aligned_cols=67 Identities=19% Similarity=0.311 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhcC-CCCCceeHHHHHHHHHH-hcCCCCCH-HHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcC
Q 034012 24 QQKVQLIFKVYDS-DCNGKVSFNDILEVLRD-LSGSFMSD-EQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 95 (106)
Q Consensus 24 ~~~~~~~F~~~D~-d~~g~i~~~el~~~l~~-~~~~~l~~-~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 95 (106)
...+..+|+.||+ +++|+|+..||+.++.. + +..+++ ++++.+ ++.+|.|+||+|+|+||+.++.+.
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~el-g~~ls~~~~v~~m----i~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQL-PHLLKDVEGLEEK----MKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHh-hhhccCHHHHHHH----HHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3578999999999 99999999999999998 6 877887 666666 799999999999999999988653
No 11
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.45 E-value=9.7e-13 Score=74.96 Aligned_cols=67 Identities=12% Similarity=0.239 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhc-CCCCC-ceeHHHHHHHHHH----hcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 24 QQKVQLIFKVYD-SDCNG-KVSFNDILEVLRD----LSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 24 ~~~~~~~F~~~D-~d~~g-~i~~~el~~~l~~----~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
...+..+|+.|| ++++| +|+.+||+.+++. +++...++++++++ ++.+|.+++|+|+|++|+.++..
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~----i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKV----METLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHH----HHHhCCCCCCcCcHHHHHHHHHH
Confidence 357899999998 89999 6999999999998 23888888888887 68999999999999999998764
No 12
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.43 E-value=1.1e-12 Score=79.28 Aligned_cols=86 Identities=20% Similarity=0.377 Sum_probs=73.2
Q ss_pred CCcccHHHHHHHHhhhcc--CCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCC
Q 034012 2 VDGLNFKDFVAFLSVFSA--KASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTR 79 (106)
Q Consensus 2 ~~~i~~~eF~~~~~~~~~--~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~ 79 (106)
+++|+|++|+-.+..+.+ .+..-+.+....+.||++++|+|...||+.++..+ |..+++++++.++ ... -+.
T Consensus 63 ~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttl-Gekl~eeEVe~Ll----ag~-eD~ 136 (152)
T KOG0030|consen 63 VKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTL-GEKLTEEEVEELL----AGQ-EDS 136 (152)
T ss_pred hhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHH-HhhccHHHHHHHH----ccc-ccc
Confidence 468999999999999753 33455889999999999999999999999999998 9999999999984 333 457
Q ss_pred CCcccHHHHHHHHh
Q 034012 80 DSYLTLGDFIKVFG 93 (106)
Q Consensus 80 ~g~I~~~ef~~~l~ 93 (106)
+|.|.|+.|++.+.
T Consensus 137 nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 137 NGCINYEAFVKHIM 150 (152)
T ss_pred CCcCcHHHHHHHHh
Confidence 89999999998653
No 13
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.37 E-value=2.4e-12 Score=74.06 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=53.9
Q ss_pred HHHHHHHHhhc-CCCCC-ceeHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcC
Q 034012 25 QKVQLIFKVYD-SDCNG-KVSFNDILEVLRDLSG----SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 95 (106)
Q Consensus 25 ~~~~~~F~~~D-~d~~g-~i~~~el~~~l~~~~~----~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 95 (106)
..+..+|+.|| +|++| +|+.+||+.++....+ ...++.++..+ +..+|.+++|.|+|+||+.++...
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i----~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKI----MNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHH----HHHhCCCCCCCCCHHHHHHHHHHH
Confidence 56788899998 88998 5999999999976323 23355555555 899999999999999999988653
No 14
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.32 E-value=2e-11 Score=69.56 Aligned_cols=66 Identities=17% Similarity=0.383 Sum_probs=57.4
Q ss_pred HHHHHHHHhhcC-CC-CCceeHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 25 QKVQLIFKVYDS-DC-NGKVSFNDILEVLRDL--SGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 25 ~~~~~~F~~~D~-d~-~g~i~~~el~~~l~~~--~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
..+..+|+.||. ++ +|+|+.+||+.+++.. .|.+++++++.++ ++..|.+++|+|+|++|+.++..
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m----~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKL----MEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHH----HHHhcCCCCCCCcHHHHHHHHHH
Confidence 567889999997 67 8999999999999741 3888999988887 79999999999999999998765
No 15
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.32 E-value=1.1e-11 Score=71.41 Aligned_cols=70 Identities=14% Similarity=0.298 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhcC-CC-CCceeHHHHHHHHHHh----cCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcCCC
Q 034012 24 QQKVQLIFKVYDS-DC-NGKVSFNDILEVLRDL----SGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 97 (106)
Q Consensus 24 ~~~~~~~F~~~D~-d~-~g~i~~~el~~~l~~~----~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 97 (106)
...+..+|+.||. ++ +|+|+.+|++.++... ++..++.++++.+ +..+|.+++|.|+|++|+.++.+.++
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~----~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKI----MKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHH----HHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 4578899999997 87 6999999999999862 1556677777776 79999999999999999998876544
No 16
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.31 E-value=2.8e-11 Score=78.15 Aligned_cols=80 Identities=20% Similarity=0.367 Sum_probs=71.6
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~ 82 (106)
.+|+++||.+.|..+ ..++.+|+.||+|++|.|+..||+..+..+ |..++++-.+.+ ++.+|..+.|.
T Consensus 109 G~i~f~EF~~Lw~~i-------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~-Gy~Lspq~~~~l----v~kyd~~~~g~ 176 (221)
T KOG0037|consen 109 GTIGFKEFKALWKYI-------NQWRNVFRTYDRDRSGTIDSSELRQALTQL-GYRLSPQFYNLL----VRKYDRFGGGR 176 (221)
T ss_pred CccCHHHHHHHHHHH-------HHHHHHHHhcccCCCCcccHHHHHHHHHHc-CcCCCHHHHHHH----HHHhccccCCc
Confidence 479999999999997 589999999999999999999999999997 999998876666 68888888999
Q ss_pred ccHHHHHHHHhc
Q 034012 83 LTLGDFIKVFGN 94 (106)
Q Consensus 83 I~~~ef~~~l~~ 94 (106)
|.|++|++.+..
T Consensus 177 i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 177 IDFDDFIQCCVV 188 (221)
T ss_pred eeHHHHHHHHHH
Confidence 999999996644
No 17
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.31 E-value=5.3e-11 Score=73.21 Aligned_cols=86 Identities=17% Similarity=0.379 Sum_probs=80.2
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~ 82 (106)
..|+|.-|+..+.....+..+++.+..+|+.||.++.|.|..+.++.+|... |-.+++++++.+ ++.+-.+..|.
T Consensus 79 gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~-gDr~~~eEV~~m----~r~~p~d~~G~ 153 (171)
T KOG0031|consen 79 GPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTM-GDRFTDEEVDEM----YREAPIDKKGN 153 (171)
T ss_pred CCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHh-cccCCHHHHHHH----HHhCCcccCCc
Confidence 3689999999999977788999999999999999999999999999999997 999999998888 79998888999
Q ss_pred ccHHHHHHHHh
Q 034012 83 LTLGDFIKVFG 93 (106)
Q Consensus 83 I~~~ef~~~l~ 93 (106)
+.|..|+.++.
T Consensus 154 ~dy~~~~~~it 164 (171)
T KOG0031|consen 154 FDYKAFTYIIT 164 (171)
T ss_pred eeHHHHHHHHH
Confidence 99999999887
No 18
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.30 E-value=3.1e-11 Score=69.20 Aligned_cols=67 Identities=10% Similarity=0.243 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhc-CCCCC-ceeHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 24 QQKVQLIFKVYD-SDCNG-KVSFNDILEVLRDLSGS----FMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 24 ~~~~~~~F~~~D-~d~~g-~i~~~el~~~l~~~~~~----~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
.+.++.+|+.|| ++++| +|+..|++.+++..++. .++.++++.+ +..+|.+++|.|+|++|+.++.+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i----~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKI----MKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHH----HHHHCCCCCCcCcHHHHHHHHHH
Confidence 467899999997 99999 59999999999852143 4566776666 79999999999999999998765
No 19
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.27 E-value=7.4e-11 Score=68.11 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 23 ~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
....+..+|+.+|++++|.|+.+|++.+++.. + ++.+++..+ +..+|.+++|.|+|++|+.++..
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~--~~~~ev~~i----~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-G--LPQTLLAKI----WNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-C--CCHHHHHHH----HHHhcCCCCCCcCHHHHHHHHHH
Confidence 44678999999999999999999999999985 4 677776666 78999999999999999997765
No 20
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.25 E-value=6.2e-11 Score=67.30 Aligned_cols=68 Identities=18% Similarity=0.370 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhcC--CCCCceeHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcC
Q 034012 24 QQKVQLIFKVYDS--DCNGKVSFNDILEVLRDLSGSFM----SDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 95 (106)
Q Consensus 24 ~~~~~~~F~~~D~--d~~g~i~~~el~~~l~~~~~~~l----~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 95 (106)
.+.+..+|+.||+ +++|+|+.++++.+++...+..+ +.+++..+ +..+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i----~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKI----MKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHH----HHHhccCCCCcCcHHHHHHHHHHH
Confidence 3568899999999 89999999999999986325444 46666666 799999999999999999988764
No 21
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.25 E-value=7.1e-11 Score=73.32 Aligned_cols=70 Identities=23% Similarity=0.465 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcCCC
Q 034012 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 97 (106)
Q Consensus 23 ~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 97 (106)
....+..+|+.||++++|+|+..|+..+++.+ +.+++..++..+ +...|.+++|.|++++|+.++.....
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~l-g~~~t~~el~~~----~~~~D~dg~g~I~~~eF~~l~~~~~~ 75 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSL-GQNPTEEELRDL----IKEIDLDGDGTIDFEEFLDLMEKLGE 75 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHH----HHHhCCCCCCeEcHHHHHHHHHhhhc
Confidence 34678999999999999999999999999997 999999998888 79999999999999999999876543
No 22
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.21 E-value=1.4e-10 Score=62.21 Aligned_cols=61 Identities=21% Similarity=0.281 Sum_probs=52.3
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcC
Q 034012 28 QLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 95 (106)
Q Consensus 28 ~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 95 (106)
+.+|+.+|++++|.|+.+|++.++... + .+.++++.+ +..+|.+++|.|+|++|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-g--~~~~~~~~i----~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-G--LPRSVLAQI----WDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-C--CCHHHHHHH----HHHhcCCCCCcCCHHHHHHHHHHH
Confidence 468999999999999999999999885 5 366666665 799999999999999999987643
No 23
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.20 E-value=1.2e-10 Score=74.88 Aligned_cols=87 Identities=20% Similarity=0.389 Sum_probs=73.8
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~ 82 (106)
+.++-++|..+++.+.|.+.+..-...+|+.||++++|.|+..|+...+..++.. +.+ +.+...|+.+|.+++|.
T Consensus 42 G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG--t~e---ekl~w~F~lyD~dgdG~ 116 (193)
T KOG0044|consen 42 GRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG--TLE---EKLKWAFRLYDLDGDGY 116 (193)
T ss_pred CccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC--cHH---HHhhhhheeecCCCCce
Confidence 4688899999999999888999999999999999999999999988888876332 222 33444599999999999
Q ss_pred ccHHHHHHHHhc
Q 034012 83 LTLGDFIKVFGN 94 (106)
Q Consensus 83 I~~~ef~~~l~~ 94 (106)
|+++|++.+++.
T Consensus 117 It~~Eml~iv~~ 128 (193)
T KOG0044|consen 117 ITKEEMLKIVQA 128 (193)
T ss_pred EcHHHHHHHHHH
Confidence 999999998765
No 24
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.19 E-value=1.6e-10 Score=59.87 Aligned_cols=52 Identities=23% Similarity=0.534 Sum_probs=46.7
Q ss_pred CCCceeHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 38 CNGKVSFNDILEVLRDLSGSF-MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~-l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
.+|.|+.++|+.++..+ |.. ++++++..+ +..+|.+++|+|+|+||+.++.+
T Consensus 1 ~~G~i~~~~~~~~l~~~-g~~~~s~~e~~~l----~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKL-GIKDLSEEEVDRL----FREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHT-TSSSSCHHHHHHH----HHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHh-CCCCCCHHHHHHH----HHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999765 888 999997777 89999999999999999998864
No 25
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.18 E-value=2.2e-10 Score=59.70 Aligned_cols=61 Identities=20% Similarity=0.538 Sum_probs=54.5
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 034012 27 VQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92 (106)
Q Consensus 27 ~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 92 (106)
+..+|+.+|.+++|.|+.+++..++..+ +...+.+.+..+ +..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~~----~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL-GEGLSEEEIDEM----IREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHH----HHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999997 888887776665 799999999999999998765
No 26
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.16 E-value=4.6e-10 Score=64.05 Aligned_cols=68 Identities=13% Similarity=0.260 Sum_probs=55.0
Q ss_pred HHHHHHHHHHh-hcCCCCC-ceeHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 23 MQQKVQLIFKV-YDSDCNG-KVSFNDILEVLRDLS----GSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 23 ~~~~~~~~F~~-~D~d~~g-~i~~~el~~~l~~~~----~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
....+..+|+. +|++++| +|+.+||+.++.... +...++.+++++ ++.+|.++||.|+|+||+.++..
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~l----l~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRM----MKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHH----HHHcCCCCCCcCcHHHHHHHHHH
Confidence 34678999999 6788876 999999999999742 234455666665 79999999999999999998765
No 27
>PTZ00183 centrin; Provisional
Probab=99.12 E-value=2.2e-09 Score=66.31 Aligned_cols=89 Identities=15% Similarity=0.284 Sum_probs=69.5
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~ 82 (106)
+.|++.||..++.... .......+..+|+.+|++++|.|++.++..++..........+.+ ..+|+.+|.+++|.
T Consensus 32 G~i~~~e~~~~l~~~g-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l----~~~F~~~D~~~~G~ 106 (158)
T PTZ00183 32 GTIDPKELKVAMRSLG-FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEI----LKAFRLFDDDKTGK 106 (158)
T ss_pred CcccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHH----HHHHHHhCCCCCCc
Confidence 4689999998887652 334456789999999999999999999999887643444444444 44489999999999
Q ss_pred ccHHHHHHHHhcCC
Q 034012 83 LTLGDFIKVFGNSG 96 (106)
Q Consensus 83 I~~~ef~~~l~~~~ 96 (106)
|+..+|..++...+
T Consensus 107 i~~~e~~~~l~~~~ 120 (158)
T PTZ00183 107 ISLKNLKRVAKELG 120 (158)
T ss_pred CcHHHHHHHHHHhC
Confidence 99999999887543
No 28
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.09 E-value=9.6e-10 Score=65.54 Aligned_cols=62 Identities=19% Similarity=0.452 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 24 ~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
..++..+|..+|.|++|+|+.+|+..+. + .. . +..+..++..+|.|+||+||++||...+..
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l-~~--~----e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--L-DP--N----EHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--c-cc--h----HHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 4678999999999999999999999876 2 21 2 344455689999999999999999998843
No 29
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.07 E-value=3.9e-09 Score=65.96 Aligned_cols=85 Identities=18% Similarity=0.289 Sum_probs=37.7
Q ss_pred ccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCccc
Q 034012 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLT 84 (106)
Q Consensus 5 i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~ 84 (106)
|++.++..+++. .+...+...+..+|..+|. ++|.|+..+|..++...+...-+.+++... |+.+|.+++|+|+
T Consensus 37 I~~~el~~ilr~-lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~a----F~~fD~d~dG~Is 110 (160)
T COG5126 37 IDRNELGKILRS-LGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREA----FKLFDKDHDGYIS 110 (160)
T ss_pred CcHHHHHHHHHH-cCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHH----HHHhCCCCCceec
Confidence 344444444432 2233344444444444444 444444444444444332222223333332 5666666666666
Q ss_pred HHHHHHHHhcC
Q 034012 85 LGDFIKVFGNS 95 (106)
Q Consensus 85 ~~ef~~~l~~~ 95 (106)
..++..+++..
T Consensus 111 ~~eL~~vl~~l 121 (160)
T COG5126 111 IGELRRVLKSL 121 (160)
T ss_pred HHHHHHHHHhh
Confidence 66666655543
No 30
>PTZ00184 calmodulin; Provisional
Probab=99.05 E-value=4.5e-09 Score=64.17 Aligned_cols=88 Identities=16% Similarity=0.314 Sum_probs=67.3
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~ 82 (106)
+.|++.+|..++..+. .....+.+..+|+.+|.+++|.|+++++..++..........+. +..+|..+|.+++|.
T Consensus 26 G~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~----~~~~F~~~D~~~~g~ 100 (149)
T PTZ00184 26 GTITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEE----IKEAFKVFDRDGNGF 100 (149)
T ss_pred CcCCHHHHHHHHHHhC-CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHH----HHHHHHhhCCCCCCe
Confidence 4689999998887653 33345688999999999999999999999888764233333333 344589999999999
Q ss_pred ccHHHHHHHHhcC
Q 034012 83 LTLGDFIKVFGNS 95 (106)
Q Consensus 83 I~~~ef~~~l~~~ 95 (106)
|+.++|..++...
T Consensus 101 i~~~e~~~~l~~~ 113 (149)
T PTZ00184 101 ISAAELRHVMTNL 113 (149)
T ss_pred EeHHHHHHHHHHH
Confidence 9999998888654
No 31
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.01 E-value=2.2e-09 Score=61.05 Aligned_cols=68 Identities=12% Similarity=0.289 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhcCC--CCCceeHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcC
Q 034012 24 QQKVQLIFKVYDSD--CNGKVSFNDILEVLRDLSGSFMS----DEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 95 (106)
Q Consensus 24 ~~~~~~~F~~~D~d--~~g~i~~~el~~~l~~~~~~~l~----~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 95 (106)
...+...|+.|+.+ .+|+|+.+||+.++....+..++ ++++..+ |..+|.+++|.|+|++|+.++...
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i----~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKI----FEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHH----HHHcCCCCCCcCcHHHHHHHHHHH
Confidence 35678899999855 58999999999999754365565 6666665 899999999999999999988653
No 32
>PF14658 EF-hand_9: EF-hand domain
Probab=99.00 E-value=3.3e-09 Score=56.82 Aligned_cols=61 Identities=13% Similarity=0.367 Sum_probs=55.2
Q ss_pred HHHHhhcCCCCCceeHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhcCCCC-CcccHHHHHHHHhc
Q 034012 29 LIFKVYDSDCNGKVSFNDILEVLRDLSGS-FMSDEQREQVLTQVFKDAGYTRD-SYLTLGDFIKVFGN 94 (106)
Q Consensus 29 ~~F~~~D~d~~g~i~~~el~~~l~~~~~~-~l~~~~~~~~~~~~~~~~d~~~~-g~I~~~ef~~~l~~ 94 (106)
.+|..||+++.|.|....++.+|+.+ +. ..++.+++.+ ..++|+++. |.|+++.|+.+++.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~-~~~~p~e~~Lq~l----~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAV-TGRSPEESELQDL----INELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHH-cCCCCcHHHHHHH----HHHhCCCCCCceEeHHHHHHHHHH
Confidence 47999999999999999999999998 65 8888888888 699999998 99999999998864
No 33
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.89 E-value=1.7e-08 Score=70.78 Aligned_cols=83 Identities=22% Similarity=0.372 Sum_probs=73.6
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~ 82 (106)
.++||+||...+... +.++...|+..|.+.||.|+.+|+...+..+ +.++++++++++ ++..|+++++.
