BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034019
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DCG6|PBLD1_MOUSE Phenazine biosynthesis-like domain-containing protein 1 OS=Mus
musculus GN=Pbld1 PE=2 SV=2
Length = 288
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADS--PNPRFR 67
+ DAFT +AF+GNPAAVCLLE +E+ Q +A E N+S+T ++ +L DS + RF
Sbjct: 7 IADAFTATAFRGNPAAVCLLERTLEEDAHQQIAREMNLSETAFIRKLQPTDSFTQSSRFG 66
Query: 68 LRWFTPVAEV 77
LRWFTPV+EV
Sbjct: 67 LRWFTPVSEV 76
>sp|Q9KG32|Y283_BACHD Uncharacterized isomerase BH0283 OS=Bacillus halodurans (strain
ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 /
C-125) GN=BH0283 PE=3 SV=1
Length = 265
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 45/70 (64%), Gaps = 6/70 (8%)
Query: 10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLR 69
VVDAFT+ AFKGNPAAVC+L RD+ W+Q VASE N+S+T +L + LR
Sbjct: 8 VVDAFTNQAFKGNPAAVCVLPTSRDDIWMQHVASEMNLSETAFLHPYQDG------YSLR 61
Query: 70 WFTPVAEVSF 79
WFTP EV
Sbjct: 62 WFTPNTEVDL 71
>sp|Q9CXN7|PBLD2_MOUSE Phenazine biosynthesis-like domain-containing protein 2 OS=Mus
musculus GN=Pbld2 PE=2 SV=1
Length = 288
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD--SPNPRFR 67
+ DAFT +AF+GNPAAVCLLE DE+ Q +A E N+S+T ++ +L D + + RF
Sbjct: 7 IADAFTATAFRGNPAAVCLLERTLDEDAHQDIAREMNLSETAFVRKLQPTDDFTQSSRFG 66
Query: 68 LRWFTPVAE 76
LRWFTP AE
Sbjct: 67 LRWFTPEAE 75
>sp|P30039|PBLD_HUMAN Phenazine biosynthesis-like domain-containing protein OS=Homo
sapiens GN=PBLD PE=1 SV=2
Length = 288
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD--SPNPRFR 67
+ DAFT AF+GNPAAVCLLE + DE+ Q +A E N+S+T ++ +L D + + F
Sbjct: 7 IADAFTARAFRGNPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFAQSSCFG 66
Query: 68 LRWFTPVAEVSFSFY 82
LRWFTP +EV +
Sbjct: 67 LRWFTPASEVPLCGH 81
>sp|Q2HJF4|PBLD_BOVIN Phenazine biosynthesis-like domain-containing protein OS=Bos
taurus GN=PBLD PE=2 SV=1
Length = 288
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD--SPNPRFR 67
+ DAFT AF+GNPAAVCLLE DE+ Q +A E N+S+T ++ +L D + + F
Sbjct: 7 IADAFTTKAFRGNPAAVCLLENKLDEDLHQKIAKEMNLSETAFIRKLHPNDNFTQSSCFG 66
Query: 68 LRWFTPVAEVSFSFY 82
LRWFTP EV +
Sbjct: 67 LRWFTPQNEVPLCGH 81
>sp|Q5RDZ1|PBLD_PONAB Phenazine biosynthesis-like domain-containing protein OS=Pongo
abelii GN=PBLD PE=2 SV=1
Length = 288
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD--SPNPRFR 67
+ DAFT AF+G+PAAVCLLE + DE+ Q +A E N+S+T ++ +L D + + F
Sbjct: 7 IADAFTARAFRGDPAAVCLLENELDEDMHQKIAREMNLSETAFIRKLHPTDNFAQSSCFG 66
Query: 68 LRWFTPVAEVSFSFY 82
LRWFTP +EV +
Sbjct: 67 LRWFTPASEVPLCGH 81
>sp|Q68G31|PBLD_RAT Phenazine biosynthesis-like domain-containing protein OS=Rattus
norvegicus GN=Pbld PE=2 SV=1
Length = 288
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD--SPNPRFR 67
+ DAFT +AF GNPAAVCLLE E+ Q +A E N+S+T ++ +L D S + F
Sbjct: 7 IADAFTVTAFHGNPAAVCLLESILQEDAHQQIAREMNLSETAFIRKLQPTDSFSQSSCFG 66
Query: 68 LRWFTPVAEVSFSFY 82
LRWFTPV+EV +
Sbjct: 67 LRWFTPVSEVPLCGH 81
>sp|Q9I073|Y2770_PSEAE Uncharacterized isomerase PA2770 OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA2770
PE=3 SV=1
Length = 259
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 12/98 (12%)
Query: 11 VDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRW 70
VDAF DS F+GNPAAVC L+ D+E LQA+A E N+S+T ++ + +RLRW
Sbjct: 8 VDAFADSPFQGNPAAVCPLDAWLDDERLQAIAEENNLSETAFVV------GRDGDYRLRW 61
