Query 034017
Match_columns 106
No_of_seqs 101 out of 1612
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 14:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 1.1E-25 3.9E-30 125.7 11.9 81 25-105 18-98 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 8.6E-24 2.9E-28 120.1 12.5 82 24-105 4-85 (110)
3 3bs9_A Nucleolysin TIA-1 isofo 99.9 2.8E-23 9.5E-28 113.1 11.7 82 24-105 4-85 (87)
4 3mdf_A Peptidyl-prolyl CIS-tra 99.9 2.5E-23 8.7E-28 112.8 11.0 82 23-104 4-85 (85)
5 3md1_A Nuclear and cytoplasmic 99.9 5.2E-23 1.8E-27 111.1 12.0 79 27-105 2-80 (83)
6 2lxi_A RNA-binding protein 10; 99.9 2.5E-24 8.4E-29 118.6 6.5 80 26-105 1-82 (91)
7 2do4_A Squamous cell carcinoma 99.9 1.1E-22 3.9E-27 113.4 13.1 84 21-105 12-95 (100)
8 2cqc_A Arginine/serine-rich sp 99.9 8.8E-23 3E-27 112.8 12.4 85 21-105 10-94 (95)
9 2cpz_A CUG triplet repeat RNA- 99.9 9.6E-23 3.3E-27 116.4 12.3 85 21-105 20-104 (115)
10 2e5h_A Zinc finger CCHC-type a 99.9 9.6E-23 3.3E-27 112.5 11.7 84 21-104 11-94 (94)
11 1p27_B RNA-binding protein 8A; 99.9 7.3E-23 2.5E-27 115.3 11.4 84 22-105 19-102 (106)
12 2khc_A Testis-specific RNP-typ 99.9 4.6E-23 1.6E-27 118.1 10.6 84 21-104 35-118 (118)
13 2la6_A RNA-binding protein FUS 99.9 9E-23 3.1E-27 113.7 11.5 85 20-104 7-99 (99)
14 2dgo_A Cytotoxic granule-assoc 99.9 1.9E-22 6.3E-27 115.1 12.9 85 21-105 10-94 (115)
15 2cq0_A Eukaryotic translation 99.9 1.2E-22 4E-27 113.9 11.8 84 22-105 11-94 (103)
16 1whw_A Hypothetical protein ri 99.9 9.6E-23 3.3E-27 113.5 11.3 83 23-105 5-87 (99)
17 2lkz_A RNA-binding protein 5; 99.9 1.7E-23 5.9E-28 116.0 7.9 83 23-105 6-94 (95)
18 2kxn_B Transformer-2 protein h 99.9 3E-23 1E-27 120.8 9.0 86 20-105 40-125 (129)
19 2jrs_A RNA-binding protein 39; 99.9 1.1E-22 3.9E-27 115.1 11.1 86 20-105 20-105 (108)
20 1x5u_A Splicing factor 3B subu 99.9 8.7E-23 3E-27 114.8 10.6 85 21-105 10-94 (105)
21 2dnz_A Probable RNA-binding pr 99.9 1.3E-22 4.5E-27 112.1 10.8 82 24-105 3-84 (95)
22 2x1f_A MRNA 3'-END-processing 99.9 1.5E-22 5E-27 112.3 10.9 80 26-105 2-81 (96)
23 2dnm_A SRP46 splicing factor; 99.9 5.1E-23 1.7E-27 115.4 9.1 85 21-105 8-92 (103)
24 4f25_A Polyadenylate-binding p 99.9 2.1E-22 7.3E-27 115.1 11.5 79 25-105 4-82 (115)
25 2dgs_A DAZ-associated protein 99.9 2.2E-22 7.7E-27 112.0 11.3 83 22-105 6-88 (99)
26 3p5t_L Cleavage and polyadenyl 99.9 1.6E-23 5.4E-28 115.0 6.4 79 27-105 2-82 (90)
27 2div_A TRNA selenocysteine ass 99.9 1.3E-22 4.6E-27 112.9 10.2 84 23-106 6-94 (99)
28 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.2E-22 4.3E-27 113.6 9.7 84 22-105 8-91 (102)
29 3s7r_A Heterogeneous nuclear r 99.9 6.2E-22 2.1E-26 107.8 12.2 82 21-103 6-87 (87)
30 3ns6_A Eukaryotic translation 99.9 3.9E-23 1.3E-27 115.5 7.5 82 24-105 4-92 (100)
31 1oo0_B CG8781-PA, drosophila Y 99.9 2.5E-22 8.4E-27 113.8 10.8 85 21-105 21-105 (110)
32 1u6f_A Tcubp1, RNA-binding pro 99.9 4.4E-22 1.5E-26 116.9 12.2 86 20-105 36-121 (139)
33 2cph_A RNA binding motif prote 99.9 2.4E-22 8.2E-27 113.3 10.6 86 21-106 10-97 (107)
34 2ywk_A Putative RNA-binding pr 99.9 3.9E-22 1.3E-26 110.2 11.2 84 21-105 11-94 (95)
35 1x5s_A Cold-inducible RNA-bind 99.9 1.3E-22 4.6E-27 113.5 9.4 84 22-105 8-91 (102)
36 1x4h_A RNA-binding protein 28; 99.9 3.5E-22 1.2E-26 113.2 11.2 85 21-105 10-100 (111)
37 1x5t_A Splicing factor 3B subu 99.9 1.5E-22 5.3E-27 112.0 9.4 82 24-105 3-85 (96)
38 2cpf_A RNA binding motif prote 99.9 2.7E-22 9.2E-27 111.5 10.4 82 24-105 3-87 (98)
39 3n9u_C Cleavage and polyadenyl 99.9 2.9E-22 9.9E-27 120.0 11.2 81 25-105 54-136 (156)
40 3ulh_A THO complex subunit 4; 99.9 7.3E-22 2.5E-26 111.3 12.2 83 21-104 24-106 (107)
41 3ucg_A Polyadenylate-binding p 99.9 3.9E-22 1.3E-26 109.0 10.7 80 25-105 5-84 (89)
42 2d9p_A Polyadenylate-binding p 99.9 5.5E-22 1.9E-26 111.2 11.5 83 21-105 10-92 (103)
43 2dnh_A Bruno-like 5, RNA bindi 99.9 7.8E-22 2.7E-26 110.9 11.9 82 23-105 12-96 (105)
44 2cqd_A RNA-binding region cont 99.9 6E-22 2E-26 113.2 11.4 85 20-105 11-95 (116)
45 2dng_A Eukaryotic translation 99.9 1E-21 3.5E-26 110.1 12.0 83 21-105 10-92 (103)
46 4a8x_A RNA-binding protein wit 99.9 4E-22 1.4E-26 108.7 9.9 81 25-105 3-84 (88)
47 2fy1_A RNA-binding motif prote 99.9 4E-22 1.4E-26 114.1 10.0 82 23-105 4-85 (116)
48 2cq4_A RNA binding motif prote 99.9 1.7E-22 5.9E-27 115.2 8.2 80 25-105 24-103 (114)
49 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.9 1.2E-21 4.3E-26 114.9 12.0 84 20-103 57-140 (140)
50 2dgp_A Bruno-like 4, RNA bindi 99.9 3.2E-22 1.1E-26 112.6 9.0 85 21-105 8-95 (106)
51 2cqp_A RNA-binding protein 12; 99.9 4.6E-22 1.6E-26 110.5 9.3 84 22-105 11-94 (98)
52 2cpe_A RNA-binding protein EWS 99.9 6.2E-22 2.1E-26 112.6 10.1 84 22-105 11-102 (113)
53 1p1t_A Cleavage stimulation fa 99.9 4.3E-22 1.5E-26 111.7 9.3 81 25-105 7-87 (104)
54 1s79_A Lupus LA protein; RRM, 99.9 4E-22 1.4E-26 112.0 9.0 81 22-104 7-87 (103)
55 2do0_A HnRNP M, heterogeneous 99.9 2.7E-21 9.2E-26 110.1 12.6 83 22-105 11-93 (114)
56 2kt5_A RNA and export factor-b 99.9 2.3E-21 7.8E-26 112.0 12.4 83 22-105 31-113 (124)
57 2rs2_A Musashi-1, RNA-binding 99.9 8.8E-22 3E-26 111.6 10.3 88 17-105 16-103 (109)
58 2dgw_A Probable RNA-binding pr 99.9 3.1E-21 1.1E-25 105.9 12.1 81 22-105 6-86 (91)
59 2cq3_A RNA-binding protein 9; 99.9 3.2E-21 1.1E-25 108.0 12.4 84 20-105 9-92 (103)
60 2dgv_A HnRNP M, heterogeneous 99.9 1.3E-21 4.3E-26 107.6 10.5 81 23-105 5-85 (92)
61 2cqi_A Nucleolysin TIAR; RNA r 99.9 2.9E-21 9.8E-26 108.2 12.1 83 21-105 10-92 (103)
62 2j76_E EIF-4B, EIF4B, eukaryot 99.9 1.4E-22 4.7E-27 113.2 6.7 85 19-105 12-97 (100)
63 2dgx_A KIAA0430 protein; RRM d 99.9 1.3E-21 4.6E-26 108.4 10.6 80 23-105 6-89 (96)
64 1wi8_A EIF-4B, eukaryotic tran 99.9 1E-21 3.5E-26 110.3 10.2 82 22-105 11-93 (104)
65 2ek1_A RNA-binding protein 12; 99.9 3.8E-22 1.3E-26 110.2 8.4 82 24-105 13-94 (95)
66 2dhg_A TRNA selenocysteine ass 99.9 5.9E-22 2E-26 111.2 9.2 83 22-105 5-89 (104)
67 3ex7_B RNA-binding protein 8A; 99.9 6.9E-22 2.4E-26 114.4 9.8 85 21-105 17-101 (126)
68 1h2v_Z 20 kDa nuclear CAP bind 99.9 2.8E-21 9.6E-26 115.5 12.6 83 23-105 36-118 (156)
69 2err_A Ataxin-2-binding protei 99.9 6.6E-22 2.2E-26 112.1 9.3 87 17-105 20-106 (109)
70 2dh8_A DAZ-associated protein 99.9 7.7E-22 2.6E-26 110.9 9.4 84 21-105 11-94 (105)
71 1x4e_A RNA binding motif, sing 99.9 1.1E-22 3.9E-27 110.3 5.7 82 24-105 3-84 (85)
72 2cqg_A TDP-43, TAR DNA-binding 99.9 7.2E-21 2.4E-25 106.6 13.1 83 21-105 10-92 (103)
73 1x4a_A Splicing factor, argini 99.9 5.4E-21 1.8E-25 108.1 12.3 82 21-105 17-98 (109)
74 2kn4_A Immunoglobulin G-bindin 99.9 2.3E-21 7.8E-26 116.0 11.2 84 22-105 66-149 (158)
75 2lea_A Serine/arginine-rich sp 99.9 2.5E-22 8.7E-27 117.7 6.7 86 20-105 41-126 (135)
76 2db1_A Heterogeneous nuclear r 99.9 1.5E-21 5.3E-26 112.0 9.8 82 22-105 13-97 (118)
77 2mss_A Protein (musashi1); RNA 99.9 4.2E-22 1.4E-26 105.7 6.7 75 28-103 1-75 (75)
78 2jwn_A Embryonic polyadenylate 99.9 2.6E-21 8.7E-26 111.7 10.3 80 25-105 35-114 (124)
79 1rk8_A CG8781-PA, CG8781-PA pr 99.9 5.8E-21 2E-25 115.2 12.3 83 23-105 69-151 (165)
80 2dis_A Unnamed protein product 99.9 1.9E-21 6.5E-26 109.9 9.1 82 24-105 6-91 (109)
81 1x5o_A RNA binding motif, sing 99.9 9E-21 3.1E-25 107.9 12.0 84 21-105 20-111 (114)
82 2cpi_A CCR4-NOT transcription 99.9 3.7E-21 1.3E-25 109.2 10.3 83 23-105 12-100 (111)
83 2m2b_A RNA-binding protein 10; 99.9 2.5E-22 8.5E-27 117.1 5.5 84 21-105 18-107 (131)
84 1sjq_A Polypyrimidine tract-bi 99.9 1.5E-21 5.1E-26 109.7 8.2 77 23-105 13-91 (105)
85 2cpy_A RNA-binding protein 12; 99.9 2.6E-21 8.8E-26 110.4 9.0 82 22-105 11-93 (114)
86 1uaw_A Mouse-musashi-1; RNP-ty 99.9 6.2E-22 2.1E-26 105.5 6.0 76 27-103 1-76 (77)
87 1wel_A RNA-binding protein 12; 99.9 1E-21 3.6E-26 113.5 7.3 84 21-105 20-103 (124)
88 2ki2_A SS-DNA binding protein 99.9 3E-22 1E-26 109.7 4.6 78 27-105 2-79 (90)
89 1x4b_A Heterogeneous nuclear r 99.9 5.2E-21 1.8E-25 109.3 9.9 80 25-105 26-105 (116)
90 2hgl_A HNRPF protein, heteroge 99.9 2.9E-21 9.8E-26 113.3 9.0 83 21-105 39-124 (136)
91 1wg5_A Heterogeneous nuclear r 99.9 5.1E-21 1.7E-25 107.5 9.4 83 21-105 10-93 (104)
92 2nlw_A Eukaryotic translation 99.9 3.9E-21 1.3E-25 108.2 8.9 82 22-105 11-99 (105)
93 2a3j_A U1 small nuclear ribonu 99.9 6.1E-21 2.1E-25 110.7 9.6 80 23-105 26-109 (127)
94 3r27_A HnRNP L, heterogeneous 99.9 1.1E-20 3.8E-25 105.2 9.9 79 21-105 16-96 (100)
95 2jvo_A Nucleolar protein 3; nu 99.9 9.6E-21 3.3E-25 107.1 9.9 80 18-105 23-102 (108)
96 2xnq_A Nuclear polyadenylated 99.9 2.1E-20 7.1E-25 103.9 11.0 81 17-105 13-94 (97)
97 2fc9_A NCL protein; structure 99.9 1.4E-20 4.9E-25 105.0 10.4 80 22-105 11-90 (101)
98 3q2s_C Cleavage and polyadenyl 99.8 4.5E-21 1.5E-25 121.1 9.0 81 25-105 67-149 (229)
99 4f02_A Polyadenylate-binding p 99.8 2.3E-20 8E-25 116.4 12.2 82 24-105 13-94 (213)
100 2cq1_A PTB-like protein L; RRM 99.8 2.6E-20 8.9E-25 104.2 11.0 77 23-105 12-90 (101)
101 3md3_A Nuclear and cytoplasmic 99.8 3.8E-20 1.3E-24 110.6 12.4 84 22-105 83-166 (166)
102 1x4c_A Splicing factor, argini 99.8 2.8E-20 9.7E-25 105.1 11.2 77 22-105 11-92 (108)
103 2fc8_A NCL protein; structure 99.8 3.3E-20 1.1E-24 103.6 11.3 82 21-105 10-91 (102)
104 1why_A Hypothetical protein ri 99.8 2.1E-20 7.3E-25 103.6 10.4 79 22-106 13-93 (97)
105 3lqv_A PRE-mRNA branch site pr 99.8 1.5E-20 5E-25 107.2 9.8 81 22-105 4-84 (115)
106 1wez_A HnRNP H', FTP-3, hetero 99.8 1.1E-20 3.6E-25 106.0 9.0 81 22-105 11-91 (102)
107 2jvr_A Nucleolar protein 3; RN 99.8 9.2E-21 3.1E-25 107.7 8.8 81 21-105 23-104 (111)
108 1x4d_A Matrin 3; structural ge 99.8 7.9E-21 2.7E-25 106.4 8.3 76 24-105 13-91 (102)
109 2ytc_A PRE-mRNA-splicing facto 99.8 2.3E-20 8E-25 101.1 9.9 77 22-104 8-85 (85)
110 2dnq_A RNA-binding protein 4B; 99.8 2.4E-20 8.1E-25 102.2 9.9 76 22-105 4-79 (90)
111 2dnn_A RNA-binding protein 12; 99.8 1.2E-20 4.2E-25 106.9 8.9 79 24-105 14-92 (109)
112 1fxl_A Paraneoplastic encephal 99.8 5.3E-20 1.8E-24 110.1 12.2 80 26-105 2-81 (167)
113 1x4g_A Nucleolysin TIAR; struc 99.8 2.3E-20 7.8E-25 105.6 9.9 79 21-105 20-98 (109)
114 1nu4_A U1A RNA binding domain; 99.8 6.3E-21 2.2E-25 105.7 7.3 81 23-106 5-89 (97)
115 2ad9_A Polypyrimidine tract-bi 99.8 1.6E-20 5.4E-25 107.7 9.1 78 22-105 27-106 (119)
116 2dgt_A RNA-binding protein 30; 99.8 8.9E-20 3.1E-24 100.2 11.1 77 21-105 5-81 (92)
117 1b7f_A Protein (SXL-lethal pro 99.8 4.2E-20 1.4E-24 110.8 10.6 81 25-105 2-82 (168)
118 2la4_A Nuclear and cytoplasmic 99.8 1.1E-20 3.7E-25 105.5 7.5 79 21-105 22-100 (101)
119 1iqt_A AUF1, heterogeneous nuc 99.8 3.2E-21 1.1E-25 102.3 4.9 75 28-103 1-75 (75)
120 2lmi_A GRSF-1, G-rich sequence 99.8 3.2E-21 1.1E-25 108.9 5.2 83 21-105 6-91 (107)
121 2cpx_A Hypothetical protein FL 99.8 4.1E-21 1.4E-25 109.5 5.5 84 22-105 21-104 (115)
122 1fjc_A Nucleolin RBD2, protein 99.8 2.8E-20 9.7E-25 102.9 8.6 79 22-105 12-90 (96)
123 1fj7_A Nucleolin RBD1, protein 99.8 1.2E-21 4E-26 109.5 3.0 81 23-105 14-94 (101)
124 2wbr_A GW182, gawky, LD47780P; 99.8 5.5E-20 1.9E-24 99.7 9.4 74 25-104 6-79 (89)
125 2e5j_A Methenyltetrahydrofolat 99.8 3.2E-20 1.1E-24 103.0 8.8 79 22-105 15-93 (97)
126 2g4b_A Splicing factor U2AF 65 99.8 8.5E-20 2.9E-24 109.9 11.4 82 23-104 91-172 (172)
127 2krb_A Eukaryotic translation 99.8 1.1E-20 3.6E-25 101.7 6.4 72 27-100 2-80 (81)
128 2dnp_A RNA-binding protein 14; 99.8 8E-20 2.7E-24 100.0 10.0 76 22-105 5-80 (90)
129 2cpj_A Non-POU domain-containi 99.8 5.2E-20 1.8E-24 102.4 9.3 78 22-105 11-88 (99)
130 1wf1_A RNA-binding protein RAL 99.8 7.3E-20 2.5E-24 103.6 10.0 76 22-105 23-99 (110)
131 2cpd_A Apobec-1 stimulating pr 99.8 2.4E-19 8.2E-24 99.7 11.7 76 22-105 11-88 (99)
132 1wex_A Hypothetical protein (r 99.8 6.6E-20 2.2E-24 103.1 9.3 76 24-105 13-90 (104)
133 1whx_A Hypothetical protein ri 99.8 3.1E-20 1E-24 105.5 7.9 75 25-105 9-83 (111)
134 2f3j_A RNA and export factor b 99.8 4.5E-20 1.5E-24 112.5 9.2 81 24-105 86-166 (177)
135 2xs2_A Deleted in azoospermia- 99.8 2.1E-20 7E-25 104.5 7.0 78 24-104 7-84 (102)
136 2dgu_A Heterogeneous nuclear r 99.8 1.5E-19 5.2E-24 101.2 10.6 74 24-105 9-82 (103)
137 1wg1_A KIAA1579 protein, homol 99.8 1.1E-19 3.6E-24 99.2 9.2 75 25-106 4-78 (88)
138 2hvz_A Splicing factor, argini 99.8 2.3E-20 7.9E-25 104.2 6.6 74 27-105 1-74 (101)
139 2i2y_A Fusion protein consists 99.8 7.6E-20 2.6E-24 108.6 9.1 80 21-105 68-147 (150)
140 2yh0_A Splicing factor U2AF 65 99.8 2.1E-19 7.2E-24 110.3 11.4 83 24-106 112-194 (198)
141 2e44_A Insulin-like growth fac 99.8 8.4E-20 2.9E-24 101.0 8.6 81 22-106 11-92 (96)
142 2dha_A FLJ20171 protein; RRM d 99.8 4.6E-20 1.6E-24 106.5 7.7 81 23-105 20-104 (123)
143 2qfj_A FBP-interacting repress 99.8 2.7E-19 9.1E-24 111.1 11.6 82 24-105 123-204 (216)
144 1l3k_A Heterogeneous nuclear r 99.8 2.8E-19 9.5E-24 109.6 11.5 84 21-105 8-91 (196)
145 2lcw_A RNA-binding protein FUS 99.7 7.8E-22 2.7E-26 112.8 0.0 82 24-105 5-94 (116)
146 2cqh_A IGF-II mRNA-binding pro 99.8 6.9E-20 2.3E-24 100.8 7.6 76 23-105 5-82 (93)
147 1x4f_A Matrin 3; structural ge 99.8 8.6E-20 2.9E-24 103.7 8.1 77 23-105 22-101 (112)
148 2kvi_A Nuclear polyadenylated 99.8 8.8E-20 3E-24 101.0 7.9 75 23-105 7-82 (96)
149 2j8a_A Histone-lysine N-methyl 99.8 1.7E-19 5.8E-24 103.9 9.0 78 27-104 3-94 (136)
150 3egn_A RNA-binding protein 40; 99.8 2.1E-20 7.2E-25 110.3 5.4 84 21-105 40-129 (143)
151 1sjr_A Polypyrimidine tract-bi 99.8 3E-19 1E-23 107.2 10.1 81 21-105 41-123 (164)
152 2e5g_A U6 snRNA-specific termi 99.8 3.3E-19 1.1E-23 98.3 9.5 76 24-105 6-81 (94)
153 3pgw_S U1-70K; protein-RNA com 99.8 2.7E-19 9.3E-24 121.9 11.0 81 25-105 101-181 (437)
154 3md3_A Nuclear and cytoplasmic 99.8 3.3E-19 1.1E-23 106.5 10.1 78 27-105 1-78 (166)
155 2hgm_A HNRPF protein, heteroge 99.8 7.3E-20 2.5E-24 106.0 6.9 82 21-105 37-120 (126)
156 1b7f_A Protein (SXL-lethal pro 99.8 7.8E-19 2.7E-23 105.2 11.7 82 22-103 85-168 (168)
157 1l3k_A Heterogeneous nuclear r 99.8 1.1E-18 3.7E-23 107.0 12.4 81 24-105 102-182 (196)
158 4f02_A Polyadenylate-binding p 99.8 7.2E-19 2.4E-23 109.7 11.4 79 25-105 102-180 (213)
159 2hgn_A Heterogeneous nuclear r 99.8 2E-20 6.7E-25 110.1 3.9 82 21-105 41-122 (139)
160 3zzy_A Polypyrimidine tract-bi 99.8 9.7E-19 3.3E-23 101.5 10.9 80 21-105 23-105 (130)
161 2cjk_A Nuclear polyadenylated 99.8 1.5E-19 5.2E-24 108.3 7.3 80 25-105 86-165 (167)
162 3nmr_A Cugbp ELAV-like family 99.8 1.2E-18 4.2E-23 104.9 11.3 80 24-104 93-175 (175)
163 1fxl_A Paraneoplastic encephal 99.8 1.2E-18 4.2E-23 104.1 10.9 80 24-103 86-167 (167)
164 2qfj_A FBP-interacting repress 99.8 8.4E-19 2.9E-23 108.9 9.7 81 24-104 26-106 (216)
165 2e5i_A Heterogeneous nuclear r 99.8 3.3E-18 1.1E-22 98.8 11.4 76 24-105 23-101 (124)
166 1x5p_A Negative elongation fac 99.8 5.7E-18 2E-22 93.8 11.8 76 22-105 11-86 (97)
167 3beg_B Splicing factor, argini 99.8 5.5E-19 1.9E-23 100.9 7.3 74 24-104 14-92 (115)
168 3d2w_A TAR DNA-binding protein 99.8 1.5E-18 5E-23 95.0 8.5 75 22-105 7-83 (89)
169 2diu_A KIAA0430 protein; struc 99.8 1.8E-18 6.2E-23 94.7 8.5 70 26-105 9-83 (96)
170 2voo_A Lupus LA protein; RNA-b 99.8 4.9E-18 1.7E-22 104.7 11.4 77 26-104 109-185 (193)
171 3tyt_A Heterogeneous nuclear r 99.8 2.7E-18 9.3E-23 106.8 10.2 75 25-104 3-78 (205)
172 3smz_A Protein raver-1, ribonu 99.8 5.8E-18 2E-22 109.2 12.1 83 22-105 180-263 (284)
173 3nmr_A Cugbp ELAV-like family 99.8 3.8E-18 1.3E-22 102.7 10.0 80 25-104 2-86 (175)
174 2cq2_A Hypothetical protein LO 99.8 2E-18 7E-23 98.2 8.0 76 23-104 22-104 (114)
175 3pgw_A U1-A; protein-RNA compl 99.8 6.6E-18 2.3E-22 108.9 11.2 81 22-105 5-89 (282)
176 2hzc_A Splicing factor U2AF 65 99.8 3.5E-18 1.2E-22 92.7 8.5 72 24-102 4-86 (87)
177 2dnl_A Cytoplasmic polyadenyla 99.8 3.2E-18 1.1E-22 97.5 8.5 64 24-88 6-72 (114)
178 1fje_B Nucleolin RBD12, protei 99.8 4.6E-18 1.6E-22 102.7 9.6 77 24-105 97-173 (175)
179 3smz_A Protein raver-1, ribonu 99.8 2.2E-17 7.5E-22 106.5 12.5 82 24-105 93-174 (284)
180 2cjk_A Nuclear polyadenylated 99.8 3.2E-18 1.1E-22 102.5 8.0 79 25-105 2-80 (167)
181 2pe8_A Splicing factor 45; RRM 99.8 2E-17 7E-22 93.0 10.3 82 24-105 6-93 (105)
182 2bz2_A Negative elongation fac 99.8 7.8E-18 2.7E-22 96.9 8.7 77 21-105 34-110 (121)
183 2ghp_A U4/U6 snRNA-associated 99.7 1.1E-17 3.6E-22 108.4 10.0 83 22-105 206-290 (292)
184 1wf0_A TDP-43, TAR DNA-binding 99.7 3.9E-18 1.3E-22 92.9 6.4 74 25-105 4-77 (88)
185 2adc_A Polypyrimidine tract-bi 99.7 1.3E-17 4.3E-22 105.0 9.4 80 21-105 29-109 (229)
186 3u1l_A PRE-mRNA-splicing facto 99.7 8.4E-18 2.9E-22 106.5 8.4 78 23-106 131-229 (240)
187 3pgw_A U1-A; protein-RNA compl 99.7 3.7E-17 1.3E-21 105.3 11.5 77 24-105 205-282 (282)
188 1qm9_A Polypyrimidine tract-bi 99.7 1.4E-17 4.7E-22 102.4 6.7 75 26-105 3-78 (198)
189 1fje_B Nucleolin RBD12, protei 99.7 4.5E-18 1.5E-22 102.7 3.6 83 21-105 8-90 (175)
190 3sde_A Paraspeckle component 1 99.7 1.3E-16 4.5E-21 102.1 10.0 78 22-105 18-95 (261)
191 2adc_A Polypyrimidine tract-bi 99.7 3.7E-16 1.3E-20 98.3 10.8 76 25-105 150-227 (229)
192 2ghp_A U4/U6 snRNA-associated 99.7 1.4E-16 4.8E-21 103.1 9.0 80 25-105 116-196 (292)
193 1qm9_A Polypyrimidine tract-bi 99.7 1.6E-16 5.6E-21 97.6 8.5 76 25-105 119-196 (198)
194 2dit_A HIV TAT specific factor 99.7 7.3E-16 2.5E-20 87.4 10.4 80 22-105 11-101 (112)
195 3sde_A Paraspeckle component 1 99.7 6.5E-16 2.2E-20 98.9 10.6 80 25-105 95-178 (261)
196 1jmt_A Splicing factor U2AF 35 99.7 6.6E-17 2.3E-21 90.8 4.7 72 31-103 20-103 (104)
197 3tyt_A Heterogeneous nuclear r 99.7 2.7E-16 9.1E-21 97.8 7.8 77 25-103 122-204 (205)
198 2g4b_A Splicing factor U2AF 65 99.7 9E-16 3.1E-20 92.2 8.9 74 25-105 3-87 (172)
199 3v4m_A Splicing factor U2AF 65 99.6 7.6E-16 2.6E-20 86.6 7.6 81 25-105 4-96 (105)
200 2yh0_A Splicing factor U2AF 65 99.6 1.2E-15 4.3E-20 93.4 8.9 74 25-105 3-87 (198)
201 3ue2_A Poly(U)-binding-splicin 99.6 4.9E-15 1.7E-19 84.8 9.2 80 25-104 19-107 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.6 9.7E-14 3.3E-18 77.2 10.1 73 26-105 10-89 (100)
203 3tht_A Alkylated DNA repair pr 99.5 3E-14 1E-18 94.4 8.6 77 22-104 14-97 (345)
204 3s6e_A RNA-binding protein 39; 99.5 2.7E-13 9.4E-18 77.1 9.3 77 24-104 5-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 2.4E-12 8.2E-17 69.8 8.2 72 26-106 7-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.4 3.7E-12 1.3E-16 72.9 7.9 78 21-104 13-94 (121)
207 3dxb_A Thioredoxin N-terminall 99.2 4.5E-11 1.5E-15 74.7 7.6 66 39-104 142-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.1 1.9E-10 6.3E-15 62.7 5.0 71 26-105 15-94 (95)
