Query 034019
Match_columns 106
No_of_seqs 113 out of 1043
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 14:56:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dun_A Putative phenazine bios 100.0 1.2E-32 3.9E-37 212.4 11.4 92 4-101 2-100 (263)
2 1xub_A Phenazine biosynthesis 100.0 3.1E-31 1.1E-35 205.2 10.7 78 4-85 20-97 (298)
3 3edn_A Phenazine biosynthesis 100.0 4.2E-30 1.4E-34 198.0 11.6 94 3-101 1-102 (299)
4 1qya_A ORFB, hypothetical prot 100.0 7.3E-30 2.5E-34 197.3 12.1 76 5-85 12-87 (307)
5 1u0k_A Gene product PA4716; sc 100.0 2.1E-29 7.3E-34 193.5 12.0 79 3-85 2-80 (288)
6 1ym5_A YHI9, hypothetical 32.6 100.0 1.1E-29 3.7E-34 196.4 10.1 81 1-85 1-85 (300)
7 1s7j_A Phenazine biosynthesis 100.0 3.4E-29 1.2E-33 190.4 11.4 91 5-101 2-99 (262)
8 2azp_A Hypothetical protein PA 99.9 4.6E-24 1.6E-28 165.5 9.3 74 5-85 3-95 (318)
9 2gke_A DAP epimerase, diaminop 99.9 1.1E-22 3.8E-27 154.7 7.5 85 13-101 2-101 (274)
10 1tm0_A Proline racemase; struc 99.8 1.3E-19 4.4E-24 143.4 6.3 74 5-85 4-95 (350)
11 2otn_A Diaminopimelate epimera 99.7 1.3E-18 4.3E-23 135.0 6.9 83 13-101 25-124 (308)
12 1w61_A B-cell mitogen; racemas 99.6 3.1E-16 1E-20 127.6 8.8 74 5-85 43-135 (414)
13 3ejx_A DAP epimerase, diaminop 97.8 3.7E-05 1.3E-09 60.9 6.5 68 14-85 29-104 (317)
14 3fve_A DAP epimerase, diaminop 97.6 0.00024 8.4E-09 55.2 8.2 87 14-100 4-115 (290)
15 1ym5_A YHI9, hypothetical 32.6 81.8 6 0.00021 29.6 7.5 65 19-84 157-231 (300)
16 1qya_A ORFB, hypothetical prot 80.8 3.9 0.00013 30.7 6.1 62 19-84 168-239 (307)
17 2gke_A DAP epimerase, diaminop 79.6 7.9 0.00027 28.4 7.3 68 19-92 154-232 (274)
18 2azp_A Hypothetical protein PA 78.6 11 0.00037 28.3 7.9 59 19-84 161-242 (318)
19 2ecc_A Homeobox and leucine zi 67.5 2.6 8.9E-05 26.5 1.8 20 32-51 27-46 (76)
20 3edn_A Phenazine biosynthesis 66.6 7.1 0.00024 29.1 4.4 63 20-84 160-233 (299)
21 3nau_A Zinc fingers and homeob 66.2 3 0.0001 25.8 1.8 20 32-51 28-47 (66)
22 1du6_A PBX1, homeobox protein 63.8 3.4 0.00012 24.0 1.7 19 32-50 30-48 (64)
23 1k61_A Mating-type protein alp 62.9 3.8 0.00013 23.5 1.8 19 32-50 25-43 (60)
24 1akh_A Protein (mating-type pr 62.6 3.8 0.00013 23.6 1.7 19 32-50 29-47 (61)
25 2otn_A Diaminopimelate epimera 62.3 7.3 0.00025 29.3 3.7 60 19-84 183-250 (308)
26 1x2m_A LAG1 longevity assuranc 61.6 4 0.00014 24.8 1.7 19 32-50 25-43 (64)
27 1ig7_A Homeotic protein MSX-1; 60.6 4.4 0.00015 23.0 1.7 19 32-50 24-42 (58)
28 3a03_A T-cell leukemia homeobo 58.9 5 0.00017 22.8 1.8 19 32-50 21-39 (56)
29 1jgg_A Segmentation protein EV 58.7 4.8 0.00017 23.1 1.7 19 32-50 25-43 (60)
30 3a02_A Homeobox protein arista 57.3 5.3 0.00018 22.9 1.7 19 32-50 23-41 (60)
31 2hdd_A Protein (engrailed home 55.1 6.2 0.00021 22.7 1.8 19 32-50 27-45 (61)
32 2h1k_A IPF-1, pancreatic and d 54.8 6.3 0.00021 22.9 1.8 19 32-50 27-45 (63)
33 3rkq_A Homeobox protein NKX-2. 54.6 6.4 0.00022 22.0 1.8 19 32-50 26-44 (58)
34 2k40_A Homeobox expressed in E 54.1 6.4 0.00022 23.0 1.8 19 32-50 25-43 (67)
35 1bw5_A ISL-1HD, insulin gene e 54.1 6.3 0.00022 23.0 1.7 19 32-50 27-45 (66)
36 2dmu_A Homeobox protein goosec 53.3 6.7 0.00023 23.2 1.8 19 32-50 31-49 (70)
37 1puf_B PRE-B-cell leukemia tra 53.2 6.6 0.00023 23.4 1.7 19 32-50 28-46 (73)
38 1uhs_A HOP, homeodomain only p 52.9 6.9 0.00023 23.3 1.8 19 32-50 26-44 (72)
39 2e19_A Transcription factor 8; 52.5 7.1 0.00024 23.1 1.8 19 32-50 27-45 (64)
40 1x2n_A Homeobox protein pknox1 52.3 7.1 0.00024 23.3 1.8 19 32-50 34-52 (73)
41 2vi6_A Homeobox protein nanog; 52.3 7.3 0.00025 22.4 1.8 19 32-50 27-45 (62)
42 2da3_A Alpha-fetoprotein enhan 52.3 6.9 0.00023 23.6 1.7 18 33-50 42-59 (80)
43 2da2_A Alpha-fetoprotein enhan 52.3 6.8 0.00023 23.1 1.7 19 32-50 31-49 (70)
44 2ecb_A Zinc fingers and homeob 52.0 7 0.00024 25.0 1.8 20 32-51 35-54 (89)
45 2dmn_A Homeobox protein TGIF2L 51.8 7.3 0.00025 24.1 1.8 19 32-50 34-52 (83)
46 2cra_A Homeobox protein HOX-B1 51.1 7.6 0.00026 23.0 1.8 19 32-50 31-49 (70)
47 2djn_A Homeobox protein DLX-5; 50.4 7.4 0.00025 23.0 1.6 19 32-50 31-49 (70)
48 2lk2_A Homeobox protein TGIF1; 50.0 7.1 0.00024 25.3 1.5 18 33-50 33-50 (89)
49 2cqx_A LAG1 longevity assuranc 50.0 8 0.00027 23.4 1.7 19 32-50 33-51 (72)
50 2e1o_A Homeobox protein PRH; D 49.6 8.3 0.00028 22.8 1.7 19 32-50 31-49 (70)
51 2dmq_A LIM/homeobox protein LH 49.3 8.3 0.00028 23.3 1.8 19 32-50 31-49 (80)
52 1ftt_A TTF-1 HD, thyroid trans 49.2 8.4 0.00029 22.7 1.7 19 32-50 26-44 (68)
53 1zq3_P PRD-4, homeotic bicoid 49.1 8.4 0.00029 22.7 1.7 19 32-50 26-44 (68)
54 1wh5_A ZF-HD homeobox family p 48.4 8.1 0.00028 23.8 1.6 20 32-51 45-64 (80)
55 1wi3_A DNA-binding protein SAT 47.9 10 0.00034 23.9 1.9 20 32-51 32-51 (71)
56 2hi3_A Homeodomain-only protei 47.8 8.9 0.00031 22.9 1.7 19 32-50 27-45 (73)
57 2dmt_A Homeobox protein BARH-l 46.9 9.7 0.00033 23.1 1.8 18 33-50 42-59 (80)
58 2l9r_A Homeobox protein NKX-3. 46.7 9.6 0.00033 23.1 1.7 19 32-50 28-46 (69)
59 2da5_A Zinc fingers and homeob 46.5 10 0.00034 22.9 1.8 19 32-50 31-49 (75)
60 2l7z_A Homeobox protein HOX-A1 46.4 11 0.00037 22.5 1.9 19 32-50 31-49 (73)
61 1xub_A Phenazine biosynthesis 45.6 24 0.00082 26.3 4.1 56 20-84 171-235 (298)
62 1fjl_A Paired protein; DNA-bin 45.3 10 0.00036 23.0 1.8 18 33-50 43-60 (81)
63 2da1_A Alpha-fetoprotein enhan 45.3 6.5 0.00022 23.2 0.7 18 33-50 32-49 (70)
64 1b72_B Protein (PBX1); homeodo 45.1 10 0.00035 23.2 1.7 19 32-50 28-46 (87)
65 1puf_A HOX-1.7, homeobox prote 45.0 11 0.00037 22.8 1.8 18 33-50 38-55 (77)
66 2dms_A Homeobox protein OTX2; 44.7 11 0.00037 22.9 1.7 19 32-50 31-49 (80)
67 2cue_A Paired box protein PAX6 43.7 11 0.00039 22.8 1.7 19 32-50 31-49 (80)
68 1nk2_P Homeobox protein VND; h 42.8 12 0.00041 22.5 1.7 19 32-50 33-51 (77)
69 1mnm_C Protein (MAT alpha-2 tr 42.4 12 0.00042 23.0 1.8 19 32-50 54-72 (87)
70 1le8_B Mating-type protein alp 42.1 13 0.00043 22.9 1.8 19 32-50 29-47 (83)
71 3k2a_A Homeobox protein MEIS2; 41.8 13 0.00045 22.0 1.8 18 33-50 26-43 (67)
72 1wh7_A ZF-HD homeobox family p 41.8 9.1 0.00031 23.7 1.1 20 32-51 45-64 (80)
73 2da4_A Hypothetical protein DK 41.7 6.3 0.00022 24.0 0.3 18 33-50 37-54 (80)
74 2dn0_A Zinc fingers and homeob 41.7 9.3 0.00032 23.0 1.1 18 33-50 33-50 (76)
75 2m0c_A Homeobox protein arista 41.0 14 0.00047 21.8 1.8 19 32-50 33-51 (75)
76 1b8i_A Ultrabithorax, protein 40.5 14 0.00047 22.6 1.8 18 33-50 45-62 (81)
77 1ahd_P Antennapedia protein mu 39.1 9.1 0.00031 22.6 0.7 18 33-50 27-44 (68)
78 2kt0_A Nanog, homeobox protein 39.1 15 0.0005 22.3 1.7 18 33-50 47-64 (84)
79 1b72_A Protein (homeobox prote 38.5 15 0.00052 23.1 1.8 18 33-50 59-76 (97)
80 2da7_A Zinc finger homeobox pr 37.7 22 0.00076 22.2 2.4 21 31-51 28-48 (71)
81 2ly9_A Zinc fingers and homeob 37.6 19 0.00066 21.2 2.1 19 32-50 30-48 (74)
82 2r5y_A Homeotic protein sex co 37.1 16 0.00056 22.5 1.7 18 33-50 53-70 (88)
83 3m20_A 4-oxalocrotonate tautom 36.7 45 0.0015 18.8 3.6 19 26-45 4-22 (62)
84 2dmp_A Zinc fingers and homeob 35.1 19 0.00063 22.5 1.8 20 32-51 37-56 (89)
85 4dun_A Putative phenazine bios 32.6 55 0.0019 24.2 4.3 22 63-84 184-207 (263)
86 3mb2_B 4-oxalocrotonate tautom 31.1 41 0.0014 21.1 2.8 17 29-45 9-25 (72)
87 3ry0_A Putative tautomerase; o 30.6 47 0.0016 18.7 3.0 19 27-45 5-23 (65)
88 3a01_A Homeodomain-containing 30.3 21 0.00072 22.4 1.4 18 33-50 42-59 (93)
89 1otf_A 4-oxalocrotonate tautom 30.0 51 0.0017 18.0 3.0 16 30-45 8-23 (62)
90 2qt7_A Receptor-type tyrosine- 29.2 36 0.0012 22.1 2.4 31 26-56 7-41 (91)
91 3nar_A ZHX1, zinc fingers and 29.0 27 0.00093 21.9 1.8 18 33-50 50-67 (96)
92 2opa_A Probable tautomerase YW 28.3 57 0.0019 17.8 3.0 15 31-45 9-23 (61)
93 2ioj_A Hypothetical protein AF 28.2 53 0.0018 21.4 3.2 32 22-55 74-105 (139)
94 4hti_A Receptor-type tyrosine- 28.0 38 0.0013 22.3 2.4 33 24-56 12-48 (99)
95 1yz8_P Pituitary homeobox 2; D 28.0 7.9 0.00027 22.8 -0.9 18 33-50 28-45 (68)
96 2d5v_A Hepatocyte nuclear fact 27.9 27 0.00093 23.9 1.8 20 32-51 121-140 (164)
97 3neh_A Renal dipeptidase famil 27.9 12 0.0004 29.2 -0.2 32 20-51 194-225 (318)
98 2ns6_A Mobilization protein A; 27.5 51 0.0018 23.4 3.2 23 26-48 75-97 (185)
99 2pw0_A PRPF methylaconitate is 25.9 1.6E+02 0.0056 23.6 6.2 64 19-85 18-112 (397)
100 3i9v_2 NADH-quinone oxidoreduc 24.9 46 0.0016 23.6 2.5 19 31-49 39-57 (181)
101 2x4k_A 4-oxalocrotonate tautom 24.2 75 0.0026 17.1 3.0 16 30-45 11-26 (63)
102 3d1n_I POU domain, class 6, tr 24.1 35 0.0012 23.1 1.7 18 33-50 118-135 (151)
103 3m21_A Probable tautomerase HP 24.0 83 0.0028 17.8 3.2 14 32-45 13-26 (67)
104 2cuf_A FLJ21616 protein; homeo 22.6 30 0.001 21.6 1.1 15 32-46 31-45 (95)
105 4ayb_G DNA-directed RNA polyme 22.5 11 0.00036 26.4 -1.2 12 75-86 67-78 (132)
106 3mb2_A 4-oxalocrotonate tautom 22.4 85 0.0029 18.1 3.1 19 27-45 6-24 (72)