Query: 71 FTPVAEVSFSFYNY--KLWMKLFGSVLELDDLSFFMGF 106
FTP EV + W+ + +LDD S + F
Sbjct: 62 FTPQVEVDLCGHATLATAWVLIH----KLDDASPVLRF 95
>sp|Q9HY42|Y3578_PSEAE Uncharacterized isomerase PA3578 OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=PA3578 PE=3 SV=1
Length = 261
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 6 VQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPR 65
+++ VDAF+ F GNPA V L+ +E +Q +A+E N+S+T ++ R A
Sbjct: 3 LEFHQVDAFSSRPFSGNPAVVYRLDAWLADELMQMIATEHNLSETAFVVREGEA------ 56
Query: 66 FRLRWFTPVAEVSFSFY 82
+R+RWFTP EV+ +
Sbjct: 57 WRIRWFTPSVEVALCGH 73
>sp|Q9A3I3|YX21_CAUCR Uncharacterized isomerase CC_3221 OS=Caulobacter crescentus
(strain ATCC 19089 / CB15) GN=CC_3221 PE=3 SV=1
Length = 275
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 9/76 (11%)
Query: 10 VVDAFTDSAFKGNPAAVCLLEE-D--RDEEWLQAVASEFNISQTCYLTRLTAADSPNPRF 66
+DAF F+GNPA C+LE D + W+QA+A+E N ++T YL + D RF
Sbjct: 5 TIDAFATGPFRGNPA--CVLEPFDVWPADAWMQALAAENNQAETAYLLKTADPD----RF 58
Query: 67 RLRWFTPVAEVSFSFY 82
LRWFTP E +
Sbjct: 59 GLRWFTPTLEAPLCGH 74
>sp|Q98KN6|Y1393_RHILO Uncharacterized isomerase mll1393 OS=Rhizobium loti (strain
MAFF303099) GN=mll1393 PE=3 SV=1
Length = 302
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 7 QYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRF 66
Y + D FT GNP AV L + D +QA+A EFN+S+T + + D+P +
Sbjct: 5 NYLLYDVFTTERLAGNPLAVVLDCKGLDTIAMQAIAREFNLSETVF---VLPPDNPKHKN 61
Query: 67 RLRWFTPVAEVSFSFYNYKLWMKLFGSVLELDDLSFFMG 105
R+R FTP E+ F+ + GS + L +L+ G
Sbjct: 62 RIRIFTPDYEMPFAGH------PTVGSAIALAELAGESG 94
>sp|O31570|YFHB_BACSU Uncharacterized isomerase YfhB OS=Bacillus subtilis (strain 168)
GN=yfhB PE=3 SV=1
Length = 293
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 12 DAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWF 71
+AFT S KGNPA V L +D E+ +Q +A S+T ++ + +AD LR+F
Sbjct: 10 EAFTSSPGKGNPAGVVLQGDDYTEDEMQIIAERAGYSETSFIRKSESAD-----LELRYF 64
Query: 72 TPVAEVSF 79
TP E++
Sbjct: 65 TPGHEMNL 72
>sp|P40788|YDDE_SALTY Uncharacterized isomerase YddE OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=yddE PE=3 SV=2
Length = 297
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 11 VDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRW 70
VDAFT F+GN A V L + + +Q +A E S+T +L + +D R+R+
Sbjct: 8 VDAFTGDPFRGNSAGVVLHADTLSDAQMQLIARELRHSETAFLLKSEESD-----VRIRY 62
Query: 71 FTPVAEVSFSFYNYKLWMKLFGSVLELDDLSF 102
FTP EV + + +VL L + +
Sbjct: 63 FTPTVEVPICGHATVAAHYVRATVLGLGNTTV 94
>sp|O69754|PHZF_PSEAE Trans-2,3-dihydro-3-hydroxyanthranilate isomerase OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=phzF1 PE=3 SV=2
Length = 278
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 7 QYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTA-ADSPNPR 65
+Y V+DAF +GNP AV +D E +Q +A E N+S++ ++ R D+
Sbjct: 3 RYVVIDAFASEPLQGNPVAVFFDCDDLSGERMQRMAREMNLSESTFVLRPQQDGDA---- 58
Query: 66 FRLRWFTPVAEVSFSFYNYKLWMKLFGSVLEL 97
R+R FTPV E+ F+ + L G+ + L
Sbjct: 59 -RIRIFTPVNELPFAGH------PLLGTAIAL 83
>sp|P38765|YHI9_YEAST Uncharacterized isomerase YHI9 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YHI9 PE=1 SV=1
Length = 294
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 13/85 (15%)
Query: 5 LVQYSVVDAFTDSAFKGNPAAVC-LLEEDRDE---EWLQAVASEFNISQTCYLTRLTAAD 60
+V + VD FT+ F GNP AV LE D +E E LQA+A+ N+S+T +L +