T Consensus 66 g~vDy~eF~~Y~~~~------E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-gi~l~de~~~k~----~e~~d~~g~~~ 134 (463)
T KOG0036|consen 66 GRVDYSEFKRYLDNK------ELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-GIQLSDEKAAKF----FEHMDKDGKAT 134 (463)
T ss_pred CcccHHHHHHHHHHh------HHHHHHHHhhhccccCCccCHHHHHHHHHHh-CCccCHHHHHHH----HHHhccCCCee
Confidence 478999999987653 4789999999999999999999999999997 999999998886 79999999999
Q ss_pred ccHHHHHHHHhcCC
Q 034012 83 LTLGDFIKVFGNSG 96 (106)
Q Consensus 83 I~~~ef~~~l~~~~ 96 (106)
|+++|+...+...+
T Consensus 135 I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 135 IDLEEWRDHLLLYP 148 (463)
T ss_pred eccHHHHhhhhcCC
Confidence 99999988765543
No 34
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=1e-07 Score=59.21 Aligned_cols=87 Identities=11% Similarity=0.232 Sum_probs=53.8
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~ 82 (106)
+.|+++|+..++..+- .....+.+..+-.-+|++++|+|+.++|+..+...++..-+.+++... |+..|.+++|+
T Consensus 48 g~iD~~EL~vAmralG-FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a----frl~D~D~~Gk 122 (172)
T KOG0028|consen 48 GKIDVEELKVAMRALG-FEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA----FRLFDDDKTGK 122 (172)
T ss_pred CcccHHHHHHHHHHcC-CCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH----HHcccccCCCC
Confidence 4566666655544432 344555666666666777777777777777766544555566665555 67677777777
Q ss_pred ccHHHHHHHHhc
Q 034012 83 LTLGDFIKVFGN 94 (106)
Q Consensus 83 I~~~ef~~~l~~ 94 (106)
||+.+|+.+...
T Consensus 123 is~~~lkrvake 134 (172)
T KOG0028|consen 123 ISQRNLKRVAKE 134 (172)
T ss_pred cCHHHHHHHHHH
Confidence 777766665443
No 35
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.81 E-value=1.1e-08 Score=46.42 Aligned_cols=29 Identities=28% Similarity=0.708 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 26 ~~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
.+..+|+.||+|++|+|+.+||..+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 36789999999999999999999999763
No 36
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.80 E-value=4.4e-08 Score=62.97 Aligned_cols=68 Identities=19% Similarity=0.401 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcC
Q 034012 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 95 (106)
Q Consensus 23 ~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 95 (106)
....+..+|..||.+.+|+|+..|++..|..+ |.+.+.--+..+ ++..|-+.+|+|||.+|+=+++..
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL-gapQTHL~lK~m----ikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKL-GAPQTHLGLKNM----IKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHh-CCchhhHHHHHH----HHHhhcccccchhHHHHHHHHHHH
Confidence 34567889999999999999999999999997 877765555555 799999999999999999888763
No 37
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.77 E-value=9.6e-08 Score=59.01 Aligned_cols=73 Identities=19% Similarity=0.309 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHH-----------------------------HHH
Q 034012 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLT-----------------------------QVF 72 (106)
Q Consensus 22 ~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~-----------------------------~~~ 72 (106)
+..++++.+|.+.|.|++|.|++++|+..+.++ |...+++++..++. .+|
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSl-Gk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF 107 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASL-GKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAF 107 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 455889999999999999999999999999997 88888777766543 257
Q ss_pred HHhcCCCCCcccHHHHHHHHhcC
Q 034012 73 KDAGYTRDSYLTLGDFIKVFGNS 95 (106)
Q Consensus 73 ~~~d~~~~g~I~~~ef~~~l~~~ 95 (106)
+.+|.+++|.|.-+.+..+|...
T Consensus 108 ~~FD~~~~G~I~~d~lre~Ltt~ 130 (171)
T KOG0031|consen 108 KTFDDEGSGKIDEDYLRELLTTM 130 (171)
T ss_pred HhcCccCCCccCHHHHHHHHHHh
Confidence 77777777777777777776653
No 38
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.72 E-value=7.3e-08 Score=58.58 Aligned_cols=70 Identities=20% Similarity=0.345 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCC--CCCcccHHHHHHHHhc
Q 034012 20 KASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYT--RDSYLTLGDFIKVFGN 94 (106)
Q Consensus 20 ~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~--~~g~I~~~ef~~~l~~ 94 (106)
...+.++++.+|..||..++|+|+......+++.+ |.++++.++.+.+ ...+.+ +-.+|+|++|+.+++.
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRal-G~nPT~aeV~k~l----~~~~~~~~~~~rl~FE~fLpm~q~ 77 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRAL-GQNPTNAEVLKVL----GQPKRREMNVKRLDFEEFLPMYQQ 77 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHh-cCCCcHHHHHHHH----cCcccchhhhhhhhHHHHHHHHHH
Confidence 34556899999999999999999999999999997 9999999987774 555544 3467888888888765
No 39
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.70 E-value=4.9e-08 Score=55.64 Aligned_cols=65 Identities=14% Similarity=0.260 Sum_probs=50.1
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLS----GSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 25 ~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~----~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
+.+...|+.|- .+.+.+++.||+.++..-+ +..-.+.. ++.+|+..|.|+||.|+|+||+.++..
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~----vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMA----VDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHH----HHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 56778899987 4567999999999998532 33333444 455589999999999999999998765
No 40
>PLN02964 phosphatidylserine decarboxylase
Probab=98.64 E-value=3.2e-07 Score=68.25 Aligned_cols=64 Identities=20% Similarity=0.517 Sum_probs=57.7
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcC
Q 034012 27 VQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 95 (106)
Q Consensus 27 ~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 95 (106)
+..+|+.+|.+++|.|+.+||..++..+ +...+++++..+ |+.+|.+++|.|+++||..++...
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~l-g~~~seEEL~ea----Fk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAF-GNLVAANKKEEL----FKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHh-ccCCCHHHHHHH----HHHhCCCCCCcCCHHHHHHHHHhc
Confidence 7999999999999999999999999986 777777776666 899999999999999999988773
No 41
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.58 E-value=1.4e-07 Score=43.30 Aligned_cols=29 Identities=31% Similarity=0.729 Sum_probs=25.3
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHH-Hh
Q 034012 26 KVQLIFKVYDSDCNGKVSFNDILEVLR-DL 54 (106)
Q Consensus 26 ~~~~~F~~~D~d~~g~i~~~el~~~l~-~~ 54 (106)
+++.+|+.||+|++|+|+.+||+.+++ .+
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~l 30 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSL 30 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhc
Confidence 467899999999999999999999998 44
No 42
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.57 E-value=3.6e-07 Score=47.05 Aligned_cols=50 Identities=20% Similarity=0.474 Sum_probs=42.1
Q ss_pred CcccHHHHHHHHhhhccCC-CHHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 034012 3 DGLNFKDFVAFLSVFSAKA-SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRD 53 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~-~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~ 53 (106)
+.|+.++|..++..+ ... ...+.+..+|..+|.+++|+|+++||...+..
T Consensus 3 G~i~~~~~~~~l~~~-g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 3 GKITREEFRRALSKL-GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SEEEHHHHHHHHHHT-TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHh-CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 468999999999554 234 55667999999999999999999999998864
No 43
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.54 E-value=1.1e-06 Score=57.12 Aligned_cols=89 Identities=13% Similarity=0.262 Sum_probs=70.0
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~ 82 (106)
++|+=+|...++..-....-..+.++.+-.+||.+.+|+|..+||+.+.+.+ .-+..+|+..|.++.|.
T Consensus 72 g~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-----------~~Wr~vF~~~D~D~SG~ 140 (221)
T KOG0037|consen 72 GRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-----------NQWRNVFRTYDRDRSGT 140 (221)
T ss_pred ccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-----------HHHHHHHHhcccCCCCc
Confidence 3566667777766422233345788999999999999999999999988886 22567799999999999
Q ss_pred ccHHHHHHHHhcCCCceeee
Q 034012 83 LTLGDFIKVFGNSGLKMEVE 102 (106)
Q Consensus 83 I~~~ef~~~l~~~~~~~~~~ 102 (106)
|+..|+.+++...+.+++.+
T Consensus 141 I~~sEL~~Al~~~Gy~Lspq 160 (221)
T KOG0037|consen 141 IDSSELRQALTQLGYRLSPQ 160 (221)
T ss_pred ccHHHHHHHHHHcCcCCCHH
Confidence 99999999999988877643
No 44
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=1.1e-06 Score=52.01 Aligned_cols=71 Identities=21% Similarity=0.350 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhc-----C----CCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 034012 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLS-----G----SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92 (106)
Q Consensus 22 ~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~-----~----~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 92 (106)
.+++.-.-.|.++|-|+||.++.-|+...++..- | +-.++.+++++++.+++.-|.|+||.|+|.||+...
T Consensus 64 tpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 64 TPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred CHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 3444455689999999999999999999988531 1 234578899999999999999999999999998753
No 45
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.43 E-value=1.6e-06 Score=61.43 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=49.0
Q ss_pred ccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 18 SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 18 ~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
.+.......+..+|+.+|.+++|+|+.+|+.. ++.+|..+|.+++|.|+++||...+..
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLG------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHH------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 34455678899999999999999999999841 233489999999999999999998754
No 46
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.40 E-value=1.8e-06 Score=61.52 Aligned_cols=69 Identities=20% Similarity=0.423 Sum_probs=57.7
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcCCC
Q 034012 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLS---GSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 97 (106)
Q Consensus 25 ~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~---~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 97 (106)
..+..+|+..|+|++|.|+.+||+.....+. +..++++++-++ .+.+|.|+||+|++.||+.+++-.+.
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~l----a~~mD~NkDG~IDlNEfLeAFrlvdr 618 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILEL----ARSMDLNKDGKIDLNEFLEAFRLVDR 618 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHH----HHhhccCCCCcccHHHHHHHHhhhcc
Confidence 4578899999999999999999999887542 457778877777 59999999999999999998765443
No 47
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.40 E-value=4.8e-07 Score=40.98 Aligned_cols=26 Identities=12% Similarity=0.356 Sum_probs=23.0
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 69 TQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 69 ~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
+.+|+.+|.|++|+|+++||..++++
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 44589999999999999999998864
No 48
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.30 E-value=3e-06 Score=59.77 Aligned_cols=72 Identities=19% Similarity=0.350 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcCCC
Q 034012 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 97 (106)
Q Consensus 22 ~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 97 (106)
..+-++..+|+.+|.+++|.++..++...+..+ +.+-++.+ +...++..+|.+.||.++|++|..++...+.
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l-~~~~~~~~---~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~ 82 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKL-DHPKPNYE---AAKMLFSAMDANRDGRVDYSEFKRYLDNKEL 82 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhc-CCCCCchH---HHHHHHHhcccCcCCcccHHHHHHHHHHhHH
Confidence 345678999999999999999999999999987 54423332 3333489999999999999999999888665
No 49
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.30 E-value=4.9e-06 Score=42.32 Aligned_cols=49 Identities=22% Similarity=0.419 Sum_probs=38.5
Q ss_pred ceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 41 KVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 41 ~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
+++.+|++.+++.+ +..+++..+..+ |..+|.+++|++..+||..+++.
T Consensus 1 kmsf~Evk~lLk~~-NI~~~~~yA~~L----Fq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMM-NIEMDDEYARQL----FQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHT-T----HHHHHHH----HHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-ccCcCHHHHHHH----HHHhcccCCCCccHHHHHHHHHH
Confidence 47899999999997 888888877666 89999999999999999998764
No 50
>PLN02964 phosphatidylserine decarboxylase
Probab=98.28 E-value=5.2e-06 Score=61.97 Aligned_cols=67 Identities=13% Similarity=0.232 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcC
Q 034012 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG-SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 95 (106)
Q Consensus 23 ~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~-~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 95 (106)
..+.+..+|..+|+|++|++ +..+++.+ + ...++++. ..++.+|..+|.+++|.|+++||+.++...
T Consensus 141 qi~elkeaF~lfD~dgdG~i----Lg~ilrsl-G~~~pte~e~-~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 141 EPESACESFDLLDPSSSNKV----VGSIFVSC-SIEDPVETER-SFARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred HHHHHHHHHHHHCCCCCCcC----HHHHHHHh-CCCCCCHHHH-HHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 44788999999999999997 88888886 7 47776652 224455899999999999999999988753
No 51
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.28 E-value=1.7e-06 Score=37.80 Aligned_cols=25 Identities=28% Similarity=0.678 Sum_probs=22.1
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHH
Q 034012 27 VQLIFKVYDSDCNGKVSFNDILEVL 51 (106)
Q Consensus 27 ~~~~F~~~D~d~~g~i~~~el~~~l 51 (106)
++..|+.+|.|++|.|+.+|+..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3568999999999999999999864
No 52
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.26 E-value=1.7e-05 Score=46.40 Aligned_cols=65 Identities=23% Similarity=0.296 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q 034012 21 ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 93 (106)
Q Consensus 21 ~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 93 (106)
....++...+|+..|+ .+|.|+..+.+.++.. .+++.+.+..+ |..+|.+++|+++++||+-+++
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~---S~L~~~~L~~I----W~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMK---SGLPRDVLAQI----WNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHH---TTSSHHHHHHH----HHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHH---cCCCHHHHHHH----HhhhcCCCCCcCCHHHHHHHHH
Confidence 4455788899999885 6899999999998876 36776666665 8999999999999999988554
No 53
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.24 E-value=1.8e-05 Score=50.87 Aligned_cols=83 Identities=17% Similarity=0.310 Sum_probs=62.9
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCc-eeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCC
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGK-VSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDS 81 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~-i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g 81 (106)
+.++.+||..+.... .++ -...+++.|+.+++|. |+++++...+..+ .++-+.. ..++-+|+-+|.+++|
T Consensus 49 g~lt~eef~~i~~~~---~Np--~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f-~~~~~~~---~Kl~faF~vYD~~~~G 119 (187)
T KOG0034|consen 49 GYLTKEEFLSIPELA---LNP--LADRIIDRFDTDGNGDPVDFEEFVRLLSVF-SPKASKR---EKLRFAFRVYDLDGDG 119 (187)
T ss_pred CccCHHHHHHHHHHh---cCc--HHHHHHHHHhccCCCCccCHHHHHHHHhhh-cCCccHH---HHHHHHHHHhcCCCCC
Confidence 467888888887442 222 3567788888888888 9999999999987 4444433 2334449999999999
Q ss_pred cccHHHHHHHHhc
Q 034012 82 YLTLGDFIKVFGN 94 (106)
Q Consensus 82 ~I~~~ef~~~l~~ 94 (106)
.|+.+++..++..
T Consensus 120 ~I~reel~~iv~~ 132 (187)
T KOG0034|consen 120 FISREELKQILRM 132 (187)
T ss_pred cCcHHHHHHHHHH
Confidence 9999999997765
No 54
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.24 E-value=2.1e-06 Score=60.89 Aligned_cols=48 Identities=23% Similarity=0.481 Sum_probs=42.6
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRD 53 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~ 53 (106)
+-|+|.||+-.+..+. .++..+..+|++||.|+||.|+.+||..+..-
T Consensus 214 GLIsfSdYiFLlTlLS---~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~l 261 (489)
T KOG2643|consen 214 GLISFSDYIFLLTLLS---IPERNFRIAFKMFDLDGNGEIDKEEFETVQQL 261 (489)
T ss_pred CeeeHHHHHHHHHHHc---cCcccceeeeeeeecCCCCcccHHHHHHHHHH
Confidence 4699999999988864 67788999999999999999999999998853
No 55
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.15 E-value=3.7e-06 Score=66.93 Aligned_cols=72 Identities=21% Similarity=0.451 Sum_probs=58.5
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcCCC
Q 034012 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMS---DEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 97 (106)
Q Consensus 25 ~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~---~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 97 (106)
..+..+|+.||++.+|+++.++|+.+++.+ |+.++ +.+.+.-.+.++...||+.+|+|+..+|+.++.+.+.
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrsl-gY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ET 2327 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSL-GYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKET 2327 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhc-CCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhccc
Confidence 467889999999999999999999999997 87773 2222333444589999999999999999998877544
No 56
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.12 E-value=6.7e-06 Score=43.83 Aligned_cols=49 Identities=18% Similarity=0.461 Sum_probs=39.2
Q ss_pred CcccHHHHHHHHhhhccC---CCHHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 034012 3 DGLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVL 51 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~---~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l 51 (106)
+.|+.+||..++..+... ....+.+..+|+.+|++++|.|+.+||..++
T Consensus 15 G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 15 GYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp SEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 468999999999986422 1234567778999999999999999998764
No 57
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=6.5e-06 Score=56.35 Aligned_cols=83 Identities=12% Similarity=0.271 Sum_probs=62.0
Q ss_pred CcccHHHHHHHHhhhccCCC-HH---HHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCC
Q 034012 3 DGLNFKDFVAFLSVFSAKAS-MQ---QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYT 78 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~-~~---~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~ 78 (106)
+.|+++||+.-+....+.+. ++ ..-...|..+|+|++|+++.+|++.++.-- +......++..+ +-++|.+
T Consensus 215 G~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~-~~d~A~~EA~hL----~~eaD~d 289 (325)
T KOG4223|consen 215 GKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPS-EQDHAKAEARHL----LHEADED 289 (325)
T ss_pred CceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCC-CccHHHHHHHHH----hhhhccC
Confidence 36899999998887543221 11 223466777899999999999999887543 455556666666 6889999
Q ss_pred CCCcccHHHHHH
Q 034012 79 RDSYLTLGDFIK 90 (106)
Q Consensus 79 ~~g~I~~~ef~~ 90 (106)
+||++|++|.+.
T Consensus 290 kD~kLs~eEIl~ 301 (325)
T KOG4223|consen 290 KDGKLSKEEILE 301 (325)
T ss_pred ccccccHHHHhh
Confidence 999999998765
No 58
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.99 E-value=3.1e-06 Score=50.30 Aligned_cols=61 Identities=16% Similarity=0.308 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 034012 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (106)
Q Consensus 23 ~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 90 (106)
....+...|..+|.++||.|+..|++.+...+.. .+.-+..++..+|.|+||.||..|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~-------~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMP-------PEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTST-------TGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhh-------hHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3467888999999999999999999987664411 123355568999999999999999864
No 59
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=9.9e-05 Score=50.71 Aligned_cols=81 Identities=11% Similarity=0.208 Sum_probs=62.2
Q ss_pred HHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHH
Q 034012 8 KDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGD 87 (106)
Q Consensus 8 ~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~e 87 (106)
.++......+. .....+++..++...|.+++|.|+..|++.++... -. ..+.+-+.+.+...|.+.||.|+|++
T Consensus 61 ~e~~~~fd~l~-~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s-~k----~~v~~~~~~~~~~~d~~~Dg~i~~ee 134 (325)
T KOG4223|consen 61 DEFADEFDQLT-PEESQERLGKLVPKIDSDSDGFVTESELKAWIMQS-QK----KYVVEEAARRWDEYDKNKDGFITWEE 134 (325)
T ss_pred hhhhhhhhhhC-cchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHH-HH----HHHHHHHHHHHHHhccCccceeeHHH
Confidence 55666666665 33477899999999999999999999999999875 22 22333344457999999999999999
Q ss_pred HHHHHhc
Q 034012 88 FIKVFGN 94 (106)
Q Consensus 88 f~~~l~~ 94 (106)
+....-.
