Query 034013
Match_columns 106
No_of_seqs 106 out of 151
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:50:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034013.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034013hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lql_A Coiled-coil-helix-coile 100.0 5.7E-33 1.9E-37 195.6 1.9 87 16-102 2-92 (113)
2 1v54_H AED, cytochrome C oxida 96.2 0.0071 2.4E-07 40.2 4.7 38 68-105 26-66 (85)
3 2lql_A Coiled-coil-helix-coile 90.6 0.096 3.3E-06 36.1 1.5 40 63-102 7-47 (113)
4 1ei0_A P8MTCP1; helix-turn-hel 89.4 0.45 1.5E-05 27.0 3.5 34 70-103 2-35 (38)
5 1hp8_A HU-P8; leukemia, cystei 75.2 2.7 9.3E-05 26.8 3.2 34 70-103 6-39 (68)
6 2lqt_A Coiled-coil-helix-coile 73.0 0.81 2.8E-05 30.5 0.3 32 49-81 16-47 (85)
7 2lqt_A Coiled-coil-helix-coile 54.1 15 0.00051 24.3 3.7 26 70-95 15-40 (85)
8 3cx5_F Cytochrome B-C1 complex 52.6 12 0.00042 26.9 3.3 36 49-84 90-135 (146)
9 1pp9_H Ubiquinol-cytochrome C 50.1 4.3 0.00015 26.3 0.5 17 69-85 52-68 (78)
10 3tgu_H Mitochondrial ubiquinol 41.7 7.2 0.00025 25.1 0.6 17 68-84 50-66 (77)
11 1u96_A Cytochrome C oxidase co 28.4 34 0.0012 21.8 2.1 17 70-86 46-62 (69)
12 3bkd_A Transmembrane domain of 21.1 42 0.0014 17.6 1.2 13 14-26 1-13 (26)
13 2ld7_B Paired amphipathic heli 20.3 1E+02 0.0035 19.2 3.2 33 56-88 7-41 (75)
No 1
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=99.97 E-value=5.7e-33 Score=195.62 Aligned_cols=87 Identities=14% Similarity=0.387 Sum_probs=71.9
Q ss_pred HHHHHhhHHHHhhchhhhHhhhcccc--cCCChhhhHhhchhhhhhHHH--HHHHHHHHhHHHHHHHHhHhhhcCCcchh
Q 034013 16 AVLTASSKHIGLRCQHENVEFLKCKQ--KDPNPEKCLDKGRQVTRCVLG--LLKDLHQKCTKEMDEYVGCLYYHTNEFDF 91 (106)
Q Consensus 16 a~L~aaa~~ig~~C~~~n~~FMlCK~--E~~dP~~CL~EGr~VT~Ca~~--~l~~ik~~C~~ef~~y~~CLd~~n~~~~~ 91 (106)
++|.+++++||++|..+|++||+|+. +++||++||+||++||+|+.+ ||++|+++|.++|++||+||++|+++++.
T Consensus 2 ~~l~aa~~~vak~C~~~~~~f~~C~~~~~~~dp~~Cl~eg~~vt~Ca~~~p~~~~I~~~C~~ef~~y~~CL~~n~~~~~~ 81 (113)
T 2lql_A 2 SHMQAALEVTARYCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQCTSSHPIIRQIRQACAQPFEAFEECLRQNEAAVGN 81 (113)
T ss_dssp ------------CCHHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHCTTCTTT
T ss_pred cHHHHHHHHHHHHccHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHccccHHH
Confidence 57899999999999999999999975 456899999999999999998 99999999999999999999999999999
Q ss_pred hHHHHHHHHhh
Q 034013 92 CRKEQQAFEKT 102 (106)
Q Consensus 92 CRk~Q~~fd~~ 102 (106)
||++|++|++|
T Consensus 82 Cr~~~~~f~~C 92 (113)
T 2lql_A 82 CAEHMRRFLQC 92 (113)
T ss_dssp CCSHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 2
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...
Probab=96.20 E-value=0.0071 Score=40.22 Aligned_cols=38 Identities=13% Similarity=0.547 Sum_probs=34.8
Q ss_pred HHHhHHHHHHHHhH---hhhcCCcchhhHHHHHHHHhhCCC
Q 034013 68 HQKCTKEMDEYVGC---LYYHTNEFDFCRKEQQAFEKTCPL 105 (106)
Q Consensus 68 k~~C~~ef~~y~~C---Ld~~n~~~~~CRk~Q~~fd~~~p~ 105 (106)
.++|..-++.|+.| |+.++.+...|.+..+.|.+.||.
