Your job contains 1 sequence.
>034020
MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS
RPLSKHKHWAVAEILKKARIYVPPSADNAAAAAVSNTQTEALVSSS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 034020
(106 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2010227 - symbol:emb1129 "embryo defective 112... 368 7.4e-34 1
TAIR|locus:2087896 - symbol:AT3G18880 species:3702 "Arabi... 366 1.2e-33 1
UNIPROTKB|Q9KNZ3 - symbol:rpsQ "30S ribosomal protein S17... 229 4.0e-19 1
TIGR_CMR|VC_2587 - symbol:VC_2587 "ribosomal protein S17"... 229 4.0e-19 1
UNIPROTKB|P0AG63 - symbol:rpsQ species:83333 "Escherichia... 218 5.8e-18 1
TIGR_CMR|CHY_2300 - symbol:CHY_2300 "ribosomal protein S1... 216 9.5e-18 1
TIGR_CMR|GSU_2848 - symbol:GSU_2848 "ribosomal protein S1... 214 1.6e-17 1
TIGR_CMR|SO_0240 - symbol:SO_0240 "ribosomal protein S17"... 213 2.0e-17 1
TIGR_CMR|CPS_0864 - symbol:CPS_0864 "ribosomal protein S1... 196 1.3e-15 1
UNIPROTKB|P95058 - symbol:rpsQ "30S ribosomal protein S17... 188 8.8e-15 1
TIGR_CMR|CBU_0247 - symbol:CBU_0247 "ribosomal protein S1... 179 7.9e-14 1
TIGR_CMR|DET_0483 - symbol:DET_0483 "ribosomal protein S1... 177 1.3e-13 1
TIGR_CMR|BA_0119 - symbol:BA_0119 "ribosomal protein S17"... 161 6.4e-12 1
TAIR|locus:2017849 - symbol:RPS17 "ribosomal protein S17"... 154 3.5e-11 1
TIGR_CMR|APH_0289 - symbol:APH_0289 "ribosomal protein S1... 148 1.5e-10 1
TIGR_CMR|ECH_0418 - symbol:ECH_0418 "ribosomal protein S1... 145 3.2e-10 1
SGD|S000004800 - symbol:MRPS17 "Mitochondrial ribosomal p... 141 1.1e-09 1
TIGR_CMR|SPO_0494 - symbol:SPO_0494 "ribosomal protein S1... 137 2.2e-09 1
POMBASE|SPBC409.14c - symbol:mrps17 "mitochondrial riboso... 132 7.6e-09 1
TIGR_CMR|CJE_1866 - symbol:CJE_1866 "ribosomal protein S1... 129 1.6e-08 1
DICTYBASE|DDB_G0277195 - symbol:mrps17 "ribosomal protein... 122 8.7e-08 1
GENEDB_PFALCIPARUM|MAL13P1.327 - symbol:MAL13P1.327 "Ribo... 122 8.7e-08 1
UNIPROTKB|Q8ID56 - symbol:MAL13P1.327 "Mitochondrial ribo... 122 8.7e-08 1
TIGR_CMR|NSE_0275 - symbol:NSE_0275 "ribosomal protein S1... 117 2.9e-07 1
UNIPROTKB|E9PE17 - symbol:MRPS17 "28S ribosomal protein S... 112 1.0e-06 1
UNIPROTKB|Q9Y2R5 - symbol:MRPS17 "28S ribosomal protein S... 112 1.0e-06 1
UNIPROTKB|F1RIU0 - symbol:LOC100624266 "Uncharacterized p... 111 1.3e-06 1
UNIPROTKB|E1C9H4 - symbol:MRPS17 "Uncharacterized protein... 110 1.6e-06 1
UNIPROTKB|E2RAD3 - symbol:MRPS17 "Uncharacterized protein... 110 1.6e-06 1
UNIPROTKB|E1BF33 - symbol:E1BF33 "Uncharacterized protein... 109 2.1e-06 1
UNIPROTKB|P82916 - symbol:MRPS17 "28S ribosomal protein S... 109 2.1e-06 1
ZFIN|ZDB-GENE-050522-390 - symbol:zgc:110031 "zgc:110031"... 109 2.1e-06 1
CGD|CAL0005820 - symbol:orf19.4176 species:5476 "Candida ... 113 2.2e-06 1
UNIPROTKB|I3L0E3 - symbol:MRPS17 "28S ribosomal protein S... 112 2.2e-06 1
UNIPROTKB|Q9XSU4 - symbol:RPS11 "40S ribosomal protein S1... 104 7.0e-06 1
UNIPROTKB|Q9DF27 - symbol:RS11 "40S ribosomal protein S11... 104 7.0e-06 1
POMBASE|SPAC144.11 - symbol:rps1102 "40S ribosomal protei... 104 7.0e-06 1
POMBASE|SPAC31G5.03 - symbol:rps1101 "40S ribosomal prote... 104 7.0e-06 1
UNIPROTKB|F1N9W9 - symbol:RPS11 "Uncharacterized protein"... 103 9.0e-06 1
UNIPROTKB|F1P553 - symbol:RPS11 "Uncharacterized protein"... 103 9.0e-06 1
UNIPROTKB|Q3T0V4 - symbol:RPS11 "40S ribosomal protein S1... 103 9.0e-06 1
UNIPROTKB|F2Z4N5 - symbol:RPS11 "40S ribosomal protein S1... 103 9.0e-06 1
UNIPROTKB|P62280 - symbol:RPS11 "40S ribosomal protein S1... 103 9.0e-06 1
UNIPROTKB|F2Z4Y8 - symbol:RPS11 "Uncharacterized protein"... 103 9.0e-06 1
UNIPROTKB|A0EZU4 - symbol:A0EZU4 "40S ribosomal protein S... 103 9.0e-06 1
UNIPROTKB|A2Q0S6 - symbol:rpS11 "Ribosomal protein S11" s... 103 9.0e-06 1
MGI|MGI:1351329 - symbol:Rps11 "ribosomal protein S11" sp... 103 9.0e-06 1
RGD|621026 - symbol:Rps11 "ribosomal protein S11" species... 103 9.0e-06 1
WB|WBGene00004480 - symbol:rps-11 species:6239 "Caenorhab... 103 9.0e-06 1
UNIPROTKB|J9P7F5 - symbol:J9P7F5 "Uncharacterized protein... 102 1.1e-05 1
UNIPROTKB|Q90YR3 - symbol:Q90YR3 "40S ribosomal protein S... 102 1.1e-05 1
MGI|MGI:1913508 - symbol:Mrps17 "mitochondrial ribosomal ... 102 1.1e-05 1
ZFIN|ZDB-GENE-040426-2701 - symbol:rps11 "ribosomal prote... 102 1.1e-05 1
DICTYBASE|DDB_G0282601 - symbol:rps11 "40S ribosomal prot... 101 1.5e-05 1
TAIR|locus:2126639 - symbol:AT4G30800 species:3702 "Arabi... 101 1.5e-05 1
GENEDB_PFALCIPARUM|PFC0775w - symbol:PFC0775w "40S riboso... 100 1.9e-05 1
RGD|1307650 - symbol:Mrps17 "mitochondrial ribosomal prot... 100 1.9e-05 1
ASPGD|ASPL0000026885 - symbol:AN5222 species:162425 "Emer... 99 2.4e-05 1