T Consensus 135 y~~~~~~ 141 (325)
T KOG4223|consen 135 YLPQTYG 141 (325)
T ss_pred hhhhhhh
Confidence 9886553
No 60
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.92 E-value=2e-05 Score=34.34 Aligned_cols=23 Identities=13% Similarity=0.381 Sum_probs=20.2
Q ss_pred HHHHHhcCCCCCcccHHHHHHHH
Q 034012 70 QVFKDAGYTRDSYLTLGDFIKVF 92 (106)
Q Consensus 70 ~~~~~~d~~~~g~I~~~ef~~~l 92 (106)
.+|..+|.|+||.|+++||.+++
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHC
Confidence 45899999999999999998753
No 61
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.86 E-value=0.0001 Score=37.69 Aligned_cols=48 Identities=19% Similarity=0.443 Sum_probs=40.9
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVL 51 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l 51 (106)
+.|++.+|..++.... .....+.+..+|+.+|.+++|.|+.+++..++
T Consensus 15 g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 15 GTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred CcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 3689999999998864 55566788899999999999999999998765
No 62
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.83 E-value=0.00016 Score=36.82 Aligned_cols=50 Identities=16% Similarity=0.324 Sum_probs=39.3
Q ss_pred cccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 4 ~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
+++|.|....+..+. -.-.++-+..+|+..|++++|.+..+|+..+.+.+
T Consensus 1 kmsf~Evk~lLk~~N-I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMN-IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 468899988888864 45566788999999999999999999999988764
No 63
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.76 E-value=0.00016 Score=52.70 Aligned_cols=67 Identities=15% Similarity=0.328 Sum_probs=54.0
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 25 ~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
..++..|...| +++|+++..++..++... +... ....++.++.++...+.+.+|+|+|++|+.++.+
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~-~~~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKA-KLPL-GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHh-cccc-cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 46788999999 999999999999999985 4443 3334455555589999999999999999996654
No 64
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.70 E-value=0.00015 Score=41.35 Aligned_cols=52 Identities=19% Similarity=0.334 Sum_probs=42.2
Q ss_pred CcccHHHHHHHHhhhccCCCHH-HHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQ-QKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~-~~~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
+.|+..|+..++..-.+..-.. +.+..+++..|.|++|.|+++||...+..+
T Consensus 24 g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 24 ESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred CeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3688999999998822222223 789999999999999999999999998875
No 65
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.69 E-value=0.00011 Score=50.85 Aligned_cols=86 Identities=15% Similarity=0.194 Sum_probs=69.6
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~ 82 (106)
+.++|-|+...++.++.-....+.++.+|++|+-+.+|.+...+|..++...+|... -. +...|...+...+|+
T Consensus 274 g~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~--l~----v~~lf~~i~q~d~~k 347 (412)
T KOG4666|consen 274 GNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEV--LR----VPVLFPSIEQKDDPK 347 (412)
T ss_pred CcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcce--ee----ccccchhhhcccCcc
Confidence 468999999999999866677789999999999999999999999999987545321 11 222378888989999
Q ss_pred ccHHHHHHHHhc
Q 034012 83 LTLGDFIKVFGN 94 (106)
Q Consensus 83 I~~~ef~~~l~~ 94 (106)
|+|++|..+...
T Consensus 348 i~~~~f~~fa~~ 359 (412)
T KOG4666|consen 348 IYASNFRKFAAT 359 (412)
T ss_pred eeHHHHHHHHHh
Confidence 999999886554
No 66
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.67 E-value=0.00041 Score=50.49 Aligned_cols=88 Identities=22% Similarity=0.423 Sum_probs=63.5
Q ss_pred cccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhc-C----CCCCHH----------------
Q 034012 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLS-G----SFMSDE---------------- 62 (106)
Q Consensus 4 ~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~-~----~~l~~~---------------- 62 (106)
-|+|+||++.=..+| .++.....+|+.||+.++|.++.+++..++.+.- . -+++.+
T Consensus 90 lisf~eF~afe~~lC---~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny 166 (694)
T KOG0751|consen 90 LISFQEFRAFESVLC---APDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNY 166 (694)
T ss_pred cccHHHHHHHHhhcc---CchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccH
Confidence 589999999988887 5678899999999999999999999999998531 1 112211
Q ss_pred ---------HHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 63 ---------QREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 63 ---------~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
-..+-..+.|++-|..++|.|+--+|..++..
T Consensus 167 ~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt 207 (694)
T KOG0751|consen 167 AEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVT 207 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhh
Confidence 11222344577777888887777777665543
No 67
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.65 E-value=0.00018 Score=40.78 Aligned_cols=52 Identities=23% Similarity=0.368 Sum_probs=41.8
Q ss_pred CcccHHHHHHHHhhhccCCC----HHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 3 DGLNFKDFVAFLSVFSAKAS----MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~----~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
..|+.+|+..++....+... ..+.+..+|+.+|.+++|.|+++||..++..+
T Consensus 25 ~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 25 DTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred ccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 36899999999974322222 26889999999999999999999999888764
No 68
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.62 E-value=0.00034 Score=39.68 Aligned_cols=52 Identities=13% Similarity=0.244 Sum_probs=42.8
Q ss_pred CcccHHHHHHHHhhh--ccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 3 DGLNFKDFVAFLSVF--SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~--~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
+.|+.+||..++... .......+.+..+++..|.|++|.|+++||..++..+
T Consensus 27 g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 27 NTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred CEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 378999999999742 2233466899999999999999999999999888765
No 69
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.61 E-value=0.00012 Score=33.33 Aligned_cols=25 Identities=12% Similarity=0.317 Sum_probs=21.6
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHh
Q 034012 69 TQVFKDAGYTRDSYLTLGDFIKVFG 93 (106)
Q Consensus 69 ~~~~~~~d~~~~g~I~~~ef~~~l~ 93 (106)
..+|..+|.+++|.|+.+||.++++
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 3458999999999999999999987
No 70
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.57 E-value=0.00027 Score=50.71 Aligned_cols=84 Identities=19% Similarity=0.309 Sum_probs=66.0
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHHHh
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLS-------GSFMSDEQREQVLTQVFKDA 75 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~-------~~~l~~~~~~~~~~~~~~~~ 75 (106)
++++|++|+-++-... ..+....+..-|+..|-+++|.++.+|++-+..... ...++ ++.++.+++.-.
T Consensus 330 GrmdykdFv~FilA~e-~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~---fed~l~qi~DMv 405 (493)
T KOG2562|consen 330 GRMDYKDFVDFILAEE-DKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALP---FEDALCQIRDMV 405 (493)
T ss_pred CcccHHHHHHHHHHhc-cCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCccc---HHHHHHHHHHHh
Confidence 4689999999887765 555567899999999999999999999988876421 12333 456666667888
Q ss_pred cCCCCCcccHHHHHH
Q 034012 76 GYTRDSYLTLGDFIK 90 (106)
Q Consensus 76 d~~~~g~I~~~ef~~ 90 (106)
.+...++|+.++|..
T Consensus 406 kP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 406 KPEDENKITLQDLKG 420 (493)
T ss_pred CccCCCceeHHHHhh
Confidence 778899999999987
No 71
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.55 E-value=0.00042 Score=39.66 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=42.1
Q ss_pred cccHHHHHHHHhhhc----cCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 4 GLNFKDFVAFLSVFS----AKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 4 ~i~~~eF~~~~~~~~----~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
+|+..|+..++.... ........+..+++.+|.+++|.|+++||..++..+
T Consensus 28 ~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 28 KLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred EECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 489999999997632 122355789999999999999999999999999875
No 72
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.0017 Score=46.55 Aligned_cols=82 Identities=21% Similarity=0.352 Sum_probs=61.5
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~ 82 (106)
+.+++++|+.++..+. ++-+..-|..+|+..+|.|+..+|..++-...+.+. +....+..++-+.++.. +..
T Consensus 301 ~kLs~deF~~F~e~Lq-----~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~--~~k~~~lkrvk~kf~~~-~~g 372 (489)
T KOG2643|consen 301 GKLSIDEFLKFQENLQ-----EEILELEFERFDKGDSGAISEVDFAELLLAYAGVNS--KKKHKYLKRVKEKFKDD-GKG 372 (489)
T ss_pred ccccHHHHHHHHHHHH-----HHHHHHHHHHhCcccccccCHHHHHHHHHHHcccch--HhHHHHHHHHHHhccCC-CCC
Confidence 4789999999997763 466788899999999999999999999877533332 33344555666777554 556
Q ss_pred ccHHHHHHHH
Q 034012 83 LTLGDFIKVF 92 (106)
Q Consensus 83 I~~~ef~~~l 92 (106)
||++||.++.
T Consensus 373 ISl~Ef~~Ff 382 (489)
T KOG2643|consen 373 ISLQEFKAFF 382 (489)
T ss_pred cCHHHHHHHH
Confidence 9999987754
No 73
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.54 E-value=0.00046 Score=39.27 Aligned_cols=51 Identities=20% Similarity=0.412 Sum_probs=42.5
Q ss_pred cccHHHHHHHHhhhcc----CCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 4 GLNFKDFVAFLSVFSA----KASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 4 ~i~~~eF~~~~~~~~~----~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
.|+.+||..++....| .......+..+++.+|.|++|.|+++||..++..+
T Consensus 27 ~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 27 QLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred eECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 6899999999988532 23445789999999999999999999999988875
No 74
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.50 E-value=9.7e-05 Score=49.37 Aligned_cols=67 Identities=13% Similarity=0.270 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 034012 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92 (106)
Q Consensus 24 ~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 92 (106)
.+++..+|...|-+.+|+|+..|+++++..-....+.+ ...--+..|+..|+++||.|+|+||.--+
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqe--ameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQE--AMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHH--HHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 36789999999999999999999999887521211111 11112334788899999999999997633
No 75
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.47 E-value=0.00022 Score=30.65 Aligned_cols=27 Identities=26% Similarity=0.738 Sum_probs=24.2
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHH
Q 034012 27 VQLIFKVYDSDCNGKVSFNDILEVLRD 53 (106)
Q Consensus 27 ~~~~F~~~D~d~~g~i~~~el~~~l~~ 53 (106)
+..+|+.+|.+++|.|+..++..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999988864
No 76
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.46 E-value=0.00078 Score=35.50 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=41.4
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
+.|+.+|+..++... +.+.+.+..+|+.+|.+++|.|+.+|+..++..+
T Consensus 14 G~i~~~el~~~l~~~---g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 14 GLISGDEARPFLGKS---GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred CcCcHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 368899999988774 3366789999999999999999999999888764
No 77
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.43 E-value=0.00073 Score=38.33 Aligned_cols=51 Identities=18% Similarity=0.365 Sum_probs=42.4
Q ss_pred cccHHHHHHHHhh----hccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 4 GLNFKDFVAFLSV----FSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 4 ~i~~~eF~~~~~~----~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
.|+..|+..++.. +.+....++.+..+++..|+|++|.|+++||..++..+
T Consensus 26 ~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 26 KLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred EECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4899999999988 23244556779999999999999999999999888764
No 78
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.43 E-value=0.0019 Score=35.95 Aligned_cols=69 Identities=22% Similarity=0.357 Sum_probs=51.9
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcCC
Q 034012 27 VQLIFKVYDSDCNGKVSFNDILEVLRDLSGS-FMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSG 96 (106)
Q Consensus 27 ~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~-~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 96 (106)
+..+|+.|-. +.+.++.++|..+|+.-=+. .++.+++..++.+.-........+.+++++|..+|.+..
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 6788999954 88999999999999863122 467888888876633333333578999999999998764
No 79
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.35 E-value=0.0011 Score=37.89 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=42.3
Q ss_pred CcccHHHHHHHHhhhc----cCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 3 DGLNFKDFVAFLSVFS----AKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~----~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
+.|+..|+..++.... ......+.+..+++.+|.+++|.|+++||..++...
T Consensus 25 G~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 25 NTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred CeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3689999999887521 123456789999999999999999999999888764
No 80
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.34 E-value=0.0013 Score=37.56 Aligned_cols=51 Identities=25% Similarity=0.353 Sum_probs=41.6
Q ss_pred cccHHHHHHHHhh----hccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 4 GLNFKDFVAFLSV----FSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 4 ~i~~~eF~~~~~~----~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
+++..||...+.. +.+.....+.+..+++..|.|++|.|++.||..++..+
T Consensus 23 tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 23 YLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred cCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 5788888888855 23344455789999999999999999999999999875
No 81
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.30 E-value=0.0012 Score=37.12 Aligned_cols=52 Identities=27% Similarity=0.382 Sum_probs=41.6
Q ss_pred CcccHHHHHHHHhhhccC----CCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 3 DGLNFKDFVAFLSVFSAK----ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~----~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
+.|+..++..++....+. ....+.+..+++.+|.+++|.|++++|..++...
T Consensus 25 G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 25 DTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred CcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 368999999998753221 1236789999999999999999999999988764
No 82
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.23 E-value=0.0019 Score=36.72 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=41.6
Q ss_pred cccHHHHHHHHhh-h---ccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 4 GLNFKDFVAFLSV-F---SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 4 ~i~~~eF~~~~~~-~---~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
.|+..|+..++.. + .+.....+.+..+|+.+|.+++|.|++++|..++..+
T Consensus 27 ~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 27 KLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred eECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 4899999999865 2 1123456789999999999999999999999988875
No 83
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.23 E-value=0.0017 Score=37.16 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=41.5
Q ss_pred CcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
+.|+.+++..++... +-+.+.+..+|+.+|.+++|.|+.+||..++..+
T Consensus 25 G~Is~~el~~~l~~~---~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 25 GTVTGAQAKPILLKS---GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CeEeHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 368899999998773 3456789999999999999999999999988853
No 84
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.22 E-value=0.001 Score=47.90 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCC-------------------------------HHHH------
Q 034012 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMS-------------------------------DEQR------ 64 (106)
Q Consensus 22 ~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~-------------------------------~~~~------ 64 (106)
+....+...|+.+|.+.+|+|+......++..+.+.+++ .+++
T Consensus 461 s~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slve 540 (631)
T KOG0377|consen 461 SHRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVE 540 (631)
T ss_pred hhhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHH
Confidence 334678889999999999999999999999876553332 1111
Q ss_pred -----HHHHHHHHHHhcCCCCCcccHHHHHHHHhcCCCce
Q 034012 65 -----EQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGLKM 99 (106)
Q Consensus 65 -----~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~~~ 99 (106)
..-++.+|..+|.++.|.|+.+||.+++.-.+..+
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~ 580 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHM 580 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhc
Confidence 11234468999999999999999999886554443
No 85
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.05 E-value=0.0013 Score=28.00 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=21.8
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 70 QVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 70 ~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
.+|..+|.+++|.|++.+|..+++.
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 4489999999999999999998764
No 86
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.00 E-value=0.0022 Score=43.04 Aligned_cols=89 Identities=15% Similarity=0.194 Sum_probs=60.8
Q ss_pred ccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh----cCCCCCHHHHHHHHHHHHHHhcCCCC
Q 034012 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL----SGSFMSDEQREQVLTQVFKDAGYTRD 80 (106)
Q Consensus 5 i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~----~~~~l~~~~~~~~~~~~~~~~d~~~~ 80 (106)
++-.||+.++---...+....-++.+.+.+|+|++..++..||....-.- -++.+.+..++.-...+=..+|.|+|
T Consensus 216 lteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhD 295 (362)
T KOG4251|consen 216 LTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHD 295 (362)
T ss_pred hhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCc
Confidence 34567776654322234455678899999999999999999987654211 13455555555554444566799999
Q ss_pred CcccHHHHHHHHh
Q 034012 81 SYLTLGDFIKVFG 93 (106)
Q Consensus 81 g~I~~~ef~~~l~ 93 (106)
|.++++|+..++.
T Consensus 296 GivTaeELe~y~d 308 (362)
T KOG4251|consen 296 GIVTAEELEDYVD 308 (362)
T ss_pred cceeHHHHHhhcC
Confidence 9999999887753
No 87
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.86 E-value=0.0045 Score=36.92 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=35.5
Q ss_pred cccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHH
Q 034012 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVL 51 (106)
Q Consensus 4 ~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l 51 (106)
.|+..|...+. ....+..+...|..+|.|++|.||.+|+...+
T Consensus 64 ~Ls~~EL~~~~-----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 64 KLSHHELAPIR-----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred cCCHHHHHHHH-----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 57788887665 23446678889999999999999999999988
No 88
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.61 E-value=0.0097 Score=33.94 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcCCC
Q 034012 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLS------GSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 97 (106)
Q Consensus 24 ~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~------~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 97 (106)
.+|.+.+|+.+ .|.+|.++..-+..+++..+ +...+=..++..+...|... .....|+-.+|+.++...+-
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq 78 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQ 78 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--T
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCC
Confidence 47889999999 69999999999999888532 32222111555565557765 35678999999999888654
No 89
>PLN02952 phosphoinositide phospholipase C
Probab=96.33 E-value=0.1 Score=39.32 Aligned_cols=93 Identities=16% Similarity=0.208 Sum_probs=65.2
Q ss_pred CcccHHHHHHHHhhhcc-CCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhc---C
Q 034012 3 DGLNFKDFVAFLSVFSA-KASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGS-FMSDEQREQVLTQVFKDAG---Y 77 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~-~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~-~l~~~~~~~~~~~~~~~~d---~ 77 (106)
+.++|++|.++...+.. ...+...+..+|..|-. +.+.++.++|..+|...=+. ..+.+.++.++..++.... .
T Consensus 15 g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~ 93 (599)
T PLN02952 15 GSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTR 93 (599)
T ss_pred CCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccccc
Confidence 47899999988887642 22356789999999964 44689999999999975222 3566777777655443322 1
Q ss_pred CCCCcccHHHHHHHHhcCC
Q 034012 78 TRDSYLTLGDFIKVFGNSG 96 (106)
Q Consensus 78 ~~~g~I~~~ef~~~l~~~~ 96 (106)
.+.+.++++.|..++.+.+
T Consensus 94 ~~~~~l~~~~F~~~l~s~~ 112 (599)
T PLN02952 94 YTRHGLNLDDFFHFLLYDD 112 (599)
T ss_pred ccccCcCHHHHHHHHcCcc
Confidence 2334689999999987653
No 90
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=96.32 E-value=0.0029 Score=44.00 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=50.0
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 26 ~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
.+...|..+|++.++.|...|++-+=..+ . ....+.+-..++++.+|.|+|.+||++|+...+..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l-~---k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVL-L---KKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHH-H---hhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 56889999999999999999866554433 1 11124555666799999999999999999987754
No 91
>PF14658 EF-hand_9: EF-hand domain
Probab=96.31 E-value=0.036 Score=29.78 Aligned_cols=50 Identities=20% Similarity=0.512 Sum_probs=39.5
Q ss_pred cccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCC-CceeHHHHHHHHHH
Q 034012 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCN-GKVSFNDILEVLRD 53 (106)
Q Consensus 4 ~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~-g~i~~~el~~~l~~ 53 (106)
.|.-.+....+.........+.++..+-+.+|+++. |.|+.++|..+|+.
T Consensus 14 ~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 14 RVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred eEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 444555666666654346778899999999999999 99999999999875
No 92
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.14 E-value=0.028 Score=32.87 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 20 KASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 20 ~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
.+-+.+.+..+|...|.+++|+++.+||..+++-+
T Consensus 38 S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 38 SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 45667899999999999999999999999988853
No 93
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.97 E-value=0.029 Score=42.17 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=54.7
Q ss_pred ccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCccc
Q 034012 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLT 84 (106)
Q Consensus 5 i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~ 84 (106)
|+|..|...+..+.|-.....-+..+|+.+|+.++|.++.+++...+..+.... +-+.+.-+++.+|++++ ...
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~-----~~ek~~l~y~lh~~p~~-~~d 608 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGD-----ALEKLKLLYKLHDPPAD-ELD 608 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhh-----HHHHHHHHHhhccCCcc-ccc
Confidence 677788888777665445556678999999999999999999999988762222 22334444777777776 544
Q ss_pred HHH
Q 034012 85 LGD 87 (106)
Q Consensus 85 ~~e 87 (106)
.++
T Consensus 609 ~e~ 611 (671)
T KOG4347|consen 609 REE 611 (671)
T ss_pred ccc
Confidence 443
No 94
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.44 E-value=0.035 Score=45.66 Aligned_cols=63 Identities=19% Similarity=0.335 Sum_probs=48.7
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcCCCc
Q 034012 30 IFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGLK 98 (106)
Q Consensus 30 ~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~~ 98 (106)
-|+-||+|+.|.|+..+|...+... ...+..+++-+ +.-+..+.+...+|++|+..++.+...