T Consensus 26 ~k~Cw~~y~df~~C~~~l~~~ged~~~C~~~~~~y~slCP~ 66 (85)
T 1v54_H 26 TRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPI 66 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcChH
Confidence 47999999999999 666888999999999999999995
No 3
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=90.60 E-value=0.096 Score=36.13 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=28.6
Q ss_pred HHHHHHHHhHHHHHHHHhHhhhcC-CcchhhHHHHHHHHhh
Q 034013 63 LLKDLHQKCTKEMDEYVGCLYYHT-NEFDFCRKEQQAFEKT 102 (106)
Q Consensus 63 ~l~~ik~~C~~ef~~y~~CLd~~n-~~~~~CRk~Q~~fd~~ 102 (106)
.+..|-++|.+++.+|.+|+..|. .+-..|.+++.++.+|
T Consensus 7 a~~~vak~C~~~~~~f~~C~~~~~~~dp~~Cl~eg~~vt~C 47 (113)
T 2lql_A 7 ALEVTARYCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQC 47 (113)
T ss_dssp -------CCHHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 455667889999999999997664 4689999999988765
No 4
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=89.36 E-value=0.45 Score=26.99 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=29.7
Q ss_pred HhHHHHHHHHhHhhhcCCcchhhHHHHHHHHhhC
Q 034013 70 KCTKEMDEYVGCLYYHTNEFDFCRKEQQAFEKTC 103 (106)
Q Consensus 70 ~C~~ef~~y~~CLd~~n~~~~~CRk~Q~~fd~~~ 103 (106)
.|..+-.++-.||..|+.+.++|...=.++.++|
T Consensus 2 pC~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc 35 (38)
T 1ei0_A 2 PCQKQAAEIQKCLQANSYLESKCQAVIQELKKCA 35 (38)
T ss_dssp CSHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 4778888999999999999999999888887775
No 5
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=75.23 E-value=2.7 Score=26.78 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=21.5
Q ss_pred HhHHHHHHHHhHhhhcCCcchhhHHHHHHHHhhC
Q 034013 70 KCTKEMDEYVGCLYYHTNEFDFCRKEQQAFEKTC 103 (106)
Q Consensus 70 ~C~~ef~~y~~CLd~~n~~~~~CRk~Q~~fd~~~ 103 (106)
.|..+-.+.-.||..|+.+.++|...=.++.++|
T Consensus 6 PC~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc 39 (68)
T 1hp8_A 6 PCQKQACEIQKCLQANSYMESKCQAVIQELRKCC 39 (68)
T ss_dssp TTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3556666666677777666666666665555554
No 6
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=72.98 E-value=0.81 Score=30.51 Aligned_cols=32 Identities=28% Similarity=0.623 Sum_probs=16.0
Q ss_pred hHhhchhhhhhHHHHHHHHHHHhHHHHHHHHhH
Q 034013 49 CLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGC 81 (106)
Q Consensus 49 CL~EGr~VT~Ca~~~l~~ik~~C~~ef~~y~~C 81 (106)
|++|..+-.+|-.+---+ +..|.+-|++|-.|
T Consensus 16 C~~e~~~S~kCL~~n~yD-r~~C~~yF~~Yk~C 47 (85)
T 2lqt_A 16 CLSESDASTRCLDENNYD-RERCSTYFLRYKNC 47 (85)
T ss_dssp CHHHHHHHHHHHHHTTTC-TTTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCcc-HHHHHHHHHHHHHH
Confidence 555555555554432222 44555555555555
No 7
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=54.15 E-value=15 Score=24.30 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=21.9
Q ss_pred HhHHHHHHHHhHhhhcCCcchhhHHH
Q 034013 70 KCTKEMDEYVGCLYYHTNEFDFCRKE 95 (106)
Q Consensus 70 ~C~~ef~~y~~CLd~~n~~~~~CRk~ 95 (106)
.|.+|-++-.+||+.|+.+-+.|..-
T Consensus 15 PC~~e~~~S~kCL~~n~yDr~~C~~y 40 (85)
T 2lqt_A 15 PCLSESDASTRCLDENNYDRERCSTY 40 (85)
T ss_dssp CCHHHHHHHHHHHHHTTTCTTTTHHH
T ss_pred ccHHHHHHHHHHHHHcCccHHHHHHH
Confidence 49999999999999999876666543
No 8
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F*
Probab=52.65 E-value=12 Score=26.93 Aligned_cols=36 Identities=11% Similarity=0.080 Sum_probs=24.4
Q ss_pred hHhhchhhhhhHHHHHHHH----------HHHhHHHHHHHHhHhhh
Q 034013 49 CLDKGRQVTRCVLGLLKDL----------HQKCTKEMDEYVGCLYY 84 (106)
Q Consensus 49 CL~EGr~VT~Ca~~~l~~i----------k~~C~~ef~~y~~CLd~ 84 (106)
|.+.-...-.|+-.|=+.. +.+|..+|-.||+|+|+
T Consensus 90 C~~~~~~ydeCveRV~s~~e~~G~~~~~~~EdC~eE~Fdl~hCvD~ 135 (146)
T 3cx5_F 90 GKALVHHYEECAERVKIQQQQPGYADLEHKEDCVEEFFHLQHYLDT 135 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGCCSCCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHccccccccccCCCCcccHHHHHHHHhhHhh
Confidence 4444444556666664433 46899999999999986
No 9
>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB: 1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H* 1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H* 2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ...