209 2l9w_A U4/U6 snRNA-associated- 99.0 3.8E-09 1.3E-13 58.9 9.1 73 23-101 18-95 (117)
210 1whv_A Poly(A)-specific ribonu 98.4 3.2E-06 1.1E-10 46.2 7.5 58 22-88 12-69 (100)
211 2dhx_A Poly (ADP-ribose) polym 98.2 4.3E-05 1.5E-09 42.1 9.6 70 24-102 6-80 (104)
212 1uw4_A UPF3X; nonsense mediate 98.2 1.4E-05 4.8E-10 43.3 7.6 67 27-93 2-70 (91)
213 1wey_A Calcipressin 1; structu 98.1 1.6E-05 5.4E-10 44.0 7.0 74 25-104 4-82 (104)
214 3ctr_A Poly(A)-specific ribonu 98.1 6.3E-06 2.2E-10 45.1 5.0 55 26-89 6-60 (101)
215 1wwh_A Nucleoporin 35, nucleop 97.9 0.0001 3.5E-09 41.7 8.0 72 23-102 21-93 (119)
216 2l08_A Regulator of nonsense t 97.9 8.2E-05 2.8E-09 40.6 6.5 78 26-103 9-93 (97)
217 3p3d_A Nucleoporin 53; structu 97.4 0.00066 2.3E-08 39.0 5.8 78 25-104 6-97 (132)
218 3pq1_A Poly(A) RNA polymerase; 97.0 0.00059 2E-08 47.0 3.6 57 25-87 52-108 (464)
219 2i2y_A Fusion protein consists 96.7 0.00078 2.7E-08 39.2 1.9 41 64-105 9-50 (150)
220 2kn4_A Immunoglobulin G-bindin 96.3 0.0061 2.1E-07 35.5 4.1 33 56-90 3-35 (158)
221 3d45_A Poly(A)-specific ribonu 95.8 0.063 2.2E-06 37.5 8.0 56 25-89 439-494 (507)
222 2g0c_A ATP-dependent RNA helic 65.6 11 0.00037 18.7 5.4 68 28-104 2-75 (76)
223 3lpe_A Putative transcription 37.8 38 0.0013 17.7 3.0 26 67-92 49-74 (92)
224 4bby_A Alkyldihydroxyacetoneph 34.1 86 0.0029 22.6 5.1 55 33-88 350-408 (658)
225 3h7h_B Transcription elongatio 33.6 32 0.0011 18.7 2.3 25 67-91 50-74 (106)
226 1fme_A FSD-EY peptide; beta-BE 31.0 26 0.0009 13.7 1.2 12 39-50 14-25 (28)
227 3uzu_A Ribosomal RNA small sub 30.6 36 0.0012 21.7 2.5 34 27-60 115-148 (279)
228 4eyt_A Telomerase associated p 29.5 69 0.0024 17.0 9.7 56 25-88 11-66 (129)
229 3fut_A Dimethyladenosine trans 29.4 64 0.0022 20.4 3.5 32 26-58 110-141 (271)
230 2g1d_A 30S ribosomal protein S 29.0 41 0.0014 18.1 2.2 47 36-83 29-80 (98)
231 2exu_A Transcription initiatio 27.3 60 0.002 19.8 2.9 27 67-93 148-174 (200)
232 1xn9_A 30S ribosomal protein S 27.1 80 0.0027 17.0 5.7 49 36-85 28-81 (101)
233 3fjv_A Uncharacterized novel p 27.0 1.1E+02 0.0038 18.6 4.5 55 39-100 66-127 (194)
234 4e8u_A Putative uncharacterize 26.3 1.1E+02 0.0037 18.3 7.9 56 28-86 14-81 (172)
235 1ywx_A 30S ribosomal protein S 25.8 86 0.0029 16.9 5.6 47 36-83 28-79 (102)
236 2rf4_B DNA-directed RNA polyme 25.1 63 0.0021 17.0 2.3 29 22-50 15-43 (87)
237 3ts2_A Protein LIN-28 homolog 24.4 14 0.00049 21.3 -0.2 9 68-76 21-29 (148)
238 2lfv_A Protein DAMX; cell divi 29.9 16 0.00056 19.9 0.0 67 22-92 21-88 (106)
239 2v94_A RPS24, 30S ribosomal pr 23.8 98 0.0033 16.9 5.7 48 36-84 37-89 (107)
240 1qyr_A KSGA, high level kasuga 22.8 1.1E+02 0.0038 19.0 3.7 24 27-50 91-114 (252)
241 3p8b_B Transcription antitermi 22.2 1E+02 0.0036 17.5 3.2 26 67-92 42-67 (152)
242 3tqs_A Ribosomal RNA small sub 22.2 39 0.0013 21.2 1.5 31 29-59 99-129 (255)
243 3ftd_A Dimethyladenosine trans 20.8 92 0.0031 19.3 3.0 25 27-51 96-120 (249)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=125.71 Aligned_cols=81 Identities=35% Similarity=0.619 Sum_probs=78.2
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|++|++.|++..+.|++|+|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 46789999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred c
Q 034017 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 7
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.92 E-value=8.6e-24 Score=120.12 Aligned_cols=82 Identities=26% Similarity=0.284 Sum_probs=78.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||+++++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cc
Q 034017 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 64
No 3
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.91 E-value=2.8e-23 Score=113.14 Aligned_cols=82 Identities=39% Similarity=0.683 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cc
Q 034017 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
++
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 75
No 4
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.91 E-value=2.5e-23 Score=112.84 Aligned_cols=82 Identities=37% Similarity=0.613 Sum_probs=77.9
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034017 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
....++|||+|||.++++++|+++|++||.|..+.++.++.++..+|+|||+|.+.++|++|++.|++..+.|++|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cc
Q 034017 103 AH 104 (106)
Q Consensus 103 a~ 104 (106)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 5
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.91 E-value=5.2e-23 Score=111.14 Aligned_cols=79 Identities=39% Similarity=0.698 Sum_probs=76.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 034017 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~~ 105 (106)
.+|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..|++..++|++|+|+++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 5899999999999999999999999999999999988999999999999999999999999999999999999999975
No 6
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.91 E-value=2.5e-24 Score=118.59 Aligned_cols=80 Identities=23% Similarity=0.447 Sum_probs=74.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccC-CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHh-CCeeeCCeEEEEEec
Q 034017 26 RTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM-DGLLLDGRNIRVNYA 103 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l-~~~~~~~~~l~v~~a 103 (106)
+++|||+|||+++++++|+++|+.|| .|..+.+++++.++.++|||||+|.+.++|++|++.+ ++..++|++|+|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 7999999999889999999999999999999999877 456799999999998
Q ss_pred cc
Q 034017 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
++
T Consensus 81 ~~ 82 (91)
T 2lxi_A 81 DP 82 (91)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 7
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=113.42 Aligned_cols=84 Identities=26% Similarity=0.603 Sum_probs=79.0
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..+. ++..+|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 445567899999999999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.++++
T Consensus 91 ~~a~~ 95 (100)
T 2do4_A 91 AISNS 95 (100)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99875
No 8
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=8.8e-23 Score=112.77 Aligned_cols=85 Identities=34% Similarity=0.529 Sum_probs=80.0
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
..+...++|||+|||..+++++|+++|+.||.|..+.+..++.++..+|+|||+|.+.++|++|+..|++..+.|++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44556789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
++++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99875
No 9
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.90 E-value=9.6e-23 Score=116.35 Aligned_cols=85 Identities=25% Similarity=0.455 Sum_probs=79.6
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34446789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
+++++
T Consensus 100 ~~a~~ 104 (115)
T 2cpz_A 100 QLKRS 104 (115)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99865
No 10
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=9.6e-23 Score=112.49 Aligned_cols=84 Identities=23% Similarity=0.432 Sum_probs=78.7
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|++.|++..+.|++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34456789999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred Eecc
Q 034017 101 NYAH 104 (106)
Q Consensus 101 ~~a~ 104 (106)
++|+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 11
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=7.3e-23 Score=115.25 Aligned_cols=84 Identities=27% Similarity=0.461 Sum_probs=79.0
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 33457899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++.+
T Consensus 99 ~a~~ 102 (106)
T 1p27_B 99 WCFV 102 (106)
T ss_dssp ESEE
T ss_pred eecC
Confidence 9865
No 12
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.90 E-value=4.6e-23 Score=118.13 Aligned_cols=84 Identities=30% Similarity=0.479 Sum_probs=78.1
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|++.|++..++|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred Eecc
Q 034017 101 NYAH 104 (106)
Q Consensus 101 ~~a~ 104 (106)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9975
No 13
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.90 E-value=9e-23 Score=113.70 Aligned_cols=85 Identities=28% Similarity=0.435 Sum_probs=79.4
Q ss_pred ccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeE--------EEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCe
Q 034017 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--------VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL 91 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~ 91 (106)
..++...++|||+|||.++++++|+++|+.||.|.. +.+..++.++..+|||||+|.+.++|++|++.|++.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345566889999999999999999999999999999 999999888999999999999999999999999999
Q ss_pred eeCCeEEEEEecc
Q 034017 92 LLDGRNIRVNYAH 104 (106)
Q Consensus 92 ~~~~~~l~v~~a~ 104 (106)
.+.|++|+|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999984
No 14
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.90 E-value=1.9e-22 Score=115.13 Aligned_cols=85 Identities=39% Similarity=0.676 Sum_probs=80.0
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||..+++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44557889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.++.+
T Consensus 90 ~~a~~ 94 (115)
T 2dgo_A 90 NWATR 94 (115)
T ss_dssp EESSC
T ss_pred EEccC
Confidence 99865
No 15
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=1.2e-22 Score=113.92 Aligned_cols=84 Identities=31% Similarity=0.489 Sum_probs=79.6
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44567999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++.+
T Consensus 91 ~a~~ 94 (103)
T 2cq0_A 91 WAKP 94 (103)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9875
No 16
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.90 E-value=9.6e-23 Score=113.50 Aligned_cols=83 Identities=29% Similarity=0.479 Sum_probs=78.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034017 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
....++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccc
Q 034017 103 AHK 105 (106)
Q Consensus 103 a~~ 105 (106)
+.+
T Consensus 85 a~~ 87 (99)
T 1whw_A 85 STI 87 (99)
T ss_dssp CCC
T ss_pred cCC
Confidence 865
No 17
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=116.02 Aligned_cols=83 Identities=22% Similarity=0.430 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCC--eeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCe----eeCCe
Q 034017 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGE--IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL----LLDGR 96 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~----~~~~~ 96 (106)
...-.+|||+|||+++++++|+++|++||. +..+.+++++.++.++|||||+|.+.++|++|++.|++. .++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345678999999999999999999999995 678999999989999999999999999999999999986 58999
Q ss_pred EEEEEeccc
Q 034017 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~l~v~~a~~ 105 (106)
+|.|+||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999874
No 18
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.90 E-value=3e-23 Score=120.84 Aligned_cols=86 Identities=34% Similarity=0.550 Sum_probs=80.6
Q ss_pred ccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 034017 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
...+...++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|++|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44556688999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeccc
Q 034017 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|+++.+
T Consensus 120 V~~a~~ 125 (129)
T 2kxn_B 120 VDFSIT 125 (129)
T ss_dssp ESCCSS
T ss_pred EEEecC
Confidence 999865
No 19
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=115.10 Aligned_cols=86 Identities=28% Similarity=0.646 Sum_probs=80.4
Q ss_pred ccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 034017 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
.......++|||+|||..+++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|++.+++..+.|++|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34455678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeccc
Q 034017 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|+++++
T Consensus 100 V~~a~~ 105 (108)
T 2jrs_A 100 VGHVTE 105 (108)
T ss_dssp EECSCS
T ss_pred EEEccc
Confidence 999865
No 20
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=8.7e-23 Score=114.76 Aligned_cols=85 Identities=44% Similarity=0.647 Sum_probs=80.0
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||..+++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 44556889999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.++.+
T Consensus 90 ~~a~~ 94 (105)
T 1x5u_A 90 NKASA 94 (105)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 99865
No 21
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=112.14 Aligned_cols=82 Identities=30% Similarity=0.662 Sum_probs=77.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred cc
Q 034017 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 22
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.89 E-value=1.5e-22 Score=112.26 Aligned_cols=80 Identities=26% Similarity=0.623 Sum_probs=76.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 034017 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~~ 105 (106)
.++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..++|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57899999999999999999999999999999999988899999999999999999999999999999999999999875
No 23
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=5.1e-23 Score=115.42 Aligned_cols=85 Identities=32% Similarity=0.509 Sum_probs=79.8
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 44556799999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
+++++
T Consensus 88 ~~a~~ 92 (103)
T 2dnm_A 88 QVARY 92 (103)
T ss_dssp EECSS
T ss_pred EECCc
Confidence 99874
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=2.1e-22 Score=115.08 Aligned_cols=79 Identities=37% Similarity=0.698 Sum_probs=72.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
...+|||+|||+++++++|+++|+.||.|..+.++.+. +.++|||||+|.+.++|++|++.|++..+.|++|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999885 4478999999999999999999999999999999999975
Q ss_pred c
Q 034017 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 82 ~ 82 (115)
T 4f25_A 82 S 82 (115)
T ss_dssp C
T ss_pred C
Confidence 4
No 25
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=2.2e-22 Score=112.04 Aligned_cols=83 Identities=29% Similarity=0.560 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|+. +++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999 99999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++.+
T Consensus 85 ~a~~ 88 (99)
T 2dgs_A 85 RAEP 88 (99)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9865
No 26
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.89 E-value=1.6e-23 Score=115.02 Aligned_cols=79 Identities=32% Similarity=0.502 Sum_probs=72.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccC--CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 27 TKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
.+|||+|||+++++++|+++|+.|| .|..+.++.++.+|.++|||||+|.+.++|++|++.|++..+.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999998899999999999999999999999999999999999999986
Q ss_pred c
Q 034017 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 5
No 27
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=112.89 Aligned_cols=84 Identities=33% Similarity=0.591 Sum_probs=79.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCee-EEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeE----
Q 034017 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEII-EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN---- 97 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~---- 97 (106)
....++|||+|||.++++++|+++|+.||.|. .+.+..++.++..+|||||+|.+.++|++|+..|++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44678999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred EEEEecccC
Q 034017 98 IRVNYAHKD 106 (106)
Q Consensus 98 l~v~~a~~~ 106 (106)
|+|.||++.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998753
No 28
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.2e-22 Score=113.59 Aligned_cols=84 Identities=36% Similarity=0.585 Sum_probs=79.0
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|+..|++..+.|++|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++++
T Consensus 88 ~a~~ 91 (102)
T 2cqb_A 88 LAKP 91 (102)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 9865
No 29
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.89 E-value=6.2e-22 Score=107.82 Aligned_cols=82 Identities=37% Similarity=0.650 Sum_probs=75.9
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
..+...++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|++ +++..+.|++|+|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 445678899999999999999999999999999999999998889999999999999999999997 5888999999999
Q ss_pred Eec
Q 034017 101 NYA 103 (106)
Q Consensus 101 ~~a 103 (106)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 30
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.89 E-value=3.9e-23 Score=115.54 Aligned_cols=82 Identities=22% Similarity=0.367 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCC------CCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCC-e
Q 034017 24 NSRTKLFIGGLSY------DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG-R 96 (106)
Q Consensus 24 ~~~~~l~v~~lp~------~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~-~ 96 (106)
...++|||+|||. ++++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|++|++.|++..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467899999999 99999999999999999999999999889999999999999999999999999999999 9
Q ss_pred EEEEEeccc
Q 034017 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~l~v~~a~~ 105 (106)
.|+|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999854
No 31
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.89 E-value=2.5e-22 Score=113.80 Aligned_cols=85 Identities=25% Similarity=0.440 Sum_probs=79.3
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||..+++++|+++|+.||.|..+.+..+..++..+|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.++.+