107 3ejx_A DAP epimerase, diaminop 22.3 87 0.003 24.3 3.9 61 19-84 185-258 (317)
108 3abf_A 4-oxalocrotonate tautom 22.2 90 0.0031 17.1 3.1 15 31-45 10-24 (64)
109 1hji_B NUN-protein; bacterioph 22.0 78 0.0027 15.8 2.3 14 31-44 2-15 (26)
110 1au7_A Protein PIT-1, GHF-1; c 21.2 44 0.0015 22.6 1.8 18 33-50 112-129 (146)
111 3pk1_B Apoptosis regulator BAX 21.0 36 0.0012 18.4 1.0 12 35-46 13-24 (34)
112 3oq9_A Tumor necrosis factor r 21.0 38 0.0013 21.4 1.3 20 32-51 9-28 (86)
113 1mh3_A Maltose binding-A1 home 20.7 42 0.0014 25.1 1.7 19 32-50 389-407 (421)
No 1
>4dun_A Putative phenazine biosynthesis PHZC/PHZF protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: BTB; 1.76A {Clostridium difficile}
Probab=99.98 E-value=1.2e-32 Score=212.36 Aligned_cols=92 Identities=30% Similarity=0.544 Sum_probs=79.1
Q ss_pred cceeEEEEeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCch
Q 034019 4 KLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYN 83 (106)
Q Consensus 4 ~~~~~~~vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGHa 83 (106)
+.++|++|||||+.+|+|||+|||+++++|++++||+||+|+|+|||+||.++ .++|++|||||..|+|||||+
T Consensus 2 ~~~~~~~vDaFt~~~~~GNp~aVv~~~~~l~~~~mq~iA~e~~~sET~Fv~~~------~~d~~lR~Ftp~~Ev~~CGHa 75 (263)
T 4dun_A 2 NAMEYYIVDSFATKLFKGNPAGVCVLDRRIPLELMQKIAEENNLPETAFVVKG------KGNYELRWFTPKAEIDLCGHA 75 (263)
T ss_dssp -CEEEEEEEETCSSTTCSEEEEEEEESSCCCHHHHHHHHHHHCSSEEEEEEEE------TTEEEEEEECSSCEESCCHHH
T ss_pred CcceEEEEEEeeCCCCCCCCEEEEECCCCCCHHHHHHHHHHhCCCeEEEEEeC------CCcEEEEEEeCCcEeccCCcH
Confidence 35899999999999999999999999999999999999999999999999986 358999999999999999999
Q ss_pred HHH--HHH---Hc--CCeEEEeeec
Q 034019 84 YKL--WMK---LF--GSVLELDDLS 101 (106)
Q Consensus 84 tva--w~~---~~--~~~~~~~~~~ 101 (106)
|++ |.. +. +..+.+++.+
T Consensus 76 tl~~a~~l~~~~~~~~~~~~~et~a 100 (263)
T 4dun_A 76 TLAAAYVISNFIDVNVKKIDFFTQS 100 (263)
T ss_dssp HHHHHHHHHHHTSTTCSEEEEEETT
T ss_pred HHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 873 222 11 3567777653
No 2
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A
Probab=99.97 E-value=3.1e-31 Score=205.17 Aligned_cols=78 Identities=28% Similarity=0.480 Sum_probs=72.3
Q ss_pred cceeEEEEeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCch
Q 034019 4 KLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYN 83 (106)
Q Consensus 4 ~~~~~~~vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGHa 83 (106)
++++|++|||||+++|+|||++||+++++|++++||+||+|+|+|||+||.++. + .++|++|||||..|+||||||
T Consensus 20 ~~~~~~~vd~Ft~~~~~GNp~aVv~~~~~l~~~~mq~IA~e~~~sEt~Fv~~~~---~-~~d~~lR~Ftp~~E~~~CGha 95 (298)
T 1xub_A 20 HMHNYVIIDAFASVPLEGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPR---N-GGDALIRIFTPVNELPFAGAP 95 (298)
T ss_dssp -CEEEEEEEETCSSTTSSEEEEEECSGGGSCHHHHHHHHHHHCSSCEEEEECCS---S-SSSEEEEEECSSCEESCCHHH
T ss_pred eeeEEEEEEeccCCCCCCCcEEEEECCCCCCHHHHHHHHHHhCCceEEEEecCC---C-CCcEEEEEEcCCCCcCcCchH
Confidence 458999999999999999999999999999999999999999999999999862 1 467999999999999999999
Q ss_pred HH
Q 034019 84 YK 85 (106)
Q Consensus 84 tv 85 (106)
|+
T Consensus 96 t~ 97 (298)
T 1xub_A 96 LL 97 (298)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 3
>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis}
Probab=99.96 E-value=4.2e-30 Score=198.04 Aligned_cols=94 Identities=23% Similarity=0.325 Sum_probs=80.7
Q ss_pred CcceeEEEEeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCc
Q 034019 3 KKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFY 82 (106)
Q Consensus 3 ~~~~~~~~vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGH 82 (106)
|++++|++|||||+.+++|||+|||+++++|++++||+||+|+|+|||+||.++. .++|++|||||..|++||||
T Consensus 1 m~~~~~~~vD~Ft~~~~~GNp~aVv~d~~~l~~~~mq~iA~~~~~~et~fv~~~~-----~ad~~~R~FnpgsE~~~CGh 75 (299)
T 3edn_A 1 MKTINVFHYDAFTNKPNMGNPAGIVLDADGLTEEEMQRIAEKVGFNETSFVLSSE-----VADIRMRYFTPGYEMDLCGH 75 (299)
T ss_dssp CCEEEEEEEEESCSSTTSSEEEEEESCCTTCCHHHHHHHHHHHCSSCEEEEECCS-----SSSEEEEEECSSCEESCCHH
T ss_pred CCceEEEEEEEeeCCCCCCCCEEEEECCCCCCHHHHHHHHHHhCCCeEEEEecCC-----CCCEEEEEECCCCccccCcc
Confidence 5668999999999999999999999999999999999999999999999999872 36899999999999999999
Q ss_pred hHH--HHHHH-c-----CCeEEEeeec
Q 034019 83 NYK--LWMKL-F-----GSVLELDDLS 101 (106)
Q Consensus 83 atv--aw~~~-~-----~~~~~~~~~~ 101 (106)
+|+ ||... . ++.+.++|.+
T Consensus 76 ~t~~~a~~l~~~g~~~~~~~~~~eT~a 102 (299)
T 3edn_A 76 GTVGTIYALRERGLLEEKASLTIETKA 102 (299)
T ss_dssp HHHHHHHHHHHTTCSCSCSEEEEEETT
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEcCc
Confidence 986 33321 1 3467777653
No 4
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiot biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A
Probab=99.96 E-value=7.3e-30 Score=197.33 Aligned_cols=76 Identities=33% Similarity=0.464 Sum_probs=69.2
Q ss_pred ceeEEEEeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCchH
Q 034019 5 LVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYNY 84 (106)
Q Consensus 5 ~~~~~~vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGHat 84 (106)
+++|++|||||+.+++|||++||+++++|++++||+||+|+|+|||+||.|. + .++|++|||||..|+|||||||
T Consensus 12 ~~~~~~vD~Ft~~~~~GNp~aVv~~~~~l~~~~mq~iA~e~~~set~fv~p~----~-~~d~~~R~Ftp~~E~~~CGh~t 86 (307)
T 1qya_A 12 KPQVYHVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGHSETAFLLHS----D-DSDVRIRYFTPTVEVPICGHAT 86 (307)
T ss_dssp CCEEEEEEETCSSTTCSEEEEEEECCTTCCHHHHHHHHHHHCCSCEEEEECC----S-SSSEEEEEECSSSEECC--CHH
T ss_pred ceEEEEEEeccCCCCCcceeEEEeCCCCCCHHHHHHHHHHhCCceEEEEEec----C-CCceEEEEECCCCEeCCCchHH
Confidence 4789999999999999999999999999999999999999999999999954 2 3689999999999999999998
Q ss_pred H
Q 034019 85 K 85 (106)
Q Consensus 85 v 85 (106)
+
T Consensus 87 ~ 87 (307)
T 1qya_A 87 V 87 (307)
T ss_dssp H
T ss_pred H
Confidence 7
No 5
>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein initiative, structural genomics, PSI, midwest center for ST genomics; 1.50A {Pseudomonas aeruginosa} SCOP: d.21.1.2 d.21.1.2
Probab=99.96 E-value=2.1e-29 Score=193.52 Aligned_cols=79 Identities=24% Similarity=0.240 Sum_probs=72.7
Q ss_pred CcceeEEEEeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCc
Q 034019 3 KKLVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFY 82 (106)
Q Consensus 3 ~~~~~~~~vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGH 82 (106)
|++++|++|||||+.++.|||++||.++++|++++||+||+|+|+|||+||.++. + .++|++|||||..|++||||
T Consensus 2 ~m~~~~~~vD~Ft~~~~~GNp~~Vv~~~~~l~~~~mq~ia~~~~~set~fv~~~~---~-~~d~~~R~Ftp~~E~~~CGh 77 (288)
T 1u0k_A 2 HMSRRYWQLDVFAERPLTGNGLAVFDDASALDDAAMQAWTRELRQFESIFLLPGD---D-PRAFRARIFTLEEELPFAGH 77 (288)
T ss_dssp -CCCEEEEEEESCSSTTCSEEEEEESCCTTCCHHHHHHHHHHHCCSEEEEEEECS---C-TTEEEEEEEESSCBCCSCCT
T ss_pred CceeEEEEEEEecCCCCCCCceEEEeCCCCCCHHHHHHHHHHhCCCeEEEEecCC---C-CCcEEEEEECCCCeeCcCch
Confidence 3468999999999999999999999998899999999999999999999999862 2 57899999999999999999
Q ss_pred hHH
Q 034019 83 NYK 85 (106)
Q Consensus 83 atv 85 (106)
+|+
T Consensus 78 ~t~ 80 (288)
T 1u0k_A 78 PLL 80 (288)
T ss_dssp HHH
T ss_pred HHH
Confidence 987
No 6
>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-29 Score=196.43 Aligned_cols=81 Identities=36% Similarity=0.484 Sum_probs=72.2
Q ss_pred CCCcceeEEEEeeccCCCCCCCeeEEEE----cCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCc
Q 034019 1 MAKKLVQYSVVDAFTDSAFKGNPAAVCL----LEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAE 76 (106)
Q Consensus 1 m~~~~~~~~~vdvFt~~~f~GNPaaVv~----~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~E 76 (106)
|.|. ++|++||+||+.+++|||++||. ++++|++++||+||+|+|+|||+||.++. ++.++|++|||||..|
T Consensus 1 ~~~~-~~~~~vd~Ft~~~~~GNp~~Vv~~~~~d~~~l~~~~mq~iA~~~~~set~fv~~~~---~~~~d~~lR~Ftp~~E 76 (300)
T 1ym5_A 1 MTLM-VPFKQVDVFTEKPFMGNPVAVINFLEIDENEVSQEELQAIANWTNLSETTFLFKPS---DKKYDYKLRIFTPRSE 76 (300)
T ss_dssp -CEE-EEEEEEEETCSSTTSSEEEEEEECTTSCGGGSCHHHHHHHHHHHTSSCEEEEECCS---STTCSEEEEEECSSCE
T ss_pred CCcc-ceEEEEEeccCCCCCCCCeEEEEeccCCCCCCCHHHHHHHHHHhCCCceEEEecCC---CCCCcEEEEEEcCCCC
Confidence 6655 89999999999999999999994 56789999999999999999999999862 2346899999999999
Q ss_pred cCCCCchHH
Q 034019 77 VSFSFYNYK 85 (106)
Q Consensus 77 i~~cGHatv 85 (106)
+|||||||+
T Consensus 77 ~~~CGh~t~ 85 (300)
T 1ym5_A 77 LPFAGHPTI 85 (300)
T ss_dssp ESCCHHHHH
T ss_pred cCcCCCcHH
Confidence 999999987
No 7
>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural PSI, protein structure initiative; 2.30A {Enterococcus faecalis} SCOP: d.21.1.2
Probab=99.96 E-value=3.4e-29 Score=190.44 Aligned_cols=91 Identities=34% Similarity=0.507 Sum_probs=77.9
Q ss_pred ceeEEEEeeccCCCCCCCeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCCCccCCCCchH
Q 034019 5 LVQYSVVDAFTDSAFKGNPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPVAEVSFSFYNY 84 (106)
Q Consensus 5 ~~~~~~vdvFt~~~f~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~~Ei~~cGHat 84 (106)