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~--k~ytqse~dfl----lscae~dend~~~y~dfv~rfhepakd 4124 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH--KHYTQSEIDFL----LSCAEADENDMFDYEDFVDRFHEPAKD 4124 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc--ccchhHHHHHH----HHhhccCccccccHHHHHHHhcCchhh
Confidence 5788999999999999999999873 45565555554 344556677889999999998875443
No 95
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=95.42 E-value=0.034 Score=39.80 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=25.3
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 27 VQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 27 ~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
+..+|+.+|.|++|.|+.+||+.++...
T Consensus 359 ~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 359 SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4778999999999999999999998864
No 96
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.35 E-value=0.03 Score=39.33 Aligned_cols=64 Identities=13% Similarity=0.280 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcCC
Q 034012 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSG 96 (106)
Q Consensus 24 ~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 96 (106)
...+..+|..+|.+.+|.++..|++.+-.. + -+.-++.+|..+|...||.|+-.|++..+....
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ld--k-------nE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELD--K-------NEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhcc--C-------chhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 467899999999999999999999976543 2 234455668999999999999999998776643
No 97
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.31 E-value=0.068 Score=40.92 Aligned_cols=71 Identities=23% Similarity=0.439 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcCCC
Q 034012 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 97 (106)
Q Consensus 22 ~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 97 (106)
.....+...|+..|++.+|.++..+...++..+ +..++...+..+ |++.+..+++++..++|.........
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~-n~~l~~~~~~~~----f~e~~~~~~~k~~~~~~~~~~~~~~~ 203 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQL-NVQLSESKARRL----FKESDNSQTGKLEEEEFVKFRKELTK 203 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHH-HHhhhHHHHHHH----HHHHHhhccceehHHHHHHHHHhhcc
Confidence 445678999999999999999999999999987 777776666666 78888889999999999887765443
No 98
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=95.30 E-value=0.069 Score=37.39 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=61.2
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcCCCceeeeec
Q 034012 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGLKMEVEVP 104 (106)
Q Consensus 25 ~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~ 104 (106)
+++.-.|-.||.+++|.+++.|-...+..+-++..++..++-. |+.++-..||.+.-.+|.-+++.....-.+.||
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~a----fk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~ 334 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYA----FKRFSVAEDGISGEHILSLILQVVLGVEVLRVP 334 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHH----HHhcccccccccchHHHHHHHHHhcCcceeecc
Confidence 6788899999999999999988887777665777776654444 899999999999988888888776556666665
Q ss_pred C
Q 034012 105 V 105 (106)
Q Consensus 105 ~ 105 (106)
.
T Consensus 335 ~ 335 (412)
T KOG4666|consen 335 V 335 (412)
T ss_pred c
Confidence 3
No 99
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=95.13 E-value=0.27 Score=36.47 Aligned_cols=87 Identities=17% Similarity=0.282 Sum_probs=48.4
Q ss_pred HHHHHHHHhhhccCCCHH-HHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccH
Q 034012 7 FKDFVAFLSVFSAKASMQ-QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTL 85 (106)
Q Consensus 7 ~~eF~~~~~~~~~~~~~~-~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~ 85 (106)
=++|+..+-.+....... +.++.+=..-|.-.+|.|+++||+.+-.-+ = .+ +.+...+|..+|..+.|.+|+
T Consensus 55 ~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~l-C---~p---Dal~~~aFqlFDr~~~~~vs~ 127 (694)
T KOG0751|consen 55 PEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVL-C---AP---DALFEVAFQLFDRLGNGEVSF 127 (694)
T ss_pred HHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhc-c---Cc---hHHHHHHHHHhcccCCCceeh
Confidence 345555544433222222 233333344466677777777776443322 1 11 222333477888888888888
Q ss_pred HHHHHHHhcCCCcee
Q 034012 86 GDFIKVFGNSGLKME 100 (106)
Q Consensus 86 ~ef~~~l~~~~~~~~ 100 (106)
+++..++.+..+..+
T Consensus 128 ~~~~~if~~t~l~~~ 142 (694)
T KOG0751|consen 128 EDVADIFGQTNLHHH 142 (694)
T ss_pred HHHHHHHhccccccC
Confidence 888888877665433
No 100
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=95.12 E-value=0.061 Score=39.12 Aligned_cols=57 Identities=16% Similarity=0.292 Sum_probs=41.3
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----HhcCCCCCcccHHHHHHHHhc
Q 034012 30 IFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFK----DAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 30 ~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~----~~d~~~~g~I~~~ef~~~l~~ 94 (106)
.|--+|+|++|.|+.++++..-.. .++ ..+++++|. ..-...+|+++|++|+.++..
T Consensus 283 kFweLD~Dhd~lidk~~L~ry~d~----tlt----~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA 343 (493)
T KOG2562|consen 283 KFWELDTDHDGLIDKEDLKRYGDH----TLT----ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILA 343 (493)
T ss_pred HHhhhccccccccCHHHHHHHhcc----chh----hHHHHHHHhhccccceeeecCcccHHHHHHHHHH
Confidence 377789999999999999876543 333 345555577 233446899999999986654
No 101
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.97 E-value=0.22 Score=31.11 Aligned_cols=64 Identities=9% Similarity=0.248 Sum_probs=43.0
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHH--hcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 27 VQLIFKVYDSDCNGKVSFNDILEVLRD--LSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 27 ~~~~F~~~D~d~~g~i~~~el~~~l~~--~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
+...|..|.+.+...++-..|..+++. +++..++...+.-+ |..+-..+..+|+|++|..+|..
T Consensus 4 ~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDii----F~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 4 VFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDII----FSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHH----HHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHH----HHHhhcCCCcccCHHHHHHHHHH
Confidence 344555556667778999999999995 33566777765555 77775566667999999988764
No 102
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.86 E-value=0.07 Score=39.91 Aligned_cols=65 Identities=15% Similarity=0.332 Sum_probs=56.2
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 25 ~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
...+..|+.+|.|+.|+++.+++..+|+.. +.+++.+..++. ..++|.+-.|.++..+|.++++.
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~-~~~~d~~~~~~~----l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSE-NVGWDEDRLHEE----LQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHh-cCCCCHHHHHHH----HHHHHHhhcceeeHHHHHHHHHH
Confidence 456788999999999999999999999997 789998877776 58888888999999999987764
No 103
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=0.12 Score=38.12 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=52.8
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcCCC
Q 034012 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 97 (106)
Q Consensus 25 ~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 97 (106)
+-...-|+-.-.|-+|.|+..--+.++.+ .++.-.++..+ |...|-+.||.+++.||+..++-.-+
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtK---Sklpi~ELshI----WeLsD~d~DGALtL~EFcAAfHLVVa 296 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTK---SKLPIEELSHI----WELSDVDRDGALTLSEFCAAFHLVVA 296 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhh---ccCchHHHHHH----HhhcccCccccccHHHHHhhHhheee
Confidence 44566788888999999999988888876 35665666665 89999999999999999998865433
No 104
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=0.072 Score=41.22 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 23 ~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
..-+...+|..+|+..+|+++...-+.+|-. ..++..++..+ |...|.++||+++-+||+=.+.-
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~q---S~Lpq~~LA~I----W~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQ---SGLPQNQLAHI----WTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHh---cCCchhhHhhh----eeeeccCCCCcccHHHHHHHHHH
Confidence 3456788999999999999999888888865 35665555555 78899999999999999865443
No 105
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=94.13 E-value=0.11 Score=32.43 Aligned_cols=61 Identities=21% Similarity=0.426 Sum_probs=44.1
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 30 IFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 30 ~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
+-..|-.|+.|.++.+++...+..+ ....+.+ -.+..+|+-+|-++|+.|.-+++...+.+
T Consensus 76 i~e~FSeDG~GnlsfddFlDmfSV~-sE~APrd---lK~~YAFkIYDfd~D~~i~~~DL~~~l~~ 136 (189)
T KOG0038|consen 76 ICEVFSEDGRGNLSFDDFLDMFSVF-SEMAPRD---LKAKYAFKIYDFDGDEFIGHDDLEKTLTS 136 (189)
T ss_pred HHHHhccCCCCcccHHHHHHHHHHH-HhhChHH---hhhhheeEEeecCCCCcccHHHHHHHHHH
Confidence 3345558999999999999998876 3322222 22333478889999999999988877655
No 106
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.91 E-value=0.19 Score=38.33 Aligned_cols=85 Identities=18% Similarity=0.303 Sum_probs=65.3
Q ss_pred ccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHhcCCCCC
Q 034012 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLS---GSFMSDEQREQVLTQVFKDAGYTRDS 81 (106)
Q Consensus 5 i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~---~~~l~~~~~~~~~~~~~~~~d~~~~g 81 (106)
++++||. ....+.+.+++..|.++|. .+|.++.+++..++.... .......+..++...++...|.+..|
T Consensus 4 ~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (646)
T KOG0039|consen 4 ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKG 76 (646)
T ss_pred cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccc
Confidence 7888888 2366888999999999998 999999999999988532 12223455566666678999999999
Q ss_pred cccHHHHHHHHhcCC
Q 034012 82 YLTLGDFIKVFGNSG 96 (106)
Q Consensus 82 ~I~~~ef~~~l~~~~ 96 (106)
.+.++++...+....
T Consensus 77 y~~~~~~~~ll~~~~ 91 (646)
T KOG0039|consen 77 YITNEDLEILLLQIP 91 (646)
T ss_pred eeeecchhHHHHhch
Confidence 988888877766543
No 107
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.72 E-value=0.23 Score=34.70 Aligned_cols=69 Identities=17% Similarity=0.285 Sum_probs=50.2
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHHhc----CCCCCH-------HHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcCC
Q 034012 28 QLIFKVYDSDCNGKVSFNDILEVLRDLS----GSFMSD-------EQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSG 96 (106)
Q Consensus 28 ~~~F~~~D~d~~g~i~~~el~~~l~~~~----~~~l~~-------~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 96 (106)
+..|..+|-+++|.++..|+..++..-+ +++-.+ ++.-++-+-+|+..|.|.|.-|+.++|++.-.+..
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ke 326 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKE 326 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcc
Confidence 4578888999999999999998887422 222222 22334445578999999999999999998766543
No 108
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.43 E-value=0.37 Score=37.90 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcC
Q 034012 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSD-EQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 95 (106)
Q Consensus 24 ~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~-~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 95 (106)
.+++...|+.+++...|..+.+++...+..+ |++... ++...-+.++...-|+++.|.+++.+|...+.+.
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmsl-g~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSL-GYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhc-CcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 3689999999999999999999999999997 887765 3444444455666677778999999999988763
No 109
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=92.59 E-value=0.67 Score=29.60 Aligned_cols=63 Identities=22% Similarity=0.294 Sum_probs=45.7
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHhcCC-------------------------------------------------
Q 034012 27 VQLIFKVYDSDCNGKVSFNDILEVLRDLSGS------------------------------------------------- 57 (106)
Q Consensus 27 ~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~------------------------------------------------- 57 (106)
+..=...||.|++|.|.+-|--..++.+ |-
T Consensus 9 LQqHvaFFDrd~DGiI~P~dTy~GFraL-Gf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 9 LQQHVAFFDRDKDGIIYPWDTYQGFRAL-GFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HhhhhceeCCCCCeeECHHHHHHHHHHh-CCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 3444456899999999999977777654 31
Q ss_pred ----CCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 58 ----FMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 58 ----~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
...++..++ +|..++..+.+.+++.|...+++.
T Consensus 88 D~eGrFvp~kFe~----iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 88 DTEGRFVPQKFEE----IFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred ccCCcCCHHHHHH----HHHHhCCCCCCCcCHHHHHHHHHh
Confidence 111344444 489998888889999999998876
No 110
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=91.25 E-value=0.28 Score=36.88 Aligned_cols=62 Identities=18% Similarity=0.354 Sum_probs=45.1
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q 034012 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 93 (106)
Q Consensus 25 ~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 93 (106)
+-+..+|..||.|+||.++..|+..++...-+.+++...... ..-.+..|.+++..|+..+.
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~-------~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKD-------STVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccc-------cceecccceeehhhHHHHHH
Confidence 568889999999999999999999999986444444221111 11234688999998887654
No 111
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=90.57 E-value=0.24 Score=29.49 Aligned_cols=33 Identities=18% Similarity=0.446 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 58 FMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 58 ~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
-+++++++++ |.++-.|..|++.|.+|+.-+..
T Consensus 3 iLtDeQFdrL----W~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 3 ILTDEQFDRL----WNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp ---HHHHHHH----HTTS-B-TTS-EEHHHHHHHT--
T ss_pred cccHHHhhhh----hhhCcCCccCCEeHHHHHHHccc
Confidence 4688888887 79999999999999999998764
No 112
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=89.64 E-value=3.4 Score=31.39 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCC
Q 034012 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMS 60 (106)
Q Consensus 25 ~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~ 60 (106)
..+.++|...|.|.+|.++-.|+-.+-..-++.++.
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~ 230 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLD 230 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcCCCCC
Confidence 457888999999999999988877665543344443
No 113
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=89.62 E-value=2.8 Score=35.49 Aligned_cols=83 Identities=18% Similarity=0.342 Sum_probs=53.8
Q ss_pred CcccHHHHHHHHhhhcc------CCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHh
Q 034012 3 DGLNFKDFVAFLSVFSA------KASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLS-GSFMSDEQREQVLTQVFKDA 75 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~------~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~-~~~l~~~~~~~~~~~~~~~~ 75 (106)
+++++++|..-+..+-. .+.|+-.+.......|++.+|+|+..|+..+|-.-= -.-++.++++.. |+..
T Consensus 2268 G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~A----fraL 2343 (2399)
T KOG0040|consen 2268 GRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDA----FRAL 2343 (2399)
T ss_pred cCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHH----HHHh
Confidence 46788888766665321 223444899999999999999999999888875421 123334444443 6777
Q ss_pred cCCCCCcccHHHHHH
Q 034012 76 GYTRDSYLTLGDFIK 90 (106)
Q Consensus 76 d~~~~g~I~~~ef~~ 90 (106)
+. +..+|+.++..+
T Consensus 2344 ~a-~~~yvtke~~~~ 2357 (2399)
T KOG0040|consen 2344 DA-GKPYVTKEELYQ 2357 (2399)
T ss_pred hc-CCccccHHHHHh
Confidence 66 566666665543
No 114
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=89.02 E-value=4.9 Score=26.59 Aligned_cols=85 Identities=13% Similarity=0.292 Sum_probs=54.4
Q ss_pred cccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcc
Q 034012 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 83 (106)
Q Consensus 4 ~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I 83 (106)
.|++.|....|..+- ....+-.++.+...-|.|.+|+|++.++.-+++......+..+.-...+. -....|-...|--
T Consensus 115 fIdl~ELK~mmEKLg-apQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~~LA-r~~eVDVskeGV~ 192 (244)
T KOG0041|consen 115 FIDLMELKRMMEKLG-APQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLLRLA-RLSEVDVSKEGVS 192 (244)
T ss_pred cccHHHHHHHHHHhC-CchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHHHHH-Hhcccchhhhhhh
Confidence 578888888877753 22333457888899999999999999999999875455555432211111 1234565555554
Q ss_pred cHHHHHH
Q 034012 84 TLGDFIK 90 (106)
Q Consensus 84 ~~~ef~~ 90 (106)
.-..|..
T Consensus 193 GAknFFe 199 (244)
T KOG0041|consen 193 GAKNFFE 199 (244)
T ss_pred hHHHHHH
Confidence 4455544
No 115
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=88.81 E-value=0.77 Score=24.85 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHH
Q 034012 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLR 52 (106)
Q Consensus 23 ~~~~~~~~F~~~D~d~~g~i~~~el~~~l~ 52 (106)
..+.+..+|+.. .++.++||..||++.+.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 346789999999 88999999999998753
No 116
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=88.25 E-value=3.5 Score=32.98 Aligned_cols=84 Identities=7% Similarity=0.184 Sum_probs=64.2
Q ss_pred cccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh---------cCCCCCHHHHHHHHHHHHHH
Q 034012 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL---------SGSFMSDEQREQVLTQVFKD 74 (106)
Q Consensus 4 ~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~---------~~~~l~~~~~~~~~~~~~~~ 74 (106)
..+++.|..++..+|++ .++..+|+.+-.+..-++|.++|..++..- +-+...+.++..+ ++.
T Consensus 204 ~f~~e~f~~~l~klcpR----~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~l----iek 275 (1189)
T KOG1265|consen 204 DFTLEKFYRLLNKLCPR----PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSL----IEK 275 (1189)
T ss_pred hccHHHHHHHHHhcCCc----hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHH----HHH
Confidence 35677888888887632 367889999988888999999999999841 1246667777777 466
Q ss_pred hcCCC----CCcccHHHHHHHHhcC
Q 034012 75 AGYTR----DSYLTLGDFIKVFGNS 95 (106)
Q Consensus 75 ~d~~~----~g~I~~~ef~~~l~~~ 95 (106)
+.+++ +|.++-+-|+.++.+.
T Consensus 276 yEp~~~~a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 276 YEPNSDNAEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred cCCchhhhhccccchhhhHHHhhCC
Confidence 66654 6889999999988873
No 117
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=86.56 E-value=4.3 Score=23.87 Aligned_cols=62 Identities=18% Similarity=0.349 Sum_probs=41.0
Q ss_pred HhhcCCCCCceeHHHHHHHHHHh-----cCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q 034012 32 KVYDSDCNGKVSFNDILEVLRDL-----SGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 93 (106)
Q Consensus 32 ~~~D~d~~g~i~~~el~~~l~~~-----~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 93 (106)
+.||+..+.+|+.++++..+..- +..+-.++-...++.+++.+...++..-++-+-+.++++
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr 76 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIR 76 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 46899999999999999999851 122333444556666666776666666666654444443
No 118
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=86.22 E-value=1.7 Score=23.82 Aligned_cols=51 Identities=12% Similarity=0.296 Sum_probs=39.7
Q ss_pred CcccHHHHHHHHhhhccC-CCHHHHHHHHHHhhcCC----CCCceeHHHHHHHHHH
Q 034012 3 DGLNFKDFVAFLSVFSAK-ASMQQKVQLIFKVYDSD----CNGKVSFNDILEVLRD 53 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~-~~~~~~~~~~F~~~D~d----~~g~i~~~el~~~l~~ 53 (106)
..++.++|..++..-.+. ....+.+..+++.|.++ ..+.++.++|...|.+
T Consensus 14 ~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 14 EYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp SSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 468899999999886533 23467888888888655 4799999999999976
No 119
>PLN02230 phosphoinositide phospholipase C 4
Probab=84.87 E-value=12 Score=28.73 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcC-C--CCCHHHHHHHHHHHHHHhc---CCCCCcccHHHHHHHHhcC
Q 034012 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG-S--FMSDEQREQVLTQVFKDAG---YTRDSYLTLGDFIKVFGNS 95 (106)
Q Consensus 22 ~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~-~--~l~~~~~~~~~~~~~~~~d---~~~~g~I~~~ef~~~l~~~ 95 (106)
.+...+..+|..|-.++ +.++.++|..+|... . . ..+.+.+..++..+..... ..+.+.++.+.|..+|.+.