T Consensus 101 ~~a~~ 105 (110)
T 1oo0_B 101 DWCFV 105 (110)
T ss_dssp EESEE
T ss_pred EEccc
Confidence 99864
No 32
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.89 E-value=4.4e-22 Score=116.92 Aligned_cols=86 Identities=34% Similarity=0.580 Sum_probs=80.3
Q ss_pred ccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 034017 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
...+...++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|++|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34455678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeccc
Q 034017 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|.++++
T Consensus 116 v~~a~~ 121 (139)
T 1u6f_A 116 VALAAS 121 (139)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 999865
No 33
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=2.4e-22 Score=113.26 Aligned_cols=86 Identities=23% Similarity=0.529 Sum_probs=79.6
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeec-CCCCCeeeEEEEEecCHHHHHHHHHHh-CCeeeCCeEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICD-RVTGQSRGYGFVKFASEAAAGEAIKEM-DGLLLDGRNI 98 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~g~~fv~f~~~~~a~~al~~l-~~~~~~~~~l 98 (106)
......++|||+|||..+++++|+++|+.||.|..+.+..+ ..++..+|||||+|.+.++|++|+..| ++..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34456789999999999999999999999999999999988 678889999999999999999999999 9999999999
Q ss_pred EEEecccC
Q 034017 99 RVNYAHKD 106 (106)
Q Consensus 99 ~v~~a~~~ 106 (106)
+|+++.++
T Consensus 90 ~v~~a~~~ 97 (107)
T 2cph_A 90 VLEWADSE 97 (107)
T ss_dssp EEEECCCC
T ss_pred EEEeCCCC
Confidence 99998753
No 34
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.89 E-value=3.9e-22 Score=110.20 Aligned_cols=84 Identities=29% Similarity=0.509 Sum_probs=77.7
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||+.+++++|+++|+.||.|..+.+..++ ++..+|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 344567899999999999999999999999999999999987 4889999999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
++++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99864
No 35
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.3e-22 Score=113.45 Aligned_cols=84 Identities=49% Similarity=0.756 Sum_probs=79.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|++|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++++
T Consensus 88 ~a~~ 91 (102)
T 1x5s_A 88 QAGK 91 (102)
T ss_dssp EEEC
T ss_pred ECCC
Confidence 9865
No 36
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=3.5e-22 Score=113.24 Aligned_cols=85 Identities=33% Similarity=0.575 Sum_probs=79.4
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhC------CeeeC
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD------GLLLD 94 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~------~~~~~ 94 (106)
......++|||+|||+++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..++ +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 344567899999999999999999999999999999999998889999999999999999999999999 99999
Q ss_pred CeEEEEEeccc
Q 034017 95 GRNIRVNYAHK 105 (106)
Q Consensus 95 ~~~l~v~~a~~ 105 (106)
|+.|+|.++.+
T Consensus 90 g~~l~v~~a~~ 100 (111)
T 1x4h_A 90 GRQLKVDLAVT 100 (111)
T ss_dssp SCEEEEECCCC
T ss_pred CEEEEEEECCC
Confidence 99999999865
No 37
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.5e-22 Score=112.03 Aligned_cols=82 Identities=40% Similarity=0.673 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEE-EEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
...++|||+|||.++++++|+++|+.||.|..+ .+..++.++..+|||||+|.+.++|++|+..|++..+.|++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 9999877899999999999999999999999999999999999999
Q ss_pred ccc
Q 034017 103 AHK 105 (106)
Q Consensus 103 a~~ 105 (106)
+.+
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 865
No 38
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=2.7e-22 Score=111.49 Aligned_cols=82 Identities=28% Similarity=0.524 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCC---CCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRV---TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..+.. ++..+|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568899999999999999999999999999999988875 4578999999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
+++++
T Consensus 83 ~~a~~ 87 (98)
T 2cpf_A 83 RISER 87 (98)
T ss_dssp ECSSC
T ss_pred EEccC
Confidence 99865
No 39
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.89 E-value=2.9e-22 Score=120.05 Aligned_cols=81 Identities=28% Similarity=0.512 Sum_probs=76.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccC--CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
..++|||+|||+++++++|+++|+.|| .|..+.++.++.+|.++|||||+|.+.++|++|+..|++..++|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999988999999999999999999999999999999999999999
Q ss_pred ccc
Q 034017 103 AHK 105 (106)
Q Consensus 103 a~~ 105 (106)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 40
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.89 E-value=7.3e-22 Score=111.30 Aligned_cols=83 Identities=27% Similarity=0.506 Sum_probs=78.4
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||..+++++|+++|+.||.|..+.+..+. ++..+|+|||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 445568999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred Eecc
Q 034017 101 NYAH 104 (106)
Q Consensus 101 ~~a~ 104 (106)
++|.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 41
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.89 E-value=3.9e-22 Score=108.98 Aligned_cols=80 Identities=21% Similarity=0.605 Sum_probs=76.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|++|+ .+++..+.|++|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3578999999999999999999999999999999999888999999999999999999999 899999999999999987
Q ss_pred c
Q 034017 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 42
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=5.5e-22 Score=111.17 Aligned_cols=83 Identities=29% Similarity=0.539 Sum_probs=77.6
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||+++++++|+++|+.||.|..+.+..+ ++..+|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 44557889999999999999999999999999999999887 7889999999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.++.+
T Consensus 88 ~~a~~ 92 (103)
T 2d9p_A 88 ALAQR 92 (103)
T ss_dssp EECSS
T ss_pred EEecc
Confidence 99865
No 43
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.88 E-value=7.8e-22 Score=110.85 Aligned_cols=82 Identities=30% Similarity=0.436 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCC---eEEE
Q 034017 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG---RNIR 99 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~---~~l~ 99 (106)
....++|||+|||.++++++|+++|+.||.|..+.+..++ ++..+|||||+|.+.++|++|+..|++..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999988 78899999999999999999999999999988 9999
Q ss_pred EEeccc
Q 034017 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|.++++
T Consensus 91 V~~a~~ 96 (105)
T 2dnh_A 91 VKFADT 96 (105)
T ss_dssp EEESCS
T ss_pred EEECcc
Confidence 999875
No 44
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=6e-22 Score=113.20 Aligned_cols=85 Identities=45% Similarity=0.697 Sum_probs=78.6
Q ss_pred ccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 034017 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..+++ .+.|++|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34455689999999999999999999999999999999999988899999999999999999999999998 89999999
Q ss_pred EEeccc
Q 034017 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|+++.+
T Consensus 90 V~~a~~ 95 (116)
T 2cqd_A 90 VNLAYL 95 (116)
T ss_dssp EEESTT
T ss_pred EEEccc
Confidence 999854
No 45
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=1e-21 Score=110.11 Aligned_cols=83 Identities=25% Similarity=0.467 Sum_probs=77.3
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
.+....++|||+|||.++++++|+++|+.|| |..+.++.++.++..+|||||+|.+.++|++|+ .|++..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3445678999999999999999999999997 999999999888999999999999999999999 79999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.++.+
T Consensus 88 ~~a~~ 92 (103)
T 2dng_A 88 DIAEG 92 (103)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99865
No 46
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.88 E-value=4e-22 Score=108.66 Aligned_cols=81 Identities=28% Similarity=0.508 Sum_probs=75.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCC-eeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ-SRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
..++|||+|||.++++++|+++|+.||.|..+.+..+..++. .+|+|||+|.+.++|++|+..|++..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467899999999999999999999999999999988876655 8899999999999999999999999999999999998
Q ss_pred cc
Q 034017 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 47
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.88 E-value=4e-22 Score=114.12 Aligned_cols=82 Identities=50% Similarity=0.795 Sum_probs=77.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034017 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
....++|||+|||.++++++|+++|+.||.|..+.+..+. ++..+|||||+|.+.++|++|++.|++..+.|+.|+|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred ccc
Q 034017 103 AHK 105 (106)
Q Consensus 103 a~~ 105 (106)
+++
T Consensus 83 a~~ 85 (116)
T 2fy1_A 83 AKK 85 (116)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 48
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.7e-22 Score=115.15 Aligned_cols=80 Identities=26% Similarity=0.381 Sum_probs=76.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|+ .|++..+.|+.|+|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 4589999999999999999999999999999999999888999999999999999999999 899999999999999986
Q ss_pred c
Q 034017 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 49
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.88 E-value=1.2e-21 Score=114.90 Aligned_cols=84 Identities=36% Similarity=0.583 Sum_probs=77.9
Q ss_pred ccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 034017 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
.......++|||+|||..+++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|++.|++..+.|++|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34455689999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEec
Q 034017 100 VNYA 103 (106)
Q Consensus 100 v~~a 103 (106)
|++|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 50
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.88 E-value=3.2e-22 Score=112.59 Aligned_cols=85 Identities=29% Similarity=0.441 Sum_probs=79.0
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeee---CCeE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL---DGRN 97 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~---~~~~ 97 (106)
..+...++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|+..|++..+ .|++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3455678999999999999999999999999999999999988899999999999999999999999999987 8899
Q ss_pred EEEEeccc
Q 034017 98 IRVNYAHK 105 (106)
Q Consensus 98 l~v~~a~~ 105 (106)
|+|.++.+
T Consensus 88 l~v~~a~~ 95 (106)
T 2dgp_A 88 IQVKPADS 95 (106)
T ss_dssp CEEEECCC
T ss_pred EEEEECCc
Confidence 99999865
No 51
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=4.6e-22 Score=110.53 Aligned_cols=84 Identities=14% Similarity=0.178 Sum_probs=77.5
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|++.|++..+.|++|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34457899999999999999999999999999888888888789999999999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++..
T Consensus 91 ~a~~ 94 (98)
T 2cqp_A 91 LGSG 94 (98)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 9864
No 52
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=6.2e-22 Score=112.63 Aligned_cols=84 Identities=24% Similarity=0.430 Sum_probs=78.6
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCee--------EEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeee
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEII--------EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 93 (106)
.....++|||+|||.++++++|+++|+.||.|. .+.+..++.++..+|||||+|.+.++|++|+..|++..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 445678999999999999999999999999998 699999887899999999999999999999999999999
Q ss_pred CCeEEEEEeccc
Q 034017 94 DGRNIRVNYAHK 105 (106)
Q Consensus 94 ~~~~l~v~~a~~ 105 (106)
.|++|+|+++++
T Consensus 91 ~g~~l~V~~a~~ 102 (113)
T 2cpe_A 91 QGSKLKVSLARK 102 (113)
T ss_dssp TTEECEEECSSC
T ss_pred CCCEEEEEECCC
Confidence 999999999865
No 53
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=4.3e-22 Score=111.68 Aligned_cols=81 Identities=32% Similarity=0.707 Sum_probs=77.3
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
..++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45789999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred c
Q 034017 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 87 ~ 87 (104)
T 1p1t_A 87 S 87 (104)
T ss_dssp C
T ss_pred C
Confidence 5
No 54
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=4e-22 Score=112.03 Aligned_cols=81 Identities=15% Similarity=0.272 Sum_probs=75.4
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||+++++++|+++|+.||.|..+.++.++. +.++|||||+|.+.++|++|+. +++..+.|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 445578999999999999999999999999999999999885 8899999999999999999999 89999999999999
Q ss_pred ecc
Q 034017 102 YAH 104 (106)
Q Consensus 102 ~a~ 104 (106)
++.
T Consensus 85 ~~~ 87 (103)
T 1s79_A 85 FKD 87 (103)
T ss_dssp EHH
T ss_pred Ech
Confidence 864
No 55
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=2.7e-21 Score=110.08 Aligned_cols=83 Identities=28% Similarity=0.498 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..++ ++..+|||||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34457899999999999999999999999999999999987 68899999999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++++
T Consensus 90 ~a~~ 93 (114)
T 2do0_A 90 MDER 93 (114)
T ss_dssp ECSC
T ss_pred Eccc
Confidence 9863
No 56
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.88 E-value=2.3e-21 Score=111.97 Aligned_cols=83 Identities=27% Similarity=0.488 Sum_probs=78.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|..+.+..+. ++..+|||||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
+|.+
T Consensus 110 ~a~~ 113 (124)
T 2kt5_A 110 LVAS 113 (124)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9865
No 57
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.88 E-value=8.8e-22 Score=111.56 Aligned_cols=88 Identities=36% Similarity=0.567 Sum_probs=74.1
Q ss_pred cccccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCe
Q 034017 17 TRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR 96 (106)
Q Consensus 17 ~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~ 96 (106)
..........++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..+ +..+.|+
T Consensus 16 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~ 94 (109)
T 2rs2_A 16 PRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK 94 (109)
T ss_dssp ----------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE
T ss_pred ccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE
Confidence 334555667899999999999999999999999999999999999888999999999999999999999975 5899999
Q ss_pred EEEEEeccc
Q 034017 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~l~v~~a~~ 105 (106)
.|+|.++.+
T Consensus 95 ~l~V~~a~~ 103 (109)
T 2rs2_A 95 TIDPKVAFP 103 (109)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 58
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=3.1e-21 Score=105.87 Aligned_cols=81 Identities=19% Similarity=0.389 Sum_probs=76.0
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||+++++++|+++|+.| .|..+.++.+ .++..+|+|||+|.+.++|++|+. +++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 44567899999999999999999999999 8999999998 589999999999999999999999 99999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++++
T Consensus 83 ~a~~ 86 (91)
T 2dgw_A 83 REKS 86 (91)
T ss_dssp EESS
T ss_pred ECCc
Confidence 9865
No 59
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.2e-21 Score=108.05 Aligned_cols=84 Identities=30% Similarity=0.616 Sum_probs=76.5
Q ss_pred ccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 034017 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.+..+.. ..+|||||+|.+.++|++|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34455679999999999999999999999999999999988763 3789999999999999999999999999999999
Q ss_pred EEeccc
Q 034017 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|.++.+
T Consensus 87 v~~a~~ 92 (103)
T 2cq3_A 87 VNNATA 92 (103)
T ss_dssp EEECCS
T ss_pred EEEccc
Confidence 999865
No 60
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.88 E-value=1.3e-21 Score=107.58 Aligned_cols=81 Identities=31% Similarity=0.585 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034017 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
....++|||+|||.++++++|+++|+.||.|..+.+..+ ++..+|||||+|.+.++|++|+..|++..+.|++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999874 788999999999999999999999999999999999999
Q ss_pred ccc
Q 034017 103 AHK 105 (106)
Q Consensus 103 a~~ 105 (106)
+++
T Consensus 83 a~~ 85 (92)
T 2dgv_A 83 DRN 85 (92)
T ss_dssp CSC
T ss_pred cCC
Confidence 875
No 61
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.9e-21 Score=108.22 Aligned_cols=83 Identities=29% Similarity=0.517 Sum_probs=75.8
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||..+++++|+++|+.||.|..+.+..+..+ .+|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34556899999999999999999999999999999999888533 5789999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.++.+
T Consensus 88 ~~a~~ 92 (103)
T 2cqi_A 88 NWATT 92 (103)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99865
No 62
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=113.23 Aligned_cols=85 Identities=24% Similarity=0.391 Sum_probs=73.6
Q ss_pred cccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecC-CCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeE
Q 034017 19 LLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDR-VTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 19 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 97 (106)
........++|||+|||.++++++|+++|+.|| |..+.+..+. .++..+|||||+|.+.++|++|+ .|++..+.|+.