SGD|S000002432 - symbol:RPS11A "Protein component of the ... 95 6.3e-05 1
SGD|S000000252 - symbol:RPS11B "Protein component of the ... 95 6.3e-05 1
TAIR|locus:2101278 - symbol:EMB1080 "embryo defective 108... 94 8.1e-05 1
TAIR|locus:2172783 - symbol:RPS11-BETA "ribosomal protein... 90 0.00024 1
UNIPROTKB|Q292D0 - symbol:RpS11 "40S ribosomal protein S1... 87 0.00049 1
ZFIN|ZDB-GENE-081105-168 - symbol:si:dkey-159f12.2 "si:dk... 87 0.00072 1
UNIPROTKB|F1LU15 - symbol:F1LU15 "Uncharacterized protein... 85 0.00072 1
>TAIR|locus:2010227 [details] [associations]
symbol:emb1129 "embryo defective 1129" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0022627 "cytosolic small
ribosomal subunit" evidence=ISS] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=RCA] InterPro:IPR000266
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AC007504 eggNOG:COG0186 KO:K02961 PANTHER:PTHR10744
HOGENOM:HOG000231339 HAMAP:MF_01345_B TIGRFAMs:TIGR03635
OMA:CRLVEIV HSSP:P23828 ProtClustDB:CLSN2682485 EMBL:BT005147
EMBL:AK118089 IPI:IPI00536541 PIR:D96530 RefSeq:NP_175365.1
UniGene:At.38232 ProteinModelPortal:Q9XIA6 SMR:Q9XIA6 STRING:Q9XIA6
PaxDb:Q9XIA6 PRIDE:Q9XIA6 EnsemblPlants:AT1G49400.1 GeneID:841363
KEGG:ath:AT1G49400 TAIR:At1g49400 InParanoid:Q9XIA6
PhylomeDB:Q9XIA6 ArrayExpress:Q9XIA6 Genevestigator:Q9XIA6
Uniprot:Q9XIA6
Length = 116
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 70/106 (66%), Positives = 80/106 (75%)
Query: 1 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60
MK V+G VVSNKMQKSVVVAVDRLFH+K+YNRYVKRTSKFMAHD+ + CNIGDRV+LDPS
Sbjct: 1 MKPVIGTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDDKDACNIGDRVKLDPS 60
Query: 61 RPLSKHKHWAVAEILKKARIYXXXXXXXXXXXXXXXTQTEALVSSS 106
RPLSK+KHW VAEI+KKARIY + SS+
Sbjct: 61 RPLSKNKHWIVAEIIKKARIYSPKAAAAAVSASASASSASTTDSSA 106
>TAIR|locus:2087896 [details] [associations]
symbol:AT3G18880 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA]
InterPro:IPR000266 InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973
ProDom:PD001295 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AP002039 eggNOG:COG0186
KO:K02961 PANTHER:PTHR10744 HOGENOM:HOG000231339 HAMAP:MF_01345_B
TIGRFAMs:TIGR03635 HSSP:P23828 EMBL:BT004700 EMBL:AK118396
IPI:IPI00537458 RefSeq:NP_188518.1 UniGene:At.38481
ProteinModelPortal:Q9LHN1 SMR:Q9LHN1 STRING:Q9LHN1 PaxDb:Q9LHN1
EnsemblPlants:AT3G18880.1 GeneID:821421 KEGG:ath:AT3G18880
TAIR:At3g18880 InParanoid:Q9LHN1 OMA:ITETRPM PhylomeDB:Q9LHN1
ProtClustDB:CLSN2682485 Genevestigator:Q9LHN1 Uniprot:Q9LHN1
Length = 105
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 71/106 (66%), Positives = 81/106 (76%)
Query: 1 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60
MK+V+G VVSNKMQ SVVVAVDRLFH+ +YNRYVKRTSKFMAHDE + CNIGDRV+LDPS
Sbjct: 1 MKAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEKDSCNIGDRVKLDPS 60
Query: 61 RPLSKHKHWAVAEILKKARIYXXXXXXXXXXXXXXXTQTEALVSSS 106
RPLSKHKHW V+EI+KKARIY + + VSSS
Sbjct: 61 RPLSKHKHWIVSEIIKKARIYSPQAAAAALNSSTSIAE-QPPVSSS 105
>UNIPROTKB|Q9KNZ3 [details] [associations]
symbol:rpsQ "30S ribosomal protein S17" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000266 InterPro:IPR019979
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
eggNOG:COG0186 KO:K02961 PANTHER:PTHR10744 ProtClustDB:PRK05610
HAMAP:MF_01345_B TIGRFAMs:TIGR03635 PIR:E82058 RefSeq:NP_232215.1
ProteinModelPortal:Q9KNZ3 SMR:Q9KNZ3 PRIDE:Q9KNZ3 DNASU:2615604
GeneID:2615604 KEGG:vch:VC2587 PATRIC:20084200 OMA:KLKTWKV
Uniprot:Q9KNZ3
Length = 84
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 40/80 (50%), Positives = 61/80 (76%)
Query: 1 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60
+++ +G VVS+KM KS+VVA++R+ H +Y ++VKRT+K AHDENN+C IGD V +
Sbjct: 5 IRTQLGRVVSDKMDKSIVVAIERMVKHPIYGKFVKRTTKVHAHDENNECGIGDTVEIREC 64
Query: 61 RPLSKHKHWAVAEILKKARI 80
RPLSK K W + +I++KA++
Sbjct: 65 RPLSKTKSWTLVKIVEKAKM 84
>TIGR_CMR|VC_2587 [details] [associations]
symbol:VC_2587 "ribosomal protein S17" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000266 InterPro:IPR019979 InterPro:IPR019984
Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295 PROSITE:PS00056
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0019843 eggNOG:COG0186 KO:K02961 PANTHER:PTHR10744
ProtClustDB:PRK05610 HAMAP:MF_01345_B TIGRFAMs:TIGR03635 PIR:E82058
RefSeq:NP_232215.1 ProteinModelPortal:Q9KNZ3 SMR:Q9KNZ3
PRIDE:Q9KNZ3 DNASU:2615604 GeneID:2615604 KEGG:vch:VC2587
PATRIC:20084200 OMA:KLKTWKV Uniprot:Q9KNZ3
Length = 84
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 40/80 (50%), Positives = 61/80 (76%)
Query: 1 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60
+++ +G VVS+KM KS+VVA++R+ H +Y ++VKRT+K AHDENN+C IGD V +