Sbjct: 4 MVPFKQVDVFTEKPFMGNPVAVINFLEIDENEVSQEELQAIANWTNLSETTFLFK----- 58
Query: 61 SPNPR---FRLRWFTPVAEVSFSFY 82
P+ + ++LR FTP +E+ F+ +
Sbjct: 59 -PSDKKYDYKLRIFTPRSELPFAGH 82
>sp|P58292|YDDE_ECO57 Uncharacterized isomerase YddE OS=Escherichia coli O157:H7
GN=yddE PE=3 SV=1
Length = 297
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 11 VDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRW 70
VDAFT F+GN A V ++ E +Q +A E S+T +L +D R+R+
Sbjct: 8 VDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHSDDSD-----VRIRY 62
Query: 71 FTPVAEVSFSFY 82
FTP EV +
Sbjct: 63 FTPTVEVPICGH 74
>sp|P37757|YDDE_ECOLI Uncharacterized isomerase YddE OS=Escherichia coli (strain K12)
GN=yddE PE=1 SV=2
Length = 297
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 11 VDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRW 70
VDAFT F+GN A V ++ E +Q +A E S+T +L +D R+R+
Sbjct: 8 VDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHSDDSD-----VRIRY 62
Query: 71 FTPVAEVSFSFY 82
FTP EV +
Sbjct: 63 FTPTVEVPICGH 74
>sp|Q8NIL3|AES1_SCHPO Antisense-enhancing sequence 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=aes1 PE=3 SV=1
Length = 296
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 11 VDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRW 70
+D F++ F+GNP AV ++ ++ +Q +A N+S+T ++ + T + +RLR
Sbjct: 9 IDVFSNKGFRGNPVAVFFDADNLSQKEMQQIAKWTNLSETTFVQKPTIDKA---DYRLRI 65
Query: 71 FTPVAEVSFSFY 82
FTP E+SF+ +
Sbjct: 66 FTPECELSFAGH 77
>sp|P73125|Y1019_SYNY3 Uncharacterized isomerase slr1019 OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=slr1019 PE=3 SV=2
Length = 306
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 10 VVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCY-LTRLTAADSPNPRFRL 68
+D FTD F GNP AV E + +Q +A+E N S+T + L +T + FRL
Sbjct: 7 TLDVFTDQLFGGNPLAVFPDAEGLTDGQMQKIAAEINYSETVFVLPPVTETGN----FRL 62
Query: 69 RWFTPVAEVSFSFY 82
R FTP E+ F+ +
Sbjct: 63 RIFTPKRELDFAGH 76
>sp|Q9CKV2|Y1503_PASMU Uncharacterized isomerase PM1503 OS=Pasteurella multocida (strain
Pm70) GN=PM1503 PE=3 SV=1
Length = 289
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 8 YSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFR 67
Y +V+ F ++ F GNP AV + ++ +Q +A +FN+S+T ++ + T + + +
Sbjct: 7 YHLVNVFAETYFGGNPLAVFPQADGLTDQQMQLIARQFNLSETVFVHQTTESSAVR---K 63
Query: 68 LRWFTPVAEVSFSFY 82
LR FTP E+ F+ +
Sbjct: 64 LRIFTPDYELPFAGH 78
>sp|Q51520|PHZF_PSECL Trans-2,3-dihydro-3-hydroxyanthranilate isomerase OS=Pseudomonas
chlororaphis GN=phzF PE=3 SV=2
Length = 278
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 18/95 (18%)
Query: 7 QYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPR- 65
Y ++DAF + +GNP V +D +Q +A E N+S+T ++ + PR
Sbjct: 3 HYVIIDAFASAPLEGNPVTVFFDADDLSATQMQRIAREMNLSETTFVLK--------PRN 54
Query: 66 ---FRLRWFTPVAEVSFSFYNYKLWMKLFGSVLEL 97
+R FTPV E+ F+ + L G+ + L
Sbjct: 55 CGDALIRIFTPVNELPFAGH------PLLGTAIAL 83
>sp|Q51792|PHZF_PSEFL Trans-2,3-dihydro-3-hydroxyanthranilate isomerase OS=Pseudomonas
fluorescens GN=phzF PE=1 SV=1
Length = 278
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 7 QYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTR-LTAADSPNPR 65
Y ++DAF +GNP AV +D +Q +A E N+S++ ++ + D+
Sbjct: 3 NYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRNGGDA---- 58
Query: 66 FRLRWFTPVAEVSFSFYNYKLWMKLFGSVLEL 97