T Consensus 12 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 12 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp --------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred CcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 344556789999999999999999999999999 9999999887 58889999999999999999999 79999999999
Q ss_pred EEEEeccc
Q 034017 98 IRVNYAHK 105 (106)
Q Consensus 98 l~v~~a~~ 105 (106)
|+|+++++
T Consensus 90 l~V~~a~~ 97 (100)
T 2j76_E 90 IRVDVADQ 97 (100)
T ss_dssp CCCEECCC
T ss_pred EEEEeccC
Confidence 99999875
No 63
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.3e-21 Score=108.45 Aligned_cols=80 Identities=16% Similarity=0.266 Sum_probs=73.9
Q ss_pred CCCCceEEEcCCCCCCcHHHHH----HHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEE
Q 034017 23 ANSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l 98 (106)
....++|||+|||+++++++|+ ++|+.||.|..+.++.++.+ +|||||+|.+.++|++|+..||+..+.|++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456899999999999999999 99999999999999888644 7899999999999999999999999999999
Q ss_pred EEEeccc
Q 034017 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~a~~ 105 (106)
+|+++++
T Consensus 83 ~V~~a~~ 89 (96)
T 2dgx_A 83 LVSLATG 89 (96)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9999875
No 64
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1e-21 Score=110.27 Aligned_cols=82 Identities=23% Similarity=0.429 Sum_probs=76.2
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCC-CCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVT-GQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
+....++|||+|||.++++++|+++|+.|| |..+.++.++.+ +..+|||||+|.+.++|++|+ .|++..+.|++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 344578999999999999999999999999 999999998876 889999999999999999999 89999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
+++.+
T Consensus 89 ~~a~~ 93 (104)
T 1wi8_A 89 DVADQ 93 (104)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99865
No 65
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.87 E-value=3.8e-22 Score=110.24 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||+++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|++.|++..+.|++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999988888888888999999999999999999999999999999999999998
Q ss_pred cc
Q 034017 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 66
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=5.9e-22 Score=111.16 Aligned_cols=83 Identities=33% Similarity=0.535 Sum_probs=77.9
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcc-cCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCee-eCCeEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQ-HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL-LDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~-~~~~~l~ 99 (106)
.....++|||+|||.++++++|+++|+. ||.|..+.++.+. ++..+|||||+|.+.++|++|+..|++.. +.|++|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EEeccc
Q 034017 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|.++.+
T Consensus 84 v~~a~~ 89 (104)
T 2dhg_A 84 LSVAIP 89 (104)
T ss_dssp CCBCCC
T ss_pred EEEccC
Confidence 999864
No 67
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.87 E-value=6.9e-22 Score=114.37 Aligned_cols=85 Identities=27% Similarity=0.456 Sum_probs=79.2
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||..+++++|+++|+.||.|..+.++.+..++..+|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34445789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
+++.+
T Consensus 97 ~~a~~ 101 (126)
T 3ex7_B 97 DWCFV 101 (126)
T ss_dssp EESEE
T ss_pred EEecC
Confidence 99864
No 68
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.87 E-value=2.8e-21 Score=115.52 Aligned_cols=83 Identities=28% Similarity=0.508 Sum_probs=78.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034017 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
....++|||+|||.++++++|+++|+.||.|..+.++.++.++..++||||+|.+.++|++|+..|++..+.|+.|+|++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccc
Q 034017 103 AHK 105 (106)
Q Consensus 103 a~~ 105 (106)
|.+
T Consensus 116 a~~ 118 (156)
T 1h2v_Z 116 DAG 118 (156)
T ss_dssp ESC
T ss_pred CCC
Confidence 864
No 69
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=6.6e-22 Score=112.07 Aligned_cols=87 Identities=29% Similarity=0.584 Sum_probs=77.7
Q ss_pred cccccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCe
Q 034017 17 TRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR 96 (106)
Q Consensus 17 ~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~ 96 (106)
..........++|||+|||.++++++|+++|+.||.|..+.+..+. +..+|||||+|.+.++|++|+..|++..+.|+
T Consensus 20 S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 20 HMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp --CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3445556678999999999999999999999999999999998875 34789999999999999999999999999999
Q ss_pred EEEEEeccc
Q 034017 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~l~v~~a~~ 105 (106)
+|+|+++++
T Consensus 98 ~l~V~~a~~ 106 (109)
T 2err_A 98 KIEVNNATA 106 (109)
T ss_dssp ECEEEECCC
T ss_pred EEEEEECCC
Confidence 999999875
No 70
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=7.7e-22 Score=110.90 Aligned_cols=84 Identities=38% Similarity=0.662 Sum_probs=78.7
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||+.+++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+.. ++..+.|++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3456789999999999999999999999999999999999988899999999999999999999998 999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
+++.+
T Consensus 90 ~~a~~ 94 (105)
T 2dh8_A 90 KPCTP 94 (105)
T ss_dssp CCSCC
T ss_pred EEccC
Confidence 99864
No 71
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-22 Score=110.32 Aligned_cols=82 Identities=27% Similarity=0.434 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||+++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|++.|++..+.|+.++++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999999888999999999999999999999999999999999999887
Q ss_pred cc
Q 034017 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
+.
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 72
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=7.2e-21 Score=106.59 Aligned_cols=83 Identities=29% Similarity=0.516 Sum_probs=76.7
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||..+++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|+. ++..+.|++|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 445567899999999999999999999999999999999998889999999999999999999998 578899999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.++.+
T Consensus 88 ~~a~~ 92 (103)
T 2cqg_A 88 KLPNS 92 (103)
T ss_dssp ECCCT
T ss_pred EecCC
Confidence 99865
No 73
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=5.4e-21 Score=108.13 Aligned_cols=82 Identities=23% Similarity=0.451 Sum_probs=74.3
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+.. ++..++||||+|.+.++|++|++.|++..+.|++|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 4445678999999999999999999999999999998854 4457899999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
+++++
T Consensus 94 ~~a~~ 98 (109)
T 1x4a_A 94 EFPRS 98 (109)
T ss_dssp ECCCC
T ss_pred EEccc
Confidence 99865
No 74
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=2.3e-21 Score=115.99 Aligned_cols=84 Identities=37% Similarity=0.623 Sum_probs=79.0
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||+++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|++|+..|++..+.|++|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 33457899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++++
T Consensus 146 ~a~~ 149 (158)
T 2kn4_A 146 MARY 149 (158)
T ss_dssp EECC
T ss_pred ECCC
Confidence 9875
No 75
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.87 E-value=2.5e-22 Score=117.72 Aligned_cols=86 Identities=36% Similarity=0.601 Sum_probs=79.8
Q ss_pred ccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 034017 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|++|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34445678999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred EEeccc
Q 034017 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|+++++
T Consensus 121 V~~a~~ 126 (135)
T 2lea_A 121 VQMARY 126 (135)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999875
No 76
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.87 E-value=1.5e-21 Score=111.99 Aligned_cols=82 Identities=22% Similarity=0.301 Sum_probs=75.7
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCC---eeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGE---IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l 98 (106)
.....++|||+|||+++++++|+++|+.||. |..+.++.++. ++.+|||||+|.+.++|++|+. +++..++|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3456789999999999999999999999998 89999999874 8899999999999999999999 99999999999
Q ss_pred EEEeccc
Q 034017 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~a~~ 105 (106)
+|.++.+
T Consensus 91 ~V~~a~~ 97 (118)
T 2db1_A 91 EVFKSHR 97 (118)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9999854
No 77
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.87 E-value=4.2e-22 Score=105.74 Aligned_cols=75 Identities=29% Similarity=0.533 Sum_probs=71.7
Q ss_pred eEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 28 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
+|||+|||+++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|++|++ +++..++|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999988889999999999999999999998 8999999999999986
No 78
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.87 E-value=2.6e-21 Score=111.68 Aligned_cols=80 Identities=25% Similarity=0.650 Sum_probs=76.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+ .|++..+.|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999888999999999999999999999 799999999999999986
Q ss_pred c
Q 034017 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 5
No 79
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.87 E-value=5.8e-21 Score=115.20 Aligned_cols=83 Identities=25% Similarity=0.451 Sum_probs=77.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034017 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
....++|||+|||..+++++|+++|+.||.|..+.+..++.++..+|||||+|.+.++|++|+..|++..+.|+.|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccc
Q 034017 103 AHK 105 (106)
Q Consensus 103 a~~ 105 (106)
+.+
T Consensus 149 a~~ 151 (165)
T 1rk8_A 149 CFV 151 (165)
T ss_dssp SEE
T ss_pred ecC
Confidence 864
No 80
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.9e-21 Score=109.93 Aligned_cols=82 Identities=26% Similarity=0.444 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCC-eeEEEEe-ecCCCCCeeeEEEEEecCHHHHHHHHHHhC--CeeeCCeEEE
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVI-CDRVTGQSRGYGFVKFASEAAAGEAIKEMD--GLLLDGRNIR 99 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-i~~~~~~-~~~~~~~~~g~~fv~f~~~~~a~~al~~l~--~~~~~~~~l~ 99 (106)
...++|||+|||.++++++|+++|+.||. |..+.++ .+..++..+|||||+|.+.++|++|+..|+ +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999988 677778899999999999999999999996 5899999999
Q ss_pred EEeccc
Q 034017 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|.++++
T Consensus 86 V~~a~~ 91 (109)
T 2dis_A 86 VDWAEP 91 (109)
T ss_dssp EEESCS
T ss_pred EEEcCC
Confidence 999875
No 81
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=9e-21 Score=107.94 Aligned_cols=84 Identities=21% Similarity=0.478 Sum_probs=77.6
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeee-------
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL------- 93 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~------- 93 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..+. ++..+|||||+|.+.++|++|+..|++..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 344567899999999999999999999999999999999998 899999999999999999999999999998
Q ss_pred -CCeEEEEEeccc
Q 034017 94 -DGRNIRVNYAHK 105 (106)
Q Consensus 94 -~~~~l~v~~a~~ 105 (106)
.++.|.|.|+++
T Consensus 99 ~~~~~l~v~~a~p 111 (114)
T 1x5o_A 99 APTEPLLCKFSGP 111 (114)
T ss_dssp CCSSCBEEEECCC
T ss_pred CCCCceeEEccCC
Confidence 577899999875
No 82
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=3.7e-21 Score=109.23 Aligned_cols=83 Identities=19% Similarity=0.359 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHH---HHhcccCCeeEEEEeecCCCC---CeeeEEEEEecCHHHHHHHHHHhCCeeeCCe
Q 034017 23 ANSRTKLFIGGLSYDTNETVLK---DAFGQHGEIIEVKVICDRVTG---QSRGYGFVKFASEAAAGEAIKEMDGLLLDGR 96 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~---~~f~~~g~i~~~~~~~~~~~~---~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~ 96 (106)
....++|||+|||+++++++|+ ++|+.||.|..+.+..+..++ ..+|||||+|.+.++|++|+..|++..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457899999999999999999 999999999999998876543 4569999999999999999999999999999
Q ss_pred EEEEEeccc
Q 034017 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~l~v~~a~~ 105 (106)
+|+|.+|.+
T Consensus 92 ~l~V~~a~~ 100 (111)
T 2cpi_A 92 TLKASLGTT 100 (111)
T ss_dssp EEEEESCCC
T ss_pred EEEEEeccc
Confidence 999999865
No 83
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.86 E-value=2.5e-22 Score=117.12 Aligned_cols=84 Identities=23% Similarity=0.441 Sum_probs=77.9
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeE--EEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCe----eeC
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL----LLD 94 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~----~~~ 94 (106)
......++|||+|||+++++++|+++|+.||.|.. +.+++++.++.++|||||+|.+. +|.+|+..|++. .+.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34456789999999999999999999999999966 99999998999999999999999 999999999999 999
Q ss_pred CeEEEEEeccc
Q 034017 95 GRNIRVNYAHK 105 (106)
Q Consensus 95 ~~~l~v~~a~~ 105 (106)
|+.|+|+++++
T Consensus 97 gr~l~V~~a~~ 107 (131)
T 2m2b_A 97 GKTINVEFAKG 107 (131)
T ss_dssp GCCCCCEECCC
T ss_pred CEEEEEEECCC
Confidence 99999999864
No 84
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.5e-21 Score=109.67 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=70.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhC--CeeeCCeEEEE
Q 034017 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD--GLLLDGRNIRV 100 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~--~~~~~~~~l~v 100 (106)
+...++|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|+..++ +..+.|++|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 446789999999999999999999999999999999864 5899999999999999999886 47899999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.+|++
T Consensus 87 ~~A~~ 91 (105)
T 1sjq_A 87 QFSNH 91 (105)
T ss_dssp CCCSS
T ss_pred EEcCC
Confidence 99865
No 85
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.6e-21 Score=110.37 Aligned_cols=82 Identities=18% Similarity=0.209 Sum_probs=76.2
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCe-eEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEI-IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
.+...++|||+|||+++++++|+++|+.||.| ..+.++.++ ++..+|||||+|.+.++|++|+.. ++..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 44567899999999999999999999999999 889999988 899999999999999999999996 999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.++.+
T Consensus 89 ~~a~~ 93 (114)
T 2cpy_A 89 HVVTL 93 (114)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99864
No 86
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=6.2e-22 Score=105.49 Aligned_cols=76 Identities=39% Similarity=0.672 Sum_probs=72.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
++|||+|||.++++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|++|+..++ ..+.|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999988 9999999999986
No 87
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1e-21 Score=113.47 Aligned_cols=84 Identities=23% Similarity=0.323 Sum_probs=75.7
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
.+....++|||+|||+++++++|+++|+.||.|..+.++.+..++..+|||||+|.+.++|++|+. +++..++|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 345567899999999999999999999999999876566666689999999999999999999999 9999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.++.+
T Consensus 99 ~~a~~ 103 (124)
T 1wel_A 99 HPITK 103 (124)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99864
No 88
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.86 E-value=3e-22 Score=109.74 Aligned_cols=78 Identities=36% Similarity=0.676 Sum_probs=73.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 034017 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~~ 105 (106)
++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.+ |+.|+..|++..+.|++|+|++|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999888999999999999999 9999999999999999999999865
No 89
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.2e-21 Score=109.27 Aligned_cols=80 Identities=36% Similarity=0.599 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|+.. ++..+.|++|+|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 358999999999999999999999999999999999988899999999999999999999997 9999999999999986
Q ss_pred c
Q 034017 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 105 ~ 105 (116)
T 1x4b_A 105 A 105 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 90
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.86 E-value=2.9e-21 Score=113.31 Aligned_cols=83 Identities=22% Similarity=0.290 Sum_probs=76.5
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCC---eeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGE---IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 97 (106)
.+....++|||+|||+++++++|+++|+.||. |..+.++.++. ++++|||||+|.+.++|++|++ +++..++|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34456789999999999999999999999998 88999999885 9999999999999999999999 9999999999
Q ss_pred EEEEeccc
Q 034017 98 IRVNYAHK 105 (106)
Q Consensus 98 l~v~~a~~ 105 (106)
|+|.++.+
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99999854
No 91
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.1e-21 Score=107.54 Aligned_cols=83 Identities=22% Similarity=0.330 Sum_probs=75.5
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeE-EEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
......++|||+|||+++++++|+++|+.||.|.. +.+..+ .++..+|||||+|.+.++|++|+.. ++..++|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 34456789999999999999999999999999987 888777 5899999999999999999999997 99999999999
Q ss_pred EEeccc
Q 034017 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|.++.+
T Consensus 88 v~~~~~ 93 (104)
T 1wg5_A 88 IFKSSR 93 (104)
T ss_dssp EEEECT
T ss_pred EEECCH
Confidence 998764
No 92
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.86 E-value=3.9e-21 Score=108.19 Aligned_cols=82 Identities=26% Similarity=0.402 Sum_probs=74.1
Q ss_pred CCCCCceEEEcCCCCCC------cHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCC
Q 034017 22 DANSRTKLFIGGLSYDT------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG 95 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~ 95 (106)
.....++|||+|||+.+ ++++|+++|+.||.|..+.+. +.+|.++|||||+|.+.++|++|+..|+|..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 33447899999999999 789999999999999999887 3478899999999999999999999999999999
Q ss_pred e-EEEEEeccc
Q 034017 96 R-NIRVNYAHK 105 (106)
Q Consensus 96 ~-~l~v~~a~~ 105 (106)
+ +|+|.++..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 8 999999853
No 93
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.85 E-value=6.1e-21 Score=110.75 Aligned_cols=80 Identities=14% Similarity=0.373 Sum_probs=71.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHH----HHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEE
Q 034017 23 ANSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l 98 (106)
....++|||+|||+.+++++|+ ++|++||.|..+.+.. ++..+|||||+|.+.++|+.|+..|+|..+.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999998876 6899999999887742 67789999999999999999999999999999999
Q ss_pred EEEeccc
Q 034017 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~a~~ 105 (106)
+|.||++
T Consensus 103 ~V~~a~~ 109 (127)
T 2a3j_A 103 VITFSET 109 (127)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999875
No 94
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=105.25 Aligned_cols=79 Identities=23% Similarity=0.263 Sum_probs=69.9
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCee--eCCeEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL--LDGRNI 98 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~--~~~~~l 98 (106)
......++|||+|||.++++++|+++|++||.|..+.+++. +|+|||+|.+.++|++|+..+++.. +.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34446789999999999999999999999999999988743 4799999999999999999998764 889999
Q ss_pred EEEeccc
Q 034017 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~a~~ 105 (106)
+|++|++
T Consensus 90 ~V~~S~~ 96 (100)
T 3r27_A 90 FVNYSTS 96 (100)
T ss_dssp EEEECSC
T ss_pred EEEeccc
Confidence 9999975
No 95
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.85 E-value=9.6e-21 Score=107.14 Aligned_cols=80 Identities=30% Similarity=0.557 Sum_probs=70.9
Q ss_pred ccccCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeE
Q 034017 18 RLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 18 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 97 (106)
.........++|||+|||.++++++|+++|+.||.|..+.+. +|||||+|.+.++|++|+..|++..+.|+.
