BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034015
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54CU7|TPC2L_DICDI Trafficking protein particle complex subunit 2-like protein
OS=Dictyostelium discoideum GN=trappc2l PE=3 SV=1
Length = 140
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 77/99 (77%), Gaps = 7/99 (7%)
Query: 2 IACVAVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETF 58
I CVA+VG NNPL+IQ F+ + ++ LKLH+IVHCSLD+++++ + KK ++ +
Sbjct: 4 IVCVAIVGKGNNPLFIQDFSSSITDENKLKLHYIVHCSLDIIEDKPGSNKKLP---SDMY 60
Query: 59 LGLLYPTENYKVYGYLTNTKVKFILVTTDL-DVRDADVR 96
LGLLYPTE+YKVYGYLTNTK+KFI+V D D++D+D++
Sbjct: 61 LGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLK 99
>sp|B2RYU6|TPC2L_RAT Trafficking protein particle complex subunit 2-like protein
OS=Rattus norvegicus GN=Trappc2l PE=2 SV=1
Length = 139
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 75/100 (75%), Gaps = 3/100 (3%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M C+AV+ +N PLYI+S T ++ LK H++VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R++
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSM 99
>sp|Q9UL33|TPC2L_HUMAN Trafficking protein particle complex subunit 2-like protein
OS=Homo sapiens GN=TRAPPC2L PE=1 SV=1
Length = 140
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 75/100 (75%), Gaps = 3/100 (3%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M C+AV+ +N PLYI+S T ++ LK H++VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R++
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSM 99
>sp|Q9JME7|TPC2L_MOUSE Trafficking protein particle complex subunit 2-like protein
OS=Mus musculus GN=Trappc2l PE=2 SV=1
Length = 139
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 74/100 (74%), Gaps = 3/100 (3%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M C+AV+ +N PLYI+S T + LK H++VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCIAVIAKENYPLYIRS-TPTESELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R++
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSM 99
>sp|Q5M8X5|TPC2L_XENTR Trafficking protein particle complex subunit 2-like protein
OS=Xenopus tropicalis GN=trappc2l PE=2 SV=1
Length = 139
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 74/100 (74%), Gaps = 3/100 (3%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M CVAV+ +N PLYI+S T ++ LK H+ VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCVAVIAKENYPLYIRS-TPTENQLKFHYTVHTSLDVVDEKISAMGKAVMDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R++
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRSM 99
>sp|A6H7F7|TPC2L_BOVIN Trafficking protein particle complex subunit 2-like protein
OS=Bos taurus GN=TRAPPC2L PE=2 SV=1
Length = 139
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 74/100 (74%), Gaps = 3/100 (3%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M CVAV+ +N PLYI+S ++ LK H++VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCVAVIAKENYPLYIRSIP-TENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R++
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSM 99
>sp|B5XGE7|TPC2L_SALSA Trafficking protein particle complex subunit 2-like protein
OS=Salmo salar GN=trappc2l PE=2 SV=1
Length = 139
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 72/100 (72%), Gaps = 3/100 (3%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M C+AV+ +N PLYI+S + LK H+ VH SLDVV+E+++ K+ E +LG
Sbjct: 1 MAVCIAVIAKENYPLYIRS-VPVQNELKFHYTVHTSLDVVEEKISAVGKAMADQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R++