Sbjct: 5 IRTQLGRVVSDKMDKSIVVAIERMVKHPIYGKFVKRTTKVHAHDENNECGIGDTVEIREC 64
Query: 61 RPLSKHKHWAVAEILKKARI 80
RPLSK K W + +I++KA++
Sbjct: 65 RPLSKTKSWTLVKIVEKAKM 84
>UNIPROTKB|P0AG63 [details] [associations]
symbol:rpsQ species:83333 "Escherichia coli K-12"
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0019843 "rRNA binding" evidence=IDA] [GO:0070181 "SSU rRNA
binding" evidence=IDA] [GO:0046677 "response to antibiotic"
evidence=IEA;IMP] [GO:0006412 "translation" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR000266 InterPro:IPR019979 InterPro:IPR019984
Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295 PROSITE:PS00056
EMBL:X01563 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0046677 EMBL:U18997
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
PDB:3J00 PDBsum:3J00 GO:GO:0070181 PDB:3FIH PDB:3IZV PDB:3IZW
PDBsum:3FIH PDBsum:3IZV PDBsum:3IZW GO:GO:0022627 PDB:3SFS PDB:3UOQ
PDBsum:3SFS PDBsum:3UOQ PDB:1EG0 PDBsum:1EG0 EMBL:V00357
EMBL:X02613 eggNOG:COG0186 KO:K02961 PANTHER:PTHR10744 PDB:4GAS
PDB:4GD1 PDBsum:4GAS PDBsum:4GD1 PDB:1M5G PDB:1P6G PDB:1P87
PDB:1VS5 PDB:1VS7 PDB:2AVY PDB:2AW7 PDB:2GY9 PDB:2GYB PDB:2I2P
PDB:2I2U PDB:2QAL PDB:2QAN PDB:2QB9 PDB:2QBB PDB:2QBD PDB:2QBF
PDB:2QBH PDB:2QBJ PDB:2QOU PDB:2QOW PDB:2QOY PDB:2QP0 PDB:2WWL
PDB:2YKR PDB:2Z4K PDB:2Z4M PDB:3E1A PDB:3E1C PDB:3I1M PDB:3I1O
PDB:3I1Q PDB:3I1S PDB:3I1Z PDB:3I21 PDB:3J0U PDB:3J0V PDB:3J0X
PDB:3J0Z PDB:3J10 PDB:3J13 PDB:3J18 PDB:3KC4 PDB:3OAQ PDB:3OAR
PDB:3OFA PDB:3OFB PDB:3OFO PDB:3OFP PDB:3OFX PDB:3OFY PDB:3OR9
PDB:3ORA PDB:4A2I PDB:4ADV PDB:4GAQ PDB:4GD2 PDBsum:1M5G
PDBsum:1P6G PDBsum:1P87 PDBsum:1VS5 PDBsum:1VS7 PDBsum:2AVY
PDBsum:2AW7 PDBsum:2GY9 PDBsum:2GYB PDBsum:2I2P PDBsum:2I2U
PDBsum:2QAL PDBsum:2QAN PDBsum:2QB9 PDBsum:2QBB PDBsum:2QBD
PDBsum:2QBF PDBsum:2QBH PDBsum:2QBJ PDBsum:2QOU PDBsum:2QOW
PDBsum:2QOY PDBsum:2QP0 PDBsum:2WWL PDBsum:2YKR PDBsum:2Z4K
PDBsum:2Z4M PDBsum:3E1A PDBsum:3E1C PDBsum:3I1M PDBsum:3I1O
PDBsum:3I1Q PDBsum:3I1S PDBsum:3I1Z PDBsum:3I21 PDBsum:3J0U
PDBsum:3J0V PDBsum:3J0X PDBsum:3J0Z PDBsum:3J10 PDBsum:3J13
PDBsum:3J18 PDBsum:3KC4 PDBsum:3OAQ PDBsum:3OAR PDBsum:3OFA
PDBsum:3OFB PDBsum:3OFO PDBsum:3OFP PDBsum:3OFX PDBsum:3OFY
PDBsum:3OR9 PDBsum:3ORA PDBsum:4A2I PDBsum:4ADV PDBsum:4GAQ
PDBsum:4GD2 HOGENOM:HOG000231339 ProtClustDB:PRK05610
HAMAP:MF_01345_B TIGRFAMs:TIGR03635 OMA:TIRECRP PIR:A37519
RefSeq:NP_417770.1 RefSeq:YP_492121.1 ProteinModelPortal:P0AG63
SMR:P0AG63 DIP:DIP-47952N IntAct:P0AG63 PRIDE:P0AG63
EnsemblBacteria:EBESCT00000002794 EnsemblBacteria:EBESCT00000018159
GeneID:12934391 GeneID:947808 KEGG:ecj:Y75_p3865 KEGG:eco:b3311
PATRIC:32122054 EchoBASE:EB0909 EcoGene:EG10916
BioCyc:EcoCyc:EG10916-MONOMER BioCyc:ECOL316407:JW3273-MONOMER
EvolutionaryTrace:P0AG63 Genevestigator:P0AG63 Uniprot:P0AG63
Length = 84
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 37/78 (47%), Positives = 57/78 (73%)
Query: 1 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60
++++ G VVS+KM+KS+VVA++R H +Y +++KRT+K HDENN+C IGD V +
Sbjct: 5 IRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIREC 64
Query: 61 RPLSKHKHWAVAEILKKA 78
RPLSK K W + +++KA
Sbjct: 65 RPLSKTKSWTLVRVVEKA 82
>TIGR_CMR|CHY_2300 [details] [associations]
symbol:CHY_2300 "ribosomal protein S17" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR000266 InterPro:IPR019979
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 eggNOG:COG0186
KO:K02961 PANTHER:PTHR10744 HOGENOM:HOG000231339
ProtClustDB:PRK05610 HAMAP:MF_01345_B TIGRFAMs:TIGR03635
OMA:TIRECRP RefSeq:YP_361109.1 ProteinModelPortal:Q3A9S5 SMR:Q3A9S5
STRING:Q3A9S5 GeneID:3728245 KEGG:chy:CHY_2300 PATRIC:21277671
BioCyc:CHYD246194:GJCN-2299-MONOMER Uniprot:Q3A9S5
Length = 98
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 39/79 (49%), Positives = 56/79 (70%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSR 61
K +G VVS+KM K+VVVAV+ L H +Y + ++RT KF AHDE+N C GD V++ +R
Sbjct: 8 KIKIGRVVSDKMDKTVVVAVEELVSHPLYKKTIRRTKKFKAHDEHNACRTGDIVKIAETR 67
Query: 62 PLSKHKHWAVAEILKKARI 80
PLSK K W V EI+++ ++
Sbjct: 68 PLSKEKRWRVVEIIERGKV 86
>TIGR_CMR|GSU_2848 [details] [associations]
symbol:GSU_2848 "ribosomal protein S17" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000266
InterPro:IPR019979 InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973
ProDom:PD001295 PROSITE:PS00056 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
eggNOG:COG0186 KO:K02961 PANTHER:PTHR10744 HOGENOM:HOG000231339
ProtClustDB:PRK05610 HAMAP:MF_01345_B TIGRFAMs:TIGR03635
OMA:TIRECRP RefSeq:NP_953891.1 ProteinModelPortal:Q748Z7
GeneID:2688722 KEGG:gsu:GSU2848 PATRIC:22028543
BioCyc:GSUL243231:GH27-2814-MONOMER Uniprot:Q748Z7
