BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034017
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 69/100 (69%), Gaps = 5/100 (5%)
Query: 5 NGSVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVT 64
NG+V + + RL+S TKLFIGGLS+ T++ L+DAF G++++ KVI DR T
Sbjct: 18 NGNVPVTSMLGSLRLMS-----TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRET 72
Query: 65 GQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104
G+SRG+GFV F E AA AI EMDG L+GR+IRVN A+
Sbjct: 73 GRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 58/79 (73%)
Query: 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIK 86
+KLF+GGLS+ T+++ LK AF GE+ E VI DR TG+SRG+GFV F+ E +A AIK
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 87 EMDGLLLDGRNIRVNYAHK 105
EMDG L+GR IRVN A +
Sbjct: 95 EMDGKELNGRQIRVNLATE 113
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 67/103 (65%), Gaps = 2/103 (1%)
Query: 2 QWLNGSVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICD 61
+ LN V S F + S +KLFIGG++Y +E L++AF ++GE+++ +VI D
Sbjct: 17 KQLNAQVSLSSPSLFQAIR--CMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILD 74
Query: 62 RVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104
R TG+SRG+GFV F S AA AI+ +DG L GR ++VNYA+
Sbjct: 75 RETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 117
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 60/82 (73%)
Query: 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82
A+ + F+GGL + T++ L++AF ++G++I+ K+I DR TG+SRG+GFV FAS+ A
Sbjct: 2 ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMR 61
Query: 83 EAIKEMDGLLLDGRNIRVNYAH 104
+AI+ M+G LDGRNI VN A
Sbjct: 62 QAIEAMNGQDLDGRNITVNEAQ 83
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 59/85 (69%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
++ A+ + F+GGL++ TN L+ AF G++I+ KVI DR TG+SRG+GFV F+SE
Sbjct: 1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQ 60
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAH 104
+ +AI+ M+G LDGRNI VN A
Sbjct: 61 SMLDAIENMNGKELDGRNITVNQAQ 85
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 61/85 (71%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
++ A+ + F+GGL++ T+ L++AF +GEI++ KVI DR TG+SRG+GFV F+SE
Sbjct: 1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSEN 60
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAH 104
+ +AI+ M+G LDGRNI VN A
Sbjct: 61 SMLDAIENMNGKELDGRNITVNQAQ 85
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Query: 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEA 84
S +K+F+GG+SY T+E L++AF ++GE+++ K+I DR TG+SRG+ FV F S A A
Sbjct: 32 SSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNA 91
Query: 85 IKEMDGLLLDGRNIRVNYA 103
+ ++DG L GR IRVNYA
Sbjct: 92 M-QLDGQDLHGRRIRVNYA 109
>sp|P39697|RT19_ARATH 40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana
GN=RPS19 PE=1 SV=2
Length = 212
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 53/77 (68%)
Query: 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIK 86
TKL+IGGLS T+E LKDAF + E +V+ ++VTG+SRGYGFV F SE +A AI
Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90
Query: 87 EMDGLLLDGRNIRVNYA 103
M+G L+G NI VN A
Sbjct: 91 AMNGQELNGFNISVNVA 107
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 54/77 (70%)
Query: 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87
+ F+GGL++ TN+ L+ AF Q G+I + K+I DR TG+SRG+GFV F E + +AI+
Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66
Query: 88 MDGLLLDGRNIRVNYAH 104
M+G LDGRNI VN A
Sbjct: 67 MNGQELDGRNITVNEAQ 83
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 54/78 (69%)
Query: 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87
++++G + +D ++ L+ F +HG+++ +V+ DR +G+SRG+GFV +SEA EAI
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251
Query: 88 MDGLLLDGRNIRVNYAHK 105
+DG LDGR IRVN A +
Sbjct: 252 LDGQTLDGRTIRVNAAEE 269
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%)
Query: 17 TRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFA 76
T + + KLF+G L YD + L F Q G + +VI +R T +SRG+GFV +
Sbjct: 87 TEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMS 146
Query: 77 SEAAAGEAIKEMDGLLLDGRNIRVNYA 103
+ A +A++ L+GR + VN A
Sbjct: 147 TVEEADKAVELYSQYDLNGRLLTVNKA 173
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7
PE=1 SV=1
Length = 176
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 59/85 (69%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
++ + + F+GGL++ T++ L+ AF Q+G++I+ K+I DR TG+SRG+GFV F E
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAH 104
A +AI+ M+G LDGR+I VN A
Sbjct: 61 AMKDAIEGMNGQDLDGRSITVNEAQ 85
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 55/78 (70%)
Query: 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87
KLF+GGL+++T+E L+D F G I EV V+ DR T +SRG+GF+ F + A +A++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 88 MDGLLLDGRNIRVNYAHK 105
M+G LDGR IRV++A K
Sbjct: 67 MNGESLDGRQIRVDHAGK 84
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 59/86 (68%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ FG++G I+EV +I DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAHK 105