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~-Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEE-GGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHh-CCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 35578999999996444 899999999999984 3 1 2356666666655433321 1234569999999988875
Q ss_pred C
Q 034012 96 G 96 (106)
Q Consensus 96 ~ 96 (106)
+
T Consensus 104 ~ 104 (598)
T PLN02230 104 D 104 (598)
T ss_pred c
Confidence 4
No 120
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=81.65 E-value=8.1 Score=22.46 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=39.6
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 25 ~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
..+..-|..+-+ +|+++...|-..+ |.+-+++-..++.+.+-+.-... .+.|+.+|+..++..
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI----GM~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI----GMKDSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQ 92 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH----T--S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc----CCcccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHH
Confidence 467777887776 8999999998776 65656666666654444433333 567999998876644
No 121
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=81.30 E-value=3.4 Score=21.99 Aligned_cols=22 Identities=23% Similarity=0.721 Sum_probs=19.9
Q ss_pred HhhcCCCCCceeHHHHHHHHHH
Q 034012 32 KVYDSDCNGKVSFNDILEVLRD 53 (106)
Q Consensus 32 ~~~D~d~~g~i~~~el~~~l~~ 53 (106)
+.||...+.+|+.+++..++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4689999999999999999985
No 122
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=80.98 E-value=8.5 Score=22.24 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=42.3
Q ss_pred ccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 034012 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLT 69 (106)
Q Consensus 5 i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~ 69 (106)
|.-.+|...++.+. ..-.++.+..+-+.+-.++....+..++...+..+.+...+++++.++..
T Consensus 20 vP~~Dy~PLlALL~-r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~ 83 (96)
T PF11829_consen 20 VPPTDYVPLLALLR-RRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVRA 83 (96)
T ss_dssp B-HHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHH
T ss_pred CCCCccHHHHHHhc-ccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHH
Confidence 44556777777765 44666777777777766666666888888888887777788888877643
No 123
>PLN02223 phosphoinositide phospholipase C
Probab=80.69 E-value=18 Score=27.41 Aligned_cols=75 Identities=7% Similarity=-0.031 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHhhcCCCCCceeHHHHHHHH---HHhcC-CCCCHHHHHHHHHHHHHHhc----CCCCCcccHHHHHHHHh
Q 034012 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVL---RDLSG-SFMSDEQREQVLTQVFKDAG----YTRDSYLTLGDFIKVFG 93 (106)
Q Consensus 22 ~~~~~~~~~F~~~D~d~~g~i~~~el~~~l---~~~~~-~~l~~~~~~~~~~~~~~~~d----~~~~g~I~~~ef~~~l~ 93 (106)
.+.+.++.+|..|- +++|.++.+.+.+++ ...=+ ...+.+.++.+++.++.... ....+.++.+.|..+|.
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 35578999999984 788999999999999 43212 35667778888777654432 12235699999999998
Q ss_pred cCCC
Q 034012 94 NSGL 97 (106)
Q Consensus 94 ~~~~ 97 (106)
+.++
T Consensus 92 s~~~ 95 (537)
T PLN02223 92 STEL 95 (537)
T ss_pred Cccc
Confidence 8653
No 124
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=80.09 E-value=1.8 Score=23.44 Aligned_cols=48 Identities=25% Similarity=0.339 Sum_probs=34.4
Q ss_pred ccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcC
Q 034012 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG 56 (106)
Q Consensus 5 i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~ 56 (106)
++|...+.++.... +..+...+...|+.=..++|+.+||.+.++.++|
T Consensus 9 ~~F~~L~~~l~~~l----~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 9 MPFPMLFSALSKHL----PPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred ccHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 45555555555542 2345666777777778999999999999999866
No 125
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=77.05 E-value=2.4 Score=32.48 Aligned_cols=44 Identities=25% Similarity=0.479 Sum_probs=38.9
Q ss_pred CCcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHH
Q 034012 2 VDGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDI 47 (106)
Q Consensus 2 ~~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el 47 (106)
-+.++|.++...+..+. .+...+++..+|+.||++++ ....++.
T Consensus 569 ~g~Ltf~~lv~gL~~l~-~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 569 TGLLTFKDLVSGLSILK-AGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred cceeEHHHHHHHHHHHH-hhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 45789999999999987 67777999999999999999 8888777
No 126
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.83 E-value=4.1 Score=29.37 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHH
Q 034012 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDE 62 (106)
Q Consensus 22 ~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~ 62 (106)
.+.+.+++.|+.+|+.++|+|+-.-++.++... +..+++.
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~-N~~vse~ 345 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTAL-NRLVSEP 345 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHh-cccccCH
Confidence 346789999999999999999999999999986 6444443
No 127
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=76.57 E-value=5.1 Score=24.26 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=21.4
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 034012 26 KVQLIFKVYDSDCNGKVSFNDILEVLRD 53 (106)
Q Consensus 26 ~~~~~F~~~D~d~~g~i~~~el~~~l~~ 53 (106)
.+..++..||++++|.|+.-+++..+..
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 4678899999999999999999887764
No 128
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=75.51 E-value=1.1 Score=29.46 Aligned_cols=56 Identities=20% Similarity=0.417 Sum_probs=37.3
Q ss_pred HHHhhc-CCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 034012 30 IFKVYD-SDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92 (106)
Q Consensus 30 ~F~~~D-~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 92 (106)
-|..+| +-.+|+++.-|+.-+-.- -++ ++..+..+|..+|.++||+|+.+|+...+
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~ap----~ip---me~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLRAP----LIP---MEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eeccccCCCccccccccccccccCC----ccc---HHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 344455 345677877666543222 122 34556677999999999999999987655
No 129
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=75.31 E-value=1.2 Score=37.57 Aligned_cols=72 Identities=13% Similarity=0.190 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHHHhcCCCCCcccHHHHHHHHhcCCC
Q 034012 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQR--EQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 97 (106)
Q Consensus 22 ~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~--~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 97 (106)
+.-+.+..+|..||++..|.|...++...++.+ .+++.-... .+++ ........++.|++.+-+.++....+
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L-~ppL~~~k~~~~kli---~mdmp~~~gd~V~f~d~L~aL~~r~l 1487 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSL-DPPLDLGKPNKRKLI---SMDLPMVSGDRVHCLDILFALTKRVL 1487 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhc-CCccccCCCCCceee---eeecCcCCCCeeehhhHHHHHHHHhh
Confidence 344789999999999999999999999999987 554431100 0111 22333457788999988888777655
No 130
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=74.84 E-value=6.1 Score=25.32 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGS----FMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 24 ~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~----~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
.+++..+|..|++.+.+.+|..|+...++.-... ...... -++.. ++.. -.+.+|.+..++-..++.+
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~-~EW~~-~y~L-~~d~dG~l~Ke~iR~vYDG 166 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAF-FEWGA-LYIL-AKDKDGFLSKEDIRGVYDG 166 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhh-hHHHH-HHHH-HcCcCCcEeHHHHhhhcch
Confidence 3789999999999999999999999999862110 011111 12111 1222 2567999999988777654
No 131
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=74.79 E-value=11 Score=20.24 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=30.3
Q ss_pred eeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 42 VSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 42 i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
++.+++..+++.. +..++++++..+ ++.-+..+.-..+-+.+.+++.+
T Consensus 14 l~d~~m~~if~l~-~~~vs~~el~a~----lrke~~~~y~~c~D~~L~~FL~G 61 (68)
T PF07308_consen 14 LKDDDMIEIFALA-GFEVSKAELSAW----LRKEDEKGYKECSDQLLRNFLNG 61 (68)
T ss_pred CChHHHHHHHHHc-CCccCHHHHHHH----HCCCCCccccccChHHHHHHHHH
Confidence 4556777788775 888888888777 46554444444555555555543
No 132
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=74.59 E-value=4 Score=24.09 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHhhcCCCCCceeHHHHHH
Q 034012 22 SMQQKVQLIFKVYDSDCNGKVSFNDILE 49 (106)
Q Consensus 22 ~~~~~~~~~F~~~D~d~~g~i~~~el~~ 49 (106)
.++..+...|+..|.|++|.|+..|...
T Consensus 85 ~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 85 PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 4445678888999999999999998753
No 133
>PLN02228 Phosphoinositide phospholipase C
Probab=74.25 E-value=28 Score=26.60 Aligned_cols=68 Identities=16% Similarity=0.397 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHhcCC----CCCcccHHHHHHHHhcC
Q 034012 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF-MSDEQREQVLTQVFKDAGYT----RDSYLTLGDFIKVFGNS 95 (106)
Q Consensus 22 ~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~-l~~~~~~~~~~~~~~~~d~~----~~g~I~~~ef~~~l~~~ 95 (106)
.+...+..+|..+-.+ +.++.++|..++...=+.. .+.+.+..+ +..+... ..|.++.+.|..++.+.
T Consensus 21 ~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 21 EPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDI----FHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHH----HHHhccchhhcccCccCHHHHHHHhcCc
Confidence 3668899999988643 6899999999998751222 334445555 4444322 34679999999988764
No 134
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=72.40 E-value=46 Score=26.31 Aligned_cols=89 Identities=19% Similarity=0.335 Sum_probs=53.6
Q ss_pred cccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhcCCCCCc
Q 034012 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG-SFMSDEQREQVLTQVFKDAGYTRDSY 82 (106)
Q Consensus 4 ~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~-~~l~~~~~~~~~~~~~~~~d~~~~g~ 82 (106)
++...+|........ ..+ .+..+|..+-.+ .++++.+++..++...-+ ...+.+.++++++..=..-.....+.
T Consensus 188 k~~~~~~~~~~~~~~--~rp--ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~ 262 (746)
T KOG0169|consen 188 KLEEEEFVKFRKELT--KRP--EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGL 262 (746)
T ss_pred eehHHHHHHHHHhhc--cCc--hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccce
Confidence 455566666655543 222 566666665434 788888888888886411 24556666666543211112234556
Q ss_pred ccHHHHHHHHhcCCC
Q 034012 83 LTLGDFIKVFGNSGL 97 (106)
Q Consensus 83 I~~~ef~~~l~~~~~ 97 (106)
++.+.|..+|.+...
T Consensus 263 l~ldgF~~yL~S~~~ 277 (746)
T KOG0169|consen 263 LSLDGFTRYLFSPDC 277 (746)
T ss_pred ecHHHHHHHhcCccC
Confidence 999999998877654
No 135
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.21 E-value=14 Score=29.35 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=44.1
Q ss_pred HHHHHHhhc--CCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 27 VQLIFKVYD--SDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 27 ~~~~F~~~D--~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
-.+-++.|+ +-+.|+|+...-+.++-.. .+.. .++.++|...|.|.||+++-.||-=.++-
T Consensus 15 r~K~~~qF~~Lkp~~gfitg~qArnfflqS---~LP~----~VLaqIWALsDldkDGrmdi~EfSIAmkL 77 (1118)
T KOG1029|consen 15 RQKHDAQFGQLKPGQGFITGDQARNFFLQS---GLPT----PVLAQIWALSDLDKDGRMDIREFSIAMKL 77 (1118)
T ss_pred HHHHHHHHhccCCCCCccchHhhhhhHHhc---CCCh----HHHHHHHHhhhcCccccchHHHHHHHHHH
Confidence 344455555 5788999999988888663 3433 34556689999999999999999665543
No 136
>PLN02222 phosphoinositide phospholipase C 2
Probab=71.61 E-value=34 Score=26.25 Aligned_cols=68 Identities=18% Similarity=0.333 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcC
Q 034012 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGS-FMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 95 (106)
Q Consensus 23 ~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~-~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 95 (106)
+...+..+|..|-. ++.++.++|..+|...=+. ..+.+.++.++++. ... ...+.++++.|..++.+.
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~-~~~--~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSA-SSL--LHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhh-hhh--hhccCcCHHHHHHHhcCC
Confidence 44689999999864 4799999999999975222 34566667665442 111 235679999999998874
No 137
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.74 E-value=5.4 Score=29.97 Aligned_cols=36 Identities=11% Similarity=0.256 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhc
Q 034012 20 KASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLS 55 (106)
Q Consensus 20 ~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~ 55 (106)
..-+.+++.-+|...|.|++|.++..||...++.++
T Consensus 260 Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 260 SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVV 295 (737)
T ss_pred ccCchHHHHHHHhhcccCccccccHHHHHhhHhhee
Confidence 345668899999999999999999999999998644
No 138
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.72 E-value=2.9 Score=33.21 Aligned_cols=63 Identities=22% Similarity=0.227 Sum_probs=49.7
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 25 ~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
.+...+|...|++.+|+|+..+...++.. ..++...+... |..+|...+|.+++.+|.-.+..
T Consensus 283 ~~~~~if~q~d~~~dG~I~s~~~~~~f~~---~gl~~~~l~~~----w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDNDGSISSNEARNIFLP---FGLSKPRLAHV----WLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHHHHHHhccccCCCccccccccccccc---CCCChhhhhhh----hhhcchhccCcccccccchhhhh
Confidence 45667899999999999999998888865 34555555555 79999999999999988765443
No 139
>PLN02952 phosphoinositide phospholipase C
Probab=66.82 E-value=27 Score=26.90 Aligned_cols=52 Identities=8% Similarity=0.025 Sum_probs=36.3
Q ss_pred CCCceeHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 38 CNGKVSFNDILEVLRDLSG-SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~-~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
+.|.++++++..+.+.+.. ......++..+ |..+.. +.+.++.++|..++..
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~l----f~~~~~-~~~~mt~~~l~~FL~~ 65 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDV----FCKFSV-GGGHMGADQLRRFLVL 65 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHH----HHHHhC-CCCccCHHHHHHHHHH
Confidence 4689999999988887621 22245566665 677644 3467999999988865
No 140
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=66.77 E-value=14 Score=20.97 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=24.5
Q ss_pred CCCceeHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q 034012 38 CNGKVSFNDILEVLRDLSG-SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 93 (106)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~-~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 93 (106)
.+|.++..|...+-..+.. ..+++.+...+. ..+........++.+|...+.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~ 64 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELL----AEAEALEEEAPDLYEFTSLIK 64 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHH----HHHHHHHHhCCCHHHHHHHHH
Confidence 3566776666555443211 245555554442 222222333345555555443
No 141
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=65.72 E-value=14 Score=17.90 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=22.6
Q ss_pred HHHHHHHHhhc-CCC-CCceeHHHHHHHHHHh
Q 034012 25 QKVQLIFKVYD-SDC-NGKVSFNDILEVLRDL 54 (106)
Q Consensus 25 ~~~~~~F~~~D-~d~-~g~i~~~el~~~l~~~ 54 (106)
..+..+|..|- +++ ..+++..||+.++..-
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~E 37 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEKE 37 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHHH
Confidence 45677888883 444 4679999999999863
No 142
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.67 E-value=18 Score=21.92 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=35.7
Q ss_pred CCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Q 034012 37 DCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (106)
Q Consensus 37 d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~ 82 (106)
+..|.||.+|-.++|.. ..+++.++++.-.+.+|+--|+..-|.
T Consensus 51 ~~~~~iTlqEa~qILnV--~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 51 NSNGKITLQEAQQILNV--KEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred cccccccHHHHhhHhCC--CCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 44588999999999976 568889999888888899888875554
No 143
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=61.60 E-value=24 Score=24.08 Aligned_cols=50 Identities=22% Similarity=0.363 Sum_probs=34.8
Q ss_pred ceeHHHHHHHHH----HhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 034012 41 KVSFNDILEVLR----DLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (106)
Q Consensus 41 ~i~~~el~~~l~----~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 90 (106)
.++...+..++. ...+..++++++.-+.++++.......+..|++..|..
T Consensus 178 ~v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~K 231 (254)
T PF02864_consen 178 KVPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCK 231 (254)
T ss_dssp EEEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHT
T ss_pred cccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhh
Confidence 588888888877 23488999999999888877766555678899999965
No 144
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=61.39 E-value=5.5 Score=22.71 Aligned_cols=34 Identities=6% Similarity=0.061 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHhcCCC
Q 034012 64 REQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 97 (106)
Q Consensus 64 ~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 97 (106)
+..++..+...+...|.++|+.++|.-.+++.+.
T Consensus 36 i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~D~~ 69 (93)
T PF02269_consen 36 IIELCQEAMEVAQRRGSKKIKVEDLLFLLRKDPK 69 (93)
T ss_dssp HHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHHHhccccCcCcHHHHHHHHhcCHH
Confidence 4555555555566667889999999999988765
No 145
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=60.36 E-value=30 Score=19.71 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHhcCCC
Q 034012 64 REQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 97 (106)
Q Consensus 64 ~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 97 (106)
+..++..+...+- .+.++++.++|...+++.+.
T Consensus 37 i~~l~~~a~~~A~-~r~~k~~~eD~~FliR~D~~ 69 (92)
T cd07978 37 IIELCHKAAEVAQ-RRRGKVKVEDLIFLLRKDPK 69 (92)
T ss_pred HHHHHHHHHHHHH-cCCCCCCHHHHHHHHhcCHH
Confidence 3444444444443 57888999999999988765
No 146
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=58.79 E-value=14 Score=26.35 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 034012 7 FKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRD 53 (106)
Q Consensus 7 ~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~ 53 (106)
+..|..++.. ..++....+..|+..|-+++.+|+..|++..+..
T Consensus 355 wKpFK~~l~k---~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 355 WKPFKRVLLK---KSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred cchHHHHHHh---hccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 4445555544 3467778899999999999999999999988764
No 147
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=58.47 E-value=5.5 Score=25.82 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=36.0
Q ss_pred ccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 034012 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRD 53 (106)
Q Consensus 5 i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~ 53 (106)
|..+-|.++++... --...+.++.+|.-||.+.--..+.+++.+++..
T Consensus 36 l~Le~fQAGLSW~t-VL~KRe~freaF~~Fd~~kVA~~~~~dverLl~d 83 (188)
T COG2818 36 LCLEGFQAGLSWLT-VLKKREAFREAFHGFDPEKVAAMTEEDVERLLAD 83 (188)
T ss_pred HHHHHHhccchHHH-HHHhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhC
Confidence 44555666655532 2234478999999999999999999999999885
No 148
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=54.80 E-value=16 Score=27.07 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=35.0
Q ss_pred ccHHHHHHHHhhhccCCC---HHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 034012 5 LNFKDFVAFLSVFSAKAS---MQQKVQLIFKVYDSDCNGKVSFNDILEVLRD 53 (106)
Q Consensus 5 i~~~eF~~~~~~~~~~~~---~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~ 53 (106)
.+-.||+.+.+-.|..+. --+.++.+-+..|-|.+|.|+.+|=..+++.
T Consensus 45 at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 45 ATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred hhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 345566666555442221 1266788899999999999999998888886
No 149
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.72 E-value=6.4 Score=25.35 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 034012 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (106)
Q Consensus 22 ~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 90 (106)
+..+.++.+|.-||...--..+.+++..++..- +.--....++..+.++-...+.... +|.+|+=
T Consensus 50 ~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~-~IIRnr~KI~Avi~NA~~~l~i~~e---sf~~ylW 114 (179)
T TIGR00624 50 RKRENYRRAFSGFDIVKVARMTDADVERLLQDD-GIIRNRGKIEATIANARAALQLEQN---DLVEFLW 114 (179)
T ss_pred HhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCc-cchhhHHHHHHHHHHHHHHHHHHHc---cHHHHHH
Confidence 345788999999999998889999999888753 3323344455555532222211111 6777763
No 150
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=53.52 E-value=17 Score=19.74 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=15.1
Q ss_pred CCCCCceeHHHHHHHHHHh
Q 034012 36 SDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 36 ~d~~g~i~~~el~~~l~~~ 54 (106)
.-..|++..+|+..++...
T Consensus 25 ~~~~Gkv~~ee~n~~~e~~ 43 (75)
T TIGR02675 25 MLASGKLRGEEINSLLEAL 43 (75)
T ss_pred HHHcCcccHHHHHHHHHHh
Confidence 4568999999999888763
No 151
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=53.22 E-value=18 Score=18.93 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=20.8
Q ss_pred ceeHHHHHHHHHHhcCCCCCHHHHHHH
Q 034012 41 KVSFNDILEVLRDLSGSFMSDEQREQV 67 (106)
Q Consensus 41 ~i~~~el~~~l~~~~~~~l~~~~~~~~ 67 (106)
.|+.++|..+++.. .+.++.+++.+.