+++|++|||||+.++.|||++||++++++++++||+||+|+|+|||+||.++ .++|++|||||..|++||||||
T Consensus 2 ~~~~~~vd~Ft~~~~~GNp~~Vv~~~~~l~~~~~q~ia~~~~~set~fv~~~------~~d~~~R~Ftp~~E~~~CGh~t 75 (262)
T 1s7j_A 2 SYPYYIVDAFAEEVFKGNPAAVYVLEKWLPEAVMQNIAIENNLSETAFTVKE------GQSYALRWFTPEREIDLCGHAT 75 (262)
T ss_dssp EEEEEEEEETCSSTTSSEEEEEEECSSCCCHHHHHHHHHHHCCSCEEEEEEE------TTEEEEEEECSSSEESCCHHHH
T ss_pred cceEEEEEeccCCCCCCCCeEEEECCCCCCHHHHHHHHHHhCCCEEEEEEcC------CCCEEEEEECCCCccCcCchHH
Confidence 4789999999999999999999999999999999999999999999999975 2579999999999999999998
Q ss_pred HH--HHH---Hc--CCeEEEeeec
Q 034019 85 KL--WMK---LF--GSVLELDDLS 101 (106)
Q Consensus 85 va--w~~---~~--~~~~~~~~~~ 101 (106)
++ |.. +. +..+.+++.+
T Consensus 76 ~~~a~~l~~~g~~~~~~~~~et~~ 99 (262)
T 1s7j_A 76 LATAFVLFNYYSVAEETLHFTSQS 99 (262)
T ss_dssp HHHHHHHHHHSCCCSSEEEEEETT
T ss_pred HHHHHHHHHhcCCCCCeEEEEeCc
Confidence 73 322 11 2456676653
No 8
>2azp_A Hypothetical protein PA1268; PA1268,APC5861,sulfur SAD, structural genomics, PSI, protein structure initiative; 2.13A {Pseudomonas aeruginosa}
Probab=99.90 E-value=4.6e-24 Score=165.51 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=67.4
Q ss_pred ceeEEEEeeccCCCCCCCeeEEEEcCC-CCC----HHHHHHHHHHhC------Cce--------eEEEecCCCCCCCCCc
Q 034019 5 LVQYSVVDAFTDSAFKGNPAAVCLLEE-DRD----EEWLQAVASEFN------ISQ--------TCYLTRLTAADSPNPR 65 (106)
Q Consensus 5 ~~~~~~vdvFt~~~f~GNPaaVv~~~~-~l~----~~~mq~IA~e~n------~sE--------TaFv~~~~~~~~~~~~ 65 (106)
..+|++||+|+ +|||++||+++. +|+ +++||+||+|+| +|| |+||.++. ++.++
T Consensus 3 ~~~~~~vd~ft----~GNp~~Vv~~~~~~l~~~~~~~~mq~ia~e~~~~r~~l~sEprg~~~~~t~fl~~p~---~~~ad 75 (318)
T 2azp_A 3 MQRIRIIDSHT----GGEPTRLVIGGFPDLGQGDMAERRRLLGERHDAWRAACILEPRGSDVLVGALLCAPV---DPEAC 75 (318)
T ss_dssp CEEEEEEEEEE----TTEEEEEEEECSCCCCSSCHHHHHHHHHHHCHHHHHHHHSTTTSCTTCEEEEEECCS---STTSS
T ss_pred ccEEEEEEecC----CCcceEEEeCCCCCCCCCCHHHHHHHHHHhhchhhheeeeccCCCCCceEEEEECCC---CCCCc
Confidence 35799999999 999999999987 888 999999999999 999 99999873 23578
Q ss_pred eEEEEecCCCccCCCCchHH
Q 034019 66 FRLRWFTPVAEVSFSFYNYK 85 (106)
Q Consensus 66 ~~vR~FTp~~Ei~~cGHatv 85 (106)
|++|||||.+|++||||+|+
T Consensus 76 ~~~r~Ftp~gE~~~CGh~t~ 95 (318)
T 2azp_A 76 AGVIFFNNSGYLGMCGHGTI 95 (318)
T ss_dssp EEEEEECSSSBCSCCHHHHH
T ss_pred EEEEEEcCCCccCcCccHHH
Confidence 99999999999999999987
No 9
>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex, covalently bound inhibitor, isomer; HET: ZDP; 1.35A {Haemophilus influenzae} SCOP: d.21.1.1 d.21.1.1 PDB: 1gqz_A* 2gkj_A* 2q9h_A* 2q9j_A 1bwz_A
Probab=99.87 E-value=1.1e-22 Score=154.69 Aligned_cols=85 Identities=16% Similarity=0.086 Sum_probs=69.5
Q ss_pred eccCCCCCCCeeEEEEcCC----CCCHHHHHHHHHH---hCCceeEEEecCCCCCCCCCceEEEEecCC-CccCCCCchH
Q 034019 13 AFTDSAFKGNPAAVCLLEE----DRDEEWLQAVASE---FNISQTCYLTRLTAADSPNPRFRLRWFTPV-AEVSFSFYNY 84 (106)
Q Consensus 13 vFt~~~f~GNPaaVv~~~~----~l~~~~mq~IA~e---~n~sETaFv~~~~~~~~~~~~~~vR~FTp~-~Ei~~cGHat 84 (106)
.|++.++.|||+ ||+++. ++++++||+||+| +|+|||+||.++. ++.++|++|||||. .|++||||+|
T Consensus 2 ~Ftk~~~~GNp~-Vv~d~~~~~~~l~~~~~q~ia~e~~G~g~~et~fv~~~~---~~~~d~~~r~F~pdG~E~~~CGh~t 77 (274)
T 2gke_A 2 QFSKMHGLGNDF-VVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPY---DPELDFHYRIFNADGSEVSQCGNGA 77 (274)
T ss_dssp EEEEEEETTEEE-EEEECSSSCCCCCHHHHHHHHCTTTSCCCSEEEEEECCS---STTSSEEEEEEETTSCEESCCHHHH
T ss_pred eEEEEecCCCCE-EEECCCcccCCCCHHHHHHhhCcCCCcccceEEEECCCC---CCCCCEEEEEECCCCChHHhCcChH
Confidence 699999999999 998876 7999999999999 9999999999863 23568999999999 9999999998
Q ss_pred HH--HHHH-c----CCeEEEeeec
Q 034019 85 KL--WMKL-F----GSVLELDDLS 101 (106)
Q Consensus 85 va--w~~~-~----~~~~~~~~~~ 101 (106)
++ |... . ...+.+++.+
T Consensus 78 ~~~a~~l~~~g~~~~~~~~~et~a 101 (274)
T 2gke_A 78 RCFARFVTLKGLTNKKDISVSTQK 101 (274)
T ss_dssp HHHHHHHHHTTSCCCSEEEEECSS
T ss_pred HHHHHHHHHhCCCCCceEEEEeCC
Confidence 73 2221 1 2356676653
No 10
>1tm0_A Proline racemase; structural genomics, alpha-beta protein THAT resembles doubl barrel, in EACH of which AN alpha helix is sandwiched, PSI; 2.80A {Brucella melitensis} SCOP: d.21.1.3
Probab=99.78 E-value=1.3e-19 Score=143.36 Aligned_cols=74 Identities=12% Similarity=0.032 Sum_probs=67.0
Q ss_pred ceeEEEEeeccCCCCCCCeeEEEEcCC-CCCHHHHHHHHHHhC-Cce----------------eEEEecCCCCCCCCCce
Q 034019 5 LVQYSVVDAFTDSAFKGNPAAVCLLEE-DRDEEWLQAVASEFN-ISQ----------------TCYLTRLTAADSPNPRF 66 (106)
Q Consensus 5 ~~~~~~vdvFt~~~f~GNPaaVv~~~~-~l~~~~mq~IA~e~n-~sE----------------TaFv~~~~~~~~~~~~~ 66 (106)
+..|++||+|| +|||++||.++. +|+.++||++|+++| +|| |+||.++. ++.+++
T Consensus 4 ~~~~~~vd~~t----~Gnp~~vv~~~~~~l~~~~m~~~~~~~~~~~~~r~~l~~eprG~~g~~g~fv~~p~---~~~aD~ 76 (350)
T 1tm0_A 4 TKVIHIVGCHA----EGEVGDVIVGGVAPPPGETVWEQSRFIANDETLRNFVLNKPRGGVFRHVNLLVPPK---DPRAQM 76 (350)
T ss_dssp SCCEEEEEEEE----TTEECEEEEESCCCCSSSSHHHHHHHHHHHCHHHHHHHSTTTSCSSCCEEEEECCC---SSSCSE
T ss_pred ccEEEEEEeCC----CCcceEEEeCCcCCCCchhHHHHHHHHHhhhHHHHHhhcCCCCCCCccEEEEeCCC---CCCCCE
Confidence 46799999998 999999999874 899999999999999 887 99999873 345789
Q ss_pred EEEEecCCCccCCCCchHH
Q 034019 67 RLRWFTPVAEVSFSFYNYK 85 (106)
Q Consensus 67 ~vR~FTp~~Ei~~cGHatv 85 (106)
++|||+|.+|++||||+++
T Consensus 77 ~~rifn~dge~~mCGhgt~ 95 (350)
T 1tm0_A 77 GFIIMEPADTPPMSGSNSI 95 (350)
T ss_dssp EEECCCSSCCCSCCHHHHH
T ss_pred EEEEEECCCccccccchHH
Confidence 9999999999999999986
No 11
>2otn_A Diaminopimelate epimerase; DAP, lysine ME lanthionine, isomerase; 2.40A {Bacillus anthracis str}
Probab=99.75 E-value=1.3e-18 Score=134.98 Aligned_cols=83 Identities=13% Similarity=0.100 Sum_probs=62.4
Q ss_pred eccCCCCCCCeeEEEEcCCC-----CCHHHHH-HHHHH-h--CCceeEEEecCCCCCCCCCceEEEEecCCC-ccCCCCc
Q 034019 13 AFTDSAFKGNPAAVCLLEED-----RDEEWLQ-AVASE-F--NISQTCYLTRLTAADSPNPRFRLRWFTPVA-EVSFSFY 82 (106)
Q Consensus 13 vFt~~~f~GNPaaVv~~~~~-----l~~~~mq-~IA~e-~--n~sETaFv~~~~~~~~~~~~~~vR~FTp~~-Ei~~cGH 82 (106)
.|++.++.|||+ ||+++.+ +++++|| +||+| + |.++|.|+.|+ +.++|++|||||.+ |++||||
T Consensus 25 ~Ftk~~~~GN~~-vVid~~~~~~~~l~~~~mq~~ia~e~~Gig~d~~~~v~p~-----~~ad~~~R~FtpdgsE~~~CGh 98 (308)
T 2otn_A 25 SFTKMHGLGNSY-IYVNMFEEQIPEEDLALVAEKVSNINTGIGADGMILICPS-----DVAPVKMRMFNNDGSEGKSCGN 98 (308)
T ss_dssp EEEEEEETTEEE-EEEETTTCCCCGGGHHHHHHHHHCTTTSCCCSEEEEEECC-----SSSSEEEEEEETTSCEECCTTT
T ss_pred EEEEecCCCCCE-EEEeCCCcccccCCHHHHHHHHhCCCCCccceEEEEeccC-----CCCcEEEEEEcCCCChHHhCcC
Confidence 799999999999 6666544 7899999 99999 6 45666666542 24689999999998 9999999
Q ss_pred hHHH--HHHH-c----CCeEEEeeec
Q 034019 83 NYKL--WMKL-F----GSVLELDDLS 101 (106)
Q Consensus 83 atva--w~~~-~----~~~~~~~~~~ 101 (106)
||++ |... . ...+.+++.+
T Consensus 99 ~t~~~a~~l~~~g~~~~~~~~~eT~a 124 (308)
T 2otn_A 99 GLRCVAKYAYEHKLVEDTVFTIETLA 124 (308)
T ss_dssp THHHHHHHHHHTTSCSSSEEEEEETT
T ss_pred hHHHHHHHHHHcCCCCCCeEEEEeCC
Confidence 9873 2221 1 2457776653
No 12
>1w61_A B-cell mitogen; racemase, racemase pyridoxal phosphate-independent, stereo inversion, acid/base catalysis, homodimer, alpha/beta domains; 2.1A {Trypanosoma cruzi} PDB: 1w62_A
Probab=99.65 E-value=3.1e-16 Score=127.57 Aligned_cols=74 Identities=9% Similarity=0.093 Sum_probs=62.0
Q ss_pred ceeEEEEeeccCCCCCCCeeEEEEcC-CCC---C-HHHHHHHHHHhCC------c--------eeEEEecCCCCCCCCCc
Q 034019 5 LVQYSVVDAFTDSAFKGNPAAVCLLE-EDR---D-EEWLQAVASEFNI------S--------QTCYLTRLTAADSPNPR 65 (106)
Q Consensus 5 ~~~~~~vdvFt~~~f~GNPaaVv~~~-~~l---~-~~~mq~IA~e~n~------s--------ETaFv~~~~~~~~~~~~ 65 (106)
+..|.++|+|+ .|||++||++. .+| + .++||.||+|++. + ||+||.++. ++.++
T Consensus 43 ~~~~~~vd~h~----~GNp~~VV~d~~~~l~~~t~~e~~~~~~~e~~~~r~~l~~EprG~~g~~g~fl~pp~---~~~AD 115 (414)
T 1w61_A 43 KKSFTCIDMHT----EGEAARIVTSGLPHIPGSNMAEKKAYLQENMDYLRRGIMLEPRGHDDMFGAFLFDPI---EEGAD 115 (414)
T ss_dssp CEEEEEEEEEE----TTEEEEEEEECCCCCCCSSHHHHHHHHHHHCHHHHHHHHSBTTSCTTCEEEEEECCC---STTCS
T ss_pred ccEEEEEEeCC----CCCCEEEEeCCCCCCCCCCHHHHHHHHHhccHHHHHHhhcccCCCcceeEEEEECCC---CCCCC
Confidence 46899999997 99999999876 233 3 3688999999884 2 899999873 34578
Q ss_pred eEEEEecCCCccCCCCchHH
Q 034019 66 FRLRWFTPVAEVSFSFYNYK 85 (106)
Q Consensus 66 ~~vR~FTp~~Ei~~cGHatv 85 (106)
+++|||||.+|+|||||+|+
T Consensus 116 ~~vRiFnpdGe~~mCGHgTi 135 (414)
T 1w61_A 116 LGIVFMDTGGYLNMCGHNSI 135 (414)
T ss_dssp EEEEEEESSCCCSCCHHHHH
T ss_pred EEEEEECCCCchhcCcCcHH
Confidence 99999999999999999987
No 13
>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A*
Probab=97.81 E-value=3.7e-05 Score=60.86 Aligned_cols=68 Identities=10% Similarity=0.070 Sum_probs=51.6
Q ss_pred ccCCCCCCCeeEEEEcCC----CCCHHHHHHHHHH---hCCceeEEEecCCCCCCCCCceEEEEecCC-CccCCCCchHH
Q 034019 14 FTDSAFKGNPAAVCLLEE----DRDEEWLQAVASE---FNISQTCYLTRLTAADSPNPRFRLRWFTPV-AEVSFSFYNYK 85 (106)
Q Consensus 14 Ft~~~f~GNPaaVv~~~~----~l~~~~mq~IA~e---~n~sETaFv~~~~~~~~~~~~~~vR~FTp~-~Ei~~cGHatv 85 (106)
|++=.-.||=--|+...+ .+++++.++|+.+ .|..-..||.++ ...+++++|||+|. .|.++|||++.