T Consensus 23 ~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 23 HRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp -----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred cccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 334555678999999999999999999999999999999886 579999999999999999999999999999
Q ss_pred EEEEeccc
Q 034017 98 IRVNYAHK 105 (106)
Q Consensus 98 l~v~~a~~ 105 (106)
|+|+++++
T Consensus 95 l~V~~a~~ 102 (108)
T 2jvo_A 95 LEVVYSKL 102 (108)
T ss_dssp CEEESCSC
T ss_pred EEEEEecC
Confidence 99999875
No 96
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.85 E-value=2.1e-20 Score=103.88 Aligned_cols=81 Identities=19% Similarity=0.418 Sum_probs=70.4
Q ss_pred cccccCCCCCceEEEcCCCC-CCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCC
Q 034017 17 TRLLSDANSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG 95 (106)
Q Consensus 17 ~~~~~~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~ 95 (106)
..........++|||+|||. ++++++|+++|+.||.|..+.+. +|||||+|.+.++|++|+..+++..+.|
T Consensus 13 ~~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 13 GLVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp ------CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred ccccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34445566789999999998 99999999999999999999882 5799999999999999999999999999
Q ss_pred eEEEEEeccc
Q 034017 96 RNIRVNYAHK 105 (106)
Q Consensus 96 ~~l~v~~a~~ 105 (106)
++|+|+++++
T Consensus 85 ~~l~V~~a~~ 94 (97)
T 2xnq_A 85 KKLILEVSSS 94 (97)
T ss_dssp EECEEEECCC
T ss_pred EEEEEEecCC
Confidence 9999999875
No 97
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=105.00 Aligned_cols=80 Identities=31% Similarity=0.496 Sum_probs=72.2
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.| .++.+ .++..+|||||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44568999999999999999999999999987 45555 478899999999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++++
T Consensus 87 ~a~~ 90 (101)
T 2fc9_A 87 LQGP 90 (101)
T ss_dssp ECSS
T ss_pred EcCC
Confidence 9865
No 98
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.85 E-value=4.5e-21 Score=121.10 Aligned_cols=81 Identities=32% Similarity=0.505 Sum_probs=76.2
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccC--CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
..++|||+|||+++++++|+++|+.|| .|..+.++.++.++..+|||||+|.+.++|++|+..|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999988999999999999999999999999999999999999999
Q ss_pred ccc
Q 034017 103 AHK 105 (106)
Q Consensus 103 a~~ 105 (106)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 753
No 99
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.85 E-value=2.3e-20 Score=116.43 Aligned_cols=82 Identities=28% Similarity=0.555 Sum_probs=76.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||+++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|++|+..+++..+.|+.+++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred cc
Q 034017 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
..
T Consensus 93 ~~ 94 (213)
T 4f02_A 93 QR 94 (213)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 100
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.6e-20 Score=104.20 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=69.2
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHh--CCeeeCCeEEEE
Q 034017 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM--DGLLLDGRNIRV 100 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l--~~~~~~~~~l~v 100 (106)
....++|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|+..+ ++..+.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345689999999999999999999999999999988754 589999999999999999976 567899999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.+|++
T Consensus 86 ~~a~~ 90 (101)
T 2cq1_A 86 QYSNH 90 (101)
T ss_dssp EECSC
T ss_pred EEcCc
Confidence 99875
No 101
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.8e-20 Score=110.60 Aligned_cols=84 Identities=37% Similarity=0.673 Sum_probs=79.4
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|++..++|++|+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
||++
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9975
No 102
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.8e-20 Score=105.09 Aligned_cols=77 Identities=23% Similarity=0.357 Sum_probs=71.4
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCC-----e
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG-----R 96 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~-----~ 96 (106)
+....++|||+|||+++++++|+++|+.||.|..+.++.+ |||||+|.+.++|++|++.|++..+.| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456789999999999999999999999999999999765 799999999999999999999999999 9
Q ss_pred EEEEEeccc
Q 034017 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~l~v~~a~~ 105 (106)
.|+|+++.+
T Consensus 84 ~i~V~~a~~ 92 (108)
T 1x4c_A 84 YIRVKVDGP 92 (108)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999999865
No 103
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=3.3e-20 Score=103.63 Aligned_cols=82 Identities=35% Similarity=0.627 Sum_probs=74.0
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||.++++++|+++|+.++ .+.++.+..++..+|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445678999999999999999999999774 5667777778999999999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
+++++
T Consensus 87 ~~a~~ 91 (102)
T 2fc8_A 87 DWAKP 91 (102)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99875
No 104
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.1e-20 Score=103.64 Aligned_cols=79 Identities=29% Similarity=0.546 Sum_probs=71.7
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeC--CeEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD--GRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~--~~~l~ 99 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..+ ++||||+|.+.++|++|+..|++..+. |++|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3445689999999999999999999999999999988643 579999999999999999999999999 99999
Q ss_pred EEecccC
Q 034017 100 VNYAHKD 106 (106)
Q Consensus 100 v~~a~~~ 106 (106)
|+++++.
T Consensus 87 V~~a~~~ 93 (97)
T 1why_A 87 VDFAKSG 93 (97)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998763
No 105
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.85 E-value=1.5e-20 Score=107.21 Aligned_cols=81 Identities=23% Similarity=0.413 Sum_probs=73.8
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
++...++|||+|||..+++++|+++|+.||.|..+.+..+ +..+|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999864 4458999999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++.+
T Consensus 81 ~a~~ 84 (115)
T 3lqv_A 81 YYNA 84 (115)
T ss_dssp ECCH
T ss_pred EecC
Confidence 9864
No 106
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=105.98 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=73.9
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.+...++|||+|||+++++++|+++|+.||.+ .+.++.++ ++.++|||||+|.+.++|++|+. +++..+.++.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 44567899999999999999999999999954 99999988 89999999999999999999996 79999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++.+
T Consensus 88 ~~~~ 91 (102)
T 1wez_A 88 LNST 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 8754
No 107
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.85 E-value=9.2e-21 Score=107.67 Aligned_cols=81 Identities=21% Similarity=0.223 Sum_probs=71.7
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccC-CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
..+...++|||+|||+++++++|+++|+.|| .|..+.+... ..+|||||+|.+.++|++|++.|++..+.|++|+
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3455678999999999999999999999999 8999888532 3678999999999999999999999999999999
Q ss_pred EEeccc
Q 034017 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|+++..
T Consensus 99 V~~a~~ 104 (111)
T 2jvr_A 99 VERDDN 104 (111)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 999853
No 108
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=7.9e-21 Score=106.42 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=68.8
Q ss_pred CCCceEEEcCCCC-CCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCC--eeeCCeEEEE
Q 034017 24 NSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LLLDGRNIRV 100 (106)
Q Consensus 24 ~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~--~~~~~~~l~v 100 (106)
...++|||+|||+ ++++++|+++|++||.|..+.++++ +++|||+|.+.++|++|+..|++ ..+.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3578999999999 9999999999999999999998764 37999999999999999998875 4599999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.+|++
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99874
No 109
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=101.08 Aligned_cols=77 Identities=31% Similarity=0.569 Sum_probs=70.8
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHh-CCeeeCCeEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM-DGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l-~~~~~~~~~l~v 100 (106)
.....++|||+|||..+++++|+++|+.||.|..+.+..+ +|+|||+|.+.++|++|+..| ++..+.|++|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 4456789999999999999999999999999999998764 589999999999999999988 999999999999
Q ss_pred Eecc
Q 034017 101 NYAH 104 (106)
Q Consensus 101 ~~a~ 104 (106)
+||+
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 110
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=102.18 Aligned_cols=76 Identities=33% Similarity=0.616 Sum_probs=70.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+. ++||||+|.+.++|++|+..|++..+.|++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34567899999999999999999999999999999886 4699999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++.+
T Consensus 76 ~a~~ 79 (90)
T 2dnq_A 76 ASKN 79 (90)
T ss_dssp CSSC
T ss_pred ECCC
Confidence 9865
No 111
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=106.86 Aligned_cols=79 Identities=24% Similarity=0.380 Sum_probs=72.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
....+|||+|||+++++++|+++|+.| .|..+.++.++ +|..+|||||+|.+.++|++|+ .+++..++|+.|+|..+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 346799999999999999999999999 89999999887 5889999999999999999999 58999999999999887
Q ss_pred cc
Q 034017 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 112
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.84 E-value=5.3e-20 Score=110.08 Aligned_cols=80 Identities=36% Similarity=0.658 Sum_probs=76.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 034017 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~~ 105 (106)
.++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..+++..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999988999999999999999999999999999999999999999864
No 113
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.3e-20 Score=105.57 Aligned_cols=79 Identities=22% Similarity=0.621 Sum_probs=73.0
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||..+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 93 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 93 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34556889999999999999999999999999999998765 579999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.|+++
T Consensus 94 ~~a~~ 98 (109)
T 1x4g_A 94 YWGKE 98 (109)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99875
No 114
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.84 E-value=6.3e-21 Score=105.67 Aligned_cols=81 Identities=26% Similarity=0.501 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHH----HHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEE
Q 034017 23 ANSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l 98 (106)
....++|||+|||.++++++|+ ++|+.||.|..+.+.. ++..+|||||+|.+.++|++|+..|++..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3457899999999999999999 9999999999998863 45677999999999999999999999999999999
Q ss_pred EEEecccC
Q 034017 99 RVNYAHKD 106 (106)
Q Consensus 99 ~v~~a~~~ 106 (106)
+|++++++
T Consensus 82 ~v~~a~~~ 89 (97)
T 1nu4_A 82 RIQYAKTD 89 (97)
T ss_dssp EEEECSSC
T ss_pred EEEEccCC
Confidence 99998763
No 115
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=107.72 Aligned_cols=78 Identities=15% Similarity=0.266 Sum_probs=70.2
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCC--eeeCCeEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LLLDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~--~~~~~~~l~ 99 (106)
.....++|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|+..+++ ..+.|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3345789999999999999999999999999999998865 58999999999999999998874 679999999
Q ss_pred EEeccc
Q 034017 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|.+|++
T Consensus 101 V~~a~~ 106 (119)
T 2ad9_A 101 IQFSNH 106 (119)
T ss_dssp EEECSS
T ss_pred EEEccC
Confidence 999865
No 116
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=8.9e-20 Score=100.23 Aligned_cols=77 Identities=27% Similarity=0.494 Sum_probs=70.7
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+.+ +||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 3455678999999999999999999999999999998863 39999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
+++++
T Consensus 77 ~~a~~ 81 (92)
T 2dgt_A 77 QLSTS 81 (92)
T ss_dssp EESSC
T ss_pred EEccC
Confidence 99865
No 117
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.84 E-value=4.2e-20 Score=110.78 Aligned_cols=81 Identities=33% Similarity=0.531 Sum_probs=77.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..+++..+.|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 36789999999999999999999999999999999998889999999999999999999999999999999999999986
Q ss_pred c
Q 034017 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 82 ~ 82 (168)
T 1b7f_A 82 P 82 (168)
T ss_dssp C
T ss_pred C
Confidence 5
No 118
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.1e-20 Score=105.52 Aligned_cols=79 Identities=24% Similarity=0.412 Sum_probs=72.1
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
..+...++|||+|||.++++++|+++|+.||.|..+.+.. .+|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445578999999999999999999999999999998873 4589999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.|+++
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 99875
No 119
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.84 E-value=3.2e-21 Score=102.27 Aligned_cols=75 Identities=28% Similarity=0.506 Sum_probs=70.9
Q ss_pred eEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 28 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
+|||+|||.++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|++|++. ++..+.|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999888899999999999999999999994 889999999999875
No 120
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.83 E-value=3.2e-21 Score=108.87 Aligned_cols=83 Identities=14% Similarity=0.244 Sum_probs=76.0
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCC---eeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGE---IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 97 (106)
......++|||+|||+++++++|+++|+.||. |..+.++.++. +..+|||||+|.+.++|++|+. +++..++|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34557889999999999999999999999887 89999998885 8899999999999999999999 9999999999
Q ss_pred EEEEeccc
Q 034017 98 IRVNYAHK 105 (106)
Q Consensus 98 l~v~~a~~ 105 (106)
|+|.++.+
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99998764
No 121
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.1e-21 Score=109.46 Aligned_cols=84 Identities=21% Similarity=0.356 Sum_probs=71.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..+..++..+|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34457899999999999999999999999998433222222267789999999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++.+
T Consensus 101 ~a~~ 104 (115)
T 2cpx_A 101 FGKN 104 (115)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9865
No 122
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-20 Score=102.88 Aligned_cols=79 Identities=30% Similarity=0.522 Sum_probs=71.4
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|..+ ..++..+|||||+|.+.++|++|+..|++..+.|++|+|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34467899999999999999999999999988766 2367889999999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++.+
T Consensus 87 ~a~~ 90 (96)
T 1fjc_A 87 YTGE 90 (96)
T ss_dssp ECSS
T ss_pred EcCC
Confidence 9864
No 123
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-21 Score=109.45 Aligned_cols=81 Identities=26% Similarity=0.409 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034017 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
....++|||+|||.++++++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|++|++ |++..+.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999999999999999999998877 555665577889999999999999999999 999999999999999
Q ss_pred ccc
Q 034017 103 AHK 105 (106)
Q Consensus 103 a~~ 105 (106)
+.+
T Consensus 92 a~~ 94 (101)
T 1fj7_A 92 PKG 94 (101)
T ss_dssp CSC
T ss_pred cCC
Confidence 865
No 124
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=5.5e-20 Score=99.71 Aligned_cols=74 Identities=16% Similarity=0.294 Sum_probs=69.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
...-|||+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.+.++|.+|++.||+..++|+.|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 456799999999999999999999999999999865 46999999999999999999999999999999999885
No 125
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=102.97 Aligned_cols=79 Identities=25% Similarity=0.436 Sum_probs=70.5
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|. +.++.+ ..+|||||+|.+.++|++|+..|++..+.|++|+|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445578999999999999999999999999986 555543 467899999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++++
T Consensus 90 ~a~~ 93 (97)
T 2e5j_A 90 LARQ 93 (97)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 9875
No 126
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.83 E-value=8.5e-20 Score=109.88 Aligned_cols=82 Identities=28% Similarity=0.513 Sum_probs=77.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEe
Q 034017 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~ 102 (106)
....++|||+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|++|+..|++..++|++|+|++
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cc
Q 034017 103 AH 104 (106)
Q Consensus 103 a~ 104 (106)
|.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 127
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=101.75 Aligned_cols=72 Identities=28% Similarity=0.460 Sum_probs=66.7
Q ss_pred ceEEEcCCCCCC------cHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCe-EEE
Q 034017 27 TKLFIGGLSYDT------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR-NIR 99 (106)
Q Consensus 27 ~~l~v~~lp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~-~l~ 99 (106)
++|||+|||..+ ++++|+++|++||.|..+.+. +.++.++|||||+|.+.++|++|+..|++..+.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 789999999999999999887 34788999999999999999999999999999999 887
Q ss_pred E
Q 034017 100 V 100 (106)
Q Consensus 100 v 100 (106)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 128
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=8e-20 Score=100.04 Aligned_cols=76 Identities=30% Similarity=0.550 Sum_probs=70.2
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+.+ +||||+|.+.++|++|+..|++..+.|++|+|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445678999999999999999999999999999998863 399999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++++
T Consensus 77 ~a~~ 80 (90)
T 2dnp_A 77 LSTK 80 (90)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9865
No 129
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5.2e-20 Score=102.43 Aligned_cols=78 Identities=31% Similarity=0.571 Sum_probs=71.5
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||..+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|++|+..|++..+.|++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3346789999999999999999999999999999988754 5799999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++.+
T Consensus 85 ~a~~ 88 (99)
T 2cpj_A 85 FACH 88 (99)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 9865
No 130
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.83 E-value=7.3e-20 Score=103.64 Aligned_cols=76 Identities=25% Similarity=0.524 Sum_probs=69.7
Q ss_pred CCCCCceEEEcCCCCC-CcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 22 DANSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
+....++|||+|||+. +++++|+++|+.||.|..+.+ .+|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3345689999999999 999999999999999999988 4579999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
+++++
T Consensus 95 ~~a~~ 99 (110)
T 1wf1_A 95 NMAGE 99 (110)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 99863
No 131
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.4e-19 Score=99.71 Aligned_cols=76 Identities=34% Similarity=0.564 Sum_probs=69.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhccc--CCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQH--GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
.....++|||+|||..+++++|+++|+.| |.|..+.+. +|||||+|.+.++|++|+..|++..+.|++|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34467899999999999999999999999 889888763 46999999999999999999999999999999
Q ss_pred EEeccc
Q 034017 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|+++++
T Consensus 83 v~~a~~ 88 (99)
T 2cpd_A 83 VTLAKP 88 (99)
T ss_dssp EECCCC
T ss_pred EEECCC
Confidence 999875
No 132
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.6e-20 Score=103.07 Aligned_cols=76 Identities=20% Similarity=0.279 Sum_probs=68.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCC--eeeCCeEEEEE
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LLLDGRNIRVN 101 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~--~~~~~~~l~v~ 101 (106)
...++|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|+..|++ ..+.|++|+|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45689999999999999999999999999999988653 58999999999999999998864 45999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++++
T Consensus 87 ~a~~ 90 (104)
T 1wex_A 87 YSTS 90 (104)
T ss_dssp ECSS
T ss_pred EccC
Confidence 9864
No 133
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.1e-20 Score=105.52 Aligned_cols=75 Identities=16% Similarity=0.183 Sum_probs=69.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
..++|||+|||.++++++|+++|++||.|..+.+.. .+++|||+|.+.++|++|+..||+..+.|+.|+|+|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999998764 45799999999999999999999999999999999986
Q ss_pred c
Q 034017 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 134
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.83 E-value=4.5e-20 Score=112.54 Aligned_cols=81 Identities=27% Similarity=0.499 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||..+++++|+++|+.||.|..+.+..+. ++..+|||||+|.+.++|++|+..|++..+.|+.|+|++|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 446899999999999999999999999999999999988 8899999999999999999999999999999999999998
Q ss_pred cc
Q 034017 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
..
T Consensus 165 ~~ 166 (177)
T 2f3j_A 165 AS 166 (177)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 135
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.83 E-value=2.1e-20 Score=104.54 Aligned_cols=78 Identities=31% Similarity=0.622 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..+. ++..+|||||+|.+.++|++|+. ++..+.|++|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 346899999999999999999999999999999999998 89999999999999999999998 899999999999887
Q ss_pred c
Q 034017 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
.
T Consensus 84 ~ 84 (102)
T 2xs2_A 84 I 84 (102)
T ss_dssp E
T ss_pred C
Confidence 4
No 136
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=1.5e-19 Score=101.22 Aligned_cols=74 Identities=32% Similarity=0.592 Sum_probs=68.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.+. ++||||+|.+.++|++|+..|++..+.|+.|+|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 456889999999999999999999999999999885 359999999999999999999999999999999998
Q ss_pred cc
Q 034017 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 81 ~~ 82 (103)
T 2dgu_A 81 KP 82 (103)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 137
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.82 E-value=1.1e-19 Score=99.24 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=69.2
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
..++|||+|||+++++++|+++|+.| .|..+.+. ..+|||||+|.+.++|++|++.|++..+.|++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 56789999999999999999999999 89988884 467899999999999999999999999999999999986
Q ss_pred cC
Q 034017 105 KD 106 (106)
Q Consensus 105 ~~ 106 (106)
.+
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 138
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-20 Score=104.16 Aligned_cols=74 Identities=26% Similarity=0.513 Sum_probs=69.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 034017 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~~ 105 (106)
++|||+|||.++++++|+++|+.||.|..+.+..+ .+|||||+|.+.++|++|+..|++..+.|+.|+|+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 47999999999999999999999999999998766 568999999999999999999999999999999999865
No 139
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=7.6e-20 Score=108.63 Aligned_cols=80 Identities=31% Similarity=0.542 Sum_probs=73.6
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
......++|||+|||+++++++|+++|+.||.|..+.+..+ ++|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456799999999999999999999999999999999765 4689999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
+++++
T Consensus 143 ~~a~~ 147 (150)
T 2i2y_A 143 ELSNG 147 (150)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99875
No 140
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.82 E-value=2.1e-19 Score=110.29 Aligned_cols=83 Identities=29% Similarity=0.525 Sum_probs=78.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..|++..++|+.|+|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56799999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred ccC
Q 034017 104 HKD 106 (106)
Q Consensus 104 ~~~ 106 (106)
.+.
