BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034013
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LGE7|NDA8B_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B
OS=Arabidopsis thaliana GN=At5g18800 PE=2 SV=1
Length = 106
Score = 186 bits (471), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 84/105 (80%), Positives = 96/105 (91%)
Query: 1 MATAVDPSGDPIPSSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCV 60
M++AVD +G+PIP+SAVLTAS+KHIG+RC ENV FLKCK+ DPNPEKCLDKGR VTRCV
Sbjct: 1 MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60
Query: 61 LGLLKDLHQKCTKEMDEYVGCLYYHTNEFDFCRKEQQAFEKTCPL 105
LGLLKDLHQKC KEMD+YVGC+YY+TNEFD CRKEQ+AFEK CPL
Sbjct: 61 LGLLKDLHQKCQKEMDDYVGCMYYYTNEFDLCRKEQEAFEKVCPL 105
>sp|Q9SQT4|NDA8A_ARATH NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A
OS=Arabidopsis thaliana GN=At3g06310 PE=2 SV=1
Length = 108
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 79/103 (76%), Positives = 92/103 (89%)
Query: 3 TAVDPSGDPIPSSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLG 62
AVD +G+PIP+SAVLTAS+KHIG+RC EN+ FLKCK+ DPNPEKCL+KGR VTRCVLG
Sbjct: 5 AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64
Query: 63 LLKDLHQKCTKEMDEYVGCLYYHTNEFDFCRKEQQAFEKTCPL 105
LLKDLHQ+C KEMD YVGC+YY+TNEF+ CRKEQ+AFEK CPL
Sbjct: 65 LLKDLHQRCPKEMDAYVGCMYYYTNEFELCRKEQEAFEKVCPL 107
>sp|Q0MQB1|NDUA8_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Pan
troglodytes GN=NDUFA8 PE=2 SV=3
Length = 172
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 14 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTK 73
SSAVL A++ H G +C N EF+ C+ ++ +P +CL++G+ V +C L + + + C +
Sbjct: 21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAE 80
Query: 74 EMDEYVGCLYYHTNE-FDFCRKEQQAFEK 101
EY C+ Y + F CRK+Q F++
Sbjct: 81 PFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109
>sp|P51970|NDUA8_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8
OS=Homo sapiens GN=NDUFA8 PE=1 SV=3
Length = 172
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 14 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTK 73
SSAVL A++ H G +C N EF+ C+ ++ +P +CL++G+ V +C L + + + C +
Sbjct: 21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAE 80
Query: 74 EMDEYVGCLYYHTNE-FDFCRKEQQAFEK 101
EY C+ Y + F CRK+Q F++
Sbjct: 81 PFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109
>sp|Q0MQB0|NDUA8_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8
OS=Gorilla gorilla gorilla GN=NDUFA8 PE=2 SV=3
Length = 172
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 14 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTK 73
SSAVL A++ H G +C N EF+ C+ ++ +P +CL++G+ V +C L + + + C +
Sbjct: 21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAE 80
Query: 74 EMDEYVGCLYYHTNE-FDFCRKEQQAFEK 101
EY C+ Y + F CRK+Q F++
Sbjct: 81 PFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109
>sp|P0CB92|NDUA8_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8
OS=Pongo pygmaeus GN=NDUFA8 PE=2 SV=1
Length = 172
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 14 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTK 73
SSAVL A++ H G +C N EF+ C+ ++ +P +CL++G+ V +C L + + + C +
Sbjct: 21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAE 80
Query: 74 EMDEYVGCLYYHTNE-FDFCRKEQQAFEK 101
EY C+ Y + F CRK+Q F++
Sbjct: 81 PFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109
>sp|P0CB91|NDUA8_PONAB NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8
OS=Pongo abelii GN=NDUFA8 PE=2 SV=1
Length = 172
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 14 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTK 73
SSAVL A++ H G +C N EF+ C+ ++ +P +CL++G+ V +C L + + + C +
Sbjct: 21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAE 80
Query: 74 EMDEYVGCLYYHTNE-FDFCRKEQQAFEK 101
EY C+ Y + F CRK+Q F++
Sbjct: 81 PFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109
>sp|Q9DCJ5|NDUA8_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Mus
musculus GN=Ndufa8 PE=1 SV=3
Length = 172
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 14 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTK 73