Length = 85
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 40/76 (52%), Positives = 54/76 (71%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSR 61
K+ VG+VVS+KM K+VVV V L H VYN+Y+KR+ K+ AHD +N C GDRV + +R
Sbjct: 8 KTQVGVVVSDKMDKTVVVRVSHLVKHPVYNKYIKRSVKYKAHDTDNSCKTGDRVLIVETR 67
Query: 62 PLSKHKHWAVAEILKK 77
PLSK K W V +I+ +
Sbjct: 68 PLSKDKRWKVRQIIDR 83
>TIGR_CMR|SO_0240 [details] [associations]
symbol:SO_0240 "ribosomal protein S17" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000266 InterPro:IPR019979 InterPro:IPR019984
Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295 PROSITE:PS00056
GO:GO:0006412 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0019843 eggNOG:COG0186 KO:K02961 PANTHER:PTHR10744
HOGENOM:HOG000231339 ProtClustDB:PRK05610 HAMAP:MF_01345_B
TIGRFAMs:TIGR03635 OMA:TIRECRP RefSeq:NP_715880.1
ProteinModelPortal:Q8EK60 SMR:Q8EK60 GeneID:1168123
KEGG:son:SO_0240 PATRIC:23520173 Uniprot:Q8EK60
Length = 82
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 38/78 (48%), Positives = 54/78 (69%)
Query: 1 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60
++++ G V SNKM K++ VA++R H +Y +Y+KRT+K AHDE NQCN GD V +
Sbjct: 5 IRTLQGRVTSNKMDKTITVAIERQVKHPIYGKYIKRTTKIHAHDEANQCNEGDVVAIREC 64
Query: 61 RPLSKHKHWAVAEILKKA 78
RPLSK K W + E++ KA
Sbjct: 65 RPLSKTKSWTLVEVVSKA 82
>TIGR_CMR|CPS_0864 [details] [associations]
symbol:CPS_0864 "ribosomal protein S17" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000266
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 GO:GO:0006412 GO:GO:0005840 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 eggNOG:COG0186
KO:K02961 PANTHER:PTHR10744 HOGENOM:HOG000231339 HAMAP:MF_01345_B
TIGRFAMs:TIGR03635 OMA:TIRECRP RefSeq:YP_267613.1
ProteinModelPortal:Q488A2 SMR:Q488A2 STRING:Q488A2 GeneID:3522447
KEGG:cps:CPS_0864 PATRIC:21465021
BioCyc:CPSY167879:GI48-950-MONOMER Uniprot:Q488A2
Length = 83
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 34/78 (43%), Positives = 54/78 (69%)
Query: 1 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60
++++ G+VVSNKM KS+VV ++R H +Y +Y+ R++K AHDE N CN GD V +
Sbjct: 6 IRTLQGVVVSNKMDKSIVVLIERRVKHPMYGKYMTRSTKLKAHDETNVCNEGDLVTITEV 65
Query: 61 RPLSKHKHWAVAEILKKA 78
P+SK K+W + +++ KA
Sbjct: 66 APISKSKNWKLVDVITKA 83
>UNIPROTKB|P95058 [details] [associations]
symbol:rpsQ "30S ribosomal protein S17" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR000266
InterPro:IPR019979 InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973
ProDom:PD001295 PROSITE:PS00056 GO:GO:0005886 GO:GO:0040007
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0006412 GO:GO:0005840 EMBL:BX842574 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
eggNOG:COG0186 KO:K02961 PANTHER:PTHR10744 HOGENOM:HOG000231339
ProtClustDB:PRK05610 HAMAP:MF_01345_B TIGRFAMs:TIGR03635 PIR:A70643
RefSeq:NP_215224.1 RefSeq:NP_335154.1 RefSeq:YP_006514054.1
ProteinModelPortal:P95058 SMR:P95058
EnsemblBacteria:EBMYCT00000003853 EnsemblBacteria:EBMYCT00000069493
GeneID:13318599 GeneID:888391 GeneID:926027 KEGG:mtc:MT0737
KEGG:mtu:Rv0710 KEGG:mtv:RVBD_0710 PATRIC:18123351
TubercuList:Rv0710 OMA:GPKHTPS Uniprot:P95058
Length = 135
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 36/78 (46%), Positives = 53/78 (67%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSR 61
K+ +G VVS+KMQK++VV ++ H +Y + ++ T K AHDE++ IGDRV L +R
Sbjct: 58 KTRIGYVVSDKMQKTIVVELEDRMRHPLYGKIIRTTKKVKAHDEDSVAGIGDRVSLMETR 117
Query: 62 PLSKHKHWAVAEILKKAR 79
PLS K W + EIL+KA+
Sbjct: 118 PLSATKRWRLVEILEKAK 135
>TIGR_CMR|CBU_0247 [details] [associations]
symbol:CBU_0247 "ribosomal protein S17" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000266 InterPro:IPR019979
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 GO:GO:0006412 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 eggNOG:COG0186
KO:K02961 PANTHER:PTHR10744 HOGENOM:HOG000231339
ProtClustDB:PRK05610 HAMAP:MF_01345_B TIGRFAMs:TIGR03635
OMA:TIRECRP RefSeq:NP_819291.2 ProteinModelPortal:Q83ER7 SMR:Q83ER7
GeneID:1208128 KEGG:cbu:CBU_0247 PATRIC:17929187
BioCyc:CBUR227377:GJ7S-253-MONOMER Uniprot:Q83ER7
Length = 89
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 34/78 (43%), Positives = 53/78 (67%)
Query: 1 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60
++S++G VVSNKM +VVV V+R H Y +++KR++K AHD+ N+ IGD V +
Sbjct: 8 VRSLMGTVVSNKMNDTVVVRVERRVKHPKYGKFIKRSTKIHAHDKGNEGQIGDIVTIREC 67
Query: 61 RPLSKHKHWAVAEILKKA 78
RP+SK K W + +I ++A
Sbjct: 68 RPISKTKSWTLVKINERA 85
>TIGR_CMR|DET_0483 [details] [associations]
symbol:DET_0483 "ribosomal protein S17" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000266 InterPro:IPR019979 InterPro:IPR019984
Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295 PROSITE:PS00056
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000027
GenomeReviews:CP000027_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0019843 eggNOG:COG0186 KO:K02961
PANTHER:PTHR10744 HOGENOM:HOG000231339 ProtClustDB:PRK05610
HAMAP:MF_01345_B TIGRFAMs:TIGR03635 RefSeq:YP_181227.1
ProteinModelPortal:Q3Z972 STRING:Q3Z972 GeneID:3230138
KEGG:det:DET0483 PATRIC:21608035 OMA:CRLVEIV
BioCyc:DETH243164:GJNF-483-MONOMER Uniprot:Q3Z972
Length = 86
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 30/79 (37%), Positives = 51/79 (64%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSR 61
K+ +G V+S++M+K++VV +D H +Y + +RT K++ HDE N+ IGD + + R
Sbjct: 5 KTRIGHVISDRMEKTIVVGIDVAKRHPLYKKTYRRTMKYLVHDEKNEAKIGDMIEIVKCR 64
Query: 62 PLSKHKHWAVAEILKKARI 80
P+SK K+W + I+ K I
Sbjct: 65 PISKGKYWRLNRIITKGHI 83
>TIGR_CMR|BA_0119 [details] [associations]
symbol:BA_0119 "ribosomal protein S17" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000266 InterPro:IPR019979 InterPro:IPR019984
Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295 PROSITE:PS00056
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0019843 eggNOG:COG0186 KO:K02961
PANTHER:PTHR10744 HOGENOM:HOG000231339 ProtClustDB:PRK05610
HAMAP:MF_01345_B TIGRFAMs:TIGR03635 RefSeq:NP_842687.1
RefSeq:YP_016724.1 RefSeq:YP_026405.1 ProteinModelPortal:Q81VS1
SMR:Q81VS1 DNASU:1084742 EnsemblBacteria:EBBACT00000009290
EnsemblBacteria:EBBACT00000016771 EnsemblBacteria:EBBACT00000021172
GeneID:1084742 GeneID:2818179 GeneID:2853163 KEGG:ban:BA_0119
KEGG:bar:GBAA_0119 KEGG:bat:BAS0119 OMA:TIRECRP
BioCyc:BANT260799:GJAJ-130-MONOMER
BioCyc:BANT261594:GJ7F-132-MONOMER Uniprot:Q81VS1
Length = 87
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSR 61
K G VVS+KM K++ V V+ H +Y + VK + K+ AHDE NQ +GD V++ +R
Sbjct: 8 KVYTGRVVSDKMDKTITVLVETYKTHSLYGKRVKYSKKYKAHDEQNQAKLGDIVKIMETR 67
Query: 62 PLSKHKHWAVAEILKKARI 80
PLS K + + EI+++A I
Sbjct: 68 PLSATKRFRLVEIVEEAVI 86
>TAIR|locus:2017849 [details] [associations]
symbol:RPS17 "ribosomal protein S17" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0006412 "translation"
evidence=ISS;TAS] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009534 "chloroplast
thylakoid" evidence=IDA] [GO:0032544 "plastid translation"
evidence=IMP] [GO:0000312 "plastid small ribosomal subunit"
evidence=ISS] InterPro:IPR000266 InterPro:IPR019979
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0009570 GO:GO:0009941 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0009534 GO:GO:0019843
EMBL:AC011717 GO:GO:0032544 EMBL:J05215 EMBL:Z11151 EMBL:AF386974
EMBL:AY072539 IPI:IPI00548733 PIR:S20942 RefSeq:NP_178103.1
UniGene:At.22304 UniGene:At.69451 ProteinModelPortal:P16180
SMR:P16180 STRING:P16180 PaxDb:P16180 PRIDE:P16180
EnsemblPlants:AT1G79850.1 GeneID:844324 KEGG:ath:AT1G79850
GeneFarm:46 TAIR:At1g79850 eggNOG:COG0186 HOGENOM:HOG000231340
InParanoid:P16180 KO:K02961 OMA:PKYKRRV PhylomeDB:P16180
ProtClustDB:CLSN2681865 Genevestigator:P16180 GermOnline:AT1G79850
GO:GO:0000312 PANTHER:PTHR10744 Uniprot:P16180
Length = 149
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 33/78 (42%), Positives = 46/78 (58%)
Query: 1 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60
MK++ G VV K+V V V RL H Y R V+ K+ AHD +NQ +GD VRL+ S
Sbjct: 50 MKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKS 109
Query: 61 RPLSKHKHWAVAEILKKA 78
RP+SK K + ++ +A
Sbjct: 110 RPISKTKSFVALPVIARA 127
>TIGR_CMR|APH_0289 [details] [associations]
symbol:APH_0289 "ribosomal protein S17" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS] [GO:0042255
"ribosome assembly" evidence=ISS] InterPro:IPR000266
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000235 GenomeReviews:CP000235_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 KO:K02961
PANTHER:PTHR10744 RefSeq:YP_504901.1 ProteinModelPortal:Q2GL50
STRING:Q2GL50 GeneID:3930501 KEGG:aph:APH_0289 PATRIC:20949152
eggNOG:NOG138354 HOGENOM:HOG000231339 OMA:VVKIREH
ProtClustDB:PRK05610 BioCyc:APHA212042:GHPM-319-MONOMER
HAMAP:MF_01345_B TIGRFAMs:TIGR03635 Uniprot:Q2GL50
Length = 76
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 4 VVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPL 63
+VG+V + K+V V+V R+ HHKVY + VK+ + HDE N+C GD V++ P+
Sbjct: 6 LVGVVTDARRDKTVKVSVYRMVHHKVYKKIVKKCRVYSVHDEQNRCARGDVVKIREHVPI 65
Query: 64 SKHKHWAVAE 73
S K W V +
Sbjct: 66 SATKRWIVVD 75
>TIGR_CMR|ECH_0418 [details] [associations]
symbol:ECH_0418 "ribosomal protein S17" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000266
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 eggNOG:COG0186