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 141
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.4e-20 Score=100.98 Aligned_cols=81 Identities=22% Similarity=0.287 Sum_probs=71.5
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEE-EEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
.....++|||+|||+++++++|+++|+.||.|..+ .++.++.++ .|||+|.+.++|++|+..|++..+.|++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 33457899999999999999999999999999999 477665332 3999999999999999999999999999999
Q ss_pred EecccC
Q 034017 101 NYAHKD 106 (106)
Q Consensus 101 ~~a~~~ 106 (106)
.++.+.
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 998763
No 142
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.6e-20 Score=106.49 Aligned_cols=81 Identities=25% Similarity=0.349 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCe----eEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEE
Q 034017 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEI----IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l 98 (106)
.....+|||+|||+++++++|+++|+.||.| ..+.++.+. +++++|||||+|.+.++|++|+.. ++..++++.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3567899999999999999999999999875 688888885 899999999999999999999996 9999999999
Q ss_pred EEEeccc
Q 034017 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~a~~ 105 (106)
+|..+.+
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988753
No 143
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.82 E-value=2.7e-19 Score=111.14 Aligned_cols=82 Identities=23% Similarity=0.502 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..+..++..+|+|||+|.+.++|.+|+..|++..++|++|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cc
Q 034017 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 203 ~~ 204 (216)
T 2qfj_A 203 VT 204 (216)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 144
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.82 E-value=2.8e-19 Score=109.62 Aligned_cols=84 Identities=33% Similarity=0.571 Sum_probs=77.4
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
..+...++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|+.. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3445678999999999999999999999999999999999988899999999999999999999985 899999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.++.+
T Consensus 87 ~~~~~ 91 (196)
T 1l3k_A 87 KRAVS 91 (196)
T ss_dssp EECCC
T ss_pred ecccC
Confidence 98753
No 145
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=7.8e-22 Score=112.77 Aligned_cols=82 Identities=29% Similarity=0.471 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeE--------EEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCC
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--------VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG 95 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~ 95 (106)
...++|||+|||.++++++|+++|+.||.|.. +.+..++.++..+|||||+|.+.++|++|+..|++..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45688999999999999999999999999988 8888887788899999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 034017 96 RNIRVNYAHK 105 (106)
Q Consensus 96 ~~l~v~~a~~ 105 (106)
++|+|+++.+
T Consensus 85 ~~l~V~~a~~ 94 (116)
T 2lcw_A 85 NPIKVSFATR 94 (116)
Confidence 9999999865
No 146
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.9e-20 Score=100.83 Aligned_cols=76 Identities=28% Similarity=0.508 Sum_probs=67.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCC-eeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCC-eeeCCeEEEE
Q 034017 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG-LLLDGRNIRV 100 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~-~~~~~~~l~v 100 (106)
....++|||+|||.++++++|+++|+.||. +..+.+. .+|||||+|.+.++|++|+..|++ ..+.|++|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 446789999999999999999999999998 6655552 357999999999999999999999 9999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
+++.+
T Consensus 78 ~~a~~ 82 (93)
T 2cqh_A 78 DYSVS 82 (93)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99865
No 147
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=8.6e-20 Score=103.66 Aligned_cols=77 Identities=13% Similarity=0.235 Sum_probs=68.8
Q ss_pred CCCCceEEEcCCCCC-CcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhC--CeeeCCeEEE
Q 034017 23 ANSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD--GLLLDGRNIR 99 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~--~~~~~~~~l~ 99 (106)
....++|||+|||++ +++++|+++|++||.|..+.+++. +|||||+|.+.++|++|+..|+ +..+.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445789999999998 999999999999999999998643 5899999999999999999885 4569999999
Q ss_pred EEeccc
Q 034017 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|.+|++
T Consensus 96 V~~a~~ 101 (112)
T 1x4f_A 96 VDLSEK 101 (112)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 999864
No 148
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=8.8e-20 Score=101.03 Aligned_cols=75 Identities=20% Similarity=0.444 Sum_probs=68.5
Q ss_pred CCCCceEEEcCCCC-CCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 23 ANSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 23 ~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
....++|||+|||. .+++++|+++|+.||.|..+.+. +|||||+|.+.++|++|+..|++..+.|++|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44678999999998 99999999999999999999883 5799999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++.+
T Consensus 79 ~a~~ 82 (96)
T 2kvi_A 79 VSSS 82 (96)
T ss_dssp EEEC
T ss_pred EcCc
Confidence 9864
No 149
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.7e-19 Score=103.91 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=70.3
Q ss_pred ceEEEcCC----CCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecC----HHH----HHHHHH--HhCCee
Q 034017 27 TKLFIGGL----SYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFAS----EAA----AGEAIK--EMDGLL 92 (106)
Q Consensus 27 ~~l~v~~l----p~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~----~~~----a~~al~--~l~~~~ 92 (106)
..|||+|| |+.+++.+|+.+|+.||+|..+.++.|+.+|.++||+||+|.+ ..+ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 9999999999999999999999999999999999999999996 323 788877 789999
Q ss_pred eCCeEEEEEecc
Q 034017 93 LDGRNIRVNYAH 104 (106)
Q Consensus 93 ~~~~~l~v~~a~ 104 (106)
|+|++|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999753
No 150
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.81 E-value=2.1e-20 Score=110.26 Aligned_cols=84 Identities=24% Similarity=0.429 Sum_probs=72.2
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEE------EEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeC
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEV------KVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~------~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~ 94 (106)
......++|||+|||+.+++++|+++|+.||.|..+ .+.. ..++..+|||||+|.+.++|++|+..||+..+.
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 345567899999999999999999999999988663 1111 136788999999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 034017 95 GRNIRVNYAHK 105 (106)
Q Consensus 95 ~~~l~v~~a~~ 105 (106)
|+.|+|.+|++
T Consensus 119 g~~l~V~~a~~ 129 (143)
T 3egn_A 119 GKPMVVQFARS 129 (143)
T ss_dssp TEECEEEECCC
T ss_pred CcEEEEEECCC
Confidence 99999999864
No 151
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.81 E-value=3e-19 Score=107.19 Aligned_cols=81 Identities=15% Similarity=0.343 Sum_probs=71.6
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCC--eEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG--RNI 98 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~--~~l 98 (106)
.++....+|||+||++.+++++|+++|++||.|..+.+.... .+|+|||+|.+.++|++|++.|+|..|.| ++|
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 344556779999999999999999999999999999986432 46899999999999999999999999965 999
Q ss_pred EEEeccc
Q 034017 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~a~~ 105 (106)
+|+||++
T Consensus 117 ~V~~Ak~ 123 (164)
T 1sjr_A 117 RIDFSKL 123 (164)
T ss_dssp EEEECSS
T ss_pred EEEEecC
Confidence 9999875
No 152
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.3e-19 Score=98.34 Aligned_cols=76 Identities=18% Similarity=0.364 Sum_probs=67.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||+++++++|+++|+.||.|..+ +.++.++. ||||+|.+.++|++|+. |++..+.|+.|+|+++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456799999999999999999999999999987 45544544 99999999999999999 9999999999999987
Q ss_pred cc
Q 034017 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 80 ~~ 81 (94)
T 2e5g_A 80 EQ 81 (94)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 153
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=2.7e-19 Score=121.88 Aligned_cols=81 Identities=30% Similarity=0.585 Sum_probs=77.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
..++|||+|||..+++++|.++|+.||.|..|.|+.+..++..+|||||+|.+.++|++||..||+..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred c
Q 034017 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 181 ~ 181 (437)
T 3pgw_S 181 G 181 (437)
T ss_pred C
Confidence 4
No 154
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.3e-19 Score=106.52 Aligned_cols=78 Identities=24% Similarity=0.544 Sum_probs=72.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEeccc
Q 034017 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~~ 105 (106)
++|||+|||.++++++|+++|+.||.|..+.+..++ ++..+|+|||+|.+.++|++|+..+++..+.|+.|+|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 589999999999999999999999999999999887 577899999999999999999999999999999999999754
No 155
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.81 E-value=7.3e-20 Score=105.99 Aligned_cols=82 Identities=23% Similarity=0.342 Sum_probs=73.1
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCee--EEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEII--EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~--~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l 98 (106)
..+...++|||+|||+++++++|+++|+.| .|. .+.++.++. |.++|||||+|.+.++|++|+.. ++..++|+.|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I 113 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYI 113 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEE
Confidence 344567899999999999999999999999 576 899988875 88999999999999999999984 7789999999
Q ss_pred EEEeccc
Q 034017 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~a~~ 105 (106)
+|..+.+
T Consensus 114 ~V~~a~~ 120 (126)
T 2hgm_A 114 EVFKSSQ 120 (126)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9998754
No 156
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.81 E-value=7.8e-19 Score=105.21 Aligned_cols=82 Identities=27% Similarity=0.575 Sum_probs=76.8
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCC--eEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG--RNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~--~~l~ 99 (106)
.....++|+|+|||..+++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|++..+.| ++|+
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 34467899999999999999999999999999999999998889999999999999999999999999999987 9999
Q ss_pred EEec
Q 034017 100 VNYA 103 (106)
Q Consensus 100 v~~a 103 (106)
|++|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.81 E-value=1.1e-18 Score=106.97 Aligned_cols=81 Identities=31% Similarity=0.547 Sum_probs=75.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+.. ++..++|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3458999999999999999999999999999999999988899999999999999999999986 799999999999998
Q ss_pred cc
Q 034017 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 181 ~~ 182 (196)
T 1l3k_A 181 LS 182 (196)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 158
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.80 E-value=7.2e-19 Score=109.68 Aligned_cols=79 Identities=37% Similarity=0.690 Sum_probs=73.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
...+|||+|||+++++++|+++|+.||.|..+.++.+. +..+|||||+|.+.++|++|++.||+..++|++|+|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35789999999999999999999999999999999885 4478999999999999999999999999999999999986
Q ss_pred c
Q 034017 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 180 ~ 180 (213)
T 4f02_A 180 S 180 (213)
T ss_dssp C
T ss_pred C
Confidence 4
No 159
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.80 E-value=2e-20 Score=110.09 Aligned_cols=82 Identities=20% Similarity=0.273 Sum_probs=72.3
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
..+...++|||+|||+++++++|+++|+.|| +..+.++.++ +++++|||||+|.+.++|++|+ .+++..+.++.|+|
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 3445678999999999999999999999999 6799999887 4889999999999999999999 68999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.++.+
T Consensus 118 ~~a~~ 122 (139)
T 2hgn_A 118 FLNST 122 (139)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 98764
No 160
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.80 E-value=9.7e-19 Score=101.52 Aligned_cols=80 Identities=15% Similarity=0.384 Sum_probs=70.2
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeE-EEEEecCHHHHHHHHHHhCCeeeCC--eE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGY-GFVKFASEAAAGEAIKEMDGLLLDG--RN 97 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~al~~l~~~~~~~--~~ 97 (106)
..+...-.|||+||++.+++++|+++|++||.|..+.+.... +|+ |||+|.+.++|++|++.|+|..+.| +.
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 344556778899999999999999999999999999887542 467 9999999999999999999999988 89
Q ss_pred EEEEeccc
Q 034017 98 IRVNYAHK 105 (106)
Q Consensus 98 l~v~~a~~ 105 (106)
|+|+||++
T Consensus 98 LrI~~ak~ 105 (130)
T 3zzy_A 98 LRIDFSKL 105 (130)
T ss_dssp EEEEECSC
T ss_pred EEEEecCC
Confidence 99999975
No 161
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.80 E-value=1.5e-19 Score=108.33 Aligned_cols=80 Identities=31% Similarity=0.569 Sum_probs=75.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
...+|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|++ +++..++|++|+|.+|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35689999999999999999999999999999999988789999999999999999999998 89999999999999997
Q ss_pred c
Q 034017 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 6
No 162
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.80 E-value=1.2e-18 Score=104.88 Aligned_cols=80 Identities=33% Similarity=0.464 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeC---CeEEEE
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD---GRNIRV 100 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~---~~~l~v 100 (106)
...++|||+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|++|++.|++..+. +++|+|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 357899999999999999999999999999999999886 6889999999999999999999999998765 489999
Q ss_pred Eecc
Q 034017 101 NYAH 104 (106)
Q Consensus 101 ~~a~ 104 (106)
.||+
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9984
No 163
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.80 E-value=1.2e-18 Score=104.07 Aligned_cols=80 Identities=36% Similarity=0.635 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeE--EEEE
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN--IRVN 101 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~--l~v~ 101 (106)
...++|||+|||..+++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|.+|++.|++..+.|+. |+|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 45688999999999999999999999999999999999888999999999999999999999999999999965 8888
Q ss_pred ec
Q 034017 102 YA 103 (106)
Q Consensus 102 ~a 103 (106)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 164
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.79 E-value=8.4e-19 Score=108.88 Aligned_cols=81 Identities=28% Similarity=0.597 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.++.+..++..+|||||+|.+.++|++|+..+++..+.|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 34679999999999999999999999999999999998888999999999999999999999999999999999999886
Q ss_pred c
Q 034017 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
.
T Consensus 106 ~ 106 (216)
T 2qfj_A 106 S 106 (216)
T ss_dssp S
T ss_pred C
Confidence 4
No 165
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=3.3e-18 Score=98.75 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=67.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeE-EEEEecCHHHHHHHHHHhCCeeeCC--eEEEE
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGY-GFVKFASEAAAGEAIKEMDGLLLDG--RNIRV 100 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~al~~l~~~~~~~--~~l~v 100 (106)
.....|||+|||+.+++++|+++|++||.|..+.+... .|+ |||+|.+.++|+.|++.|+|..|.| +.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 33455789999999999999999999999999988642 275 9999999999999999999999987 58999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.+|++
T Consensus 97 ~~Ak~ 101 (124)
T 2e5i_A 97 EYARP 101 (124)
T ss_dssp ECCSC
T ss_pred EEecC
Confidence 99875
No 166
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.7e-18 Score=93.80 Aligned_cols=76 Identities=28% Similarity=0.519 Sum_probs=68.5
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|+ ++++++|+++|+.||.|..+.+. ..+|||||+|.+.++|++|+..|++..+.|++|+|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 4446789999995 89999999999999999999884 246899999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++.+
T Consensus 83 ~a~~ 86 (97)
T 1x5p_A 83 IARK 86 (97)
T ss_dssp CCSS
T ss_pred ECCC
Confidence 9865
No 167
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.78 E-value=5.5e-19 Score=100.87 Aligned_cols=74 Identities=24% Similarity=0.390 Sum_probs=65.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeE-----E
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN-----I 98 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~-----l 98 (106)
...++|||+|||+++++++|+++|+.||.|..+.++.+ |||||+|.+.++|++|++.|++..+.|++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45789999999999999999999999999999998654 79999999999999999999999999988 7
Q ss_pred EEEecc
Q 034017 99 RVNYAH 104 (106)
Q Consensus 99 ~v~~a~ 104 (106)
+|..+.
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 777654
No 168
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.78 E-value=1.5e-18 Score=94.98 Aligned_cols=75 Identities=25% Similarity=0.459 Sum_probs=62.0
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCe--eeCCeEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL--LLDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~--~~~~~~l~ 99 (106)
.+....+|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++ +++. .+.|++|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 4456789999999999999999999999999999998764 67999999999999984 3444 46799999
Q ss_pred EEeccc
Q 034017 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|.++.+
T Consensus 78 v~~a~~ 83 (89)
T 3d2w_A 78 ISNAEP 83 (89)
T ss_dssp EEECC-
T ss_pred EEEcCC
Confidence 999865
No 169
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=94.66 Aligned_cols=70 Identities=23% Similarity=0.378 Sum_probs=62.7
Q ss_pred CceEEEcCCCCCCcHHH----HHHHhcccC-CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 26 RTKLFIGGLSYDTNETV----LKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
.+.|||+|||+.+++++ |+++|+.|| +|..+ ++ |+|||.|.+.++|++|++.|+|..+.|++|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 34499999999999887 558999995 99888 33 89999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
++|+.
T Consensus 79 ~~A~~ 83 (96)
T 2diu_A 79 SFTPK 83 (96)
T ss_dssp ESSCC
T ss_pred EecCC
Confidence 99865
No 170
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.78 E-value=4.9e-18 Score=104.74 Aligned_cols=77 Identities=16% Similarity=0.289 Sum_probs=71.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
.++|||+|||+++++++|+++|+.||.|..+.+.++. ++..+|||||+|.+.++|++|+..+ +..+.|+.|.|.+++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 5899999999999999999999999999999999886 6889999999999999999999865 568999999999875
No 171
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.78 E-value=2.7e-18 Score=106.77 Aligned_cols=75 Identities=21% Similarity=0.302 Sum_probs=69.8
Q ss_pred CCceEEEcCCC-CCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 25 SRTKLFIGGLS-YDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
..++|||+||| ..+++++|+++|+.||.|..+.++.+ .+|+|||+|.+.++|++|++.||+..+.|+.|+|.+|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46789999999 89999999999999999999999764 2689999999999999999999999999999999998
Q ss_pred c
Q 034017 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
+
T Consensus 78 ~ 78 (205)
T 3tyt_A 78 K 78 (205)
T ss_dssp S
T ss_pred c
Confidence 5
No 172
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.78 E-value=5.8e-18 Score=109.20 Aligned_cols=83 Identities=22% Similarity=0.355 Sum_probs=77.2
Q ss_pred CCCCCceEEEcCCCCCC-cHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 22 DANSRTKLFIGGLSYDT-NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
.....++|||+|||.++ ++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|+..|++..++|++|+|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 34567899999999995 999999999999999999998887 7889999999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.++.+
T Consensus 259 ~~a~~ 263 (284)
T 3smz_A 259 SFCAP 263 (284)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 99875
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.77 E-value=3.8e-18 Score=102.73 Aligned_cols=80 Identities=30% Similarity=0.441 Sum_probs=72.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCC--CeeeEEEEEecCHHHHHHHHHHhCCeeeC---CeEEE
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTG--QSRGYGFVKFASEAAAGEAIKEMDGLLLD---GRNIR 99 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~al~~l~~~~~~---~~~l~ 99 (106)
..++|||+|||+++++++|+++|+.||.|..+.++++..++ .++|||||+|.+.++|++|+..+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999998776 78999999999999999999999998765 56777
Q ss_pred EEecc
Q 034017 100 VNYAH 104 (106)
Q Consensus 100 v~~a~ 104 (106)
+.++.
T Consensus 82 ~~~~~ 86 (175)
T 3nmr_A 82 MKPAD 86 (175)
T ss_dssp EEECG
T ss_pred Ecccc
Confidence 77764
No 174
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=98.15 Aligned_cols=76 Identities=14% Similarity=0.312 Sum_probs=67.4
Q ss_pred CCCCceEEE--cCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeee-----CC
Q 034017 23 ANSRTKLFI--GGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL-----DG 95 (106)
Q Consensus 23 ~~~~~~l~v--~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~-----~~ 95 (106)
....++||| +||++++++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|++.|||..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345678999 77999999999999999999999987753 258999999999999999999999988 68
Q ss_pred eEEEEEecc
Q 034017 96 RNIRVNYAH 104 (106)
Q Consensus 96 ~~l~v~~a~ 104 (106)
+.|.|.++.
T Consensus 96 ~~l~v~~a~ 104 (114)
T 2cq2_A 96 ITLYLNFVE 104 (114)
T ss_dssp EECEEEEES
T ss_pred cEEEEEecc
Confidence 899999875
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.77 E-value=6.6e-18 Score=108.85 Aligned_cols=81 Identities=26% Similarity=0.498 Sum_probs=73.7
Q ss_pred CCCCCceEEEcCCCCCCcHHHHH----HHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 97 (106)
.....++|||+|||.++++++|+ ++|+.||.|..+.+.. ++..+|||||+|.+.++|++|+..|++..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34567899999999999999977 8999999999998865 6778999999999999999999999999999999
Q ss_pred EEEEeccc
Q 034017 98 IRVNYAHK 105 (106)
Q Consensus 98 l~v~~a~~ 105 (106)
|+|.+++.