SSAVL A++ H G +C N EF+ C+ ++ +P +CL +G+ V C L + + C +
Sbjct: 21 SSAVLKAAAHHYGAQCDKTNKEFMLCRWEEKDPRRCLKEGKLVNGCALNFFRQIKSHCAE 80
Query: 74 EMDEYVGCL-YYHTNEFDFCRKEQQAFEK 101
EY CL Y + F CR++Q F++
Sbjct: 81 PFTEYWTCLDYSNMQLFRHCRQQQAKFDQ 109
>sp|P42029|NDUA8_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Bos
taurus GN=NDUFA8 PE=1 SV=2
Length = 172
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 14 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTK 73
SS+VL A++ H G +C N EF+ C+ ++ +P +CL++G+ V +C L + + + C +
Sbjct: 21 SSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNQCALEFFRQIKRHCAE 80
Query: 74 EMDEYVGCLYYHTNE-FDFCRKEQQAFEK 101
EY C+ Y + F CRK+Q F++
Sbjct: 81 PFTEYWTCIDYSGLQLFRRCRKQQAQFDE 109
>sp|P21976|NDUA8_NEUCR NADH-ubiquinone oxidoreductase 20.8 kDa subunit OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=B1O14.280 PE=1 SV=2
Length = 183
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 14 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEK--CLDKGRQVTRCVLGLLKDLHQKC 71
SSA L +++ IG RC+ N +F++CK ++P + CL +GR+VTRC ++ D+++ C
Sbjct: 32 SSAPLMSAAYFIGARCRDYNDDFMQCKNENPGKGEFECLKEGRRVTRCARSVIADINKSC 91
Query: 72 TKEMDEYVGCLYYHTNEFDFCRKEQQAFEK 101
+E ++ CL + + CR + K
Sbjct: 92 LEEFRKHWTCLEDNNQQLWQCRPAEWKLNK 121
>sp|Q54P46|NDUA8_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8
OS=Dictyostelium discoideum GN=ndufa8 PE=3 SV=1
Length = 104
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 14 SSAVLTASSKHIGLRCQHENVEFLKCK-QKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCT 72
+ A L A + C + KC+ +K +PE CL + V C +++++ + C
Sbjct: 5 TRAELVAQRDGVWAVCGEVFEAYEKCRMEKGSDPELCLRESTAVVGCSQKVMREIVKNCQ 64
Query: 73 KEMDEYVGCLYYHTNEFDFCRKEQQAF 99
KE++E V C+ + C +E +AF
Sbjct: 65 KELNESVKCIEENNMRTIPCEEENKAF 91
>sp|A4QP73|TTC19_DANRE Tetratricopeptide repeat protein 19, mitochondrial OS=Danio rerio
GN=ttc19 PE=2 SV=2
Length = 403
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 40 KQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYYHTNEFDFCRKEQ 96
KQKD PE D+ R+ TR +LGL D + ++G + + C++EQ
Sbjct: 233 KQKDLPPESLSDEERKDTRLLLGLSLDARARYLAANHRFIGACRDYRHALQICQEEQ 289
>sp|Q2UG94|MED5_ASPOR Mediator of RNA polymerase II transcription subunit 5
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=NUT1 PE=3 SV=2
Length = 1013
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 5 VDPSGDPIPSSAVLTASSKHIGLRCQHENVEFLKCKQKDP 44
VDP+ +P+P VLT L QHENV K +KDP
Sbjct: 859 VDPNKEPLPRCPVLTLRD---ALNLQHENVP--KLSEKDP 893
>sp|P46863|KL61_DROME Bipolar kinesin KRP-130 OS=Drosophila melanogaster GN=Klp61F PE=1
SV=2
Length = 1066
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 49 CLDKGRQVTRCVLGL--LKDLHQKCTKEMDEYVGCLYYHTNEFD-FCRKEQQAFE 100
CLD+G V C + +K+L+QK KE +E VG + H N+ + C++ +Q E
Sbjct: 800 CLDQG--VANCSMLQVHMKNLNQKYEKETNENVGSVRVHHNQVEIICQESKQQLE 852
>sp|A1CGW7|MED5_ASPCL Mediator of RNA polymerase II transcription subunit 5
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=nut1 PE=3 SV=2
Length = 1020
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 5 VDPSGDPIPSSAVLTASSKHIGLRCQHENVEFLKCKQKDP 44
VDPS + +P AVLT L QHENV K +KDP
Sbjct: 864 VDPSKEALPRCAVLTLRD---ALALQHENVP--KLAEKDP 898
>sp|O27496|SYR_METTH Arginine--tRNA ligase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=argS PE=3 SV=1
Length = 560
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 51 DKGRQVTRCVLGLLK---DLHQKCTKEMDEYVGCLYYHTNE 88
D GRQ+ V GLL DL +MD VG LY+ N+
Sbjct: 161 DMGRQIAMIVWGLLNLDGDLEDYPGDKMDHRVGKLYFEVNQ 201
>sp|Q2M2S5|COA6_BOVIN Cytochrome c oxidase assembly factor 6 homolog OS=Bos taurus
GN=COA6 PE=3 SV=1
Length = 79
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 68 HQKCTKEMDEYVGCLYYHTNEFDFCRKEQQAFEKTCP 104
Q C DEY CL +T + C+K + +FE +CP
Sbjct: 9 RQACWGARDEYWKCLDENTEDASKCKKLRSSFESSCP 45
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,620,037
Number of Sequences: 539616
Number of extensions: 1568501
Number of successful extensions: 2852
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2835
Number of HSP's gapped (non-prelim): 25
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)