BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034015
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J3W|A Chain A, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex.
pdb|2J3W|C Chain C, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex
Length = 142
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 25/99 (25%)
Query: 7 VVGHQNNPLYIQSF------TEADDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F DD L+ I H +LD+VDE + N K+ N
Sbjct: 11 IVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 70
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD 94
E F V ++T ++FI++ DVR D
Sbjct: 71 EWF-----------VSAFVTAGHMRFIMLH---DVRQED 95
>pdb|1H3Q|A Chain A, Crystal Sturcture Of Sedl At 2.4 Angstroms Resolution
Length = 140
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 25/99 (25%)
Query: 7 VVGHQNNPLYIQSF------TEADDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD 94
E F V ++T ++FI++ DVR D
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DVRQED 93
>pdb|1P9E|A Chain A, Crystal Structure Analysis Of Methyl Parathion Hydrolase
From Pseudomonas Sp Wbc-3
pdb|1P9E|B Chain B, Crystal Structure Analysis Of Methyl Parathion Hydrolase
From Pseudomonas Sp Wbc-3
Length = 331
Score = 28.9 bits (63), Expect = 0.68, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 40 VDERVNNPK-KSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTT 86
VD+R+N P K+ L ++F P E V GYL NT K +LV T
Sbjct: 69 VDKRLNQPAPKTQSALAKSFQKA--PLET-SVTGYLVNTGSKLVLVDT 113
>pdb|4AHW|A Chain A, Flo5a Showing A Heptanuclear Gadolinium Cluster On Its
Surface
pdb|4AHY|A Chain A, Flo5a Cocrystallized With 3 Mm Gdac3
pdb|4AHZ|A Chain A, Flo5a Showing A Heptanuclear Gadolinium Cluster On Its
Surface After 60 Min Of Soaking
pdb|4AI0|A Chain A, Flo5a Showing A Heptanuclear Gadolinium Cluster On Its
Surface After 9 Min Of Soaking
pdb|4AI1|A Chain A, Flo5a Showing A Heptanuclear Gadolinium Cluster On Its
Surface After 19 Min Of Soaking
pdb|4AI2|A Chain A, Flo5a Showing A Heptanuclear Gadolinium Cluster On Its
Surface After 41 Min Of Soaking
pdb|4AI3|A Chain A, Flo5a Showing A Heptanuclear Gadolinium Cluster On Its
Surface After 60 Min Of Soaking
pdb|4AHX|A Chain A, Flo5a Showing A Trinuclear Gadolinium Cluster On Its
Surface
Length = 270
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 63 YPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNVSVTISFKC 106
Y Y YGY + TK+ + TD+ + D ++ VS + +F C
Sbjct: 53 YSNAAYMAYGYASKTKLGSVGGQTDISI-DYNIPCVSSSGTFPC 95
>pdb|2XJV|A Chain A, X-Ray Structure Of The N-Terminal Domain Of The Flocculin
Flo5 From Saccharomyces Cerevisiae With Mutation D201t
In Complex With Calcium And Glucose
Length = 258
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 63 YPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNVSVTISFKC 106
Y Y YGY + TK+ + TD+ + D ++ VS + +F C
Sbjct: 41 YSNAAYMAYGYASKTKLGSVGGQTDISI-DYNIPCVSSSGTFPC 83
>pdb|2XJU|A Chain A, X-Ray Structure Of The N-Terminal Domain Of The Flocculin
Flo5 From Saccharomyces Cerevisiae With Mutation S227a
In Complex With Calcium And A1,2-Mannobiose
Length = 258
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 63 YPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNVSVTISFKC 106
Y Y YGY + TK+ + TD+ + D ++ VS + +F C
Sbjct: 41 YSNAAYMAYGYASKTKLGSVGGQTDISI-DYNIPCVSSSGTFPC 83
>pdb|2XJP|A Chain A, X-Ray Structure Of The N-Terminal Domain Of The Flocculin
Flo5 From Saccharomyces Cerevisiae In Complex With
Calcium And Mannose
pdb|2XJQ|A Chain A, X-Ray Structure Of The N-Terminal Domain Of The Flocculin
Flo5 From Saccharomyces Cerevisiae
pdb|2XJR|A Chain A, X-Ray Structure Of The N-Terminal Domain Of The Flocculin
Flo5 From Saccharomyces Cerevisiae In Complex With
Calcium And Man5(D2-D3)
pdb|2XJS|A Chain A, X-Ray Structure Of The N-Terminal Domain Of The Flocculin
Flo5 From Saccharomyces Cerevisiae In Complex With
Calcium And A1,2-Mannobiose
pdb|2XJT|A Chain A, X-Ray Structure Of The N-Terminal Domain Of The Flocculin