KO:K02961 PANTHER:PTHR10744 HOGENOM:HOG000231339
ProtClustDB:PRK05610 HAMAP:MF_01345_B TIGRFAMs:TIGR03635
RefSeq:YP_507236.1 ProteinModelPortal:Q2GH47 STRING:Q2GH47
GeneID:3928046 KEGG:ech:ECH_0418 PATRIC:20576313
BioCyc:ECHA205920:GJNR-419-MONOMER Uniprot:Q2GH47
Length = 83
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSR 61
K + G+VV K K++ V V R+ HK Y + VK+ ++ HDE+NQ GD V++
Sbjct: 13 KVLTGIVVDAKCDKTIKVMVSRMIMHKTYKKIVKKRKNYVVHDEHNQYKCGDVVKIQEHI 72
Query: 62 PLSKHKHWAV 71
P+S K W V
Sbjct: 73 PISATKRWIV 82
>SGD|S000004800 [details] [associations]
symbol:MRPS17 "Mitochondrial ribosomal protein of the small
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0003735
"structural constituent of ribosome" evidence=IEA;IPI] [GO:0006412
"translation" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IPI] [GO:0030435 "sporulation resulting
in formation of a cellular spore" evidence=IEA] [GO:0032543
"mitochondrial translation" evidence=IC] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019843 "rRNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000266 Pfam:PF00366 ProDom:PD001295 PROSITE:PS00056
SGD:S000004800 GO:GO:0030435 EMBL:BK006946 GO:GO:0003735
GO:GO:0032543 EMBL:Z49808 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0019843 GO:GO:0005763 EMBL:U20641
eggNOG:COG0186 PANTHER:PTHR10744 OrthoDB:EOG466ZWW PIR:S55135
RefSeq:NP_013913.1 ProteinModelPortal:Q03246 SMR:Q03246
DIP:DIP-6688N IntAct:Q03246 MINT:MINT-615939 STRING:Q03246
PaxDb:Q03246 EnsemblFungi:YMR188C GeneID:855226 KEGG:sce:YMR188C
CYGD:YMR188c HOGENOM:HOG000248070 OMA:KMQKTVK NextBio:978756
Genevestigator:Q03246 GermOnline:YMR188C Uniprot:Q03246
Length = 237
Score = 141 (54.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/77 (41%), Positives = 52/77 (67%)
Query: 2 KSVVGLVVSN-KMQKSVVVAVD-RLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDP 59
++ +GLVVS KMQK+V V V+ ++F+ K+ N+ + ++ HDE GD VR++
Sbjct: 4 QNFLGLVVSQGKMQKTVKVRVETKVFNKKI-NKELFHRRDYLVHDEGEISREGDLVRIEA 62
Query: 60 SRPLSKHKHWAVAEILK 76
+RPLSK K +A+AEI++
Sbjct: 63 TRPLSKRKFFAIAEIIR 79
>TIGR_CMR|SPO_0494 [details] [associations]
symbol:SPO_0494 "ribosomal protein S17" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000266
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 eggNOG:COG0186
KO:K02961 PANTHER:PTHR10744 HOGENOM:HOG000231339
ProtClustDB:PRK05610 HAMAP:MF_01345_B TIGRFAMs:TIGR03635
OMA:WIVVKDS RefSeq:YP_165756.1 ProteinModelPortal:Q5LW49 SMR:Q5LW49
GeneID:3194784 KEGG:sil:SPO0494 PATRIC:23374249 Uniprot:Q5LW49
Length = 76
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSK 65
G V S+ ++V V V+R F H V + ++++ K+ AHDE N +GD VR+ P SK
Sbjct: 8 GTVTSDANAQTVTVLVERRFTHPVLKKTIRKSKKYRAHDEKNAFKVGDTVRIIECAPKSK 67
Query: 66 HKHWAVAE 73
K W V E
Sbjct: 68 TKRWEVLE 75
>POMBASE|SPBC409.14c [details] [associations]
symbol:mrps17 "mitochondrial ribosomal protein subunit
S17 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0005763
"mitochondrial small ribosomal subunit" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0032543 "mitochondrial translation" evidence=NAS]
InterPro:IPR000266 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 PomBase:SPBC409.14c EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003735 GO:GO:0032543
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
GO:GO:0005763 eggNOG:COG0186 PANTHER:PTHR10744 HOGENOM:HOG000231339
PIR:T40441 RefSeq:NP_595464.1 HSSP:P23828 ProteinModelPortal:Q9UUB0
STRING:Q9UUB0 EnsemblFungi:SPBC409.14c.1 GeneID:2540774
KEGG:spo:SPBC409.14c OrthoDB:EOG466ZWW NextBio:20801893
Uniprot:Q9UUB0
Length = 90
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 1 MK-SVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDP 59
MK + VG+V+S M K+ V V + H V +YV + +M D+ N CN+GD V + P
Sbjct: 1 MKLNYVGIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDDLN-CNVGDAVTIQP 59
Query: 60 SRPLSKHKHWAVAEILKKA 78
RP S K + + +IL A
Sbjct: 60 CRPRSATKRFEIIKILSTA 78
>TIGR_CMR|CJE_1866 [details] [associations]
symbol:CJE_1866 "ribosomal protein S17" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000266
InterPro:IPR019979 InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973
ProDom:PD001295 PROSITE:PS00056 GO:GO:0006412 GO:GO:0005840
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
eggNOG:COG0186 KO:K02961 PANTHER:PTHR10744 HOGENOM:HOG000231339
ProtClustDB:PRK05610 HAMAP:MF_01345_B TIGRFAMs:TIGR03635
RefSeq:YP_179836.1 ProteinModelPortal:Q5HS99 STRING:Q5HS99
GeneID:3232493 KEGG:cjr:CJE1866 PATRIC:20045564 OMA:WIVVKDS
BioCyc:CJEJ195099:GJC0-1905-MONOMER Uniprot:Q5HS99
Length = 83
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSR 61