A +A ++M+G LDG+ I+V A K
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATK 86
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 59/85 (69%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
++ + + F+GGL++ T++ L+ AF Q+GE+++ K+I DR TG+SRG+GFV F E
Sbjct: 1 MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAH 104
+ +AI+ M+G LDGR+I VN A
Sbjct: 61 SMKDAIEGMNGQDLDGRSITVNEAQ 85
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%)
Query: 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87
KLFIGGL++DTNE L+ F ++G+I EV V+ DR T +SRG+GFV F + A +A+
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 88 MDGLLLDGRNIRVNYAHK 105
M+G +DGR IRV+ A K
Sbjct: 66 MNGKAVDGRQIRVDQAGK 83
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 58/85 (68%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
++ + + F+GGL++ T+E L+ AF Q GE+++ K+I DR TG+SRG+GFV F E
Sbjct: 1 MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAH 104
+ +AI+ M+G LDGR+I VN A
Sbjct: 61 SMKDAIEGMNGQDLDGRSITVNEAQ 85
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 57/83 (68%)
Query: 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82
A+ KLF+GGLS+DTNE L+ F ++G+I EV V+ DR T +SRG+GFV F + A
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 EAIKEMDGLLLDGRNIRVNYAHK 105
+A+ M+G +DGR IRV+ A K
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGK 84
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 57/83 (68%)
Query: 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82
A+ KLF+GGLS+DTNE L+ F ++G+I EV V+ DR T +SRG+GFV F + A
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 EAIKEMDGLLLDGRNIRVNYAHK 105
+A+ M+G +DGR IRV+ A K
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGK 84
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 57/83 (68%)
Query: 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82
A+ KLF+GGLS+DTNE L+ F ++G+I EV V+ DR T +SRG+GFV F + A
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 EAIKEMDGLLLDGRNIRVNYAHK 105
+A+ M+G +DGR IRV+ A K
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGK 84
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX
PE=2 SV=1
Length = 391
Score = 79.7 bits (195), Expect = 5e-15, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 59/86 (68%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ FG++G I+EV ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAHK 105
A +A ++M+G LDG+ I+V A K
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATK 86
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 79.7 bits (195), Expect = 5e-15, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 59/86 (68%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ FG++G I+EV ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAHK 105
A +A ++M+G LDG+ I+V A K
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATK 86
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 57/83 (68%)
Query: 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82
A+ KLF+GGLS+DTNE L+ F ++G+I EV V+ DR T +SRG+GFV F + A
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 EAIKEMDGLLLDGRNIRVNYAHK 105
+A+ M+G +DGR IRV+ A K
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGK 84
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 57/83 (68%)
Query: 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAG 82
A+ KLF+GGLS+DTNE L+ F ++G+I EV V+ DR T +SRG+GFV F + A
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 83 EAIKEMDGLLLDGRNIRVNYAHK 105
+A+ M+G +DGR IRV+ A K
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGK 84
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 79.3 bits (194), Expect = 6e-15, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 59/86 (68%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ FG++G I+EV ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAHK 105
A +A ++M+G LDG+ I+V A K
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATK 86
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 79.3 bits (194), Expect = 7e-15, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 59/86 (68%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ FG++G I+EV ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAHK 105
A +A ++M+G LDG+ I+V A K
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATK 86
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 52/77 (67%)
Query: 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87
+ F+GGL++ T + L+ F Q GE+I+ K+I DR TG+SRG+GFV F E + +AI E
Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66
Query: 88 MDGLLLDGRNIRVNYAH 104
M+G LDGR I VN A
Sbjct: 67 MNGKELDGRTITVNEAQ 83
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 79.0 bits (193), Expect = 8e-15, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 59/86 (68%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ FG++G I+E+ ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAHK 105
A +A ++M+G LDG+ I+V A K