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVIVVDSSNTSLRDNEIRSM 99
>sp|B5FXJ6|TPC2L_TAEGU Trafficking protein particle complex subunit 2-like protein
OS=Taeniopygia guttata GN=TRAPPC2L PE=2 SV=1
Length = 139
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 73/100 (73%), Gaps = 3/100 (3%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M C+AV+ +N PLYI+S ++ LK H+ VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCIAVIAKENYPLYIRS-VPTENELKFHYTVHTSLDVVDEKISAMGKALVDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRNV 98
LLYPTE+YKVYGY+TN+KVKF++V +++ +RD ++R++
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSM 99
>sp|Q5RBK9|TPC2L_PONAB Trafficking protein particle complex subunit 2-like protein
OS=Pongo abelii GN=TRAPPC2L PE=3 SV=1
Length = 109
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
M C+AV+ +N PLYI+S T ++ LK H++VH SLDVVDE+++ K+ E +LG
Sbjct: 1 MAVCIAVIAKENYPLYIRS-TPTENKLKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59
Query: 61 LLYPTENYKVYGYLTNT 77
LLYPTE+YK++ L N+
Sbjct: 60 LLYPTEDYKMFRKLHNS 76
>sp|O13732|YDOC_SCHPO Uncharacterized protein C15A10.12c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC15A10.12c PE=4 SV=2
Length = 148
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 57/101 (56%), Gaps = 7/101 (6%)
Query: 2 IACVAVVGHQNNPLYIQSFTEADDAL--KLHHIVHCSLDVVDERVNNPKKSGPTLNETFL 59
+ +++ G ++ LY++ + L + ++ SLDV+++ VN+ +++ N+ FL
Sbjct: 6 LVFLSIAGPKDEQLYLEIIDPKEKHLLARYQYLGELSLDVINDLVNDGERTS---NDCFL 62
Query: 60 GLLYPTENYKVYGYLTNTKVKFILVTTDLD--VRDADVRNV 98
GLL E+ Y + +NTKVKFIL D V++ ++R +
Sbjct: 63 GLLGVEEDISTYAFYSNTKVKFILAVKAPDYVVKETEIRQL 103
>sp|O02173|TPPC2_CAEEL Probable trafficking protein particle complex subunit 2
OS=Caenorhabditis elegans GN=sedl-1 PE=1 SV=1
Length = 141
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 15/89 (16%)
Query: 6 AVVGHQNNPLYIQSF-------TEADDALKL-HHIVHCSLDVVDERVNNPKKSGPTLNET 57
A++GH + P++ F E++ L H+I H +LD+VDE T ++
Sbjct: 9 AIIGHCDQPIFEMDFPVGEKKTKESEGTRHLNHYIGHAALDIVDEH-------ALTTSQM 61
Query: 58 FLGLLYPTENYKVYGYLTNTKVKFILVTT 86
+L ++ + V ++T ++++FI++ T
Sbjct: 62 YLKMVDKFNEWYVSAFVTASRIRFIMLHT 90
>sp|A7RVK7|TPPC2_NEMVE Probable trafficking protein particle complex subunit 2
OS=Nematostella vectensis GN=v1g94938 PE=3 SV=1
Length = 153
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 6 AVVGHQNNPLYIQSFTE-----ADDALKLHH-IVHCSLDVVDERVNNPK----KSGPTLN 55
A+VGH +NP+Y + F + ++D L+ IVH +LD+VDE + KS N
Sbjct: 8 AIVGHYDNPVYEKEFNQQMKMDSNDHRHLNQFIVHAALDLVDESMWGTTGMYLKSVDKFN 67
Query: 56 ETFLGLLYP 64
E F+ P
Sbjct: 68 EWFVSAFDP 76
>sp|Q9VUZ1|TPPC2_DROME Probable trafficking protein particle complex subunit 2
OS=Drosophila melanogaster GN=CG5161 PE=2 SV=2
Length = 139
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 22/89 (24%)
Query: 7 VVGHQNNPLYIQSFTEADDALK-------LHHIVHCSLDVVDER----VNNPKKSGPTLN 55
+VG +NP+Y + F+ + L+ I H +LD+VDE N KS N
Sbjct: 8 IVGQNDNPIYEKEFSTVNKELRKEDHRHLTQFIAHAALDLVDEHKWKTANMQLKSIDRFN 67
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILV 84
+ F+ ++T ++++FI+V
Sbjct: 68 QWFVS-----------AFITASQIRFIIV 85
>sp|Q54RV6|TPPC2_DICDI Trafficking protein particle complex subunit 2 OS=Dictyostelium
discoideum GN=trappc2 PE=3 SV=1
Length = 133
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 7 VVGHQNNPLYIQSF---TEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLY 63
++G +NPLY F + + L +I H SLD+V+E V N +L ++
Sbjct: 8 IIGKNDNPLYEIEFPITVQKKETYVLQYIAHGSLDIVEEHVWKS-------NNMYLKIID 60
Query: 64 PTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNVSVTI 102