T Consensus 82 l~v~~a~~ 89 (282)
T 3pgw_A 82 MRIQYAKT 89 (282)
T ss_pred EEEEEecc
Confidence 99999864
No 176
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.77 E-value=3.5e-18 Score=92.73 Aligned_cols=72 Identities=22% Similarity=0.630 Sum_probs=65.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhccc----C-------CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCee
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQH----G-------EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
...++|||+|||.++++++|+++|+.| | .|..+.+..+ +|||||+|.+.++|++|+ .|++..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 356899999999999999999999999 8 8999888654 589999999999999999 899999
Q ss_pred eCCeEEEEEe
Q 034017 93 LDGRNIRVNY 102 (106)
Q Consensus 93 ~~~~~l~v~~ 102 (106)
+.|++|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 177
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.2e-18 Score=97.50 Aligned_cols=64 Identities=25% Similarity=0.481 Sum_probs=58.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCC---CCeeeEEEEEecCHHHHHHHHHHh
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVT---GQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
...++|||+|||+++++++|+++|+.||.|. +.++.+..+ |..+|||||+|.+.++|++|++.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 4578899999999999999999999999999 777777655 688999999999999999999987
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.76 E-value=4.6e-18 Score=102.66 Aligned_cols=77 Identities=31% Similarity=0.533 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||.++++++|+++|+.||.|..+ ..++..+|+|||+|.+.++|.+|+..|++..++|++|+|+||
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 456899999999999999999999999988766 447888999999999999999999999999999999999999
Q ss_pred cc
Q 034017 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 172 ~~ 173 (175)
T 1fje_B 172 GE 173 (175)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 179
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.76 E-value=2.2e-17 Score=106.51 Aligned_cols=82 Identities=21% Similarity=0.391 Sum_probs=77.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|+..+++..++|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35679999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cc
Q 034017 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 173 ~~ 174 (284)
T 3smz_A 173 DA 174 (284)
T ss_dssp CG
T ss_pred CC
Confidence 64
No 180
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.76 E-value=3.2e-18 Score=102.49 Aligned_cols=79 Identities=38% Similarity=0.722 Sum_probs=72.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|++|+.. +..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 357899999999999999999999999999999999988899999999999999999999984 678999999988875
Q ss_pred c
Q 034017 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 3
No 181
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.75 E-value=2e-17 Score=93.00 Aligned_cols=82 Identities=12% Similarity=0.178 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCC-----CCcHHHHHHHhcccCCeeEEEEeecCCC-CCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeE
Q 034017 24 NSRTKLFIGGLSY-----DTNETVLKDAFGQHGEIIEVKVICDRVT-GQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 24 ~~~~~l~v~~lp~-----~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 97 (106)
...++|+|.|+.. +-.+++|++.|++||.|..+.+..++.+ +.++|++||+|.+.++|++|+..|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3467899999963 2368999999999999999999887643 578999999999999999999999999999999
Q ss_pred EEEEeccc
Q 034017 98 IRVNYAHK 105 (106)
Q Consensus 98 l~v~~a~~ 105 (106)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 182
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.75 E-value=7.8e-18 Score=96.89 Aligned_cols=77 Identities=27% Similarity=0.511 Sum_probs=68.6
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
..+...++|||+|+ ++++++|+++|+.||.|..+.+. ..+|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999995 79999999999999999999885 34689999999999999999999999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.++.+
T Consensus 106 ~~a~~ 110 (121)
T 2bz2_A 106 NIARK 110 (121)
T ss_dssp EECCS
T ss_pred EEeCC
Confidence 99865
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.75 E-value=1.1e-17 Score=108.36 Aligned_cols=83 Identities=24% Similarity=0.414 Sum_probs=75.0
Q ss_pred CCCCCceEEEcCCCCC-CcHHHHHHHhcccCCeeEEEEeecCC-CCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 034017 22 DANSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRV-TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
.....++|||+|||.. +++++|+++|+.||.|..+.++.+.. ++..+|+|||+|.+.++|.+|+ .|++..++|++|+
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3445789999999999 99999999999999999999988774 4889999999999999999999 9999999999999
Q ss_pred EEeccc
Q 034017 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|.||.+
T Consensus 285 V~~a~~ 290 (292)
T 2ghp_A 285 VSLADK 290 (292)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 999975
No 184
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-18 Score=92.89 Aligned_cols=74 Identities=24% Similarity=0.473 Sum_probs=64.2
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.++.+ .+|||||+|.+.++|+++.. ..+.+.|++|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 4689999999999999999999999999999988754 57899999999999986544 2455799999999986
Q ss_pred c
Q 034017 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 77 ~ 77 (88)
T 1wf0_A 77 P 77 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.74 E-value=1.3e-17 Score=105.04 Aligned_cols=80 Identities=21% Similarity=0.384 Sum_probs=73.0
Q ss_pred cCCCCCceEEEcCCCC-CCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 034017 21 SDANSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
......++|||+|||. ++++++|+++|+.||.|..+.+..++ +|||||+|.+.++|++|++.+++..+.|+.|+
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3445678999999999 99999999999999999999998764 67999999999999999999999999999999
Q ss_pred EEeccc
Q 034017 100 VNYAHK 105 (106)
Q Consensus 100 v~~a~~ 105 (106)
|.++.+
T Consensus 104 v~~a~~ 109 (229)
T 2adc_A 104 ITLSKH 109 (229)
T ss_dssp EECCSC
T ss_pred EEEecC
Confidence 999863
No 186
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.74 E-value=8.4e-18 Score=106.51 Aligned_cols=78 Identities=27% Similarity=0.480 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCC---------cHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeee
Q 034017 23 ANSRTKLFIGGLSYDT---------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 93 (106)
....++|||+|||..+ ++++|+++|+.||.|..+.++.. +|||||.|.+.++|+.|+..|++..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3457899999999998 79999999999999999999753 58999999999999999999999999
Q ss_pred ------------CCeEEEEEecccC
Q 034017 94 ------------DGRNIRVNYAHKD 106 (106)
Q Consensus 94 ------------~~~~l~v~~a~~~ 106 (106)
.|+.|.|.||+.|
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999999754
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.74 E-value=3.7e-17 Score=105.32 Aligned_cols=77 Identities=29% Similarity=0.496 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeC-CeEEEEEe
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD-GRNIRVNY 102 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~-~~~l~v~~ 102 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..++ +|+|||+|.+.++|.+|+..|++..+. |+.|+|.|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 356889999999999999999999999999999998543 479999999999999999999999999 99999999
Q ss_pred ccc
Q 034017 103 AHK 105 (106)
Q Consensus 103 a~~ 105 (106)
|++
T Consensus 280 akk 282 (282)
T 3pgw_A 280 AKK 282 (282)
T ss_pred ecC
Confidence 975
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=102.43 Aligned_cols=75 Identities=23% Similarity=0.418 Sum_probs=69.9
Q ss_pred CceEEEcCCCC-CCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 26 RTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 26 ~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
.++|||+|||. ++++++|+++|+.||.|..+.+..++ +|||||+|.+.++|++|+..|++..+.|+.|+|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57899999999 99999999999999999999987764 6799999999999999999999999999999999986
Q ss_pred c
Q 034017 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 78 ~ 78 (198)
T 1qm9_A 78 H 78 (198)
T ss_dssp C
T ss_pred C
Confidence 4
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.71 E-value=4.5e-18 Score=102.72 Aligned_cols=83 Identities=27% Similarity=0.435 Sum_probs=70.9
Q ss_pred cCCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEE
Q 034017 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v 100 (106)
..+...++|||+|||.++++++|+++|+.+|.+..+ ++.+..++..+|||||+|.+.++|++|++ +++..+.|++|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 355678999999999999999999999999876552 33333467788999999999999999995 9999999999999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.++.+
T Consensus 86 ~~~~~ 90 (175)
T 1fje_B 86 EKPKG 90 (175)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99864
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.70 E-value=1.3e-16 Score=102.13 Aligned_cols=78 Identities=36% Similarity=0.603 Sum_probs=70.9
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
.....++|||+|||+++++++|+++|+.||.|..+.+.++ +|||||+|.+.++|++|+..+++..+.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3445689999999999999999999999999999988643 5899999999999999999999999999999999
Q ss_pred eccc
Q 034017 102 YAHK 105 (106)
Q Consensus 102 ~a~~ 105 (106)
++.+
T Consensus 92 ~a~~ 95 (261)
T 3sde_A 92 FATH 95 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9864
No 191
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.69 E-value=3.7e-16 Score=98.29 Aligned_cols=76 Identities=18% Similarity=0.319 Sum_probs=70.2
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccC-CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeC-CeEEEEEe
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD-GRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~-~~~l~v~~ 102 (106)
..++|||+|||..+++++|+++|+.|| .|..+.+... .+|+|||+|.+.++|.+|+..|++..+. |++|+|.|
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 468999999999999999999999999 9999998653 2579999999999999999999999999 99999999
Q ss_pred ccc
Q 034017 103 AHK 105 (106)
Q Consensus 103 a~~ 105 (106)
+++
T Consensus 225 a~~ 227 (229)
T 2adc_A 225 SKS 227 (229)
T ss_dssp CSS
T ss_pred ecC
Confidence 976
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.69 E-value=1.4e-16 Score=103.06 Aligned_cols=80 Identities=13% Similarity=0.323 Sum_probs=70.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccC-CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEec
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a 103 (106)
..++|||+|||..+++++|+++|+.|| .|..+.++.+. .+..+|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 99999998877 4778999999999999999999999999999999999998
Q ss_pred cc
Q 034017 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 195 ~~ 196 (292)
T 2ghp_A 195 NP 196 (292)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=97.62 Aligned_cols=76 Identities=18% Similarity=0.316 Sum_probs=70.3
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccC-CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeC-CeEEEEEe
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD-GRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~-~~~l~v~~ 102 (106)
..++|||+|||..+++++|+++|+.|| .|..+.+..+. +|+|||+|.+.++|.+|+..|++..++ |++|+|.|
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 478999999999999999999999999 99999886532 579999999999999999999999999 99999999
Q ss_pred ccc
Q 034017 103 AHK 105 (106)
Q Consensus 103 a~~ 105 (106)
+++
T Consensus 194 a~~ 196 (198)
T 1qm9_A 194 SKS 196 (198)
T ss_dssp ECC
T ss_pred ecc
Confidence 976
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.3e-16 Score=87.41 Aligned_cols=80 Identities=20% Similarity=0.290 Sum_probs=67.9
Q ss_pred CCCCCceEEEcCCCCCCc-----------HHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCC
Q 034017 22 DANSRTKLFIGGLSYDTN-----------ETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG 90 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~ 90 (106)
.+...++|+|.|+..... +++|+++|++||.|..+.+ .+. ..+|+|||+|.+.++|++|+..|++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445678899999944432 5799999999999999955 443 2689999999999999999999999
Q ss_pred eeeCCeEEEEEeccc
Q 034017 91 LLLDGRNIRVNYAHK 105 (106)
Q Consensus 91 ~~~~~~~l~v~~a~~ 105 (106)
..++|++|+|.++.+
T Consensus 87 ~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 87 RWFGGRQITAQAWDG 101 (112)
T ss_dssp CEETTEECEEEECCS
T ss_pred CEECCcEEEEEEeCC
Confidence 999999999999865
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.67 E-value=6.5e-16 Score=98.89 Aligned_cols=80 Identities=30% Similarity=0.468 Sum_probs=72.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHh-CCeeeC---CeEEEE
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM-DGLLLD---GRNIRV 100 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l-~~~~~~---~~~l~v 100 (106)
...+|||+|||..+++++|+++|+.||.|..+.++.+. +|.++|+|||+|.+.++|.+|+..| ++..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 46789999999999999999999999999999999985 8999999999999999999999999 444444 899999
Q ss_pred Eeccc
Q 034017 101 NYAHK 105 (106)
Q Consensus 101 ~~a~~ 105 (106)
.++.+
T Consensus 174 ~~~~~ 178 (261)
T 3sde_A 174 EPMEQ 178 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98753
No 196
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.67 E-value=6.6e-17 Score=90.77 Aligned_cols=72 Identities=21% Similarity=0.387 Sum_probs=63.9
Q ss_pred EcCCCCCCcHHHHHHHh------------cccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEE
Q 034017 31 IGGLSYDTNETVLKDAF------------GQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 31 v~~lp~~~~~~~l~~~f------------~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l 98 (106)
+.+||+.+++++|++.| ++||.|..+.+.++. ++.++|+|||+|.+.++|++|+..|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777778887777666 999999999998876 57889999999999999999999999999999999
Q ss_pred EEEec
Q 034017 99 RVNYA 103 (106)
Q Consensus 99 ~v~~a 103 (106)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=2.7e-16 Score=97.77 Aligned_cols=77 Identities=13% Similarity=0.192 Sum_probs=67.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCe--eEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCe----EE
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEI--IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR----NI 98 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~----~l 98 (106)
..++|||+|||+++++++|+++|++||.| ..+.+..+. +..+|+|||+|.+.++|.+|+..||+..+.|. ++
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 35689999999999999999999999998 888887764 44569999999999999999999999999876 56
Q ss_pred EEEec
Q 034017 99 RVNYA 103 (106)
Q Consensus 99 ~v~~a 103 (106)
.|++|
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66664
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.65 E-value=9e-16 Score=92.18 Aligned_cols=74 Identities=22% Similarity=0.623 Sum_probs=65.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhccc----C-------CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeee
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQH----G-------EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 93 (106)
..++|||+|||.++++++|+++|+.| | .|..+.+.. .+|||||+|.+.++|++|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46789999999999999999999999 6 667676643 3589999999999999999 7999999
Q ss_pred CCeEEEEEeccc
Q 034017 94 DGRNIRVNYAHK 105 (106)
Q Consensus 94 ~~~~l~v~~a~~ 105 (106)
.|++|+|.++.+
T Consensus 76 ~g~~i~v~~~~~ 87 (172)
T 2g4b_A 76 QGQSLKIRRPHD 87 (172)
T ss_dssp TTEECEEECCSS
T ss_pred cCceeeecCCcc
Confidence 999999998754
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.65 E-value=7.6e-16 Score=86.56 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=68.2
Q ss_pred CCceEEEcCC--CCCCc--------HHHHHHHhcccCCeeEEEEeecCCC--CCeeeEEEEEecCHHHHHHHHHHhCCee
Q 034017 25 SRTKLFIGGL--SYDTN--------ETVLKDAFGQHGEIIEVKVICDRVT--GQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 25 ~~~~l~v~~l--p~~~~--------~~~l~~~f~~~g~i~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
..+.|.+.|+ |.+.. +++|++.|++||.|..+.++++..+ +.++|++||+|.+.++|++|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3567788887 33433 3689999999999999999887643 3568999999999999999999999999
Q ss_pred eCCeEEEEEeccc
Q 034017 93 LDGRNIRVNYAHK 105 (106)
Q Consensus 93 ~~~~~l~v~~a~~ 105 (106)
++|+.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998753
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.64 E-value=1.2e-15 Score=93.40 Aligned_cols=74 Identities=22% Similarity=0.630 Sum_probs=64.3
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhccc----C-------CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeee
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQH----G-------EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 93 (106)
..++|||+|||+++++++|+++|+.| | .|..+.+. ..+|||||+|.+.++|++|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 55655553 34689999999999999999 7999999
Q ss_pred CCeEEEEEeccc
Q 034017 94 DGRNIRVNYAHK 105 (106)
Q Consensus 94 ~~~~l~v~~a~~ 105 (106)
.|++|+|.++.+
T Consensus 76 ~g~~i~v~~~~~ 87 (198)
T 2yh0_A 76 QGQSLKIRRPHD 87 (198)
T ss_dssp TTEEEEEECCCC
T ss_pred cCceEEEeCCCC
Confidence 999999998753
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.62 E-value=4.9e-15 Score=84.82 Aligned_cols=80 Identities=18% Similarity=0.285 Sum_probs=69.0
Q ss_pred CCceEEEcCCCC--CC---cHHHHHHHhcccCCeeEEEEeecCC----CCCeeeEEEEEecCHHHHHHHHHHhCCeeeCC
Q 034017 25 SRTKLFIGGLSY--DT---NETVLKDAFGQHGEIIEVKVICDRV----TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG 95 (106)
Q Consensus 25 ~~~~l~v~~lp~--~~---~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~ 95 (106)
..+.|++.|+-. ++ -+++|++.|++||.|..+.+..+.. ++..+|++||+|.+.++|++|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467889998842 22 3689999999999999999988754 35678999999999999999999999999999
Q ss_pred eEEEEEecc
Q 034017 96 RNIRVNYAH 104 (106)
Q Consensus 96 ~~l~v~~a~ 104 (106)
+.|+|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999875
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=9.7e-14 Score=77.24 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=60.5
Q ss_pred CceEEEcCCC-------CCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEE
Q 034017 26 RTKLFIGGLS-------YDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 26 ~~~l~v~~lp-------~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l 98 (106)
..+|.|.-.+ ..+++++|+++|++||.|..+.++ +..+|||||+|.+.++|+.|+..++ .+.++.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 4566665443 458999999999999999999886 3468999999999999999999744 4679999
Q ss_pred EEEeccc
Q 034017 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~a~~ 105 (106)
+|+|+++
T Consensus 83 ~V~~a~~ 89 (100)
T 2d9o_A 83 KISWLEG 89 (100)
T ss_dssp EEECSSC
T ss_pred EEEEccC
Confidence 9999864
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.54 E-value=3e-14 Score=94.43 Aligned_cols=77 Identities=13% Similarity=0.276 Sum_probs=64.2
Q ss_pred CCCCCceEEEcC--CCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeC---Ce
Q 034017 22 DANSRTKLFIGG--LSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD---GR 96 (106)
Q Consensus 22 ~~~~~~~l~v~~--lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~---~~ 96 (106)
......+|||+| |+..+++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|++.|||..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 345577999998 578999999999999999999876643 3689999999999999999999999872 34
Q ss_pred --EEEEEecc
Q 034017 97 --NIRVNYAH 104 (106)
Q Consensus 97 --~l~v~~a~ 104 (106)
.+.+.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 57777653
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.50 E-value=2.7e-13 Score=77.07 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=63.2
Q ss_pred CCCceEEEcCCCCCC----------cHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeee
Q 034017 24 NSRTKLFIGGLSYDT----------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~----------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 93 (106)
...+.|.+.|+-..- -+++|++.|++||.|..+.+.++. .+|++||+|.+.++|++|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 345667777663321 136889999999999999886543 478999999999999999999999999
Q ss_pred CCeEEEEEecc
Q 034017 94 DGRNIRVNYAH 104 (106)
Q Consensus 94 ~~~~l~v~~a~ 104 (106)
+|+.|+|.++.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999975
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=2.4e-12 Score=69.82 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=60.6
Q ss_pred CceEEEcCCC----CCCcH----HHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeE
Q 034017 26 RTKLFIGGLS----YDTNE----TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 26 ~~~l~v~~lp----~~~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 97 (106)
.-+|.|.-.| .+... .+|.+.|+.||.|..+++..+. +||+|.+.++|.+|++ |+|..+.|+.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 4466676555 22333 6799999999999999998764 8999999999999999 9999999999
Q ss_pred EEEEecccC
Q 034017 98 IRVNYAHKD 106 (106)
Q Consensus 98 l~v~~a~~~ 106 (106)
|+|+++.+|
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999999876
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=3.7e-12 Score=72.89 Aligned_cols=78 Identities=21% Similarity=0.198 Sum_probs=67.5
Q ss_pred cCCCCCceEEEcCCCCC-CcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecC-HHHHHHHHHHh--CCeeeCCe
Q 034017 21 SDANSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFAS-EAAAGEAIKEM--DGLLLDGR 96 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~al~~l--~~~~~~~~ 96 (106)
..-.....|+|+||+.+ ++.++|+++|+.||+|..+.+..+.. .|||.|.+ ..+|..|+..+ .+..|.|.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 34456889999999999 99999999999999999999987763 59999999 89999999988 47778888
Q ss_pred EEEEEecc
Q 034017 97 NIRVNYAH 104 (106)
Q Consensus 97 ~l~v~~a~ 104 (106)
.++++...