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATK 86
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8
PE=1 SV=1
Length = 169
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 54/77 (70%)
Query: 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87
+ F+GGL++ TN+ L+ F Q G++I+ K+I DR +G+SRG+GFV F E A +AI+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 88 MDGLLLDGRNIRVNYAH 104
M+G LDGR I VN A
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 55/84 (65%)
Query: 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAA 81
D ++++G L +D + + L+ F +HG+++ +V+ DR TG+SRG+GFV +SE+
Sbjct: 144 DFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEV 203
Query: 82 GEAIKEMDGLLLDGRNIRVNYAHK 105
+AI +DG LDGR +RVN A +
Sbjct: 204 NDAIAALDGQTLDGRAVRVNVAEE 227
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
S+ KLF+G L YD + L F G + +VI +R T +SRG+GFV ++
Sbjct: 48 FSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVE 107
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYA 103
A +A++ ++G +DGR + VN A
Sbjct: 108 EAEKAVELLNGYDMDGRQLTVNKA 131
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 79.0 bits (193), Expect = 9e-15, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 59/86 (68%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ FG++G I+EV ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAHK 105
A +A ++M+G LDG+ I+V A K
Sbjct: 61 DAKDAARDMNGKSLDGKAIKVEQATK 86
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 54/78 (69%)
Query: 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87
KLF+GGL+++T+E L+D F G I EV V+ DR T +SRG+GF+ F + A A++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 88 MDGLLLDGRNIRVNYAHK 105
M+G LDGR IRV++A K
Sbjct: 67 MNGESLDGRQIRVDHAGK 84
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 54/78 (69%)
Query: 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87
KLF+GGL+++T+E L+D F G I EV V+ DR T +SRG+GF+ F + A + ++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 88 MDGLLLDGRNIRVNYAHK 105
M+G LDGR IRV++A K
Sbjct: 67 MNGESLDGRQIRVDHAGK 84
>sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus
GN=Rbmxl1 PE=3 SV=1
Length = 388
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/86 (44%), Positives = 58/86 (67%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ FG++G I+E+ ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAHK 105
A + ++M+G LDG+ I+V A K
Sbjct: 61 DAKDVARDMNGKSLDGKAIKVEQATK 86
>sp|P84586|RMXRL_RAT RNA-binding motif protein, X chromosome retrogene-like OS=Rattus
norvegicus GN=Rbmxrtl PE=3 SV=1
Length = 388
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/86 (44%), Positives = 58/86 (67%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ FG++G I+E+ ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAHK 105
A + ++M+G LDG+ I+V A K
Sbjct: 61 DAKDVARDMNGKSLDGKAIKVEQATK 86
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 52/77 (67%)
Query: 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87
++++G + + ++ L+ F +HG+++ +V+ DR TG+SRG+GFV ASEA +AI
Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290
Query: 88 MDGLLLDGRNIRVNYAH 104
+DG LDGR IRVN A
Sbjct: 291 LDGQSLDGRTIRVNVAE 307
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%)
Query: 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87
KLF+G L YD + L F Q G + +VI +R T QSRG+GFV ++ A +A++
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
Query: 88 MDGLLLDGRNIRVNYAHK 105
+ ++GR + VN A +
Sbjct: 197 YNRYDVNGRLLTVNKAAR 214
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 55/78 (70%)
Query: 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87
KLF+GGLS+DT+E L+ F ++G+I EV V+ DR T +SRG+GFV F + A +A+
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 88 MDGLLLDGRNIRVNYAHK 105
M+G +DGR IRV+ A K
Sbjct: 67 MNGKTVDGRQIRVDQAGK 84
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 55/78 (70%)
Query: 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87
KLFIGGL+++TNE L+ AF ++G I EV V+ DR T +SRG+GFV F + A +A+
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 88 MDGLLLDGRNIRVNYAHK 105
M+G +DGR IRV+ A K
Sbjct: 66 MNGKSVDGRQIRVDQAGK 83
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/86 (44%), Positives = 58/86 (67%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE L+ F ++G ++EV ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAHK 105
A +A +E++G LDG+ I+V A K
Sbjct: 61 DAKDAARELNGKALDGKPIKVEQATK 86
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2
SV=1
Length = 396
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/86 (44%), Positives = 58/86 (67%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +T+E L+ FG++G I EV ++ DR T +SRG+ F+ F S A
Sbjct: 1 MVEADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPA 60
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAHK 105
A A+++M+G LDG+ I+V A K
Sbjct: 61 DAKAAVRDMNGKSLDGKAIKVAQATK 86
>sp|O75526|RMXL2_HUMAN RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens
GN=RBMXL2 PE=1 SV=3
Length = 392