T Consensus 29 ~it~~DF~~Al~~~-kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKV-KPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTC-GGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHc-CCCCCHHHHHHH
Confidence 48899999999986 888888887776
No 152
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.80 E-value=26 Score=25.75 Aligned_cols=46 Identities=26% Similarity=0.332 Sum_probs=31.7
Q ss_pred CCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 034012 38 CNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (106)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 90 (106)
-||+|+...-+..| ++.++++. ++.++|+.+|.+.||.++-+||.-
T Consensus 456 ~~gk~sg~~ak~~m---v~sklpns----vlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 456 VNGKLSGRNAKKEM---VKSKLPNS----VLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred cCceeccchhHHHH---HhccCchh----HHHhhhhhhcCCcccCcCHHHHHH
Confidence 45666655555444 34455543 455569999999999999999864
No 153
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=51.45 E-value=15 Score=16.58 Aligned_cols=15 Identities=0% Similarity=0.257 Sum_probs=12.1
Q ss_pred CCcccHHHHHHHHhc
Q 034012 80 DSYLTLGDFIKVFGN 94 (106)
Q Consensus 80 ~g~I~~~ef~~~l~~ 94 (106)
.|+|++++++.+..+
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 578999999887765
No 154
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=49.39 E-value=48 Score=18.73 Aligned_cols=52 Identities=6% Similarity=0.224 Sum_probs=29.2
Q ss_pred CCcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 2 VDGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 2 ~~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
++.||.+|++....... -.-..+.+..+....-...-.-.+.++-..++..+
T Consensus 12 ln~iT~~eLlkyskqy~-i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 12 LNNITAKELLKYSKQYN-ISITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred HhcCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 34677777777766643 23333455555555544444555566666666654
No 155
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=49.25 E-value=21 Score=14.55 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=11.9
Q ss_pred cCCCCCceeHHHHHHHH
Q 034012 35 DSDCNGKVSFNDILEVL 51 (106)
Q Consensus 35 D~d~~g~i~~~el~~~l 51 (106)
|-+++|.|+.-++..+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 56788999887776543
No 156
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=48.38 E-value=5.8 Score=25.73 Aligned_cols=67 Identities=10% Similarity=0.166 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 034012 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (106)
Q Consensus 22 ~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 90 (106)
+..+.++.+|.-||...--..+.+++..++..- +.--....++..+.++-...+.... .-||.+|+=
T Consensus 51 ~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~-~IIRnr~KI~Avi~NA~~~l~i~~e-~gSf~~ylW 117 (187)
T PRK10353 51 KKRENYRACFHQFDPVKVAAMQEEDVERLVQDA-GIIRHRGKIQAIIGNARAYLQMEQN-GEPFADFVW 117 (187)
T ss_pred HHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCc-hhHHhHHHHHHHHHHHHHHHHHHHh-cCCHHHHHh
Confidence 344789999999999888888999999888752 3222334455555432222222112 236676663
No 157
>PRK09071 hypothetical protein; Validated
Probab=46.68 E-value=81 Score=22.26 Aligned_cols=24 Identities=8% Similarity=0.119 Sum_probs=10.9
Q ss_pred ceeHHHHHHHHHHhcCCCCCHHHH
Q 034012 41 KVSFNDILEVLRDLSGSFMSDEQR 64 (106)
Q Consensus 41 ~i~~~el~~~l~~~~~~~l~~~~~ 64 (106)
.++.+|...++..++....++.++
T Consensus 20 ~Lt~eEa~~~~~~il~g~~~~~q~ 43 (323)
T PRK09071 20 SLTREEARQAMGMILDGEVEDDQL 43 (323)
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHH
Confidence 344455444444444444444433
No 158
>COG5562 Phage envelope protein [General function prediction only]
Probab=46.13 E-value=29 Score=21.39 Aligned_cols=26 Identities=12% Similarity=0.325 Sum_probs=20.2
Q ss_pred CCCCCcccHHHHHHHHhcCCC-ceeee
Q 034012 77 YTRDSYLTLGDFIKVFGNSGL-KMEVE 102 (106)
Q Consensus 77 ~~~~g~I~~~ef~~~l~~~~~-~~~~~ 102 (106)
....|..+|++|+..+..+++ +=.++
T Consensus 83 ~~qsGqttF~ef~~~la~AGVfrwv~d 109 (137)
T COG5562 83 RHQSGQTTFEEFCSALAEAGVFRWVTD 109 (137)
T ss_pred HHhcCCccHHHHHHHHHhCCeEEEEEE
Confidence 446899999999999998887 43333
No 159
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=44.82 E-value=52 Score=17.87 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 034012 20 KASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLT 69 (106)
Q Consensus 20 ~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~ 69 (106)
.+...+.++.-|.. .=+.|++.|+..+-..++...++.++++++++
T Consensus 11 ~G~~~e~vk~~F~~----~~~~Vs~~EI~~~Eq~Li~eG~~~eeiq~LCd 56 (71)
T PF04282_consen 11 EGEDPEEVKEEFKK----LFSDVSASEISAAEQELIQEGMPVEEIQKLCD 56 (71)
T ss_pred CCCCHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHcCCCHHHHHHHhH
Confidence 34444566666663 22357888888887777667788888888753
No 160
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=44.43 E-value=70 Score=20.61 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=26.1
Q ss_pred CCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034012 36 SDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (106)
Q Consensus 36 ~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~ 68 (106)
-|.+|++..+++...++.- ...++.+.+.+++
T Consensus 28 ld~~G~v~v~~Ll~~~~~~-~~~~t~~~l~~vV 59 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKA-YKWVTRELLEAVV 59 (179)
T ss_pred cCCCCCEEHHHHHHHHHHc-cCCCCHHHHHHHH
Confidence 4799999999999988763 5678888888874
No 161
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=42.94 E-value=46 Score=23.98 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=47.0
Q ss_pred hhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHHHhcCCCCCcccHHHH
Q 034012 15 SVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFM------SDEQREQVLTQVFKDAGYTRDSYLTLGDF 88 (106)
Q Consensus 15 ~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l------~~~~~~~~~~~~~~~~d~~~~g~I~~~ef 88 (106)
+..+ .++-.++++.+|.... |.+|.+....+.++++..+..+- +-...+..+...|. .+.+++...|
T Consensus 137 atlc-~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evlslpT~v~e~psfg~te~~a~~cf~-----qqrKv~Ln~f 209 (434)
T KOG4301|consen 137 ATLC-GGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYTELSARLCFL-----QQRKVELNQF 209 (434)
T ss_pred hhhc-cchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHcCCchhhcCCCcchHHHHHHHHHH-----HHHHHHHHHH
Confidence 3344 5566788888888764 67788777777777776432111 11111222222232 3557888888
Q ss_pred HHHHhcCCC-ceeeeec
Q 034012 89 IKVFGNSGL-KMEVEVP 104 (106)
Q Consensus 89 ~~~l~~~~~-~~~~~~~ 104 (106)
+..+...+- .+-+++|
T Consensus 210 ldtl~sdp~p~cl~wlp 226 (434)
T KOG4301|consen 210 LDTLMSDPPPQCLVWLP 226 (434)
T ss_pred HHHHhcCCCchhHHHHH
Confidence 887766544 3333333
No 162
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=41.81 E-value=28 Score=22.07 Aligned_cols=50 Identities=12% Similarity=0.196 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 034012 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDA 75 (106)
Q Consensus 24 ~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 75 (106)
...+..+++++-..+...++..+|...+.. |..+|+++++..+...+...
T Consensus 84 ~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGV--GV~VT~E~I~~~V~~~i~~~ 133 (164)
T PF04558_consen 84 NLQLDAALKYLKSNPSEPIDVAEFEKACGV--GVVVTPEQIEAAVEKYIEEN 133 (164)
T ss_dssp HHHHHHHHHHHHHHGG-G--HHHHHHTTTT--T----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHcCC--CeEECHHHHHHHHHHHHHHh
Confidence 456777777776666677888888877765 88999999999987777653
No 163
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=41.80 E-value=73 Score=20.56 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=21.2
Q ss_pred cCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034012 35 DSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (106)
Q Consensus 35 D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~ 68 (106)
..|.+|++..+|+...+..- +..++.+++.+++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~-~~~~t~~~i~~vV 58 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFK-GLWVTEEDIREVV 58 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT--TT--HHHHHHHH
T ss_pred ccCCCCCEeHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 46899999999999888874 6778888888875
No 164
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.68 E-value=62 Score=17.58 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=24.9
Q ss_pred CCCceeHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034012 38 CNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (106)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~ 68 (106)
.|-.|+.+-++..+..+ |.++|+.+++++.
T Consensus 35 ~NPpine~~iR~M~~qm-GqKpSe~kI~Qvm 64 (71)
T COG3763 35 DNPPINEEMIRMMMAQM-GQKPSEKKINQVM 64 (71)
T ss_pred hCCCCCHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 45678888899999897 9999988888774
No 165
>PHA02335 hypothetical protein
Probab=38.60 E-value=79 Score=18.72 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=28.5
Q ss_pred CCcccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCC--ceeHHHHHHHHHH
Q 034012 2 VDGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNG--KVSFNDILEVLRD 53 (106)
Q Consensus 2 ~~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g--~i~~~el~~~l~~ 53 (106)
.+.|++++|..-+.++ .-++..|+.|...++- .+=.+.+..+...
T Consensus 22 p~sVt~ddf~~DlkRi-------~yIkrllKRy~~~~~~k~hlIlNhlI~l~Nv 68 (118)
T PHA02335 22 PQSVTYDDFEEDLKRF-------KYIKRLFKRYLNTGELKTHLILNHIIILYNV 68 (118)
T ss_pred cccccHHHHHHHHHHH-------HHHHHHHHhhcCCCChhHHHHHHHHHHHHHh
Confidence 3578888888877776 3677888888766664 2233444444443
No 166
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=38.40 E-value=54 Score=18.30 Aligned_cols=44 Identities=9% Similarity=0.276 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh--cCCCCCcccHHHH
Q 034012 44 FNDILEVLRDLSGSFMSDEQREQVLTQVFKDA--GYTRDSYLTLGDF 88 (106)
Q Consensus 44 ~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~--d~~~~g~I~~~ef 88 (106)
.+||...+..- ...++..++...++.++..+ .....+.|....|
T Consensus 3 k~eli~~i~~~-~~~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gf 48 (94)
T TIGR00988 3 KSELIERIATQ-QSHLPAKDVEDAVKTMLEHMASALAQGDRIEIRGF 48 (94)
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCc
Confidence 44444444432 23345555544444444333 1223444555444
No 167
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=38.25 E-value=70 Score=17.50 Aligned_cols=28 Identities=18% Similarity=0.423 Sum_probs=16.9
Q ss_pred CCCceeHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034012 38 CNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (106)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~ 68 (106)
..|+||+.++...+.. ..++++++..++
T Consensus 18 ~~G~lT~~eI~~~L~~---~~~~~e~id~i~ 45 (82)
T PF03979_consen 18 KKGYLTYDEINDALPE---DDLDPEQIDEIY 45 (82)
T ss_dssp HHSS-BHHHHHHH-S----S---HHHHHHHH
T ss_pred hcCcCCHHHHHHHcCc---cCCCHHHHHHHH
Confidence 5789999999888854 346777777764
No 168
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=38.01 E-value=92 Score=18.77 Aligned_cols=90 Identities=10% Similarity=0.117 Sum_probs=53.7
Q ss_pred CcccHHHHHHHHhhhc--c----CCCHHHHHHHHHHhhcCCC--CCceeHHHHHHHHHHhc------CCCCC-------H
Q 034012 3 DGLNFKDFVAFLSVFS--A----KASMQQKVQLIFKVYDSDC--NGKVSFNDILEVLRDLS------GSFMS-------D 61 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~--~----~~~~~~~~~~~F~~~D~d~--~g~i~~~el~~~l~~~~------~~~l~-------~ 61 (106)
+.|-|.-|..+++... + ..-.-..+..+|+.+.-.. +..++..++..++..+. .+... +
T Consensus 13 n~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~ 92 (127)
T PF09068_consen 13 NNIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVD 92 (127)
T ss_dssp TT-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----
T ss_pred hhHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHH
Confidence 4677888888776631 0 1112256778888876443 46799999999988653 11111 1
Q ss_pred HHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 034012 62 EQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92 (106)
Q Consensus 62 ~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 92 (106)
.-++-.+..++..+|+.++|+|+.-.|...+
T Consensus 93 ~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL 123 (127)
T PF09068_consen 93 LAVDLLLNWLLNVYDSQRTGKIRVLSFKVAL 123 (127)
T ss_dssp HHHHHHHHHHHHHH-TT--SEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeeehhHHHHHH
Confidence 2344555666888899999999988887655
No 169
>PHA02100 hypothetical protein
Probab=37.67 E-value=83 Score=18.13 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 034012 56 GSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (106)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 90 (106)
|..++++.++.+...+|..+-..++.+|.......
T Consensus 27 G~~VTpQvlD~wE~elw~am~~~gdqkIGRnaIRe 61 (112)
T PHA02100 27 GNRISEEQIDAVENEVWEAATAAGVTGIGRQAIRS 61 (112)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHcccchhhHHHHHH
Confidence 55667777777666666666666666666554433
No 170
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=37.61 E-value=1.1e+02 Score=19.40 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=38.1
Q ss_pred CCCCceeHHHHHHHHHHhcC-----------CCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcC
Q 034012 37 DCNGKVSFNDILEVLRDLSG-----------SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 95 (106)
Q Consensus 37 d~~g~i~~~el~~~l~~~~~-----------~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 95 (106)
+.+|.|+...|..++..-.| ..++.+|+..++.++.+.+...+.. -+++...+.+.
T Consensus 95 ~~n~~i~~~~ff~~lQ~~lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~~akae~~d---tE~Ye~vwkKm 161 (175)
T PF04876_consen 95 STNGLIDIGKFFDILQPKLGDWITKNFLKHPNRMSKDQIKTLCEQIIEMAKAESSD---TEHYEKVWKKM 161 (175)
T ss_pred CcccceeHHHHHHHHHHHhhhHHHHHHHhccchhhHHHHHHHHHHHHHHHhccCCc---hHHHHHHHHHh
Confidence 35788998888888774223 5788999999999988877544333 34555554443
No 171
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=37.49 E-value=1.2e+02 Score=23.34 Aligned_cols=50 Identities=10% Similarity=0.240 Sum_probs=36.9
Q ss_pred cccHHHHHHHHhhhc-c-CCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHH
Q 034012 4 GLNFKDFVAFLSVFS-A-KASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRD 53 (106)
Q Consensus 4 ~i~~~eF~~~~~~~~-~-~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~ 53 (106)
.|+..+...++.... + .....+.++.+....+.|.+|.|++++|..++..
T Consensus 34 ~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 34 YVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred eeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 566777777776642 1 2223578889999999999999999999887654
No 172
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=37.39 E-value=68 Score=17.09 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=25.4
Q ss_pred CCCceeHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034012 38 CNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (106)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~ 68 (106)
.|-.|+.+-++..+..+ |.++|+.++..+.
T Consensus 28 ~NPpine~mir~M~~QM-G~kpSekqi~Q~m 57 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQM-GRKPSEKQIKQMM 57 (64)
T ss_pred HCCCCCHHHHHHHHHHh-CCCccHHHHHHHH
Confidence 46679999999999997 9999999888773
No 173
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=36.29 E-value=82 Score=17.71 Aligned_cols=15 Identities=0% Similarity=0.184 Sum_probs=11.0
Q ss_pred cccHHHHHHHHhhhc
Q 034012 4 GLNFKDFVAFLSVFS 18 (106)
Q Consensus 4 ~i~~~eF~~~~~~~~ 18 (106)
.++|+++..-+...+
T Consensus 19 ~~s~e~L~~~v~~~c 33 (83)
T cd06404 19 SISLEELCNEVRDMC 33 (83)
T ss_pred CcCHHHHHHHHHHHh
Confidence 567888877777765
No 174
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.05 E-value=21 Score=28.60 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=48.8
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 25 ~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
......|+..|..+.|.|+..+-..++... .+.. .++.++|...|..+.|..+..+|...++.
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s---~L~~----qvl~qiws~~d~~~~g~l~~q~f~~~lrl 73 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKS---GLPD----QVLGQIWSLADSSGKGFLNRQGFYAALRL 73 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhcc---ccch----hhhhccccccccccCCccccccccccchH
Confidence 567889999999999999998888777652 3433 33444578899999999999999886655
No 175
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=34.03 E-value=1.1e+02 Score=18.27 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=30.0
Q ss_pred HHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034012 30 IFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (106)
Q Consensus 30 ~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~ 68 (106)
+|-+++..++...+..+++.++... |....++.+..++
T Consensus 6 AYLL~~lgGn~~psa~DikkIl~sV-G~E~d~e~i~~vi 43 (112)
T KOG3449|consen 6 AYLLAVLGGNASPSASDIKKILESV-GAEIDDERINLVL 43 (112)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHh-CcccCHHHHHHHH
Confidence 4445566777788899999999996 9988888877774
No 176
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=33.46 E-value=25 Score=19.96 Aligned_cols=16 Identities=25% Similarity=0.460 Sum_probs=13.0
Q ss_pred cCCCCCceeHHHHHHH
Q 034012 35 DSDCNGKVSFNDILEV 50 (106)
Q Consensus 35 D~d~~g~i~~~el~~~ 50 (106)
|.|+.|.||+..++++
T Consensus 69 ddD~gGWITPsNIkqi 84 (87)
T PF15017_consen 69 DDDGGGWITPSNIKQI 84 (87)
T ss_pred cCCCCccccchhhhhh
Confidence 4578899999988876
No 177
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=33.30 E-value=1e+02 Score=21.75 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=34.0
Q ss_pred CCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcCCC
Q 034012 38 CNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 97 (106)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 97 (106)
..|++-..+++..+..+.+..+++++++.+ +.. +..+ ++|..++....+
T Consensus 37 ~~~~~v~~gl~~~l~~L~~l~~t~~ei~~l-----~~~-----~~~~-~~~~~~L~~~~~ 85 (327)
T cd01570 37 GGGYAVFAGLEELLEYLENFRFTEEDIDYL-----RSL-----GIFD-EEFLDYLRGFRF 85 (327)
T ss_pred CCcccHHHHHHHHHHHHhcCCCCHHHHHHH-----HhC-----CCCC-HHHHHHHHhCCC
Confidence 456777889999999775777999987665 331 1233 678887776544
No 178
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=32.70 E-value=1.7e+02 Score=20.35 Aligned_cols=83 Identities=12% Similarity=-0.018 Sum_probs=48.6
Q ss_pred cHHHHHHHHhh-hccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCccc
Q 034012 6 NFKDFVAFLSV-FSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLT 84 (106)
Q Consensus 6 ~~~eF~~~~~~-~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~ 84 (106)
.|..|...+.. +.......+.+..++..+=.++-..++.+.+..+-..+ ...++++++...+...+...- +.-...-
T Consensus 200 ~f~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~~~~i~~l~~r~-~l~~s~~~a~~~~~~lI~~s~-~~~~t~~ 277 (289)
T cd00893 200 DFKKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFRGSTIKKLKERL-CLNMSEKEAINTVMKKIDSSY-NSITTKL 277 (289)
T ss_pred hHHHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHH-hhhhHHH
Confidence 35666666544 11122334556667766644455566666676666665 788999998888777666552 2333344
Q ss_pred HHHHHH
Q 034012 85 LGDFIK 90 (106)
Q Consensus 85 ~~ef~~ 90 (106)
|+.|..