T Consensus 29 F~KmhG~GNDFvviD~~~~~~~~~~~~~~~~lcdR~~GIGaDGll~v~~~----~~~aD~~mr~FN~DGSEaemCGNGtR 104 (317)
T 3ejx_A 29 FVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPG----VNGTDYAMRIFNSDGSEPEMCGNGVR 104 (317)
T ss_dssp EEEEEETTEEEEEEECTTCSSCSSCHHHHHHHTCTTTSSCCSEEEEEEEC----STTCSEEEEEEETTSCCCSCCHHHHH
T ss_pred EEEEcCCCCcEEEEeCCCccccCCCHHHHHHhhccCCCCCCCeEEEEcCC----CCCCCEEEEEEcCCCCeeccCccHHH
Confidence 555556788777665432 3578888999865 467788899876 23578999999998 79999999975
No 14
>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid biosynthesis, isomerase, lysine biosy; 2.60A {Mycobacterium tuberculosis}
Probab=97.60 E-value=0.00024 Score=55.24 Aligned_cols=87 Identities=7% Similarity=0.004 Sum_probs=54.7
Q ss_pred ccCCCCCCCeeEEEEcCC---CCCHHHHHHHHHH-hC--CceeEEEecCCC-----------CCCCCCceEEEEecCC-C
Q 034019 14 FTDSAFKGNPAAVCLLEE---DRDEEWLQAVASE-FN--ISQTCYLTRLTA-----------ADSPNPRFRLRWFTPV-A 75 (106)
Q Consensus 14 Ft~~~f~GNPaaVv~~~~---~l~~~~mq~IA~e-~n--~sETaFv~~~~~-----------~~~~~~~~~vR~FTp~-~ 75 (106)
|++=.-.||==-|+...+ .+++++-++|+.+ ++ --=-.+|.++.. +..+.+++++|||+|. .
T Consensus 4 F~K~hG~GNDFvvid~~~~~~~~~~~~~~~lcdR~~GIGaDGli~v~~~~~~~~~~~~~~~~~~~~~ad~~mr~fN~DGS 83 (290)
T 3fve_A 4 FAKGHGTQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDSLPEGVRVTDWYMDYRNADGS 83 (290)
T ss_dssp EEEEESSSCEEEEEECTTCCSCCCHHHHHHHHCTTTSCCCSEEEEEEEHHHHHHTTSCSSCCTTCCTTSEEEEEEETTSC
T ss_pred EEEEEeCCCcEEEEECCCCcCCCCHHHHHHhcccCCCCCCCEEEEEeccccccccccccccccCCCCCCEEEEEECCCCC
Confidence 444455677666555432 3578888888865 43 445568876420 0123478999999997 6
Q ss_pred ccCCCCchHH--H-HHHHc----CCeEEEeee
Q 034019 76 EVSFSFYNYK--L-WMKLF----GSVLELDDL 100 (106)
Q Consensus 76 Ei~~cGHatv--a-w~~~~----~~~~~~~~~ 100 (106)
|+++|||++. | |+... .+.+.++|+
T Consensus 84 EaemCGNg~Rc~a~~l~~~g~~~~~~~~ieT~ 115 (290)
T 3fve_A 84 AAQMCGNGVRVFAHYLRASGLEVRDEFVVGSL 115 (290)
T ss_dssp BCCTTCTTHHHHHHHHHHTTSCCCSEEEEECT
T ss_pred ccccccchHHHHHHHHHHhCCCCCceEEEEeC
Confidence 9999999975 3 33222 235666654
No 15
>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae}
Probab=81.80 E-value=6 Score=29.61 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=41.2
Q ss_pred CCCCeeEEEEcCC-------CCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecC--C-CccCCCCchH
Q 034019 19 FKGNPAAVCLLEE-------DRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTP--V-AEVSFSFYNY 84 (106)
Q Consensus 19 f~GNPaaVv~~~~-------~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp--~-~Ei~~cGHat 84 (106)
..|||-.||..++ .++-+.+.++.++.+..-+.+..+... +.+..++++|.|.| . .|=|-||-+.
T Consensus 157 ~~G~ph~vv~v~~~~~l~~l~p~~~~~~~~~~~~~~~gv~v~~~~~~-~~~~~~~~~R~f~p~~Gv~EdpatGSaa 231 (300)
T 1ym5_A 157 HTGPEWIVALVEDAETCFNANPNFAMLAHQTKQNDHVGIILAGPKKE-AAIKNSYEMRAFAPVINVYEDPVCGSGS 231 (300)
T ss_dssp ESSSEEEEEECSCHHHHHHCCCCHHHHHHHHHHHTCCEEEEEEECTT-CSSTTEEEEEEEEGGGTEEEESSCHHHH
T ss_pred EcCCCEEEEEECCHHHHHhCCCCHHHHHHHHhhcCCcEEEEEEecCC-CCCCceEEEEecccccCCCCCCcchHHH
Confidence 3699999988764 224566666766665433332222210 01245799999999 3 6999999874
No 16
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiot biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A
Probab=80.81 E-value=3.9 Score=30.67 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=42.5
Q ss_pred CCCCeeEEEEcCC-------CCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecC--C-CccCCCCchH
Q 034019 19 FKGNPAAVCLLEE-------DRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTP--V-AEVSFSFYNY 84 (106)
Q Consensus 19 f~GNPaaVv~~~~-------~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp--~-~Ei~~cGHat 84 (106)
..|||-.||..++ .++-+.+.++.++.|.. -+.+.... .+..++++|.|.| . .|=|-||-++
T Consensus 168 ~~G~ph~vv~v~~~~~l~~l~p~~~~~~~~~~~~~~~-~v~v~~~~---~~~~~~~~R~f~p~~Gv~EdpacGSaa 239 (307)
T 1qya_A 168 TTGHSKVMIPLKPEVDIDALSPDLNALTAISKKIGCN-GFFPFQIR---PGKNETDGRMFSPAIGIVEDPVTGNAN 239 (307)
T ss_dssp ESSSCEEEEEBCTTSCGGGCCCCHHHHHHHHHHHTCC-CEEEEEEC---TTSSEEEECEEEGGGTEEEESSCHHHH
T ss_pred eCCCCEEEEEECCHHHHhhCCCCHHHHHHHHhhcCCc-EEEEEEEc---CCCCeEEEEecCCcCCCCCCCCcccch
Confidence 3699999998764 22557777787778863 33333210 1235799999999 3 6999999884
No 17
>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex, covalently bound inhibitor, isomer; HET: ZDP; 1.35A {Haemophilus influenzae} SCOP: d.21.1.1 d.21.1.1 PDB: 1gqz_A* 2gkj_A* 2q9h_A* 2q9j_A 1bwz_A
Probab=79.61 E-value=7.9 Score=28.40 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=40.9
Q ss_pred CCCCeeEEEEcCCCCCHHHHHHHHHHhC----Cc---eeEEEecCCCCCCCCCceEEEEecCC-CccCCCCchHH---HH
Q 034019 19 FKGNPAAVCLLEEDRDEEWLQAVASEFN----IS---QTCYLTRLTAADSPNPRFRLRWFTPV-AEVSFSFYNYK---LW 87 (106)
Q Consensus 19 f~GNPaaVv~~~~~l~~~~mq~IA~e~n----~s---ETaFv~~~~~~~~~~~~~~vR~FTp~-~Ei~~cGHatv---aw 87 (106)
..|||=.||..++ ++...+.++...+. ++ -..|+... ...++++|+|-|. .|=|-||-++. +|
T Consensus 154 ~~G~~h~vv~v~~-~~~~~l~~~~~~~~~~~~~p~~~~v~~~~~~-----~~~~~~~R~f~~Gv~Ed~acGSg~~A~a~~ 227 (274)
T 2gke_A 154 SMGNPHCVVQVDD-IQTANVEQLGPLLESHERFPERVNAGFMQII-----NKEHIKLRVYERGAGETQACGSGACAAVAV 227 (274)
T ss_dssp ESSSEEEEEECSC-TTTSCHHHHHHHHHTCTTCTTCCEEEEEEEE-----ETTEEEEEEEETTTEECSCCHHHHHHHHHH
T ss_pred ECCcCEEEEEeCC-CChhhHHHHhHHHhhCccCCCCcEEEEEEEe-----CCCEEEEEEECCCCCCCCCchHHHHHHHHH
Confidence 4799999988764 22212333333322 11 23354433 1246999999996 79999999853 46
Q ss_pred HHHcC
Q 034019 88 MKLFG 92 (106)
Q Consensus 88 ~~~~~ 92 (106)
+...|
T Consensus 228 ~~~~g 232 (274)
T 2gke_A 228 GIMQG 232 (274)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 65554
No 18
>2azp_A Hypothetical protein PA1268; PA1268,APC5861,sulfur SAD, structural genomics, PSI, protein structure initiative; 2.13A {Pseudomonas aeruginosa}
Probab=78.59 E-value=11 Score=28.34 Aligned_cols=59 Identities=17% Similarity=-0.011 Sum_probs=37.6
Q ss_pred CCCCeeEEEEcCC-CC---CHHHHHHHHHHh-------C--C-----ceeEEEecCCCCCCCCCceEEEEe--cCC---C
Q 034019 19 FKGNPAAVCLLEE-DR---DEEWLQAVASEF-------N--I-----SQTCYLTRLTAADSPNPRFRLRWF--TPV---A 75 (106)
Q Consensus 19 f~GNPaaVv~~~~-~l---~~~~mq~IA~e~-------n--~-----sETaFv~~~~~~~~~~~~~~vR~F--Tp~---~ 75 (106)
..|||-+||..++ .+ +.+.+.++.+++ + . -+-+.+..+ ..++++|.| .|. .
T Consensus 161 ~~G~~~~vv~v~~~~l~p~d~~~l~~l~~~i~~~~~~~~~~~p~~~nv~~v~v~~~------~~~~~~R~fv~~p~~Gv~ 234 (318)
T 2azp_A 161 WGGNWFFLVAGHGQRLAGDNLDALTAYTVAVQQALDDQDIRGEDGGAIDHIELFAD------DPHADSRNFVLCPGKAYD 234 (318)
T ss_dssp ESSSEEEEEESCCCCCSTTCHHHHHHHHHHHHHHHHHTTCBCTTSCBCCEEEEEEE------ETTEEEEEEEECTTSCBC
T ss_pred eCCceEEEEECCCcccccccHHHHHHHHHHHHHHHhhcCCCcCCcCceEEEEEEeC------CCCccEEEEEEeCCCccc
Confidence 4799999998764 22 556777776654 3 1 122223221 135899999 675 5
Q ss_pred ccCCCCchH
Q 034019 76 EVSFSFYNY 84 (106)
Q Consensus 76 Ei~~cGHat 84 (106)
| |-||-++
T Consensus 235 E-~acGSg~ 242 (318)
T 2azp_A 235 R-SPCGTGT 242 (318)
T ss_dssp S-SCCHHHH
T ss_pred c-CCCHHHH
Confidence 8 9999985
No 19
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=67.49 E-value=2.6 Score=26.50 Aligned_cols=20 Identities=10% Similarity=-0.092 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHHhCCceeE
Q 034019 32 DRDEEWLQAVASEFNISQTC 51 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sETa 51 (106)
-++.++...||+++||+|+.
T Consensus 27 YPs~~er~~LA~~tgLte~q 46 (76)
T 2ecc_A 27 WARREDYQKLEQITGLPRPE 46 (76)
T ss_dssp SCCHHHHHHHHHHTCCCHHH
T ss_pred CCCHHHHHHHHHHHCcCHHH
Confidence 46899999999999999874
No 20
>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis}
Probab=66.63 E-value=7.1 Score=29.06 Aligned_cols=63 Identities=14% Similarity=0.099 Sum_probs=37.5
Q ss_pred CCCeeEEEEcCC-------CCCHHHHHHHHHHhCCceeEEEecCCCCCCCCCceEEEEecCC----CccCCCCchH
Q 034019 20 KGNPAAVCLLEE-------DRDEEWLQAVASEFNISQTCYLTRLTAADSPNPRFRLRWFTPV----AEVSFSFYNY 84 (106)
Q Consensus 20 ~GNPaaVv~~~~-------~l~~~~mq~IA~e~n~sETaFv~~~~~~~~~~~~~~vR~FTp~----~Ei~~cGHat 84 (106)
.|||-.||..++ .++-+.+.++.++.|. +.+++.-... .+...++++|.|.|. .|=|-||-+.
T Consensus 160 ~G~ph~vv~v~~~~~l~~~~p~~~~~~~~~~~~~~-~~v~v~~~~~-~~~~~~~~~R~f~p~~~Gv~EdpatGSa~ 233 (299)
T 3edn_A 160 TGNWTVIVPVKNLDVCERMKPNNEVFPSVLKEIPN-ASIHPICLET-YDEKVHMHGRHFSSAYAGTIEDPVTGTAS 233 (299)
T ss_dssp SSSEEEEEEBSCHHHHHHCCCCGGGHHHHCSSSTT-CEEEEEESCC-SSTTCSEEECEECCTTSSCSEESSCHHHH
T ss_pred cCCCeEEEEeCCHHHHhhCCCCHHHHHHHHhhcCc-cEEEEEEecC-CCCCccEEEeccccccCCCcCCCcccHHH
Confidence 599999998764 1122334444444554 3344432110 012457999999952 5999999874
No 21
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=66.22 E-value=3 Score=25.77 Aligned_cols=20 Identities=5% Similarity=-0.021 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHhCCceeE
Q 034019 32 DRDEEWLQAVASEFNISQTC 51 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sETa 51 (106)
-++.++...||+++||||+.