Flo5 From Saccharomyces Cerevisiae In Complex With
Calcium And Man5(D1)
Length = 258
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 63 YPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNVSVTISFKC 106
Y Y YGY + TK+ + TD+ + D ++ VS + +F C
Sbjct: 41 YSNAAYMAYGYASKTKLGSVGGQTDISI-DYNIPCVSSSGTFPC 83
>pdb|4DY9|A Chain A, Leishmania Major Peroxidase Is A Cytochrome C Peroxidase
pdb|4GED|B Chain B, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 113
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 38 DVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTK 78
+V+D + NPKK P +F G+ P E V YL K
Sbjct: 73 EVLDVYLENPKKFMPGTKMSFAGIKKPQERADVIAYLETLK 113
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 82 ILVTTDLDVRDADVRNVSVTISF 104
+L+TTDL R DV+ VS+ I++
Sbjct: 333 VLITTDLLARGIDVQQVSLVINY 355
>pdb|2YK3|A Chain A, Crithidia Fasciculata Cytochrome C
pdb|2YK3|B Chain B, Crithidia Fasciculata Cytochrome C
pdb|2YK3|C Chain C, Crithidia Fasciculata Cytochrome C
Length = 114
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 38 DVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTK 78
DV+D + NP K P +F G+ P E V YL K
Sbjct: 73 DVLDVYLENPXKFMPGTKMSFAGMKKPQERADVIAYLETLK 113
>pdb|3ZSS|A Chain A, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|B Chain B, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|C Chain C, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZSS|D Chain D, Apo Form Of Glge Isoform 1 From Streptomyces Coelicolor
pdb|3ZST|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With
Alpha-Cyclodextrin Bound
pdb|3ZST|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With
Alpha-Cyclodextrin Bound
pdb|3ZT5|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT5|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With Maltose
Bound
pdb|3ZT6|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT6|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With Alpha-
Cyclodextrin And Maltose Bound
pdb|3ZT7|A Chain A, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|B Chain B, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|C Chain C, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
pdb|3ZT7|D Chain D, Glge Isoform 1 From Streptomyces Coelicolor With
Beta-Cyclodextrin And Maltose Bound
Length = 695
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 43 RVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNVSVTI 102
R+N ++ P L + +PT+ +V Y +LV +LD R VS+ +
Sbjct: 578 RLNTIRRENPALRQLRDLHFHPTDKEEVIAYSKRQGSNTVLVVVNLDPRHTQEATVSLDM 637
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 82 ILVTTDLDVRDADVRNVSVTISF 104
+L+TTDL R DV+ VS+ I++
Sbjct: 307 VLITTDLLARGIDVQQVSLVINY 329
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 82 ILVTTDLDVRDADVRNVSVTISF 104
+LVTT++ R DV VSV I+F
Sbjct: 335 VLVTTNVCARGIDVEQVSVVINF 357
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 82 ILVTTDLDVRDADVRNVSVTISF 104
+LVTT++ R DV VSV I+F
Sbjct: 356 VLVTTNVCARGIDVEQVSVVINF 378
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 82 ILVTTDLDVRDADVRNVSVTISF 104
+LVTT++ R DV VSV I+F
Sbjct: 319 VLVTTNVCARGIDVEQVSVVINF 341
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 82 ILVTTDLDVRDADVRNVSVTISF 104
+LVTT++ R DV VSV I+F
Sbjct: 386 VLVTTNVCARGIDVEQVSVVINF 408
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 82 ILVTTDLDVRDADVRNVSVTISF 104
IL++TDL R DV+ VS+ I++
Sbjct: 313 ILISTDLLARGIDVQQVSLVINY 335
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 25.4 bits (54), Expect = 7.3, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 82 ILVTTDLDVRDADVRNVSVTISF 104
IL++TDL R DV+ VS+ I++
Sbjct: 312 ILISTDLLARGIDVQQVSLVINY 334
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,248,479
Number of Sequences: 62578
Number of extensions: 121846
Number of successful extensions: 341
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 327
Number of HSP's gapped (non-prelim): 22
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)