+ + G+VV +K+ V V+R H Y + VKR K++ HDE N+ +GD V R
Sbjct: 5 REIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYLIHDERNEVKVGDTVVAVECR 64
Query: 62 PLSKHKHWAVAEIL 75
PLSK K + + +L
Sbjct: 65 PLSKRKSFRLKSVL 78
>DICTYBASE|DDB_G0277195 [details] [associations]
symbol:mrps17 "ribosomal protein S17, mitochondrial"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000266 Pfam:PF00366 ProDom:PD001295
dictyBase:DDB_G0277195 GO:GO:0005739 GO:GO:0006412
GenomeReviews:CM000151_GR GO:GO:0005840 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AAFI02000019 GO:GO:0019843 RefSeq:XP_642722.1
ProteinModelPortal:Q86K64 STRING:Q86K64 EnsemblProtists:DDB0267024
GeneID:8620915 KEGG:ddi:DDB_G0277195 OMA:PQYIVTP Uniprot:Q86K64
Length = 127
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHK-VYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60
K + G+ +S K+ + V RL+ K Y+ +T+K+M HD N+ C +GD+V
Sbjct: 14 KFISGVCISKTHTKTAMCQVKRLYFDKGKYSALNYKTTKYMIHDPNDICAVGDQVHFREC 73
Query: 61 RPLSKHKHWAVAEILKK 77
P+SK K V +I+KK
Sbjct: 74 APVSKRKAHVVEKIVKK 90
>GENEDB_PFALCIPARUM|MAL13P1.327 [details] [associations]
symbol:MAL13P1.327 "Ribosomal protein S17
homologue, putative" species:5833 "Plasmodium falciparum"
[GO:0000314 "organellar small ribosomal subunit" evidence=ISS]
InterPro:IPR000266 Pfam:PF00366 ProDom:PD001295 GO:GO:0006412
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AL844509 HOGENOM:HOG000231339 HSSP:P23828
RefSeq:XP_001350362.1 ProteinModelPortal:Q8ID56
EnsemblProtists:MAL13P1.327:mRNA GeneID:813893 KEGG:pfa:MAL13P1.327
EuPathDB:PlasmoDB:PF3D7_1365100 OMA:IGYVIND ProtClustDB:CLSZ2431896
GO:GO:0000314 Uniprot:Q8ID56
Length = 115
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDP-S 60
K ++G V+++K KS+ VA DR + Y + + T K AHDE ++ +GD VR+ P
Sbjct: 35 KEMIGYVINDKHPKSIRVACDRYMYVVRYKKTFRYTKKIWAHDEKSEAKVGDVVRIQPLG 94
Query: 61 RPLSKHKHWAVAEILKK 77
+ K++ + +IL K
Sbjct: 95 YRIGPWKNYILVKILYK 111
>UNIPROTKB|Q8ID56 [details] [associations]
symbol:MAL13P1.327 "Mitochondrial ribosomal protein S17,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000314
"organellar small ribosomal subunit" evidence=ISS]
InterPro:IPR000266 Pfam:PF00366 ProDom:PD001295 GO:GO:0006412
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AL844509 HOGENOM:HOG000231339 HSSP:P23828
RefSeq:XP_001350362.1 ProteinModelPortal:Q8ID56
EnsemblProtists:MAL13P1.327:mRNA GeneID:813893 KEGG:pfa:MAL13P1.327
EuPathDB:PlasmoDB:PF3D7_1365100 OMA:IGYVIND ProtClustDB:CLSZ2431896
GO:GO:0000314 Uniprot:Q8ID56
Length = 115
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDP-S 60
K ++G V+++K KS+ VA DR + Y + + T K AHDE ++ +GD VR+ P
Sbjct: 35 KEMIGYVINDKHPKSIRVACDRYMYVVRYKKTFRYTKKIWAHDEKSEAKVGDVVRIQPLG 94
Query: 61 RPLSKHKHWAVAEILKK 77
+ K++ + +IL K
Sbjct: 95 YRIGPWKNYILVKILYK 111
>TIGR_CMR|NSE_0275 [details] [associations]
symbol:NSE_0275 "ribosomal protein S17" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000266
InterPro:IPR019984 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000237
GenomeReviews:CP000237_GR KO:K02961 PANTHER:PTHR10744
eggNOG:NOG138354 HOGENOM:HOG000231339 OMA:VVKIREH
TIGRFAMs:TIGR03635 RefSeq:YP_506166.1 ProteinModelPortal:Q2GED0
STRING:Q2GED0 GeneID:3931641 KEGG:nse:NSE_0275 PATRIC:22680643
ProtClustDB:CLSK2528126 BioCyc:NSEN222891:GHFU-302-MONOMER
Uniprot:Q2GED0
Length = 74
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSK 65
G+ V + + K+V V V R H Y + + T ++AHDE N G VR+ RP+S
Sbjct: 8 GVAVRDSLSKTVKVRVTRKVSHPKYKKVLHLTKSYLAHDEANVVRAGQVVRIQAVRPISA 67
Query: 66 HKHWAV 71
K W V
Sbjct: 68 RKAWLV 73
>UNIPROTKB|E9PE17 [details] [associations]
symbol:MRPS17 "28S ribosomal protein S17, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000266
Pfam:PF00366 ProDom:PD001295 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AC092579 HGNC:HGNC:14047 ChiTaRS:mRpS17 IPI:IPI00925656
ProteinModelPortal:E9PE17 SMR:E9PE17 Ensembl:ENST00000443449
ArrayExpress:E9PE17 Bgee:E9PE17 Uniprot:E9PE17
Length = 129
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 28/75 (37%), Positives = 38/75 (50%)
Query: 4 VVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSR-P 62
+VG V+ KMQK+ V V RL +Y + + AHD QC +GD V L P
Sbjct: 13 IVGKVIGTKMQKTAKVRVTRLVLDPYLLKYFNKRKTYFAHDALQQCTVGDIVLLRALPVP 72
Query: 63 LSKHKHWAVAEILKK 77
+KH +AEI+ K
Sbjct: 73 RAKHVKHELAEIVFK 87
>UNIPROTKB|Q9Y2R5 [details] [associations]
symbol:MRPS17 "28S ribosomal protein S17, mitochondrial"
species:9606 "Homo sapiens" [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0005763 "mitochondrial small ribosomal subunit"
evidence=NAS] [GO:0003735 "structural constituent of ribosome"
evidence=NAS] [GO:0006412 "translation" evidence=NAS]