T Consensus 28 YPs~~er~eLA~~tgLt~~q 47 (66)
T 3nau_A 28 FPDDAEVYRLIEVTGLARSE 47 (66)
T ss_dssp SCCHHHHHHHHHHHCCCHHH
T ss_pred CCCHHHHHHHHHHhCcCHHH
Confidence 46899999999999999863
No 22
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=63.80 E-value=3.4 Score=24.02 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.++++.||+++|++|+
T Consensus 30 yp~~~~r~~La~~~~L~~~ 48 (64)
T 1du6_A 30 YPSEEAKEELAKKCGITVS 48 (64)
T ss_dssp CCCHHHHHHHHHHHTSCHH
T ss_pred CCCHHHHHHHHHHHCcCHH
Confidence 3689999999999999875
No 23
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=62.88 E-value=3.8 Score=23.49 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.+++..||+++|++|+
T Consensus 25 yp~~~~r~~La~~~gl~~~ 43 (60)
T 1k61_A 25 YLDTKGLENLMKNTSLSRI 43 (60)
T ss_dssp CCCHHHHHHHHHHHCCCHH
T ss_pred CcCHHHHHHHHHHHCcCHH
Confidence 4689999999999999875
No 24
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=62.58 E-value=3.8 Score=23.55 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.++...||+++|++|+
T Consensus 29 yp~~~~r~~La~~~~l~~~ 47 (61)
T 1akh_A 29 SLNSKEKEEVAKKCGITPL 47 (61)
T ss_dssp SCCHHHHHHHHHHHTSCHH
T ss_pred CcCHHHHHHHHHHHCcCHH
Confidence 3688999999999999875
No 25
>2otn_A Diaminopimelate epimerase; DAP, lysine ME lanthionine, isomerase; 2.40A {Bacillus anthracis str}
Probab=62.33 E-value=7.3 Score=29.29 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=34.5
Q ss_pred CCCCeeEEEEcCCCCCHHHHHHHHHHhC----Cc---eeEEEecCCCCCCCCCceEEEEecCC-CccCCCCchH
Q 034019 19 FKGNPAAVCLLEEDRDEEWLQAVASEFN----IS---QTCYLTRLTAADSPNPRFRLRWFTPV-AEVSFSFYNY 84 (106)
Q Consensus 19 f~GNPaaVv~~~~~l~~~~mq~IA~e~n----~s---ETaFv~~~~~~~~~~~~~~vR~FTp~-~Ei~~cGHat 84 (106)
..|||-.||..++. +..++.++...+. ++ -.-|+... +..++++|+|.|. .|-|-||-++
T Consensus 183 ~~G~ph~vv~v~~~-~~~~l~~l~p~~~~~~~~~~~~nv~~v~v~-----~~~~~~~R~fe~Gv~Ed~acGSg~ 250 (308)
T 2otn_A 183 SMGNPHAVIFVDDV-EQAPLTTLGPVLETHEMFPERVNVEFIEIL-----NEEEMNFRVWERGSGVTQACGTGA 250 (308)
T ss_dssp ESSSEEEEEECSCG-GGSCTTTHHHHHHTCTTCTTCCEEEEEEEE-----ETTEEEEEEECSSSCBCSCCHHHH
T ss_pred eCCCCcEEEEcCCc-CHHHHHHHHHHHhhCccCCCCeeEEEEEEe-----CCCeEEEEEeCCCCCCCCCCHHHH
Confidence 36999999987641 1111122222211 11 22244322 1246999999996 7999999985
No 26
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=61.65 E-value=4 Score=24.79 Aligned_cols=19 Identities=16% Similarity=0.344 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.+++..||+++|++|.
T Consensus 25 yp~~~~r~~LA~~l~Lter 43 (64)
T 1x2m_A 25 HPDEKRLEGLSKQLDWDVR 43 (64)
T ss_dssp SCCHHHHHHHHHHHCSCHH
T ss_pred CcCHHHHHHHHHHhCCCHH
Confidence 3688999999999999985
No 27
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=60.63 E-value=4.4 Score=23.02 Aligned_cols=19 Identities=11% Similarity=0.022 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.++...||+++|++|+
T Consensus 24 yp~~~~r~~La~~l~l~~~ 42 (58)
T 1ig7_A 24 YLSIAERAEFSSSLSLTET 42 (58)
T ss_dssp CCCHHHHHHHHHHTTCCHH
T ss_pred CcCHHHHHHHHHHHCcCHH
Confidence 3688999999999999875
No 28
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=58.88 E-value=5 Score=22.83 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.++...||+++|++|.
T Consensus 21 yp~~~~r~~LA~~l~l~~~ 39 (56)
T 3a03_A 21 YLASAERAALAKALRMTDA 39 (56)
T ss_dssp SCCHHHHHHHHHHHTCCHH
T ss_pred CcCHHHHHHHHHHhCcCHH
Confidence 3688999999999999875
No 29
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=58.71 E-value=4.8 Score=23.10 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.++...||+++|++|+
T Consensus 25 yp~~~~r~~La~~l~l~~~ 43 (60)
T 1jgg_A 25 YVSRPRRCELAAQLNLPES 43 (60)
T ss_dssp CCCHHHHHHHHHHHTSCHH
T ss_pred CCCHHHHHHHHHHHCcCHH
Confidence 3688999999999999875
No 30
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=57.29 E-value=5.3 Score=22.93 Aligned_cols=19 Identities=11% Similarity=0.059 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.++...||+++|++|.
T Consensus 23 yp~~~~r~~La~~l~l~~~ 41 (60)
T 3a02_A 23 YPDVFTREELAMKIGLTEA 41 (60)
T ss_dssp SCCHHHHHHHHHHHTSCHH
T ss_pred CcCHHHHHHHHHHHCcCHH
Confidence 3688999999999999875
No 31
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=55.05 E-value=6.2 Score=22.69 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.++...||+++|++|.
T Consensus 27 yp~~~~r~~La~~l~l~~~ 45 (61)
T 2hdd_A 27 YLTERRRQQLSSELGLNEA 45 (61)
T ss_dssp SCCHHHHHHHHHHHTCCHH
T ss_pred CCCHHHHHHHHHHHCcCHH
Confidence 3688999999999999875
No 32
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=54.75 E-value=6.3 Score=22.87 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++..+...||+++|++|+
T Consensus 27 yp~~~~r~~LA~~l~l~~~ 45 (63)
T 2h1k_A 27 YISRPRRVELAVMLNLTER 45 (63)
T ss_dssp SCCHHHHHHHHHHHTCCHH
T ss_pred CcCHHHHHHHHHHhCcCHH
Confidence 3688999999999999875
No 33
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=54.63 E-value=6.4 Score=22.04 Aligned_cols=19 Identities=16% Similarity=0.064 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++..++..||.++|++|.
T Consensus 26 yp~~~~r~~La~~l~l~~~ 44 (58)
T 3rkq_A 26 YLSAPERDQLASVLKLTST 44 (58)
T ss_dssp SCCHHHHHHHHHHHTCCHH
T ss_pred CCCHHHHHHHHHHhCcCHH
Confidence 3688999999999999874
No 34
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=54.15 E-value=6.4 Score=23.05 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.++...||+++|++|.
T Consensus 25 yp~~~~r~~La~~l~l~~~ 43 (67)
T 2k40_A 25 YPGIDILEDLAQKLNLELD 43 (67)
T ss_dssp SCCHHHHHHHHHHHTCCHH
T ss_pred CCCHHHHHHHHHHHCcCHH
Confidence 3688999999999999875
No 35
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=54.12 E-value=6.3 Score=23.02 Aligned_cols=19 Identities=11% Similarity=0.038 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.++...||+++|++|+
T Consensus 27 yp~~~~r~~La~~l~l~~~ 45 (66)
T 1bw5_A 27 RPDALMKEQLVEMTGLSPR 45 (66)
T ss_dssp CCCHHHHHHHHHHHTSCHH
T ss_pred CcCHHHHHHHHHHHCcCHH
Confidence 3688999999999999875
No 36
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.31 E-value=6.7 Score=23.16 Aligned_cols=19 Identities=11% Similarity=0.087 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.+++..||+++|++|.
T Consensus 31 yp~~~~r~~LA~~l~l~~~ 49 (70)
T 2dmu_A 31 YPDVGTREQLARKVHLREE 49 (70)
T ss_dssp SCCHHHHHHHHHHHTCCHH
T ss_pred CCCHHHHHHHHHHHCCCHH
Confidence 3688999999999999875
No 37
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=53.16 E-value=6.6 Score=23.40 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.+++..||+++|++|+
T Consensus 28 yP~~~~r~~La~~~~L~~~ 46 (73)
T 1puf_B 28 YPSEEAKEELAKKCGITVS 46 (73)
T ss_dssp CCCHHHHHHHHHHHTSCHH
T ss_pred CcCHHHHHHHHHHHCcCHH
Confidence 3689999999999999875
No 38
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=52.89 E-value=6.9 Score=23.31 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.++...||+++|++|.
T Consensus 26 yp~~~~r~~LA~~l~l~~~ 44 (72)
T 1uhs_A 26 HPDPTTLCLIAAEAGLTEE 44 (72)
T ss_dssp SCCHHHHHHHHHHHTCCHH
T ss_pred CCCHHHHHHHHHHHCcCHH
Confidence 4688999999999999885
No 39
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.49 E-value=7.1 Score=23.14 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.+++..||+++|++|+
T Consensus 27 yp~~~~r~~LA~~l~L~e~ 45 (64)
T 2e19_A 27 QPSAEELSKIADSVNLPLD 45 (64)
T ss_dssp SCCHHHHHHHHHHHTCCHH
T ss_pred CcCHHHHHHHHHHhCcChh
Confidence 3688899999999999985
No 40
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=52.33 E-value=7.1 Score=23.25 Aligned_cols=19 Identities=16% Similarity=0.157 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.+++..||+++|++|+
T Consensus 34 yp~~~~r~~La~~~~L~~~ 52 (73)
T 1x2n_A 34 YPTEDEKKQIAAQTNLTLL 52 (73)
T ss_dssp CCCHHHHHHHHHHHTCCHH
T ss_pred CCCHHHHHHHHHHHCcCHH
Confidence 3689999999999999875
No 41
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=52.31 E-value=7.3 Score=22.45 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++..+...||+++|++|+
T Consensus 27 yp~~~~r~~LA~~l~l~~~ 45 (62)
T 2vi6_A 27 YLSLQQMQELSSILNLSYK 45 (62)
T ss_dssp CCCHHHHHHHHHHHTCCHH
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 3688899999999999885
No 42
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=52.30 E-value=6.9 Score=23.58 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHhCCcee
Q 034019 33 RDEEWLQAVASEFNISQT 50 (106)
Q Consensus 33 l~~~~mq~IA~e~n~sET 50 (106)
++.+++..||+++|++|.
T Consensus 42 p~~~~r~~La~~l~l~~~ 59 (80)
T 2da3_A 42 PTRKMLDHIAHEVGLKKR 59 (80)
T ss_dssp CCHHHHHHHHHHHTSCHH
T ss_pred CCHHHHHHHHHHHCcCHH
Confidence 578899999999999885
No 43
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=52.28 E-value=6.8 Score=23.09 Aligned_cols=19 Identities=5% Similarity=0.199 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.+++..||+++|++|+
T Consensus 31 yp~~~~r~~LA~~l~l~~~ 49 (70)
T 2da2_A 31 YPKDDEFEQLSNLLNLPTR 49 (70)
T ss_dssp SCCHHHHHHHHHHSCCCHH
T ss_pred CcCHHHHHHHHHHhCCCHH
Confidence 3688999999999999875
No 44
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=51.98 E-value=7 Score=25.02 Aligned_cols=20 Identities=10% Similarity=0.106 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHhCCceeE
Q 034019 32 DRDEEWLQAVASEFNISQTC 51 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sETa 51 (106)
-++.+++..||+++||+|+-
T Consensus 35 yp~~~~r~~LA~~lgLte~q 54 (89)
T 2ecb_A 35 VLTDEELNRLRAQTKLTRRE 54 (89)
T ss_dssp SCCHHHHHHHHHHTCCCHHH
T ss_pred CCCHHHHHHHHHHhCcChHH
Confidence 36889999999999999863
No 45
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=51.76 E-value=7.3 Score=24.10 Aligned_cols=19 Identities=26% Similarity=0.136 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.++++.||+++|++|+
T Consensus 34 YPs~~~r~~LA~~~gLs~~ 52 (83)
T 2dmn_A 34 YPSEEEKQMLSEKTNLSLL 52 (83)
T ss_dssp CCCHHHHHHHHHHHCCCHH
T ss_pred CCCHHHHHHHHHHHCcCHH
Confidence 3689999999999999875
No 46
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=51.11 E-value=7.6 Score=22.96 Aligned_cols=19 Identities=5% Similarity=0.053 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.++...||+++|++|.