T Consensus 87 ~~~~evL~ 94 (121)
T 1owx_A 87 EVTWEVLE 94 (121)
T ss_dssp SEEEEECC
T ss_pred EEEEEECC
Confidence 88887643
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.22 E-value=4.5e-11 Score=74.72 Aligned_cols=66 Identities=18% Similarity=0.300 Sum_probs=59.2
Q ss_pred cHHHHHHHhcccCCeeEEEEeecCC----CCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEEecc
Q 034017 39 NETVLKDAFGQHGEIIEVKVICDRV----TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 39 ~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~~a~ 104 (106)
.++++++.|++||.|..+.+..+.. ++..+|++||+|.+.++|++|++.|+|..++|+.|++.++.
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4678999999999999999975543 34789999999999999999999999999999999999874
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=1.9e-10 Score=62.72 Aligned_cols=71 Identities=21% Similarity=0.329 Sum_probs=59.6
Q ss_pred CceEEEcCCCCC-----CcH----HHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCe
Q 034017 26 RTKLFIGGLSYD-----TNE----TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR 96 (106)
Q Consensus 26 ~~~l~v~~lp~~-----~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~ 96 (106)
.-||.|.-++.. +.. .+|.+.|+.||.+..+++..++ +||+|.+.++|.+|++ |+|..+.|+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 457888777632 222 6699999999999999998764 9999999999999998 999999999
Q ss_pred EEEEEeccc
Q 034017 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~l~v~~a~~ 105 (106)
.|+|++-.+
T Consensus 86 ~L~V~~k~~ 94 (95)
T 1ufw_A 86 AVKISGPSS 94 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEeccCC
Confidence 999998654
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.04 E-value=3.8e-09 Score=58.85 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=65.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhccc-----CCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeE
Q 034017 23 ANSRTKLFIGGLSYDTNETVLKDAFGQH-----GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 97 (106)
....+++-+=+||..++...|+.+.+++ |.+..+.+..+- +-|+|+|.+...|-+|.-.|+|.++.|++
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3457788888999999999999999999 999999887765 47999999999999999889999999999
Q ss_pred EEEE
Q 034017 98 IRVN 101 (106)
Q Consensus 98 l~v~ 101 (106)
|++.
T Consensus 92 Lr~g 95 (117)
T 2l9w_A 92 IRSG 95 (117)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9975
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.38 E-value=3.2e-06 Score=46.16 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=48.6
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHh
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
.+...+.+++ ++|+++...||.+.|+.|| -..|.++.+- .|||.|.+++.|..|+..+
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3445666777 9999999999999999999 4557777775 7999999999999999865
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=4.3e-05 Score=42.14 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=56.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHhcc---c--CCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEE
Q 034017 24 NSRTKLFIGGLSYDTNETVLKDAFGQ---H--GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~---~--g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l 98 (106)
....+|.|.|||..+.++.|.-+|+. - |.|..+.... +-|+|.|.+...+++.|+. ..+.+.+..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 45678999999999999999999986 2 4677776643 3699999999999999983 3667888877
Q ss_pred EEEe
Q 034017 99 RVNY 102 (106)
Q Consensus 99 ~v~~ 102 (106)
.|..
T Consensus 77 sV~P 80 (104)
T 2dhx_A 77 SLRP 80 (104)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7754
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.21 E-value=1.4e-05 Score=43.30 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=55.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCC--eeeEEEEEecCHHHHHHHHHHhCCeee
Q 034017 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ--SRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~~fv~f~~~~~a~~al~~l~~~~~ 93 (106)
.+|-|++||+.++++++.+.++....+........+.+.+ ..+-|||.|.+.+++....+.++|..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 4688999999999999999999988776666666553332 345699999999999999999999975
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.14 E-value=1.6e-05 Score=43.97 Aligned_cols=74 Identities=11% Similarity=0.106 Sum_probs=61.6
Q ss_pred CCceEEEcCCCCCCc-----HHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEE
Q 034017 25 SRTKLFIGGLSYDTN-----ETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~-----~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~ 99 (106)
.+.+|++.||+.++- ...++..|..|+++....++.... =..|.|.+.++|.+|-..||+..+.|++++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 467899999988762 257899999999887777766541 367999999999999999999999999999
Q ss_pred EEecc
Q 034017 100 VNYAH 104 (106)
Q Consensus 100 v~~a~ 104 (106)
|.++.
T Consensus 78 ~YFgq 82 (104)
T 1wey_A 78 LYFAQ 82 (104)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 98875
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=98.12 E-value=6.3e-06 Score=45.11 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=46.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhC
Q 034017 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD 89 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~ 89 (106)
.+.+++ ++|+++...+|.+.|++|| -..|.++.+- .|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 345666 9999999999999999999 6667888775 79999999999999998663
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.94 E-value=0.0001 Score=41.75 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=57.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCC-eEEEEE
Q 034017 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG-RNIRVN 101 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~-~~l~v~ 101 (106)
....+-|.|-++|... ...+.+.|+.||.|.+.... + ...+-.|.|.+..+|++||. .||..+++ -.|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 3457788899999996 57788999999999887651 1 23589999999999999998 59999875 555555
Q ss_pred e
Q 034017 102 Y 102 (106)
Q Consensus 102 ~ 102 (106)
.
T Consensus 93 p 93 (119)
T 1wwh_A 93 P 93 (119)
T ss_dssp E
T ss_pred E
Confidence 4
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.86 E-value=8.2e-05 Score=40.64 Aligned_cols=78 Identities=10% Similarity=0.074 Sum_probs=54.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCC--eeeEEEEEecCHHHHHHHHHHhCCeeeCC-----eEE
Q 034017 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ--SRGYGFVKFASEAAAGEAIKEMDGLLLDG-----RNI 98 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~~fv~f~~~~~a~~al~~l~~~~~~~-----~~l 98 (106)
.-+|-|+.||+.+|++++.+.++..-.+..........+.+ ..+-|||.|.+.++.....+.++|..+-+ .+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 45688999999999999988888765543333332222221 23458999999999999999999998532 245
Q ss_pred EEEec
Q 034017 99 RVNYA 103 (106)
Q Consensus 99 ~v~~a 103 (106)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 55554
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.37 E-value=0.00066 Score=39.01 Aligned_cols=78 Identities=15% Similarity=0.245 Sum_probs=54.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeE-EEEeec--------CCCC-----CeeeEEEEEecCHHHHHHHHHHhCC
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICD--------RVTG-----QSRGYGFVKFASEAAAGEAIKEMDG 90 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~--------~~~~-----~~~g~~fv~f~~~~~a~~al~~l~~ 90 (106)
....|.|-+.|.+.+ ..+.+.|+++|.|.+ ...... .... ...++-.|.|.+..+|.+||+ .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 456678889988765 557788999999865 211110 0001 134578999999999999999 599
Q ss_pred eeeCCeEEEEEecc
Q 034017 91 LLLDGRNIRVNYAH 104 (106)
Q Consensus 91 ~~~~~~~l~v~~a~ 104 (106)
..++|.-|-|....
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999887777654
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.99 E-value=0.00059 Score=47.04 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=42.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHH
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 87 (106)
..+.|+|. .|...++.+|.++|+.||+|..+-...+. | .|+.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 45889997 79999999999999999999988665432 2 6999999999999977753
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.65 E-value=0.00078 Score=39.20 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=36.2
Q ss_pred CCCeeeEEEEEecCHHHHHHHHHHh-CCeeeCCeEEEEEeccc
Q 034017 64 TGQSRGYGFVKFASEAAAGEAIKEM-DGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 64 ~~~~~g~~fv~f~~~~~a~~al~~l-~~~~~~~~~l~v~~a~~ 105 (106)
....+|+++++|.+.++|++|+..+ ++..++| .+.+.++.+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4456899999999999999999999 9999999 999988753
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.25 E-value=0.0061 Score=35.53 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=25.8
Q ss_pred EEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCC
Q 034017 56 VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG 90 (106)
Q Consensus 56 ~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~ 90 (106)
+.+.++. +..+||+||+|.+.++|++|++.+++
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhcc
Confidence 3444443 35789999999999999999987654
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.79 E-value=0.063 Score=37.49 Aligned_cols=56 Identities=18% Similarity=0.260 Sum_probs=45.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhC
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD 89 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~ 89 (106)
..+.++|+ +|..+...+|.+.|+.||. ..+.++.+. .+||.|.+.+.+..++..+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 35666665 9999999999999999995 455565443 69999999999999999874
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=65.62 E-value=11 Score=18.74 Aligned_cols=68 Identities=16% Similarity=0.300 Sum_probs=38.8
Q ss_pred eEEEc-CCCCCCcHHHHHHHhcccC-----CeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCeeeCCeEEEEE
Q 034017 28 KLFIG-GLSYDTNETVLKDAFGQHG-----EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 28 ~l~v~-~lp~~~~~~~l~~~f~~~g-----~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~l~v~ 101 (106)
++++. +-...+...+|..++..-+ .|-.+.+.. .|.||+..... +..++..|.+..+.|+++.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNGK-GPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTTC-HHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHHH-HHHHHHHhccccCcCceEEEE
Confidence 45553 2233456677777776433 245555532 26888776544 456777788889999999988
Q ss_pred ecc
Q 034017 102 YAH 104 (106)
Q Consensus 102 ~a~ 104 (106)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 765
No 223
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=37.80 E-value=38 Score=17.67 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.1
Q ss_pred eeeEEEEEecCHHHHHHHHHHhCCee
Q 034017 67 SRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 67 ~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
..||.||++....+...+++...+..
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCce
Confidence 67999999999999888888777664
No 224
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=34.09 E-value=86 Score=22.63 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=39.1
Q ss_pred CCCCCCcHHHHHHHhc----ccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHh
Q 034017 33 GLSYDTNETVLKDAFG----QHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 33 ~lp~~~~~~~l~~~f~----~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
..+.+.+..+|.++|- .+|-|+++.+...+ -.....+.++.|.+.+++..++..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHH
Confidence 4456666677888883 35678888775554 3445668899999999988887654
No 225
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=33.64 E-value=32 Score=18.68 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.3
Q ss_pred eeeEEEEEecCHHHHHHHHHHhCCe
Q 034017 67 SRGYGFVKFASEAAAGEAIKEMDGL 91 (106)
Q Consensus 67 ~~g~~fv~f~~~~~a~~al~~l~~~ 91 (106)
.+||-||+=.+..+...|++.+.+.
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 5799999999999999999866444
No 226
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=30.98 E-value=26 Score=13.69 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=9.8
Q ss_pred cHHHHHHHhccc
Q 034017 39 NETVLKDAFGQH 50 (106)
Q Consensus 39 ~~~~l~~~f~~~ 50 (106)
++.+|++|.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 678899988876
No 227
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=30.60 E-value=36 Score=21.66 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=25.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEee
Q 034017 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVIC 60 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~ 60 (106)
....|+|+|+.++..-|.+++.....+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4567899999999999999997544455544433
No 228
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=29.47 E-value=69 Score=17.04 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=42.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHh
Q 034017 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
..+-+-+-|+|..+-..++.-.....|---.|..+. |-+.|.|.+..+..-|++.|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 356677889999988877766666667555665543 35899999999999898865
No 229
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=29.37 E-value=64 Score=20.43 Aligned_cols=32 Identities=13% Similarity=0.346 Sum_probs=24.4
Q ss_pred CceEEEcCCCCCCcHHHHHHHhcccCCeeEEEE
Q 034017 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKV 58 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~ 58 (106)
...+.|+|+|+.++..-+.+++.. +.+....+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 346789999999999999999876 55554443
No 230
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=29.01 E-value=41 Score=18.07 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=23.8
Q ss_pred CCCcHHHHHHHhcc-cCCeeEEEEeec----CCCCCeeeEEEEEecCHHHHHH
Q 034017 36 YDTNETVLKDAFGQ-HGEIIEVKVICD----RVTGQSRGYGFVKFASEAAAGE 83 (106)
Q Consensus 36 ~~~~~~~l~~~f~~-~g~i~~~~~~~~----~~~~~~~g~~fv~f~~~~~a~~ 83 (106)
...+..++++-+.. |+.-..+-++.. .-.++..|||.| |.+.+.+.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 34567777777653 432122222222 123556677766 666666554
No 231
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=27.28 E-value=60 Score=19.85 Aligned_cols=27 Identities=4% Similarity=0.143 Sum_probs=23.3
Q ss_pred eeeEEEEEecCHHHHHHHHHHhCCeee
Q 034017 67 SRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 67 ~~g~~fv~f~~~~~a~~al~~l~~~~~ 93 (106)
-+||-||+=.+..+...|++.+.+...
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 578999999999999999998777643
No 232
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=27.11 E-value=80 Score=17.01 Aligned_cols=49 Identities=8% Similarity=0.245 Sum_probs=29.5
Q ss_pred CCCcHHHHHHHhcc-cC---CeeEE-EEeecCCCCCeeeEEEEEecCHHHHHHHH
Q 034017 36 YDTNETVLKDAFGQ-HG---EIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEAI 85 (106)
Q Consensus 36 ~~~~~~~l~~~f~~-~g---~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~al 85 (106)
...+..++++-+.. |+ ....+ .+....-.|+..|||.| |.+.+.+.+.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 45677777777764 43 23333 33333334667788877 88888776554
No 233
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=27.00 E-value=1.1e+02 Score=18.62 Aligned_cols=55 Identities=9% Similarity=0.169 Sum_probs=36.1
Q ss_pred cHHHHHHHhcccCCeeEEEEeecCCCCCeeeEEEEEecCHHHHHHHHHHhCCee------eCCe-EEEE
Q 034017 39 NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL------LDGR-NIRV 100 (106)
Q Consensus 39 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~------~~~~-~l~v 100 (106)
.+++|.+-...|.+.. +..+.-+---||++.+.......+..|.|+. ++|. +|..
T Consensus 66 ~~~~I~~Ei~aYnpLi-------P~~~~l~ATl~IE~~d~~er~~~L~~L~Gie~~v~l~v~~~~~V~a 127 (194)
T 3fjv_A 66 DEDGIQAELDAYLPLV-------PDGSNLKATLQIEYENETQRRAALARLVGIEDRVFLRVDDEAPVYA 127 (194)
T ss_dssp SHHHHHHHHHHHGGGC-------CCSSEEEEEEEECCSSHHHHHHHHHHTTTGGGSEEEEETTSCCEEC
T ss_pred CHHHHHHHHHHhcccC-------CCCCcEEEEEEEEcCCHHHHHHHHHHhcCccceEEEEECCcceeee
Confidence 4455555555554322 2233334568899999999999999998874 5665 4553
No 234
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=26.25 E-value=1.1e+02 Score=18.27 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=35.7
Q ss_pred eEEEcCCCCC---------CcHHHHHHHh--cccCCeeEEEEeecCCCCCeeeEEEEEecC-HHHHHHHHH
Q 034017 28 KLFIGGLSYD---------TNETVLKDAF--GQHGEIIEVKVICDRVTGQSRGYGFVKFAS-EAAAGEAIK 86 (106)
Q Consensus 28 ~l~v~~lp~~---------~~~~~l~~~f--~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~al~ 86 (106)
...|-|+|.. .+..+|++.| +.|.++. +..+..+ ..+.|++.|.|.+ -.-...|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 3556677762 3457899977 8898765 4344443 3477899999984 444444543
No 235
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=25.78 E-value=86 Score=16.94 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=28.3
Q ss_pred CCCcHHHHHHHhcc-cC---CeeEE-EEeecCCCCCeeeEEEEEecCHHHHHH
Q 034017 36 YDTNETVLKDAFGQ-HG---EIIEV-KVICDRVTGQSRGYGFVKFASEAAAGE 83 (106)
Q Consensus 36 ~~~~~~~l~~~f~~-~g---~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~ 83 (106)
...+..++++-+.. |+ ....+ .+....-.|+..|||.| |.+.+.+.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677777777764 33 23333 33333335667788877 788877654
No 236
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=25.06 E-value=63 Score=16.97 Aligned_cols=29 Identities=7% Similarity=0.036 Sum_probs=23.6
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhccc
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQH 50 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~ 50 (106)
.-..+..+.+.+.|..++.++..+++..|
T Consensus 15 ~lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 15 TLNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp -CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred ccCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 34556788999999999999999988876
No 237
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=24.37 E-value=14 Score=21.32 Aligned_cols=9 Identities=33% Similarity=1.025 Sum_probs=6.4
Q ss_pred eeEEEEEec
Q 034017 68 RGYGFVKFA 76 (106)
Q Consensus 68 ~g~~fv~f~ 76 (106)
+||+||.-.
T Consensus 21 kGfGFI~~~ 29 (148)
T 3ts2_A 21 MGFGFLSMT 29 (148)
T ss_dssp TTEEEEEEE
T ss_pred CCeeEEeeC
Confidence 468888765
No 238
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=29.92 E-value=16 Score=19.87 Aligned_cols=67 Identities=16% Similarity=0.077 Sum_probs=38.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHhcccCCeeEEEEeecCCCCCe-eeEEEEEecCHHHHHHHHHHhCCee
Q 034017 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQS-RGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
.+....+|-+... ...+++..|....+ +..+.+.....+|+. --.-+-.|.+.++|..|+..|....
T Consensus 21 ~p~~~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 21 APSSHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 3344556665443 33455666666665 233444332223322 2345578999999999999886543
No 239
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=23.82 E-value=98 Score=16.87 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=28.4
Q ss_pred CCCcHHHHHHHhcc-cC---CeeEE-EEeecCCCCCeeeEEEEEecCHHHHHHH
Q 034017 36 YDTNETVLKDAFGQ-HG---EIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEA 84 (106)
Q Consensus 36 ~~~~~~~l~~~f~~-~g---~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a 84 (106)
...+..++++-+.. |+ ....+ .+....-.|+..|||.| |.+.+.+.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 34567777777653 43 23333 33333334667788877 8888877654
No 240
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=22.83 E-value=1.1e+02 Score=18.97 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=19.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHhccc
Q 034017 27 TKLFIGGLSYDTNETVLKDAFGQH 50 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~ 50 (106)
..+.|+|+|+.++..-+.+++...
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~ 114 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYT 114 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTG
T ss_pred ceEEEECCCCCccHHHHHHHHhcC
Confidence 357789999999988888887643
No 241
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=22.22 E-value=1e+02 Score=17.45 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=21.6
Q ss_pred eeeEEEEEecCHHHHHHHHHHhCCee
Q 034017 67 SRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 67 ~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
..||-||+.....+...+++...+..
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~gV~ 67 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRHAR 67 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTTEE
T ss_pred CCcEEEEEEEchHHHHHHHhCCCCEE
Confidence 57899999999988888888776653
No 242
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=22.20 E-value=39 Score=21.16 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=23.3
Q ss_pred EEEcCCCCCCcHHHHHHHhcccCCeeEEEEe
Q 034017 29 LFIGGLSYDTNETVLKDAFGQHGEIIEVKVI 59 (106)
Q Consensus 29 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~ 59 (106)
..|+|+|+.++..-|.+++...+.+....++
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 4789999999999999999765555544443
No 243
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=20.83 E-value=92 Score=19.27 Aligned_cols=25 Identities=12% Similarity=0.352 Sum_probs=20.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHhcccC
Q 034017 27 TKLFIGGLSYDTNETVLKDAFGQHG 51 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g 51 (106)
..+.|+|+|..++..-+.+++....
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~ 120 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKD 120 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGG
T ss_pred CcEEEEECchhccHHHHHHHHhcCC
Confidence 3477899999999988888887543
Done!