+R FTPV E+ F+ + L G+ + L
Sbjct: 59 -LIRIFTPVNELPFAGH------PLLGTAIAL 83
>sp|Q9RUQ2|Y1330_DEIRA Uncharacterized isomerase DR_1330 OS=Deinococcus radiodurans
(strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 /
NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_1330
PE=3 SV=1
Length = 308
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 5 LVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNP 64
+ +Y+ V AFT +GN A V L + E +Q +A+ +T ++TRL+
Sbjct: 15 MTRYAEVAAFTTVPGQGNRAGVVLDAGELTGEQMQRLAAFLEAPETVFVTRLSDGLG--- 71
Query: 65 RFRLRWFTPVAEVSFSFYNYKLWMKLF-------GSVLELDDLS 101
R+R+FTP EV F + ++ G LEL+ L+
Sbjct: 72 --RVRYFTPTQEVDFCGHATVALGRVLAQAGRWRGEALELETLA 113
>sp|P58293|Y3446_CLOAB Uncharacterized isomerase CA_C3446 OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=CA_C3446 PE=3 SV=1
Length = 302
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 11 VDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFR--L 68
+D+FT F GNPA V + + +Q +A E N S+T ++ S + R+ +
Sbjct: 10 IDSFTKEKFTGNPAGVITNADGLTDYEMQKIARELNNSETAFIF-----SSKDERYDAWV 64
Query: 69 RWFTPVAEV 77
R+FTP +EV
Sbjct: 65 RFFTPTSEV 73
>sp|Q9KBH7|Y1950_BACHD Uncharacterized isomerase BH1950 OS=Bacillus halodurans (strain
ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 /
C-125) GN=BH1950 PE=3 SV=1
Length = 295
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 12 DAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWF 71
+AF+ KGNPA + L + + Q +A E ++T + AD +R+F
Sbjct: 10 EAFSTVPSKGNPAGIVLDGKGLTDSDRQKIAKEVGFNETAFPLPSERAD-----VNIRFF 64
Query: 72 TPVAEVSF 79
TP E++
Sbjct: 65 TPGHEINL 72
>sp|Q9NZM1|MYOF_HUMAN Myoferlin OS=Homo sapiens GN=MYOF PE=1 SV=1
Length = 2061
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 9 SVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD 60
++VD F + +F G ++E++ + EW Q V + C +LT D
Sbjct: 393 NLVDPFVEVSFAGKKVCTNIIEKNANPEWNQVVNLQIKFPSVCEKIKLTIYD 444
>sp|B3DLH6|MYOF_XENTR Myoferlin OS=Xenopus tropicalis GN=myof PE=2 SV=1
Length = 1929
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 9 SVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD 60
++VD F + +F G +E++ + EW QAV + C +LT D
Sbjct: 272 NLVDPFVEVSFAGKKVCTNRIEKNANPEWNQAVNLQIKFPSMCENIKLTVYD 323
>sp|Q69ZN7|MYOF_MOUSE Myoferlin OS=Mus musculus GN=Myof PE=1 SV=2
Length = 2048
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 9 SVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAAD 60
++VD F + +F G ++E + + EW Q V + C +LT D
Sbjct: 393 NLVDPFVEVSFAGKKVCTNIIERNANPEWNQVVNLQIKFPSMCEKIKLTVYD 444
>sp|Q9KMG3|Y3195_VIBCH Uncharacterized isomerase VC_A0395 OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=VC_A0395
PE=3 SV=1
Length = 279
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 5 LVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNP 64
+++ + D F + GNP V L + L + E T ++T + +
Sbjct: 26 IIKIDIYDVFIGKSAFGNPCGVLELNGWLSDSELHQITREVGQPVTSFITHV------DG 79
Query: 65 RFRLRWFTPVAEVSFSFYN 83
RF +RWF E++ +
Sbjct: 80 RFHIRWFALDGEINLCGHG 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.136 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,503,784
Number of Sequences: 539616
Number of extensions: 1367364
Number of successful extensions: 3500
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3455
Number of HSP's gapped (non-prelim): 29
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)