T Consensus 31 yp~~~~r~~LA~~l~l~~~ 49 (70)
T 2cra_A 31 FITKDKRRKISAATSLSER 49 (70)
T ss_dssp SCCHHHHHHHHHHTCCCHH
T ss_pred CCCHHHHHHHHHHHCCCHH
Confidence 3688999999999999885
No 47
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.42 E-value=7.4 Score=23.03 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.+++..||+++|++|+
T Consensus 31 yp~~~~r~~La~~l~l~~~ 49 (70)
T 2djn_A 31 YLALPERAELAASLGLTQT 49 (70)
T ss_dssp SCCHHHHHHHHHHSSCCHH
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 3688999999999999885
No 48
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=50.01 E-value=7.1 Score=25.25 Aligned_cols=18 Identities=11% Similarity=0.088 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHhCCcee
Q 034019 33 RDEEWLQAVASEFNISQT 50 (106)
Q Consensus 33 l~~~~mq~IA~e~n~sET 50 (106)
++.++++.||+++|++|+
T Consensus 33 Ps~~ek~~LA~~tgLt~~ 50 (89)
T 2lk2_A 33 PSEQEKALLSQQTHLSTL 50 (89)
T ss_dssp CCHHHHHHHHHHSSSCHH
T ss_pred CCHHHHHHHHHHHCcCHH
Confidence 589999999999999875
No 49
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=49.96 E-value=8 Score=23.40 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++..+...||+++|++|+
T Consensus 33 yp~~~~r~~LA~~l~l~e~ 51 (72)
T 2cqx_A 33 YPDEKRLKGLSKQLDWSVR 51 (72)
T ss_dssp SCCHHHHHHHHHHTTCCHH
T ss_pred CcCHHHHHHHHHHhCCChh
Confidence 3688899999999999985
No 50
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=49.57 E-value=8.3 Score=22.81 Aligned_cols=19 Identities=11% Similarity=0.010 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.+++..||+++|++|+
T Consensus 31 yp~~~~r~~La~~l~l~~~ 49 (70)
T 2e1o_A 31 YLSPPERKRLAKMLQLSER 49 (70)
T ss_dssp SCCHHHHHHHHHHTTCCHH
T ss_pred CcCHHHHHHHHHHHCCCHH
Confidence 3588899999999999875
No 51
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.33 E-value=8.3 Score=23.29 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.+++..||+++|++|.
T Consensus 31 yp~~~~r~~La~~l~l~~~ 49 (80)
T 2dmq_A 31 NPDAKDLKQLAQKTGLTKR 49 (80)
T ss_dssp SCCHHHHHHHHHHTCCCHH
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 3688999999999999885
No 52
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=49.22 E-value=8.4 Score=22.70 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++..+...||+++|++|+
T Consensus 26 yp~~~~r~~LA~~l~l~~~ 44 (68)
T 1ftt_A 26 YLSAPEREHLASMIHLTPT 44 (68)
T ss_dssp SCCHHHHHHHHHHHTSCHH
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 3688999999999999885
No 53
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=49.14 E-value=8.4 Score=22.70 Aligned_cols=19 Identities=5% Similarity=0.127 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++..+...||+++|++|+
T Consensus 26 yp~~~~r~~La~~l~l~~~ 44 (68)
T 1zq3_P 26 YLTAPRLADLSAKLALGTA 44 (68)
T ss_dssp SCCHHHHHHHHHHHTSCHH
T ss_pred CcCHHHHHHHHHHhCcCHH
Confidence 3688999999999999875
No 54
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=48.42 E-value=8.1 Score=23.85 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHhCCceeE
Q 034019 32 DRDEEWLQAVASEFNISQTC 51 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sETa 51 (106)
-++..+.+.||+++|++|+.
T Consensus 45 yp~~~~r~~La~~lgL~~~~ 64 (80)
T 1wh5_A 45 RQDDEVIQRFCQETGVPRQV 64 (80)
T ss_dssp TTTHHHHHHHHHHSCCCHHH
T ss_pred CcCHHHHHHHHHHhCCCccc
Confidence 46888999999999999864
No 55
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=47.85 E-value=10 Score=23.86 Aligned_cols=20 Identities=10% Similarity=0.353 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHhCCceeE
Q 034019 32 DRDEEWLQAVASEFNISQTC 51 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sETa 51 (106)
.++.+..+.||++++|+|.+
T Consensus 32 yPd~~~r~~La~~tGL~~~~ 51 (71)
T 1wi3_A 32 YPDQEAIHTLSAQLDLPKHT 51 (71)
T ss_dssp CCCHHHHHHHHHHSCCCHHH
T ss_pred CCCHHHHHHHHHHhCCCHHH
Confidence 46899999999999999864
No 56
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=47.84 E-value=8.9 Score=22.89 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++..+...||+++|++|.
T Consensus 27 yp~~~~r~~LA~~~~l~~~ 45 (73)
T 2hi3_A 27 HPDPTTLCLIAAEAGLTEE 45 (73)
T ss_dssp SCCHHHHHHHHHHHTSCHH
T ss_pred CCCHHHHHHHHHHHCcCHH
Confidence 4688999999999999885
No 57
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.85 E-value=9.7 Score=23.13 Aligned_cols=18 Identities=17% Similarity=0.030 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHhCCcee
Q 034019 33 RDEEWLQAVASEFNISQT 50 (106)
Q Consensus 33 l~~~~mq~IA~e~n~sET 50 (106)
++..++..||+++|++|+
T Consensus 42 p~~~~r~~LA~~l~L~~~ 59 (80)
T 2dmt_A 42 LSTPDRIDLAESLGLSQL 59 (80)
T ss_dssp CCHHHHHHHHHHHCCCHH
T ss_pred CCHHHHHHHHHHhCCCHH
Confidence 578889999999999885
No 58
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=46.73 E-value=9.6 Score=23.08 Aligned_cols=19 Identities=11% Similarity=0.073 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++..+...||+++|++|+
T Consensus 28 yp~~~~r~~LA~~l~Lte~ 46 (69)
T 2l9r_A 28 YLSAPERAHLAKNLKLTET 46 (69)
T ss_dssp CCCHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHhCCChh
Confidence 3588899999999999986
No 59
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.47 E-value=10 Score=22.88 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++..+...||+++|++|+
T Consensus 31 yp~~~~r~~LA~~l~l~~~ 49 (75)
T 2da5_A 31 LPLDEELDRLRSETKMTRR 49 (75)
T ss_dssp SCCHHHHHHHHHHHCCCHH
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 3578889999999999985
No 60
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=46.36 E-value=11 Score=22.53 Aligned_cols=19 Identities=11% Similarity=0.099 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++..+...||+++|++|+
T Consensus 31 yp~~~~r~~LA~~l~l~~~ 49 (73)
T 2l7z_A 31 FITKDKRRRISATTNLSER 49 (73)
T ss_dssp CCCHHHHHHHHHHHTSCSH
T ss_pred CcCHHHHHHHHHHHCCCHH
Confidence 3688999999999999885
No 61
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A
Probab=45.61 E-value=24 Score=26.26 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=32.6
Q ss_pred CCCeeEEEEcCCCCCHHHHHHHH----HHhCCcee-E-EEecCCCCCCCCCceEEEEecC--C-CccCCCCchH
Q 034019 20 KGNPAAVCLLEEDRDEEWLQAVA----SEFNISQT-C-YLTRLTAADSPNPRFRLRWFTP--V-AEVSFSFYNY 84 (106)
Q Consensus 20 ~GNPaaVv~~~~~l~~~~mq~IA----~e~n~sET-a-Fv~~~~~~~~~~~~~~vR~FTp--~-~Ei~~cGHat 84 (106)
.|||-.||..++ .+...++. +--.++++ + |.... + .++++|.|.| . .|=|-||-+.
T Consensus 171 ~G~ph~vv~v~~---~~~l~~l~p~~~~~~~~~~~~v~~~~~~----~--~~~~~R~f~p~~Gv~EdpatGSaa 235 (298)
T 1xub_A 171 NGPRHVFVGLPS---IDALSALHPDHRALSNFHDMAINCFAGA----G--RRWRSRMFSPAYGVVEDAATGSAA 235 (298)
T ss_dssp SSSEEEEEECSS---HHHHHHCCCCHHHHTTSCSCEEEEEEEE----T--TEEEEEEEBGGGTBSSCSCCHHHH
T ss_pred CCCCEEEEEECC---HHHHHhCCCCHHHHHhhhccEEEEEEcC----C--CCEEEEeCccccCCCCcchhhHHH
Confidence 699999998764 12221110 00112222 2 33332 1 2499999999 3 7999999984
No 62
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=45.31 E-value=10 Score=22.98 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHhCCcee
Q 034019 33 RDEEWLQAVASEFNISQT 50 (106)
Q Consensus 33 l~~~~mq~IA~e~n~sET 50 (106)
++..++..||+++|++|+
T Consensus 43 p~~~~r~~LA~~l~l~~~ 60 (81)
T 1fjl_A 43 PDIYTREELAQRTNLTEA 60 (81)
T ss_dssp CCHHHHHHHHHHHTCCHH
T ss_pred CCHHHHHHHHHHHCcCHH
Confidence 578889999999999875
No 63
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=45.29 E-value=6.5 Score=23.19 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHhCCcee
Q 034019 33 RDEEWLQAVASEFNISQT 50 (106)
Q Consensus 33 l~~~~mq~IA~e~n~sET 50 (106)
++.+++..||.++|++|+
T Consensus 32 p~~~~r~~LA~~l~l~~~ 49 (70)
T 2da1_A 32 PSEEQIKEMADKSGLPQK 49 (70)
T ss_dssp CCTTHHHHHHHHHCCCHH
T ss_pred CCHHHHHHHHHHhCCCHH
Confidence 577789999999999875
No 64
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=45.09 E-value=10 Score=23.24 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.+++..||+++|++|+
T Consensus 28 yp~~~~r~~La~~~~l~~~ 46 (87)
T 1b72_B 28 YPSEEAKEELAKKCGITVS 46 (87)
T ss_dssp CCCHHHHHHHHHHHTSCHH
T ss_pred CCCHHHHHHHHHHHCcCHH
Confidence 3689999999999999875
No 65
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=45.03 E-value=11 Score=22.76 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHhCCcee
Q 034019 33 RDEEWLQAVASEFNISQT 50 (106)
Q Consensus 33 l~~~~mq~IA~e~n~sET 50 (106)
++..+...||+++|++|+
T Consensus 38 p~~~~r~~LA~~l~l~~~ 55 (77)
T 1puf_A 38 LTRDRRYEVARLLNLTER 55 (77)
T ss_dssp CCHHHHHHHHHHHTCCHH
T ss_pred CCHHHHHHHHHHHCcCHH
Confidence 578889999999999875
No 66
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=44.73 E-value=11 Score=22.88 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.+++..||+++|++|+
T Consensus 31 yp~~~~r~~La~~l~l~~~ 49 (80)
T 2dms_A 31 YPDIFMREEVALKINLPES 49 (80)
T ss_dssp SCCHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHCcCHH
Confidence 3688899999999999886
No 67
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=43.67 E-value=11 Score=22.81 Aligned_cols=19 Identities=11% Similarity=0.102 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++..++..||+++|++|+
T Consensus 31 yp~~~~r~~LA~~l~l~~~ 49 (80)
T 2cue_A 31 YPDVFARERLAAKIDLPEA 49 (80)
T ss_dssp SCCHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 3688999999999999875
No 68
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=42.82 E-value=12 Score=22.53 Aligned_cols=19 Identities=16% Similarity=0.018 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++..+...||+++|++|.
T Consensus 33 yp~~~~r~~La~~l~l~~~ 51 (77)
T 1nk2_P 33 YLSAPEREHLASLIRLTPT 51 (77)
T ss_dssp CCCHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 3588899999999999875
No 69
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=42.41 E-value=12 Score=23.00 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.+++..||+++|++|+
T Consensus 54 yP~~~~r~~La~~~gL~~~ 72 (87)
T 1mnm_C 54 YLDTKGLENLMKNTSLSRI 72 (87)
T ss_dssp CCCHHHHHHHHHHHCCCHH
T ss_pred CcCHHHHHHHHHHHCcCHH
Confidence 3578899999999999875
No 70
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=42.10 E-value=13 Score=22.85 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++.++...||+++|++|+
T Consensus 29 yP~~~~r~~La~~~gLt~~ 47 (83)
T 1le8_B 29 YLDTKGLENLMKNTSLSRI 47 (83)
T ss_dssp CCCHHHHHHHHHHHCCCHH
T ss_pred CcCHHHHHHHHHHHCCCHH
Confidence 3689999999999999885
No 71
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=41.83 E-value=13 Score=21.99 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHhCCcee
Q 034019 33 RDEEWLQAVASEFNISQT 50 (106)
Q Consensus 33 l~~~~mq~IA~e~n~sET 50 (106)
++.+++..||+++|++++
T Consensus 26 p~~~~r~~La~~~~l~~~ 43 (67)
T 3k2a_A 26 PSEEQKKQLAQDTGLTIL 43 (67)
T ss_dssp CCHHHHHHHHHHHTCCHH
T ss_pred CCHHHHHHHHHHhCcCHH
Confidence 689999999999999875
No 72
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=41.76 E-value=9.1 Score=23.74 Aligned_cols=20 Identities=10% Similarity=0.238 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHhCCceeE
Q 034019 32 DRDEEWLQAVASEFNISQTC 51 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sETa 51 (106)
-++.++.+.||+++|++|+.
T Consensus 45 yp~~~~r~~La~~lgL~e~q 64 (80)
T 1wh7_A 45 KHDDVAVEQFCAETGVRRQV 64 (80)
T ss_dssp SSTTHHHHHHHHHSCCCHHH
T ss_pred CCCHHHHHHHHHHhCcCcCc
Confidence 35778889999999999864
No 73
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.74 E-value=6.3 Score=23.96 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHhCCcee
Q 034019 33 RDEEWLQAVASEFNISQT 50 (106)
Q Consensus 33 l~~~~mq~IA~e~n~sET 50 (106)
++.++++.||+++|++|.
T Consensus 37 p~~~~r~~La~~lgL~~~ 54 (80)
T 2da4_A 37 VCREKIEAVATELNVDCE 54 (80)
T ss_dssp HHHHHHHHHHHHHTCCHH
T ss_pred cCHHHHHHHHHHhCCCHH
Confidence 467889999999999885
No 74
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.71 E-value=9.3 Score=22.99 Aligned_cols=18 Identities=6% Similarity=0.060 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHhCCcee
Q 034019 33 RDEEWLQAVASEFNISQT 50 (106)
Q Consensus 33 l~~~~mq~IA~e~n~sET 50 (106)
++.++...||+++|++|+
T Consensus 33 p~~~~r~~La~~~~l~~~ 50 (76)
T 2dn0_A 33 PGQSEVEHLTKVTGLSTR 50 (76)
T ss_dssp CCSHHHHHHHHHHCCCHH
T ss_pred cCHHHHHHHHHHhCCChH
Confidence 577889999999999885
No 75
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=40.96 E-value=14 Score=21.84 Aligned_cols=19 Identities=11% Similarity=0.036 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++..++..||.++|++|.