Probab=50.13 E-value=4.3 Score=26.26 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=15.1
Q ss_pred HHhHHHHHHHHhHhhhc
Q 034013 69 QKCTKEMDEYVGCLYYH 85 (106)
Q Consensus 69 ~~C~~ef~~y~~CLd~~ 85 (106)
.+|..+|-.||+|+|+-
T Consensus 52 e~C~ee~fd~~hCvD~C 68 (78)
T 1pp9_H 52 EDCTEELLDFLHARDHC 68 (78)
T ss_dssp CCSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHh
Confidence 58999999999999863
No 10
>3tgu_H Mitochondrial ubiquinol-cytochrome C reductase 11 protein, complex III subunit VIII...; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_H* 3h1i_H* 3h1h_H* 3h1k_H* 3h1l_H* 3h1j_H* 3l71_H* 3l72_H* 3l73_H* 3l74_H* 3l75_H* 3l70_H*
Probab=41.74 E-value=7.2 Score=25.11 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=14.6
Q ss_pred HHHhHHHHHHHHhHhhh
Q 034013 68 HQKCTKEMDEYVGCLYY 84 (106)
Q Consensus 68 k~~C~~ef~~y~~CLd~ 84 (106)
+.+|.+||-.||.|+|+
T Consensus 50 ~e~C~eE~Fd~~hCvD~ 66 (77)
T 3tgu_H 50 EEQCTEELFDFLHARDH 66 (77)
T ss_dssp CCCSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 46799999999999986
No 11
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=28.40 E-value=34 Score=21.76 Aligned_cols=17 Identities=24% Similarity=0.563 Sum_probs=15.2
Q ss_pred HhHHHHHHHHhHhhhcC
Q 034013 70 KCTKEMDEYVGCLYYHT 86 (106)
Q Consensus 70 ~C~~ef~~y~~CLd~~n 86 (106)
+|.+.+.+|+.||....
T Consensus 46 ~C~~lIeahk~CMr~~G 62 (69)
T 1u96_A 46 KCKEFIEKYKECMKGYG 62 (69)
T ss_dssp GGHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 89999999999998654
No 12
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=21.08 E-value=42 Score=17.55 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=10.1
Q ss_pred chHHHHHhhHHHH
Q 034013 14 SSAVLTASSKHIG 26 (106)
Q Consensus 14 ssa~L~aaa~~ig 26 (106)
||.||..+|..||
T Consensus 1 ssDplv~aa~iiG 13 (26)
T 3bkd_A 1 SSDPLVVAASIMG 13 (26)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCcchhHHHHHH
Confidence 5678888888877
No 13
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=20.25 E-value=1e+02 Score=19.20 Aligned_cols=33 Identities=9% Similarity=0.253 Sum_probs=26.6
Q ss_pred hhhhHHHHHHHHHHH--hHHHHHHHHhHhhhcCCc
Q 034013 56 VTRCVLGLLKDLHQK--CTKEMDEYVGCLYYHTNE 88 (106)
Q Consensus 56 VT~Ca~~~l~~ik~~--C~~ef~~y~~CLd~~n~~ 88 (106)
.+.=++.||.+||+. ..+.++++-+||.-++++
T Consensus 7 ~~~de~~Ff~kVK~~l~~~~~Y~eFLk~lnlf~q~ 41 (75)
T 2ld7_B 7 GVGTESLFFDKVRKALRSAEAYENFLRCLVIFNQE 41 (75)
T ss_dssp TSSHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhc
Confidence 344467899999876 578999999999988875
Done!