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 58/86 (67%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +T+E L+ FG++G I+EV ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAHK 105
A A ++M+G LDG+ I+V A K
Sbjct: 61 DAKAAARDMNGKSLDGKAIKVAQATK 86
>sp|P0DJD4|RBY1C_HUMAN RNA-binding motif protein, Y chromosome, family 1 member C OS=Homo
sapiens GN=RBMY1C PE=1 SV=1
Length = 496
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE +LK FG+HG I EV +I DR T +SRG+ F+ F + A
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAHK 105
A A K+M+G L G+ I+V A K
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAQK 85
>sp|Q4R813|RMXL2_MACFA RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis
GN=RBMXL2 PE=2 SV=1
Length = 394
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 58/86 (67%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +T+E L+ FG++G I+EV ++ DR T +SRG+ FV F S A
Sbjct: 1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 60
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAHK 105
A A ++M+G LDG+ I+V A K
Sbjct: 61 NAKAAARDMNGKSLDGKAIKVAQATK 86
>sp|Q15415|RBY1F_HUMAN RNA-binding motif protein, Y chromosome, family 1 member F/J
OS=Homo sapiens GN=RBMY1F PE=2 SV=2
Length = 496
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE +LK FG+HG I EV +I DR T +SRG+ F+ F + A
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAHK 105
A A K+M+G L G+ I+V A K
Sbjct: 60 DAKNAAKDMNGTSLHGKAIKVEQAKK 85
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E OS=Homo
sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE +LK FG+HG I EV +I DR T +SRG+ F+ F + A
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAHK 105
A A K+M+G L G+ I+V A K
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKK 85
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 54/78 (69%)
Query: 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87
KLF+GGL+++T E L+ F ++G++ EV V+ DR + +SRG+GFV F + A +A+
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 88 MDGLLLDGRNIRVNYAHK 105
M+G +DGR IRV+ A K
Sbjct: 67 MNGKSVDGRQIRVDQAGK 84
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D OS=Homo
sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE +LK FG+HG I EV +I DR T +SRG+ F+ F + A
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAHK 105
A A K+M+G L G+ I+V A K
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKK 85
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo
sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE +LK FG+HG I EV +I DR T +SRG+ F+ F + A
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAHK 105
A A K+M+G L G+ I+V A K
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKK 85
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 57/82 (69%)
Query: 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGE 83
+S ++++G LS+ ++ LK+ F + G +++ KV+ DR +G+SRG+GFV ++S +
Sbjct: 205 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVND 264
Query: 84 AIKEMDGLLLDGRNIRVNYAHK 105
AI ++G+ LDGR+IRV+ A +
Sbjct: 265 AIDSLNGIDLDGRSIRVSAAEE 286
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 4 LNGSVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRV 63
L V + RF+ L KLF+G L + + L F + G + V+VI D++
Sbjct: 72 LEDDVEVAEQPRFSEDL-------KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKL 124
Query: 64 TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101
+G+SRG+GFV +++ A ++ +G +DGR IRVN
Sbjct: 125 SGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 162
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo
sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEA 79
+ +A+ KLFIGGL+ +TNE +LK FG+HG I EV +I DR T +SRG+ F+ F + A
Sbjct: 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA 59
Query: 80 AAGEAIKEMDGLLLDGRNIRVNYAHK 105
A A K+M+G L G+ I+V A K
Sbjct: 60 DAKNAAKDMNGKSLHGKAIKVEQAKK 85
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 57/82 (69%)
Query: 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGE 83
+S ++++G LS+ ++ LK+ F + G +++ KV+ DR +G+SRG+GFV ++S +
Sbjct: 204 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVND 263
Query: 84 AIKEMDGLLLDGRNIRVNYAHK 105
AI ++G+ LDGR+IRV+ A +
Sbjct: 264 AIDSLNGVDLDGRSIRVSAAEE 285
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 4 LNGSVRFSHSVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRV 63
L V + RF+ L KLF+G L + + L F + G + V+VI D++
Sbjct: 71 LEDDVEVAEQPRFSEDL-------KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKL 123
Query: 64 TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101
TG+SRG+GFV +++ A ++ +G +DGR IRVN
Sbjct: 124 TGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 161
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,155,734
Number of Sequences: 539616
Number of extensions: 1338992
Number of successful extensions: 5116
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 172
Number of HSP's that attempted gapping in prelim test: 3378
Number of HSP's gapped (non-prelim): 1602
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)