T Consensus 33 yp~~~~r~~La~~l~l~~~ 51 (75)
T 2m0c_A 33 YPDVYAREQLAMRTDLTEA 51 (75)
T ss_dssp SCCHHHHHHHHHHHTCCHH
T ss_pred CCCHHHHHHHHHHhCCCHH
Confidence 3688999999999999875
No 76
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=40.46 E-value=14 Score=22.57 Aligned_cols=18 Identities=6% Similarity=0.102 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHhCCcee
Q 034019 33 RDEEWLQAVASEFNISQT 50 (106)
Q Consensus 33 l~~~~mq~IA~e~n~sET 50 (106)
++..+...||+++|++|+
T Consensus 45 p~~~~r~~LA~~l~l~~~ 62 (81)
T 1b8i_A 45 LTRRRRIEMAHALSLTER 62 (81)
T ss_dssp CCHHHHHHHHHHHTCCHH
T ss_pred CCHHHHHHHHHHhCCCHH
Confidence 577889999999999875
No 77
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=39.12 E-value=9.1 Score=22.59 Aligned_cols=18 Identities=6% Similarity=0.130 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHhCCcee
Q 034019 33 RDEEWLQAVASEFNISQT 50 (106)
Q Consensus 33 l~~~~mq~IA~e~n~sET 50 (106)
++.++...||+++|++|+
T Consensus 27 p~~~~r~~La~~l~l~~~ 44 (68)
T 1ahd_P 27 LTRRRRIEIAHALSLTER 44 (68)
T ss_dssp CCTTHHHHHHHHHTCCHH
T ss_pred CCHHHHHHHHHHHCcCHh
Confidence 577788999999999885
No 78
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=39.09 E-value=15 Score=22.34 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHhCCcee
Q 034019 33 RDEEWLQAVASEFNISQT 50 (106)
Q Consensus 33 l~~~~mq~IA~e~n~sET 50 (106)
++..+...||+++|++|+
T Consensus 47 p~~~~r~~La~~l~l~~~ 64 (84)
T 2kt0_A 47 LSLQQMQELSNILNLSYK 64 (84)
T ss_dssp CCHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHcCCCHH
Confidence 577889999999999875
No 79
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=38.49 E-value=15 Score=23.11 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHhCCcee
Q 034019 33 RDEEWLQAVASEFNISQT 50 (106)
Q Consensus 33 l~~~~mq~IA~e~n~sET 50 (106)
++.++...||+++|++|+
T Consensus 59 p~~~~r~~LA~~l~l~~~ 76 (97)
T 1b72_A 59 LSRARRVEIAATLELNET 76 (97)
T ss_dssp CCHHHHHHHHHHHTCCHH
T ss_pred CCHHHHHHHHHHhCCCHH
Confidence 577888999999999875
No 80
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.67 E-value=22 Score=22.17 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=17.4
Q ss_pred CCCCHHHHHHHHHHhCCceeE
Q 034019 31 EDRDEEWLQAVASEFNISQTC 51 (106)
Q Consensus 31 ~~l~~~~mq~IA~e~n~sETa 51 (106)
..++.+++++||..+|+++-+
T Consensus 28 ~~Ps~eei~~LA~~lgL~~~V 48 (71)
T 2da7_A 28 MEPNSDELLKISIAVGLPQEF 48 (71)
T ss_dssp SSCCHHHHHHHHHHHTCCHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHH
Confidence 346899999999999998643
No 81
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=37.60 E-value=19 Score=21.24 Aligned_cols=19 Identities=0% Similarity=-0.079 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++..+...||+++|++|.
T Consensus 30 yp~~~~r~~La~~l~l~~~ 48 (74)
T 2ly9_A 30 FPHDSEIIRLMKITGLTKG 48 (74)
T ss_dssp SCCHHHHHHHHHHHCCCHH
T ss_pred CCCHHHHHHHHHHhCcCHH
Confidence 4688999999999999875
No 82
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=37.14 E-value=16 Score=22.48 Aligned_cols=18 Identities=6% Similarity=0.130 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHhCCcee
Q 034019 33 RDEEWLQAVASEFNISQT 50 (106)
Q Consensus 33 l~~~~mq~IA~e~n~sET 50 (106)
++..+...||+++|++|+
T Consensus 53 p~~~~r~~La~~l~l~~~ 70 (88)
T 2r5y_A 53 LTRRRRIEIAHALSLTER 70 (88)
T ss_dssp CCHHHHHHHHHHTTCCHH
T ss_pred CCHHHHHHHHHHhCcCHH
Confidence 577889999999999875
No 83
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=36.66 E-value=45 Score=18.83 Aligned_cols=19 Identities=5% Similarity=-0.046 Sum_probs=14.4
Q ss_pred EEEcCCCCCHHHHHHHHHHh
Q 034019 26 VCLLEEDRDEEWLQAVASEF 45 (106)
Q Consensus 26 Vv~~~~~l~~~~mq~IA~e~ 45 (106)
-|.. .+.++++++++++++
T Consensus 4 ~I~~-~grt~eqK~~L~~~i 22 (62)
T 3m20_A 4 IVYG-PKLDVGKKREFVERL 22 (62)
T ss_dssp EEEC-SCCCHHHHHHHHHHH
T ss_pred EEEE-CCCCHHHHHHHHHHH
Confidence 3445 678999999988774
No 84
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.09 E-value=19 Score=22.50 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHhCCceeE
Q 034019 32 DRDEEWLQAVASEFNISQTC 51 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sETa 51 (106)
-++..+...||+++|++|+.
T Consensus 37 yp~~~~r~~La~~~~l~~~q 56 (89)
T 2dmp_A 37 FPTQAELDRLRVETKLSRRE 56 (89)
T ss_dssp SCCHHHHHHHHHHHTCCHHH
T ss_pred CCCHHHHHHHHHHhCCCHHh
Confidence 35788899999999999863
No 85
>4dun_A Putative phenazine biosynthesis PHZC/PHZF protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: BTB; 1.76A {Clostridium difficile}
Probab=32.56 E-value=55 Score=24.22 Aligned_cols=22 Identities=27% Similarity=0.313 Sum_probs=18.8
Q ss_pred CCceEEEEecCCC--ccCCCCchH
Q 034019 63 NPRFRLRWFTPVA--EVSFSFYNY 84 (106)
Q Consensus 63 ~~~~~vR~FTp~~--Ei~~cGHat 84 (106)
..+++.|+|.|.. |=|-||-+.
T Consensus 184 ~~d~~~R~FaP~~G~EDPvTGSa~ 207 (263)
T 4dun_A 184 NTDFVSRYFCPELDSEDPVTGSSH 207 (263)
T ss_dssp SSSEEEEEEETTTTEEESCCSTTH
T ss_pred CceEEEEeecCCCCCCCcccchhh
Confidence 4679999999974 999999874
No 86
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=31.10 E-value=41 Score=21.09 Aligned_cols=17 Identities=29% Similarity=0.167 Sum_probs=14.7
Q ss_pred cCCCCCHHHHHHHHHHh
Q 034019 29 LEEDRDEEWLQAVASEF 45 (106)
Q Consensus 29 ~~~~l~~~~mq~IA~e~ 45 (106)
.+.+++.+|++++|+|.
T Consensus 9 ~~~pRT~EQKralaeE~ 25 (72)
T 3mb2_B 9 GDRPPDRTRKQAFAAEA 25 (72)
T ss_dssp CSSCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 45678999999999996
No 87
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=30.63 E-value=47 Score=18.75 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=13.8
Q ss_pred EEcCCCCCHHHHHHHHHHh
Q 034019 27 CLLEEDRDEEWLQAVASEF 45 (106)
Q Consensus 27 v~~~~~l~~~~mq~IA~e~ 45 (106)
|....+.+++++++|++++
T Consensus 5 I~~~~Grs~eqk~~L~~~i 23 (65)
T 3ry0_A 5 VTLLEGRSPQEVAALGEAL 23 (65)
T ss_dssp EEEESCCCHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHH
Confidence 3334567999999988875
No 88
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=30.33 E-value=21 Score=22.38 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHhCCcee
Q 034019 33 RDEEWLQAVASEFNISQT 50 (106)
Q Consensus 33 l~~~~mq~IA~e~n~sET 50 (106)
++..+...||+++|++|+
T Consensus 42 p~~~~r~~LA~~l~L~~~ 59 (93)
T 3a01_A 42 LASAERAALARGLKMTDA 59 (93)
T ss_dssp CCHHHHHHHHHTTTCCHH
T ss_pred cCHHHHHHHHHHhCCChh
Confidence 578889999999999885
No 89
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=30.04 E-value=51 Score=17.99 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=11.7
Q ss_pred CCCCCHHHHHHHHHHh
Q 034019 30 EEDRDEEWLQAVASEF 45 (106)
Q Consensus 30 ~~~l~~~~mq~IA~e~ 45 (106)
..+.++++++++++++
T Consensus 8 ~~grs~e~k~~l~~~i 23 (62)
T 1otf_A 8 IEGRTDEQKETLIRQV 23 (62)
T ss_dssp ESCCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH
Confidence 3456888888887764
No 90
>2qt7_A Receptor-type tyrosine-protein phosphatase-like N; IA-2, ICA-512, protein-tyrosine phosphatase, transmembrane protein, diabetes, autoimmunity; 1.30A {Homo sapiens} PDB: 3n01_A 3np5_A 3ng8_A 3n4w_A
Probab=29.24 E-value=36 Score=22.13 Aligned_cols=31 Identities=10% Similarity=0.161 Sum_probs=23.4
Q ss_pred EEEcCCCCCH----HHHHHHHHHhCCceeEEEecC
Q 034019 26 VCLLEEDRDE----EWLQAVASEFNISQTCYLTRL 56 (106)
Q Consensus 26 Vv~~~~~l~~----~~mq~IA~e~n~sETaFv~~~ 56 (106)
|+...+.++. .-|..+|+-+++|-+.|....
T Consensus 7 I~~~~~~ls~~eG~~l~~~la~ll~l~~~~Ft~i~ 41 (91)
T 2qt7_A 7 IVTDQKPLSLAAGVKLLEILAEHVHMSSGSFINIS 41 (91)
T ss_dssp EEESCTTCCHHHHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCccceeeeE
Confidence 4555666654 448899999999999998765
No 91
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=28.99 E-value=27 Score=21.87 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHhCCcee
Q 034019 33 RDEEWLQAVASEFNISQT 50 (106)
Q Consensus 33 l~~~~mq~IA~e~n~sET 50 (106)
++..+...||+++|++|.
T Consensus 50 p~~~~r~~LA~~l~L~~~ 67 (96)
T 3nar_A 50 PSPEEYDKLAKESGLART 67 (96)
T ss_dssp CCHHHHHHHHHHHCCCHH
T ss_pred CCHHHHHHHHHHhCCCHH
Confidence 467889999999999875
No 92
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=28.33 E-value=57 Score=17.77 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=11.5
Q ss_pred CCCCHHHHHHHHHHh
Q 034019 31 EDRDEEWLQAVASEF 45 (106)
Q Consensus 31 ~~l~~~~mq~IA~e~ 45 (106)
.+.++++++++++++
T Consensus 9 ~grs~eqk~~l~~~i 23 (61)
T 2opa_A 9 EGRTDEQKRNLVEKV 23 (61)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 456889988888775
No 93
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=28.23 E-value=53 Score=21.43 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=21.5
Q ss_pred CeeEEEEcCCCCCHHHHHHHHHHhCCceeEEEec
Q 034019 22 NPAAVCLLEEDRDEEWLQAVASEFNISQTCYLTR 55 (106)
Q Consensus 22 NPaaVv~~~~~l~~~~mq~IA~e~n~sETaFv~~ 55 (106)
+..++|+..+...++++.++|++.|+| ++..+
T Consensus 74 ~~~~iIlt~g~~~~~~i~~~A~~~~ip--vl~t~ 105 (139)
T 2ioj_A 74 NVRCLILTGNLEPVQLVLTKAEERGVP--VILTG 105 (139)
T ss_dssp TEEEEEEETTCCCCHHHHHHHHHHTCC--EEECS
T ss_pred CCcEEEEcCCCCCCHHHHHHHHHCCCe--EEEEC
Confidence 466666655545677778999999875 35443
No 94
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=28.03 E-value=38 Score=22.32 Aligned_cols=33 Identities=6% Similarity=0.090 Sum_probs=25.8
Q ss_pred eEEEEcCCCCCH----HHHHHHHHHhCCceeEEEecC
Q 034019 24 AAVCLLEEDRDE----EWLQAVASEFNISQTCYLTRL 56 (106)
Q Consensus 24 aaVv~~~~~l~~----~~mq~IA~e~n~sETaFv~~~ 56 (106)
.-|+...+.++. ..|..+|.-++++-..|...+
T Consensus 12 gYIvt~~~~l~~~~G~~l~~~la~~l~l~~~~F~~is 48 (99)
T 4hti_A 12 GYIVTDRDPLRPEEGRRLVEDVARLLQVPSSAFADVE 48 (99)
T ss_dssp EEEEESCSSCCHHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCchhheeeee
Confidence 456677777765 559999999999988898765
No 95
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=27.97 E-value=7.9 Score=22.77 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=14.8
Q ss_pred CCHHHHHHHHHHhCCcee
Q 034019 33 RDEEWLQAVASEFNISQT 50 (106)
Q Consensus 33 l~~~~mq~IA~e~n~sET 50 (106)
++.++...||+++|++|+
T Consensus 28 p~~~~r~~La~~l~l~~~ 45 (68)
T 1yz8_P 28 PDMSTREEIAVWTNLTEA 45 (68)
T ss_dssp CCTTTTTHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHCcCHH
Confidence 466778899999999875
No 96
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=27.89 E-value=27 Score=23.85 Aligned_cols=20 Identities=5% Similarity=0.192 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHhCCceeE
Q 034019 32 DRDEEWLQAVASEFNISQTC 51 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sETa 51 (106)
-++.+++..||+++|++|+.