T Consensus 278 yD~~q~ 283 (289)
T cd00893 278 YDKVQY 283 (289)
T ss_pred HHHHHH
Confidence 555543
No 179
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=31.73 E-value=43 Score=21.99 Aligned_cols=24 Identities=17% Similarity=0.444 Sum_probs=20.0
Q ss_pred HHhhcCCCCCceeHHHHHHHHHHh
Q 034012 31 FKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 31 F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
..-+|.|++|.++.+|+..+....
T Consensus 56 l~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 56 LEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHhhhhcccCCCCHHHHHHHHHHH
Confidence 335789999999999999888765
No 180
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=31.62 E-value=1.6e+02 Score=20.79 Aligned_cols=43 Identities=19% Similarity=0.393 Sum_probs=23.4
Q ss_pred CCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 034012 38 CNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (106)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~ 91 (106)
++|.||++|-...++.. ....+++.++.+ ++.++ ||-+||..+
T Consensus 299 R~G~itReeal~~v~~~-d~~~~~~~~~~~----~~~lg------~t~~ef~~~ 341 (343)
T TIGR03573 299 RSGRITREEAIELVKEY-DGEFPKEDLEYF----LKYLG------ISEEEFWKT 341 (343)
T ss_pred HcCCCCHHHHHHHHHHh-cccccHHHHHHH----HHHhC------CCHHHHHHH
Confidence 56777777766666664 444443434443 45443 455566554
No 181
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=31.30 E-value=84 Score=16.33 Aligned_cols=36 Identities=14% Similarity=0.294 Sum_probs=24.4
Q ss_pred CCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 034012 39 NGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (106)
Q Consensus 39 ~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~ 91 (106)
+|.+...++...+... +..++...-|.-++.+|+..
T Consensus 21 ~g~v~ls~l~~~~~~~-----------------~~~f~~~~yG~~~l~~ll~~ 56 (74)
T PF12872_consen 21 DGWVSLSQLGQEYKKK-----------------YPDFDPRDYGFSSLSELLES 56 (74)
T ss_dssp TSSEEHHHHHHHHHHH-----------------HTT--TCCTTSSSHHHHHHT
T ss_pred CceEEHHHHHHHHHHH-----------------CCCCCccccCCCcHHHHHHh
Confidence 5677777777666654 45567778888888888865
No 182
>PRK00523 hypothetical protein; Provisional
Probab=31.12 E-value=96 Score=16.94 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=24.9
Q ss_pred CCCceeHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034012 38 CNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (106)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~ 68 (106)
.|-.|+.+-++..+..+ |.++|+.+++++.
T Consensus 36 ~NPpine~mir~M~~QM-GqKPSekki~Q~m 65 (72)
T PRK00523 36 ENPPITENMIRAMYMQM-GRKPSESQIKQVM 65 (72)
T ss_pred HCcCCCHHHHHHHHHHh-CCCccHHHHHHHH
Confidence 45678888899999997 9999998888773
No 183
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=30.37 E-value=13 Score=22.96 Aligned_cols=47 Identities=6% Similarity=0.145 Sum_probs=27.6
Q ss_pred ceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcCC
Q 034012 41 KVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSG 96 (106)
Q Consensus 41 ~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 96 (106)
.||.+|++++++.+ ...++.+- .+..=.+.++.|+|+.+...|.+.+
T Consensus 9 ~vTldevr~Av~~f-~~~lp~gi--------~rt~lv~~d~~iD~~~L~~yL~g~p 55 (140)
T PF13075_consen 9 DVTLDEVRRAVHQF-EEDLPKGI--------NRTILVNDDQSIDFERLAPYLGGIP 55 (140)
T ss_pred cccHHHHHHHHHHH-HHhCccCC--------ceEEEEcCCceecHHHHhhhcCCCC
Confidence 47778888888775 33332221 1222244677788887777776644
No 184
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=30.26 E-value=1.4e+02 Score=18.45 Aligned_cols=35 Identities=3% Similarity=0.107 Sum_probs=22.6
Q ss_pred CCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Q 034012 38 CNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAG 76 (106)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d 76 (106)
..+.|+++.|+.+|...+...++++-+..+ |..+-
T Consensus 45 ~~~~Id~egF~~Fm~~yLe~d~P~~lc~hL----F~sF~ 79 (138)
T PF14513_consen 45 PEEPIDYEGFKLFMKTYLEVDLPEDLCQHL----FLSFQ 79 (138)
T ss_dssp ETTEE-HHHHHHHHHHHTT-S--HHHHHHH----HHHS-
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCHHHHHHH----HHHHh
Confidence 455899999999999887777766655555 66663
No 185
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=30.26 E-value=65 Score=18.13 Aligned_cols=45 Identities=16% Similarity=0.264 Sum_probs=19.9
Q ss_pred eeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh--cCCCCCcccHHHH
Q 034012 42 VSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDA--GYTRDSYLTLGDF 88 (106)
Q Consensus 42 i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~--d~~~~g~I~~~ef 88 (106)
++..||...+... ..++..+++.+++.++..+ .....+.|.+..|
T Consensus 2 mtk~eli~~ia~~--~~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gf 48 (96)
T TIGR00987 2 LTKAEMSEYLFDE--LGLSKREAKELVELFFEEIRRALENGEQVKLSGF 48 (96)
T ss_pred CCHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHcCCeEEecCC
Confidence 3445555555542 3345555555544444333 1123334555444
No 186
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=30.21 E-value=1.1e+02 Score=19.19 Aligned_cols=29 Identities=0% Similarity=0.105 Sum_probs=22.0
Q ss_pred HHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 26 ~~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
.+.......|+.+.||+|.+|++.++..+
T Consensus 70 ~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 70 QLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 34445555688888899999999998753
No 187
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=29.80 E-value=1.3e+02 Score=19.11 Aligned_cols=33 Identities=15% Similarity=0.313 Sum_probs=20.4
Q ss_pred CCcccHHHHHHHHhhhc----cCCCHHHHHHHHHHhh
Q 034012 2 VDGLNFKDFVAFLSVFS----AKASMQQKVQLIFKVY 34 (106)
Q Consensus 2 ~~~i~~~eF~~~~~~~~----~~~~~~~~~~~~F~~~ 34 (106)
++.|+|++|..++..+. ...+.++.+..+-+..
T Consensus 71 ~~~~tf~~fkkal~ela~~R~k~Ks~ee~l~~I~~ll 107 (180)
T KOG4070|consen 71 ARTITFEEFKKALEELATKRFKGKSKEEALDAICQLL 107 (180)
T ss_pred cccccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 46899999977666542 2334555555555554
No 188
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=29.59 E-value=91 Score=16.18 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=16.4
Q ss_pred CceeHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034012 40 GKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (106)
Q Consensus 40 g~i~~~el~~~l~~~~~~~l~~~~~~~~~ 68 (106)
..++.+|...++..++...+++.++-.++
T Consensus 13 ~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL 41 (66)
T PF02885_consen 13 EDLSREEAKAAFDAILDGEVSDAQIAAFL 41 (66)
T ss_dssp ----HHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45777777777777666677766665553
No 189
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=29.07 E-value=1.1e+02 Score=17.04 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=8.3
Q ss_pred CCCceeHHHHHHHHHH
Q 034012 38 CNGKVSFNDILEVLRD 53 (106)
Q Consensus 38 ~~g~i~~~el~~~l~~ 53 (106)
.+|.++..|...+-+.
T Consensus 12 aDG~v~~~E~~~i~~~ 27 (106)
T cd07316 12 ADGRVSEAEIQAARAL 27 (106)
T ss_pred ccCCcCHHHHHHHHHH
Confidence 3556666665544443
No 190
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=28.81 E-value=5.3 Score=25.74 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 24 ~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
.+.++.+|.-||.+.--..+.+++..++..- +.--....++.++.++-...+.... .-+|.+|+--+.+
T Consensus 48 r~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~-~iIRnr~KI~Avi~NA~~~l~i~~e-~gsF~~ylw~f~~ 116 (179)
T PF03352_consen 48 REAFREAFAGFDPEKVAKMDEEDIERLMQDP-GIIRNRRKIRAVINNARAILKIQEE-FGSFSDYLWSFVN 116 (179)
T ss_dssp HHHHHHHTGGGHHHHHHT--HHHHHHHTTST-TSS--HHHHHHHHHHHHHHHHHHHT-TS-HHHHHHHCTT
T ss_pred HHHHHHHHHCCCHHHHHcCCHHHHHHHhcCc-chhhhHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHhcCC
Confidence 4678999999999888889999998888753 3333455566665553332222222 2367777664443
No 191
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=28.54 E-value=1.1e+02 Score=17.03 Aligned_cols=40 Identities=13% Similarity=0.244 Sum_probs=22.8
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 034012 49 EVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 92 (106)
Q Consensus 49 ~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 92 (106)
.++..-.|..++++ +.+.+.++++.+ ..+.|+|+|++.+.
T Consensus 36 ~WLskeRgG~IP~~-V~~sl~kL~~La---~~N~v~feeLc~YA 75 (82)
T PF11020_consen 36 TWLSKERGGQIPEK-VMDSLSKLYKLA---KENNVSFEELCVYA 75 (82)
T ss_pred HHHHHhhCCCCCHH-HHHHHHHHHHHH---HHcCCCHHHHHHHH
Confidence 34444335555544 344444445544 45679999988754
No 192
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=28.46 E-value=1.4e+02 Score=18.04 Aligned_cols=49 Identities=14% Similarity=0.330 Sum_probs=35.0
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 034012 19 AKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQ 70 (106)
Q Consensus 19 ~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~ 70 (106)
+....-+++..+|++|- ++.|+.+.+-.++...=|..+|..++.-++.+
T Consensus 31 ~d~tf~~Kl~~Il~mFl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~ 79 (122)
T PF06648_consen 31 RDETFLDKLIKILKMFL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNR 79 (122)
T ss_pred cCchHHHHHHHHHHHHH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHH
Confidence 34455688889999886 46788888888888641368887777665544
No 193
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=28.38 E-value=1.5e+02 Score=18.36 Aligned_cols=50 Identities=24% Similarity=0.410 Sum_probs=32.1
Q ss_pred ccHHHHHHHHhh--hccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 5 LNFKDFVAFLSV--FSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 5 i~~~eF~~~~~~--~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
++-..|...+.. +....-....+..+|..+-..+...|++++|..+|..+
T Consensus 19 m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 19 MDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp EEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 444555555554 22223456788999998766677779999999999865
No 194
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=28.26 E-value=1.3e+02 Score=19.36 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=30.6
Q ss_pred cCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 034012 35 DSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFI 89 (106)
Q Consensus 35 D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~ 89 (106)
.-|.+|+++ .++..+...+ + ++.++++..++. +..+++-|-|.=+..|++
T Consensus 44 ~LD~~GyL~-~~~~eia~~l-~--~~~~~v~~~l~~-lQ~leP~GigAr~l~EcL 93 (194)
T PF04963_consen 44 NLDDDGYLT-ESLEEIAEEL-G--VSEEEVEKALEL-LQSLEPAGIGARDLQECL 93 (194)
T ss_dssp CBTTTSTCS-S-HHHHHHHC-T--S-HHHHHHHHHH-HHTTSS--TTTS-TTHHH
T ss_pred cCCCCCccC-CCHHHHHHHh-C--CCHHHHHHHHHH-HHcCCCCccCcCCHHHHH
Confidence 357889877 3444455553 3 677777777654 567899988887777754
No 195
>PF14164 YqzH: YqzH-like protein
Probab=28.05 E-value=1e+02 Score=16.39 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=21.8
Q ss_pred HHHHHHHhhcCC-CCCceeHHHHHHHHHHh
Q 034012 26 KVQLIFKVYDSD-CNGKVSFNDILEVLRDL 54 (106)
Q Consensus 26 ~~~~~F~~~D~d-~~g~i~~~el~~~l~~~ 54 (106)
-+..+|+.|..| ..-.++..|.+.+...+
T Consensus 9 mi~~~l~QYg~d~~~~pls~~E~~~L~~~i 38 (64)
T PF14164_consen 9 MIINCLRQYGYDVECMPLSDEEWEELCKHI 38 (64)
T ss_pred HHHHHHHHhCCcccCCCCCHHHHHHHHHHH
Confidence 467888998877 56678888888777654
No 196
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=27.88 E-value=31 Score=20.50 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=8.7
Q ss_pred CCCceeHHHHHHHHHH
Q 034012 38 CNGKVSFNDILEVLRD 53 (106)
Q Consensus 38 ~~g~i~~~el~~~l~~ 53 (106)
.||.++.+|...+...
T Consensus 36 aDG~v~~~E~~~i~~~ 51 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQL 51 (140)
T ss_dssp TTSS--CHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHH
Confidence 5677777776655543
No 197
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=26.88 E-value=2.3e+02 Score=19.98 Aligned_cols=84 Identities=10% Similarity=0.026 Sum_probs=47.6
Q ss_pred HHHHHHHHhhh-ccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccH
Q 034012 7 FKDFVAFLSVF-SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTL 85 (106)
Q Consensus 7 ~~eF~~~~~~~-~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~ 85 (106)
|..|...+..- .......+.+..++..+=..+-..+..+.+..+-.++ ...++++++...+...+...- +.-...-|
T Consensus 223 f~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~~~~i~~l~~rf-~l~~se~~a~~~~~~lI~~s~-~~~~t~~y 300 (311)
T cd05167 223 FKWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFRGDTIKNLRQRF-APEKSEREAAEFMLSLIAESY-EKFRTKGY 300 (311)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhhHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHH-hchhHHHH
Confidence 56665555441 1122333556666666533333445666677766665 888999988888766666552 22333445
Q ss_pred HHHHHHH
Q 034012 86 GDFIKVF 92 (106)
Q Consensus 86 ~ef~~~l 92 (106)
+.|..+.
T Consensus 301 D~~q~~~ 307 (311)
T cd05167 301 DQFQYYQ 307 (311)
T ss_pred HHHHHHh
Confidence 5554443
No 198
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=26.33 E-value=1.3e+02 Score=21.91 Aligned_cols=53 Identities=9% Similarity=0.203 Sum_probs=34.7
Q ss_pred HHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHHHhcCCCC
Q 034012 27 VQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFM-------SDEQREQVLTQVFKDAGYTRD 80 (106)
Q Consensus 27 ~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l-------~~~~~~~~~~~~~~~~d~~~~ 80 (106)
...+|+++|++.+..++.++-..++... +.+. +.+++...+..+++..+..+.
T Consensus 159 ~FfvFDI~d~~t~~~L~~~er~~l~e~y-glp~Vpvlg~~~~~~~~~~~~eii~~L~~~gR 218 (374)
T TIGR01209 159 GFFLFDIREGKTNRSLPVEERLELAEKY-GLPHVEILGVYTADEAVEEIYEIIERLNKEGR 218 (374)
T ss_pred eEEEEEEEECCCCccCCHHHHHHHHHHC-CCCccceeeEEcHHHHHHHHHHHHHHhhhcCc
Confidence 3557777777888999999999999875 5322 344444344444566655443
No 199
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=26.29 E-value=82 Score=17.59 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 034012 44 FNDILEVLRDLSGSFMSDEQREQVLTQVFKDA 75 (106)
Q Consensus 44 ~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 75 (106)
..||...+.. ...++..++...++.++...
T Consensus 3 K~eli~~ia~--~~~~s~~~~~~~v~~~~~~i 32 (90)
T PRK10753 3 KTQLIDVIAD--KAELSKTQAKAALESTLAAI 32 (90)
T ss_pred HHHHHHHHHH--HhCCCHHHHHHHHHHHHHHH
Confidence 4455555544 23455555555555444433
No 200
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=25.87 E-value=1.5e+02 Score=17.43 Aligned_cols=22 Identities=9% Similarity=0.267 Sum_probs=9.2
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHH
Q 034012 45 NDILEVLRDLSGSFMSDEQREQV 67 (106)
Q Consensus 45 ~el~~~l~~~~~~~l~~~~~~~~ 67 (106)
+|++.++... ...+++++++.+
T Consensus 82 dElrai~~~~-~~~~~~e~l~~I 103 (112)
T PRK14981 82 DELRAIFAKE-RYTLSPEELDEI 103 (112)
T ss_pred HHHHHHHHHh-ccCCCHHHHHHH
Confidence 3344444433 344444444444
No 201
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=25.71 E-value=1.7e+02 Score=19.52 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=33.7
Q ss_pred CcccHHHHHHHHhhhccCCC-----------HHHHHHHHHHhhcCCCCCcee-HHHHHHHHHH
Q 034012 3 DGLNFKDFVAFLSVFSAKAS-----------MQQKVQLIFKVYDSDCNGKVS-FNDILEVLRD 53 (106)
Q Consensus 3 ~~i~~~eF~~~~~~~~~~~~-----------~~~~~~~~F~~~D~d~~g~i~-~~el~~~l~~ 53 (106)
+.++|..++.-|+.....++ ..+++...-+.||++..|.|- ..+....+..
T Consensus 176 geldFn~iL~~Mk~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I~I~~d~s~~iyd 238 (246)
T PF10897_consen 176 GELDFNDILDKMKLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPIKIGKDMSKLIYD 238 (246)
T ss_pred CCCcHHHHHHHHHHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCceeeecchHHHHHH
Confidence 46789999988888653332 225667777889999999864 3444444443
No 202
>PF09873 DUF2100: Uncharacterized protein conserved in archaea (DUF2100); InterPro: IPR019210 This entry represents various hypothetical archaeal proteins, and has no known function.
Probab=25.66 E-value=2.1e+02 Score=19.09 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=28.0
Q ss_pred hcCCCCCceeHHHHHHHHHHhc-----------CCCCCHHHHHHHHHHHH
Q 034012 34 YDSDCNGKVSFNDILEVLRDLS-----------GSFMSDEQREQVLTQVF 72 (106)
Q Consensus 34 ~D~d~~g~i~~~el~~~l~~~~-----------~~~l~~~~~~~~~~~~~ 72 (106)
|-.-..|.|+.++|+.++..++ .+.+..++...++..+|
T Consensus 34 ~kdak~G~Id~~e~kkav~~liEAde~lYksaP~H~L~~E~AkeFck~l~ 83 (215)
T PF09873_consen 34 YKDAKPGKIDVEEFKKAVYSLIEADEYLYKSAPSHELNGEEAKEFCKLLF 83 (215)
T ss_pred ccCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCcccccHhHHHHHHHHHH
Confidence 4446789999999999998653 35677777766665543
No 203
>PRK05849 hypothetical protein; Provisional
Probab=25.48 E-value=1.7e+02 Score=23.50 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=31.7
Q ss_pred CCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcCCC-ceeeeec
Q 034012 38 CNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL-KMEVEVP 104 (106)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~-~~~~~~~ 104 (106)
..|.++.++...++.++ ..++.+..... +.. |.+++++|+.-+..... ...|..|
T Consensus 471 ~~g~~s~~~~~~f~~s~--~Tv~~~~~~D~----~~l------g~l~~~~FL~~YGHR~~ge~DI~sp 526 (783)
T PRK05849 471 EIGALSQEELDAFLNSL--NTVSKELSKDL----NSL------GELSKDEFLKRYGHLRPGTYDILSP 526 (783)
T ss_pred HcCCCCHHHHHHHHHHh--hHhHHHHHHHH----HHH------hccCHHHHHHHhCCCCCCceecCCC
Confidence 56777777777777664 33333322222 222 66999999987765333 4444444
No 204
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.23 E-value=1.8e+02 Score=18.20 Aligned_cols=59 Identities=20% Similarity=0.351 Sum_probs=35.6
Q ss_pred HHHHHHhhcCCCCCceeHHH---HHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHh
Q 034012 27 VQLIFKVYDSDCNGKVSFND---ILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 93 (106)
Q Consensus 27 ~~~~F~~~D~d~~g~i~~~e---l~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 93 (106)
.-.+|++.+.| |.++..| ++.+++. ...++.+++..++ .....-+...+++-.|...+.