++ ++T +KF+L+ D DA ++N V +
Sbjct: 61 KFNKVQISSFVTAGHIKFLLLHEKKD-EDA-IKNFFVEV 97
>sp|F1SRI0|TPPC2_PIG Trafficking protein particle complex subunit 2 OS=Sus scrofa
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 25/99 (25%)
Query: 7 VVGHQNNPLYIQSFTEA------DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F A DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD 94
E F V ++T ++FI++ DVR D
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DVRQED 93
>sp|Q3T0F2|TPPC2_BOVIN Trafficking protein particle complex subunit 2 OS=Bos taurus
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 25/99 (25%)
Query: 7 VVGHQNNPLYIQSFTEA------DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F A DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD 94
E F V ++T ++FI++ DVR D
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DVRQED 93
>sp|Q5RES6|TPPC2_PONAB Trafficking protein particle complex subunit 2 OS=Pongo abelii
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 25/99 (25%)
Query: 7 VVGHQNNPLYIQSFTEA------DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F A DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD 94
E F V ++T ++FI++ DVR D
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DVRQED 93
>sp|E2QV03|TPPC2_CANFA Trafficking protein particle complex subunit 2 OS=Canis
familiaris GN=TRAPPC2 PE=3 SV=1
Length = 140
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 25/99 (25%)
Query: 7 VVGHQNNPLYIQSFTEA------DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F A DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD 94
E F V ++T ++FI++ D+R D
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DIRQED 93
>sp|P0DI82|TPC2B_HUMAN Trafficking protein particle complex subunit 2 protein TRAPPC2P1
OS=Homo sapiens GN=TRAPPC2P1 PE=1 SV=1
Length = 140
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 25/99 (25%)
Query: 7 VVGHQNNPLYIQSFTEA------DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F A DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD 94
E F V ++T ++FI++ D+R D
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DIRQED 93
>sp|P0DI81|TPC2A_HUMAN Trafficking protein particle complex subunit 2 OS=Homo sapiens
GN=TRAPPC2 PE=1 SV=1
Length = 140
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 25/99 (25%)
Query: 7 VVGHQNNPLYIQSFTEA------DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F A DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD 94
E F V ++T ++FI++ D+R D
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DIRQED 93
>sp|Q28IG8|TPPC2_XENTR Trafficking protein particle complex subunit 2 OS=Xenopus
tropicalis GN=trappc2 PE=2 SV=1
Length = 140
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 25/99 (25%)
Query: 7 VVGHQNNPLYIQSF-----TEA-DDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F TE+ DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPQGKTESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD 94
E F V ++T ++FI++ DVR D
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DVRQED 93
>sp|Q9CQP2|TPPC2_MOUSE Trafficking protein particle complex subunit 2 OS=Mus musculus
GN=Trappc2 PE=1 SV=1
Length = 140
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 25/99 (25%)
Query: 7 VVGHQNNPLYIQSF------TEADDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD 94
E F V ++T ++FI++ DVR D
Sbjct: 69 EWF-----------VSAFVTAGHMRFIMLH---DVRQED 93
>sp|P0C588|CNNM4_RAT Metal transporter CNNM4 OS=Rattus norvegicus GN=Cnnm4 PE=1 SV=1
Length = 772