T Consensus 121 yp~~~~r~~la~~l~L~~~q 140 (164)
T 2d5v_A 121 RPSKELQITISQQLGLELST 140 (164)
T ss_dssp SCCHHHHHHHHHHHTCCHHH
T ss_pred CCCHHHHHHHHHHHCcCHHH
Confidence 35788899999999999863
No 97
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc, dipeptide L-Leu-D-Ala, PSI-2, P structure initiative; HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Probab=27.85 E-value=12 Score=29.17 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=25.3
Q ss_pred CCCeeEEEEcCCCCCHHHHHHHHHHhCCceeE
Q 034019 20 KGNPAAVCLLEEDRDEEWLQAVASEFNISQTC 51 (106)
Q Consensus 20 ~GNPaaVv~~~~~l~~~~mq~IA~e~n~sETa 51 (106)
-.|+-++|..+.+++|+++++||+.=|+--..
T Consensus 194 HSnaral~~h~RNl~D~~l~ala~~GGvigv~ 225 (318)
T 3neh_A 194 HSNAKAICSHPRNLDDEQIKAMIEHDAMIHVV 225 (318)
T ss_dssp SCCBTTTSCCTTSBCHHHHHHHHHTTCEEEEC
T ss_pred ccchhhcCCCCCCCCHHHHHHHHHcCCEEEEE
Confidence 45777788888999999999999986654333
No 98
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=27.45 E-value=51 Score=23.45 Aligned_cols=23 Identities=26% Similarity=0.180 Sum_probs=19.4
Q ss_pred EEEcCCCCCHHHHHHHHHHhCCc
Q 034019 26 VCLLEEDRDEEWLQAVASEFNIS 48 (106)
Q Consensus 26 Vv~~~~~l~~~~mq~IA~e~n~s 48 (106)
+|.++.+|+.+|.+.++++|-..
T Consensus 75 ~iALP~EL~~eq~~~L~~~f~~~ 97 (185)
T 2ns6_A 75 EFALPVELTLDQQKALASEFAQH 97 (185)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEECCccCCHHHHHHHHHHHHHH
Confidence 67789999999999999987543
No 99
>2pw0_A PRPF methylaconitate isomerase; propionate catabolism, diaminopimelate epimerase like, aconi binding, unknown function; HET: TRC; 1.57A {Shewanella oneidensis} PDB: 2pvz_A 2h9f_A
Probab=25.86 E-value=1.6e+02 Score=23.61 Aligned_cols=64 Identities=14% Similarity=-0.001 Sum_probs=42.7
Q ss_pred CCCCeeEEEEcCCCCCHH------HHHHH-H----------HHhC--------CceeEEEecCCCCCCCCCceEEEEecC
Q 034019 19 FKGNPAAVCLLEEDRDEE------WLQAV-A----------SEFN--------ISQTCYLTRLTAADSPNPRFRLRWFTP 73 (106)
Q Consensus 19 f~GNPaaVv~~~~~l~~~------~mq~I-A----------~e~n--------~sETaFv~~~~~~~~~~~~~~vR~FTp 73 (106)
.+|...+++++.++|+.+ +..+| = ||++ .|-++.|.|+. .+.+++...|--.
T Consensus 18 RGGTSkG~ff~~~dLP~~~~~~~~~rd~~ll~~mGSpdp~~rQiDG~GG~~s~tSKvaIv~ps~---~pdaDvdylF~Qv 94 (397)
T 2pw0_A 18 RGGTSKGVFFRLQDLPEAAQVPGPARDALLLRVIGSPDPYAKQIDGMGGATSSTSKTVILSHSS---KANHDVDYLFGQV 94 (397)
T ss_dssp EETTEEEEEEEGGGSCGGGSSSSHHHHHHHHHHHTCSCTTSSCTTSSCCSSTTTSEEEEEEECC---STTCSEEEEEEEE
T ss_pred eccccceeEEcHhHCCCccccchhhHHHHHHHHhCCCCcccccccccCCCCCCcceEEEEeCCC---CCCCCeEEEEEEc
Confidence 479999999998888633 22222 2 3332 57889999984 3456676666644
Q ss_pred C------CccCCCCchHH
Q 034019 74 V------AEVSFSFYNYK 85 (106)
Q Consensus 74 ~------~Ei~~cGHatv 85 (106)
. .=-+.|||.++
T Consensus 95 ~i~~~~Vd~s~nCGN~s~ 112 (397)
T 2pw0_A 95 SIDKPFVDWSGNCGNLTA 112 (397)
T ss_dssp CSSSSCEECSSCCTTTHH
T ss_pred ccccCcCcCCCCCcchHH
Confidence 4 45679999865
No 100
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=24.89 E-value=46 Score=23.60 Aligned_cols=19 Identities=11% Similarity=0.020 Sum_probs=17.2
Q ss_pred CCCCHHHHHHHHHHhCCce
Q 034019 31 EDRDEEWLQAVASEFNISQ 49 (106)
Q Consensus 31 ~~l~~~~mq~IA~e~n~sE 49 (106)
..++++.|+.||+.+|+|.
T Consensus 39 G~l~~~~~~~iA~~l~l~~ 57 (181)
T 3i9v_2 39 GWIRPERIEEIARLVGTTP 57 (181)
T ss_dssp SSCCHHHHHHHHHHHTSCH
T ss_pred CCCCHHHHHHHHHHhCcCH
Confidence 4689999999999999985
No 101
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=24.23 E-value=75 Score=17.07 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=10.4
Q ss_pred CCCCCHHHHHHHHHHh
Q 034019 30 EEDRDEEWLQAVASEF 45 (106)
Q Consensus 30 ~~~l~~~~mq~IA~e~ 45 (106)
..+.+++++++|++++
T Consensus 11 ~~g~s~e~k~~l~~~l 26 (63)
T 2x4k_A 11 LEGRSDEQLKNLVSEV 26 (63)
T ss_dssp ESCCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH
Confidence 3456777777776664
No 102
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=24.08 E-value=35 Score=23.12 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHhCCcee
Q 034019 33 RDEEWLQAVASEFNISQT 50 (106)
Q Consensus 33 l~~~~mq~IA~e~n~sET 50 (106)
++.+++..||+++|++|+
T Consensus 118 p~~~~r~~LA~~l~L~~~ 135 (151)
T 3d1n_I 118 PTGQEITEMAKELNYDRE 135 (151)
T ss_dssp CCHHHHHHHHHHHTSCHH
T ss_pred CCHHHHHHHHHHHCCCHH
Confidence 578899999999999875
No 103
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=23.99 E-value=83 Score=17.81 Aligned_cols=14 Identities=14% Similarity=0.048 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHh
Q 034019 32 DRDEEWLQAVASEF 45 (106)
Q Consensus 32 ~l~~~~mq~IA~e~ 45 (106)
+.++++++++++++
T Consensus 13 grs~eqK~~l~~~l 26 (67)
T 3m21_A 13 GPTNEQKQQLIEGV 26 (67)
T ss_dssp BSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 68999999888775
No 104
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=22.62 E-value=30 Score=21.59 Aligned_cols=15 Identities=27% Similarity=0.224 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHHHhC
Q 034019 32 DRDEEWLQAVASEFN 46 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n 46 (106)
-++.++.+.||+++|
T Consensus 31 yP~~~~r~~lA~~l~ 45 (95)
T 2cuf_A 31 YPDEAKREEIANACN 45 (95)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC
Confidence 468899999999999
No 105
>4ayb_G DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_G 2y0s_G 2waq_G 4b1o_G 4b1p_V 3hkz_G
Probab=22.52 E-value=11 Score=26.35 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=8.9
Q ss_pred CccCCCCchHHH
Q 034019 75 AEVSFSFYNYKL 86 (106)
Q Consensus 75 ~Ei~~cGHatva 86 (106)
.|=+||||+++.
T Consensus 67 ~~~dFCGhGYvV 78 (132)
T 4ayb_G 67 TNDDFCGHGYIV 78 (132)
T ss_dssp CTTSEEBCEEEE
T ss_pred ccCccccceEEE
Confidence 355899999653
No 106
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=22.35 E-value=85 Score=18.10 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=12.8
Q ss_pred EEcCCCCCHHHHHHHHHHh
Q 034019 27 CLLEEDRDEEWLQAVASEF 45 (106)
Q Consensus 27 v~~~~~l~~~~mq~IA~e~ 45 (106)
|....+.+++++++|++++
T Consensus 6 I~~~~grs~eqK~~L~~~i 24 (72)
T 3mb2_A 6 ITMLEGRSTEQKAELARAL 24 (72)
T ss_dssp EEEESCCCHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHH
Confidence 3333557888888887764
No 107
>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A*
Probab=22.30 E-value=87 Score=24.25 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=42.7
Q ss_pred CCCCeeEEEEcCC-----CCCHHHHHHHHHHhCC----ce---eEEEecCCCCCCCCCceEEEEecCC-CccCCCCchH
Q 034019 19 FKGNPAAVCLLEE-----DRDEEWLQAVASEFNI----SQ---TCYLTRLTAADSPNPRFRLRWFTPV-AEVSFSFYNY 84 (106)
Q Consensus 19 f~GNPaaVv~~~~-----~l~~~~mq~IA~e~n~----sE---TaFv~~~~~~~~~~~~~~vR~FTp~-~Ei~~cGHat 84 (106)
.-|||=+|++.++ +++......+...+.. || +-|+... +...+++|.|=-. +|--=||-+.
T Consensus 185 smGNPH~V~fvd~~~~~~dv~~~~l~~~Gp~ie~h~~FP~g~NV~Fv~v~-----~~~~i~~Rv~ERGvGeTlACGTGa 258 (317)
T 3ejx_A 185 SMGNPHCITFGKKGGPNLKVDDLNLPEIGPKFEHHEMFPARTNTEFVEVL-----SRSHLKMRVWERGAGATLACGTGA 258 (317)
T ss_dssp ESSSEEEEESSBTTCCCCCGGGSCHHHHHHHHHTCTTCTTCCEEEEEEEE-----ETTEEEEEEEBTTTBSCSCCHHHH
T ss_pred ccCCCeEEEEEcCcccccCccccchhhhhhhhccCCcCCCCcEEEEEEEc-----cCCEEEEEEEECCCCcccCchHHH
Confidence 4699999998662 4666667777766532 33 4477654 1356999999664 7888899974
No 108
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=22.25 E-value=90 Score=17.07 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=10.8
Q ss_pred CCCCHHHHHHHHHHh
Q 034019 31 EDRDEEWLQAVASEF 45 (106)
Q Consensus 31 ~~l~~~~mq~IA~e~ 45 (106)
.+.++++++++++++
T Consensus 10 ~g~s~eqk~~l~~~l 24 (64)
T 3abf_A 10 EGRPPEKKRELVRRL 24 (64)
T ss_dssp TTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 457888888777765
No 109
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=22.01 E-value=78 Score=15.76 Aligned_cols=14 Identities=7% Similarity=-0.154 Sum_probs=11.5
Q ss_pred CCCCHHHHHHHHHH
Q 034019 31 EDRDEEWLQAVASE 44 (106)
Q Consensus 31 ~~l~~~~mq~IA~e 44 (106)
.+|+..+..+||++
T Consensus 2 rgltsrdrrriarw 15 (26)
T 1hji_B 2 RGLTSRDRRRIARW 15 (26)
T ss_dssp CSSCHHHHHHHHHH
T ss_pred CccchhhHHHHHHH
Confidence 46788889999987
No 110
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=21.16 E-value=44 Score=22.62 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHhCCcee
Q 034019 33 RDEEWLQAVASEFNISQT 50 (106)
Q Consensus 33 l~~~~mq~IA~e~n~sET 50 (106)
++..++..||+++|++|+
T Consensus 112 p~~~~r~~LA~~l~L~~~ 129 (146)
T 1au7_A 112 PSSQEIMRMAEELNLEKE 129 (146)
T ss_dssp CCHHHHHHHHHHHTCCHH
T ss_pred CCHHHHHHHHHHhCCChh
Confidence 477889999999999875
No 111
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=21.04 E-value=36 Score=18.39 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhC
Q 034019 35 EEWLQAVASEFN 46 (106)
Q Consensus 35 ~~~mq~IA~e~n 46 (106)
.+.+|+||-|++
T Consensus 13 ~~cL~~IgDEld 24 (34)
T 3pk1_B 13 SECLKRIGDELD 24 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 478999999986
No 112
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=20.97 E-value=38 Score=21.44 Aligned_cols=20 Identities=25% Similarity=0.104 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHhCCceeE
Q 034019 32 DRDEEWLQAVASEFNISQTC 51 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sETa 51 (106)
.+.-.+..++||++|+||+-
T Consensus 9 ~~~~~~wK~~~R~LGlse~~ 28 (86)
T 3oq9_A 9 DMTIQEAKKFARENNIKEGK 28 (86)
T ss_dssp HSCHHHHHHHHHTTTSCHHH
T ss_pred HcCHHHHHHHHHHcCCCHhH
Confidence 34567888999999999864
No 113
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=20.66 E-value=42 Score=25.08 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHhCCcee
Q 034019 32 DRDEEWLQAVASEFNISQT 50 (106)
Q Consensus 32 ~l~~~~mq~IA~e~n~sET 50 (106)
-++..+++.||+++|++|+
T Consensus 389 yp~~~~~~~la~~~~l~~~ 407 (421)
T 1mh3_A 389 SLNSKEKEEVAKKCGITPL 407 (421)
T ss_dssp CCCHHHHHHHHHHHTSCHH
T ss_pred CcCHHHHHHHHHHHCcCHH
Confidence 3688899999999999875
Done!