T Consensus 32 ~~Llf~Vm~AD--G~v~~~E~~a~r~il~~--~f~i~~~~l~ali----~~~e~~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 32 AALLFHVMEAD--GTVSESEREAFRAILKE--NFGIDGEELDALI----EAGEEAGYEAIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHHHhcc--cCcCHHHHHHHHHHHHH--HcCCCHHHHHHHH----HHHHHhhHHHHHHHHHHHHHH
Confidence 34788888755 4566665 5555555 3566777777664 333333455677777766554
No 205
>PRK01060 endonuclease IV; Provisional
Probab=24.98 E-value=1e+02 Score=20.66 Aligned_cols=27 Identities=7% Similarity=0.182 Sum_probs=21.5
Q ss_pred CCCcccHHHHHHHHhcCC---CceeeeecC
Q 034012 79 RDSYLTLGDFIKVFGNSG---LKMEVEVPV 105 (106)
Q Consensus 79 ~~g~I~~~ef~~~l~~~~---~~~~~~~~~ 105 (106)
++|.|.|++|...++..+ ..+++|.|.
T Consensus 233 G~G~id~~~~~~~L~~~~y~g~~l~lE~~~ 262 (281)
T PRK01060 233 GEGTIGFDALRYIVHDPRFDGIPKILETPY 262 (281)
T ss_pred cCCcCCHHHHHHHHhCcccCCCeEEEeCCC
Confidence 678999999999998864 357777764
No 206
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=24.60 E-value=1.2e+02 Score=15.91 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=26.2
Q ss_pred CCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCC
Q 034012 38 CNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYT 78 (106)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~ 78 (106)
.++.++...+...+..- +..++++.+... ++.++.+
T Consensus 10 ~~~P~g~~~l~~~L~~~-g~~~se~avRrr----Lr~me~~ 45 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLR-GEELSEEAVRRR----LRAMERD 45 (66)
T ss_pred cCCCCCHHHHHHHHHhc-ChhhhHHHHHHH----HHHHHHC
Confidence 45678888888888876 888887777776 4665543
No 207
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=24.55 E-value=2.5e+02 Score=19.52 Aligned_cols=39 Identities=10% Similarity=0.278 Sum_probs=28.8
Q ss_pred CCCceeHHHHHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHhc
Q 034012 38 CNGKVSFNDILEVLRDLSG---------------SFMSDEQREQVLTQVFKDAG 76 (106)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~---------------~~l~~~~~~~~~~~~~~~~d 76 (106)
.+|.|+.+.++..+..++. ..++.+|-.++++.+.+..+
T Consensus 22 ~~g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~ 75 (309)
T cd00952 22 ATDTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVA 75 (309)
T ss_pred cCCCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhC
Confidence 3688999998888886532 46778888888777666654
No 208
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=24.53 E-value=1e+02 Score=24.79 Aligned_cols=51 Identities=14% Similarity=0.241 Sum_probs=35.9
Q ss_pred HHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCC
Q 034012 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRD 80 (106)
Q Consensus 25 ~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~ 80 (106)
-.+..++++||..++|.|..-+|+..+-.+ ..-..++.+..+ |+.....+.
T Consensus 470 ~~lN~llNvyD~~R~g~irvls~ki~~i~l-ck~~leek~~yl----F~~vA~~~s 520 (966)
T KOG4286|consen 470 MCLNWLLNVYDTGRTGRIRVLSFKIGIISL-CKAHLEDKYRYL----FKQVASSTS 520 (966)
T ss_pred HHHHHHHHhcccCCCcceEEeeehhhHHHH-hcchhHHHHHHH----HHHHcCchh
Confidence 456789999999999999999999888876 333333434433 677654443
No 209
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=23.98 E-value=2.8e+02 Score=21.23 Aligned_cols=65 Identities=18% Similarity=0.278 Sum_probs=45.0
Q ss_pred HHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcC-----CCCCcccHHHHHHHHhc
Q 034012 28 QLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGY-----TRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 28 ~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~-----~~~g~I~~~ef~~~l~~ 94 (106)
..+|..|-...++.++.--|..+|++. |..-++..+..++++ ++.+++ ..-+.++.+.|..++..
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkst-GLrtsDPRLk~mMd~-mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKST-GLRTSDPRLKDMMDE-MKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHc-CCCcCCchHHHHHHH-HHHHHhhhcccccceeecHHHHHHhhcc
Confidence 446666655557999999999999986 877777666666655 444553 23345888888887654
No 210
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=23.87 E-value=2.4e+02 Score=19.04 Aligned_cols=39 Identities=15% Similarity=0.337 Sum_probs=32.1
Q ss_pred CCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Q 034012 36 SDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAG 76 (106)
Q Consensus 36 ~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d 76 (106)
-+++|.+....+..-+..+ ..+++..|+..+-.+ +...+
T Consensus 162 G~gegQVpL~kL~~~l~KL-p~~lt~~ev~~v~~R-L~AL~ 200 (224)
T PF13829_consen 162 GNGEGQVPLRKLQKTLMKL-PRNLTKAEVDAVNKR-LRALG 200 (224)
T ss_pred cCCCCceeHHHHHHHHHhC-CccCCHHHHHHHHHH-HHHhc
Confidence 3688999999999999997 889999998886544 55555
No 211
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=23.84 E-value=73 Score=16.91 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=22.0
Q ss_pred CCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 034012 37 DCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQV 71 (106)
Q Consensus 37 d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~ 71 (106)
.++..++..++..+++...|..++..++..+++.+
T Consensus 9 ~G~~~~~~~~l~~~~~~~~g~~l~~~~l~~~~~~l 43 (76)
T PF08479_consen 9 EGNTLLPEEELQAILAPYIGRCLTLADLQQLADAL 43 (76)
T ss_dssp ES-TSSSCCHHHHHHGGGTTSBB-HHHHHHHHHHH
T ss_pred ECCCcCCHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Confidence 34455666777777777667777777776665443
No 212
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=23.22 E-value=2.2e+02 Score=18.35 Aligned_cols=33 Identities=9% Similarity=0.211 Sum_probs=26.9
Q ss_pred CCcccHHHHHHHHhhhccCCCHHHHHHHHHHhh
Q 034012 2 VDGLNFKDFVAFLSVFSAKASMQQKVQLIFKVY 34 (106)
Q Consensus 2 ~~~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~ 34 (106)
.+-|+|+-.+....++....+..+.+...|+.|
T Consensus 100 ~DIVDfdKLl~~t~~LL~FmdN~~~Id~~W~L~ 132 (170)
T PF08730_consen 100 IDIVDFDKLLRNTYRLLIFMDNEEHIDESWKLF 132 (170)
T ss_pred cceeeHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 356888888888888777778888888888887
No 213
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=23.16 E-value=87 Score=13.77 Aligned_cols=15 Identities=13% Similarity=0.160 Sum_probs=10.2
Q ss_pred CCceeHHHHHHHHHH
Q 034012 39 NGKVSFNDILEVLRD 53 (106)
Q Consensus 39 ~g~i~~~el~~~l~~ 53 (106)
+|.||.+|+...-..
T Consensus 14 ~G~IseeEy~~~k~~ 28 (31)
T PF09851_consen 14 KGEISEEEYEQKKAR 28 (31)
T ss_pred cCCCCHHHHHHHHHH
Confidence 577777777765544
No 214
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=22.85 E-value=84 Score=17.23 Aligned_cols=19 Identities=16% Similarity=0.372 Sum_probs=14.9
Q ss_pred hcCCCCCcccHHHHHHHHh
Q 034012 75 AGYTRDSYLTLGDFIKVFG 93 (106)
Q Consensus 75 ~d~~~~g~I~~~ef~~~l~ 93 (106)
...|..|.|+++.|+....
T Consensus 11 ~~~n~~G~iTl~gfLa~W~ 29 (76)
T PF08355_consen 11 VVTNEKGWITLQGFLAQWS 29 (76)
T ss_pred eEEcCCCcCcHHHHHHHHH
Confidence 3467899999999998553
No 215
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=22.67 E-value=1.3e+02 Score=15.57 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=22.3
Q ss_pred CCceeHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 034012 39 NGKVSFNDILEVLRDLSGSFMSDEQREQVLTQ 70 (106)
Q Consensus 39 ~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~ 70 (106)
+..+|.+|+...+..+ +..++..++..+...
T Consensus 7 s~~lTeEEl~~~i~~L-~~~~~~~dm~~IW~~ 37 (61)
T TIGR01639 7 SKKLSKEELNELINSL-DEIPNRNDMLIIWNQ 37 (61)
T ss_pred hHHccHHHHHHHHHhh-cCCCCHHHHHHHHHH
Confidence 3457888888888887 777777776666433
No 216
>PRK01844 hypothetical protein; Provisional
Probab=22.58 E-value=1.5e+02 Score=16.22 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=24.8
Q ss_pred CCCceeHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034012 38 CNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (106)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~ 68 (106)
.|-.|+.+-++..+..+ |.++|+.++++..
T Consensus 35 ~NPpine~mir~Mm~QM-GqkPSekki~Q~m 64 (72)
T PRK01844 35 KNPPINEQMLKMMMMQM-GQKPSQKKINQMM 64 (72)
T ss_pred HCCCCCHHHHHHHHHHh-CCCccHHHHHHHH
Confidence 45578888899999997 9999998888774
No 217
>COG1508 RpoN DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription]
Probab=22.35 E-value=3.4e+02 Score=20.34 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=37.3
Q ss_pred CCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 034012 36 SDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (106)
Q Consensus 36 ~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 90 (106)
-|.+|+++.+ +..+...+ +. .+.++++..+.. +..+|+-|-|.=++.|++.
T Consensus 120 Ldd~GYl~~~-le~~~~~l-~~-~~~~eve~vl~~-iQ~ldP~GV~Ar~l~EcL~ 170 (444)
T COG1508 120 LDDEGYLTES-LEEIAELL-GS-VDEEEVEKVLAR-IQSLDPAGVGARDLRECLL 170 (444)
T ss_pred cCcCCCcccC-HHHHHHhc-cc-ccHHHHHHHHHH-HhcCCCCccccCcHHHHHH
Confidence 4688998876 55555554 44 667777776544 7888999999989988765
No 218
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=22.35 E-value=3e+02 Score=19.76 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 44 FNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 44 ~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
..-++..+..+ |..++++++..++..+-...+.. ...++-+|+..++..
T Consensus 322 ~~~v~~~l~~~-g~~~~~~~~~~~~~~vk~~~~~~-~~~~~~~el~~~~~~ 370 (378)
T PRK11858 322 RHALKNKLKEY-GIELSREELCELLEKVKELSERK-KRSLTDEELKELVED 370 (378)
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHH
Confidence 34566777776 88999999988887765555433 467999999888765
No 219
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=22.17 E-value=1.8e+02 Score=17.03 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhc
Q 034012 56 GSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 94 (106)
Q Consensus 56 ~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 94 (106)
...++.+|-+.+ +...+.-.+|.|++...+.+++.
T Consensus 63 k~~ls~~EK~~~----~~~i~~yr~g~i~l~~~l~~L~~ 97 (117)
T PF08349_consen 63 KKKLSSEEKQHF----LDLIEDYREGKIPLSVPLTLLKH 97 (117)
T ss_pred HHhCCHHHHHHH----HHHHHHHHcCCccHHHHHHHHHH
Confidence 567777776666 34455557888888877776654
No 220
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.80 E-value=1.5e+02 Score=19.91 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=23.9
Q ss_pred cCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 034012 35 DSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQV 71 (106)
Q Consensus 35 D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~ 71 (106)
-...+|.|+..|-..++..+ ...-.+.+.+.++++.
T Consensus 120 AAkaDGhIDe~ERa~I~~~l-~esG~d~e~~~~le~E 155 (225)
T COG2979 120 AAKADGHIDEKERARIMQKL-QESGVDPEAQAFLEQE 155 (225)
T ss_pred HHhhcCCcCHHHHHHHHHHH-HHcCCCHHHHHHHHHH
Confidence 46789999999999998764 3333444455555443
No 221
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=21.68 E-value=1.4e+02 Score=15.51 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHhh--cCCCCCceeHHHHHHHHHHh
Q 034012 22 SMQQKVQLIFKVY--DSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 22 ~~~~~~~~~F~~~--D~d~~g~i~~~el~~~l~~~ 54 (106)
-+-+++....++| ++ +...++.++++.++...
T Consensus 12 l~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~l 45 (60)
T PF08672_consen 12 LPLDRIHSMLKMFPKDP-GGYDISLEELQEFLDRL 45 (60)
T ss_dssp EEHHHHHHHHHHH-GGG---TT--HHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHHH
Confidence 4457788888887 43 33457777777777764
No 222
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=21.26 E-value=1.7e+02 Score=16.50 Aligned_cols=50 Identities=16% Similarity=0.111 Sum_probs=32.4
Q ss_pred cccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHh
Q 034012 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 4 ~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~ 54 (106)
-|.+.+|...+....+..... ....+=.-.|--.||+||.=|+....+-+
T Consensus 22 IVPW~~F~~~L~~~h~~~~~~-~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 22 IVPWSEFRQALQKVHPISSGL-EAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp EEEHHHHHHHHHHHS--SSHH-HHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred EeeHHHHHHHHHHhcCCCchH-HHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 467889999988876444432 22333334688899999998888766653
No 223
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=21.25 E-value=2.8e+02 Score=19.00 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=28.4
Q ss_pred CCCCceeHHHHHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHhc
Q 034012 37 DCNGKVSFNDILEVLRDLSG---------------SFMSDEQREQVLTQVFKDAG 76 (106)
Q Consensus 37 d~~g~i~~~el~~~l~~~~~---------------~~l~~~~~~~~~~~~~~~~d 76 (106)
+.+|.|+.+.++..+..++. ..+|.+|-.++++.+.+..+
T Consensus 18 ~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~ 72 (296)
T TIGR03249 18 DADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK 72 (296)
T ss_pred CCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC
Confidence 35678998888888886531 46778888888777666543
No 224
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=21.13 E-value=1.5e+02 Score=16.48 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=27.6
Q ss_pred CCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCcccHH
Q 034012 37 DCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLG 86 (106)
Q Consensus 37 d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~d~~~~g~I~~~ 86 (106)
+.+|+=+.-||-.++..+ |. +.++..++-+++.+. .+.|.+.++
T Consensus 36 ~dS~k~~~p~fPkFLn~L-Gt----eIiEnAVefiLrSMt-R~tgF~E~~ 79 (88)
T PF15144_consen 36 DDSGKNPEPDFPKFLNLL-GT----EIIENAVEFILRSMT-RSTGFMEFE 79 (88)
T ss_pred cccCCCCCCchHHHHHHh-hH----HHHHHHHHHHHHHhh-cccCceecC
Confidence 455665566788888876 53 446666666677774 346655544
No 225
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=20.97 E-value=1.8e+02 Score=18.84 Aligned_cols=56 Identities=13% Similarity=0.222 Sum_probs=34.0
Q ss_pred cccHHHHHHHHhhh--ccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCC
Q 034012 4 GLNFKDFVAFLSVF--SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMS 60 (106)
Q Consensus 4 ~i~~~eF~~~~~~~--~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~ 60 (106)
.++.+.|...++.. .+..+.+.....+=..+-......|+..||-.++..+ |+.-+
T Consensus 36 av~~~~Fi~~aa~~f~q~~q~~~Na~~~I~~il~~k~~~~iT~~Df~~F~A~F-GP~~t 93 (181)
T PF11422_consen 36 AVSLDFFIKKAANRFKQPSQSLKNAIQVIQYILTPKNTNVITIPDFYKFLARF-GPEET 93 (181)
T ss_dssp EEEHHHHHHHHHHHHS-TTS-HHHHHHHHHHHS--SS-SEEEHHHHHHHHHHS-SSGGG
T ss_pred eeeHHHHHHHHHHHhccccccccchHHHHHHHHcCCCCceeeHHHHHHHHHHh-CCchh
Confidence 45566666665553 3345555555555555667778889999999998886 76554
No 226
>PLN02859 glutamine-tRNA ligase
Probab=20.76 E-value=1.7e+02 Score=23.60 Aligned_cols=51 Identities=20% Similarity=0.323 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Q 034012 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDA 75 (106)
Q Consensus 23 ~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 75 (106)
....+..+++.+-+.+...++..+|...+.. |..+|++++++.+...+...
T Consensus 85 T~~Ql~AA~kYl~~~~~~~~d~~~Fek~CGV--GV~VT~EqI~~~V~~~i~~~ 135 (788)
T PLN02859 85 TPAQLEAAFSFFSSTGPESFDLNKFEEACGV--GVVVSPEDIEAAVNEVFEEN 135 (788)
T ss_pred CHHHHHHHHHHHHhCCCCccCHHHHHHhCCC--CEEECHHHHHHHHHHHHHhh
Confidence 3467788888886666667887777776654 78888888888887766544
No 227
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=20.69 E-value=3.5e+02 Score=19.91 Aligned_cols=51 Identities=16% Similarity=0.302 Sum_probs=39.6
Q ss_pred cccHHHHHHHHhhhccCCCHHHHHHHHHHhhcCCCCCceeHHHHHHHHHHhc
Q 034012 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLS 55 (106)
Q Consensus 4 ~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~g~i~~~el~~~l~~~~ 55 (106)
.++++.+....+... .+.-++....+....|.+++|......+.+.+...+
T Consensus 74 ~~~l~k~~~~~~~~~-~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~vl 124 (427)
T KOG2557|consen 74 KMTLEKLVIAKATYE-KGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVVL 124 (427)
T ss_pred cchHHHHhhHHhhhc-cCcccHHHHHHHHHHhhccccccchhHHHHHHHHHh
Confidence 566677766665543 566678889999999999999999999888888643
No 228
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.68 E-value=2.1e+02 Score=17.16 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHH
Q 034012 44 FNDILEVLRDLSGSFMSDEQREQVL 68 (106)
Q Consensus 44 ~~el~~~l~~~~~~~l~~~~~~~~~ 68 (106)
..|++.++..- +..+++++++.++
T Consensus 82 ~~ElRsIla~e-~~~~s~E~l~~Il 105 (114)
T COG1460 82 PDELRSILAKE-RVMLSDEELDKIL 105 (114)
T ss_pred HHHHHHHHHHc-cCCCCHHHHHHHH
Confidence 44555555543 4555555555543
No 229
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.48 E-value=1e+02 Score=26.86 Aligned_cols=38 Identities=8% Similarity=0.151 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHhcCCC
Q 034012 59 MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 97 (106)
Q Consensus 59 l~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 97 (106)
++...++.. ..+|...|++..|.|.+.+...+++...-
T Consensus 1411 Ls~~d~~~F-~~vW~~fDpeatg~I~~~~~~~~lr~L~p 1448 (1592)
T KOG2301|consen 1411 LSEDDFEKF-YEAWDEFDPEATQEIPYSDLSAFLRSLDP 1448 (1592)
T ss_pred CCcccHHHH-HHHHHhcChhhheeeeHhhHHHHHHhcCC
Confidence 444444432 34489999999999999988777766443
No 230
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=20.40 E-value=92 Score=18.55 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=14.9
Q ss_pred CCCCceeHHHHHHHHHHh
Q 034012 37 DCNGKVSFNDILEVLRDL 54 (106)
Q Consensus 37 d~~g~i~~~el~~~l~~~ 54 (106)
|-+|.++.+++..++..+
T Consensus 6 DtSGSis~~~l~~fl~ev 23 (126)
T PF09967_consen 6 DTSGSISDEELRRFLSEV 23 (126)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 678999999998888754
Done!