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 19 SFTEADDALKLHHIVHC---SLDVVDER-VNNPKKSGPTLNETFLGLLYPTENYKVYGYL 74
SFTE DDA +H+ +C + D+V +R VN + + + L +EN K+Y
Sbjct: 90 SFTEVDDAETVHNSTNCLELTKDLVVQRLVNVSRGNTSGMLVVITKFLRRSENMKLYALC 149
Query: 75 TNTK 78
T T+
Sbjct: 150 TRTR 153
>sp|Q9USZ5|TRS20_SCHPO Transport protein particle 20 kDa subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs20 PE=3 SV=1
Length = 136
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 1 MIACVAVVGHQNNPLYIQSF----TEADDALKLH---HIVHCSLDVVDERVNNPKKSGPT 53
M A A++G ++NP+Y + D +L H IVH SLD+VD+ T
Sbjct: 1 MTAYAAIIGTKDNPVYELEMGPINEKLDRSLNSHLNQFIVHSSLDIVDQL-------QWT 53
Query: 54 LNETFLGLLYPTENYKVYGYLTNTKVKFILV 84
N ++ + + Y+T + ++F+L+
Sbjct: 54 SNAFYMKTIDQFHEMYISAYVTPSNMRFMLL 84
>sp|Q38F76|IF4A_TRYB2 Probable eukaryotic initiation factor 4A OS=Trypanosoma brucei
brucei (strain 927/4 GUTat10.1) GN=Tb09.160.3270 PE=3
SV=1
Length = 404
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 66 ENYKVYGYLTNTKVKFILVTTDLDVRDADVRNVSVTISF 104
E KV G N + +LVTTDL R DV +V++ I+F
Sbjct: 306 EREKVMGTFRNGSSR-VLVTTDLVARGIDVHHVNIVINF 343
>sp|P38334|TRS20_YEAST Trafficking protein particle complex subunit 20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS20 PE=1
SV=1
Length = 175
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 1 MIACVAVVGHQNNPLYIQSFTEADDALKLHH--------IVHCSLDVVDE 42
M A++G ++NP+Y FT A++ I+H SLD+V++
Sbjct: 1 MPQYFAIIGKKDNPVYEIEFTNAENPQGFPQDLKELNPFILHASLDIVED 50
>sp|D3ZVF4|TPPC2_RAT Trafficking protein particle complex subunit 2 OS=Rattus
norvegicus GN=Trappc2 PE=3 SV=1
Length = 140
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 25/99 (25%)
Query: 7 VVGHQNNPLYIQSF-----TEADDALKL--HHIVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F TE+ D + I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPAGKTESKDEHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDAD 94
E F V ++T ++ I++ DVR D
Sbjct: 69 EWF-----------VSAFVTAGHMRLIMLH---DVRQED 93
>sp|Q873H9|SPB4_NEUCR ATP-dependent rRNA helicase spb-4 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=spb-4 PE=3 SV=1
Length = 654
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 60 GLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNVSVTI 102
G L P K Y NT +L+TTDL R D+ V + I
Sbjct: 333 GKLEPKVREKNYERFVNTTSPMVLLTTDLAARGLDIPQVDLVI 375
>sp|Q5ZKP4|TPPC2_CHICK Trafficking protein particle complex subunit 2 OS=Gallus gallus
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 7 VVGHQNNPLYIQSF------TEADDALKLHH-IVHCSLDVVDERV----NNPKKSGPTLN 55
+VGH +NP++ F DD L+ I H +LD+VDE + N K+ N
Sbjct: 9 IVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFN 68
Query: 56 ETFLG 60
E F+
Sbjct: 69 EWFVS 73
>sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum
GN=helB1 PE=2 SV=1
Length = 1151
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 78 KVKFILVTTDLDVRDADVRNVSVTISFKC 106
KVK IL+ T L R D++++++ ++F C
Sbjct: 805 KVKTILIATPLASRGLDIKDLNLVVNFDC 833
>sp|P00078|CYC_CRIFA Cytochrome c OS=Crithidia fasciculata PE=1 SV=2
Length = 114
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 38 DVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTK 78
DV+D + NPKK P +F G+ P E V YL K
Sbjct: 73 DVLDVYLENPKKFMPGTKMSFAGMKKPQERADVIAYLETLK 113
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,642,083
Number of Sequences: 539616
Number of extensions: 1497304
Number of successful extensions: 3369
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3342
Number of HSP's gapped (non-prelim): 35
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)