InterPro:IPR000266 Pfam:PF00366 ProDom:PD001295 PROSITE:PS00056
GO:GO:0006412 eggNOG:COG5048 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 GO:GO:0005763
CTD:51373 HOGENOM:HOG000126812 HOVERGEN:HBG002498 OrthoDB:EOG4FTW22
EMBL:AF077035 EMBL:AB049950 EMBL:BC047445 EMBL:BC054031
IPI:IPI00744772 RefSeq:NP_057053.1 UniGene:Hs.44298
ProteinModelPortal:Q9Y2R5 SMR:Q9Y2R5 IntAct:Q9Y2R5 STRING:Q9Y2R5
PhosphoSite:Q9Y2R5 DMDM:13633951 PaxDb:Q9Y2R5 PRIDE:Q9Y2R5
Ensembl:ENST00000285298 GeneID:51373 KEGG:hsa:51373 UCSC:uc003trd.3
GeneCards:GC07P056019 HGNC:HGNC:14047 HPA:HPA047159 MIM:611980
neXtProt:NX_Q9Y2R5 PharmGKB:PA31002 InParanoid:Q9Y2R5
PhylomeDB:Q9Y2R5 ChiTaRS:mRpS17 GenomeRNAi:51373 NextBio:54859
ArrayExpress:Q9Y2R5 Bgee:Q9Y2R5 CleanEx:HS_MRPS17
Genevestigator:Q9Y2R5 GermOnline:ENSG00000154999 Uniprot:Q9Y2R5
Length = 130
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 28/75 (37%), Positives = 38/75 (50%)
Query: 4 VVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSR-P 62
+VG V+ KMQK+ V V RL +Y + + AHD QC +GD V L P
Sbjct: 13 IVGKVIGTKMQKTAKVRVTRLVLDPYLLKYFNKRKTYFAHDALQQCTVGDIVLLRALPVP 72
Query: 63 LSKHKHWAVAEILKK 77
+KH +AEI+ K
Sbjct: 73 RAKHVKHELAEIVFK 87
>UNIPROTKB|F1RIU0 [details] [associations]
symbol:LOC100624266 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR000266 Pfam:PF00366 ProDom:PD001295 GO:GO:0005739
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GeneTree:ENSGT00530000064130
OMA:ELAEIIF EMBL:FP102600 RefSeq:XP_003354569.1
Ensembl:ENSSSCT00000008496 GeneID:100624266 KEGG:ssc:100624266
Uniprot:F1RIU0
Length = 130
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 29/77 (37%), Positives = 38/77 (49%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSR 61
K VVG V+ MQK+ V V RL +Y + + AHD QC +GD V L
Sbjct: 11 KWVVGKVIGTAMQKTAKVRVTRLVLDPYLLKYFNKRKTYFAHDALQQCTVGDIVLLKALP 70
Query: 62 -PLSKHKHWAVAEILKK 77
P +KH +AEI+ K
Sbjct: 71 VPRTKHVKHELAEIIFK 87
>UNIPROTKB|E1C9H4 [details] [associations]
symbol:MRPS17 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR000266 Pfam:PF00366 ProDom:PD001295
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 CTD:51373
GeneTree:ENSGT00530000064130 OMA:ELAEIIF EMBL:AADN02025924
IPI:IPI00599443 RefSeq:NP_001185576.1 UniGene:Gga.9753
Ensembl:ENSGALT00000003748 GeneID:417538 KEGG:gga:417538
NextBio:20820823 Uniprot:E1C9H4
Length = 137
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/78 (38%), Positives = 40/78 (51%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLD--P 59
K +VG V+ KMQK+ V V RL ++ + + AHD QC +GD V L P
Sbjct: 11 KWIVGKVIGTKMQKTAKVRVTRLVLDPYLLKFFNKRKTYFAHDPLQQCVVGDIVLLKALP 70
Query: 60 SRPLSKHKHWAVAEILKK 77
R SKH +AEI+ K
Sbjct: 71 ERR-SKHVKHELAEIVFK 87
>UNIPROTKB|E2RAD3 [details] [associations]
symbol:MRPS17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000266 Pfam:PF00366 ProDom:PD001295
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GeneTree:ENSGT00530000064130 OMA:ELAEIIF EMBL:AAEX03004178
Ensembl:ENSCAFT00000016045 Uniprot:E2RAD3
Length = 142
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 28/77 (36%), Positives = 38/77 (49%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSR 61
K +VG V+ MQK+ V V RL +Y + + AHD QC +GD V L
Sbjct: 23 KWIVGKVIGTAMQKTAKVRVTRLVLDPYLLKYFNKRKTYFAHDALQQCTVGDIVLLKALP 82
Query: 62 -PLSKHKHWAVAEILKK 77
P +KH +AEI+ K
Sbjct: 83 VPRTKHVKHELAEIIFK 99
>UNIPROTKB|E1BF33 [details] [associations]
symbol:E1BF33 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000266 Pfam:PF00366
ProDom:PD001295 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GeneTree:ENSGT00530000064130 EMBL:DAAA02027671 IPI:IPI00824986
PRIDE:E1BF33 Ensembl:ENSBTAT00000001335 OMA:LISETTH
NextBio:20924996 Uniprot:E1BF33
Length = 130
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 28/77 (36%), Positives = 38/77 (49%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSR 61
K +VG V+ MQK+ V V RL +Y + + AHD QC +GD V L
Sbjct: 11 KWIVGKVIGTAMQKTAKVRVTRLVLDPYLLKYFNKQKTYFAHDALQQCTVGDIVLLKALP 70
Query: 62 -PLSKHKHWAVAEILKK 77
P +KH +AEI+ K
Sbjct: 71 VPRTKHVKHELAEIVFK 87
>UNIPROTKB|P82916 [details] [associations]
symbol:MRPS17 "28S ribosomal protein S17, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR000266 Pfam:PF00366 ProDom:PD001295 PROSITE:PS00056
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
EMBL:AY911326 EMBL:BC111630 IPI:IPI00695580 RefSeq:NP_001019671.1
UniGene:Bt.6390 ProteinModelPortal:P82916 IntAct:P82916
STRING:P82916 PRIDE:P82916 Ensembl:ENSBTAT00000010431 GeneID:508143
KEGG:bta:508143 CTD:51373 eggNOG:NOG327347
GeneTree:ENSGT00530000064130 HOGENOM:HOG000126812
HOVERGEN:HBG002498 InParanoid:P82916 OMA:ELAEIIF OrthoDB:EOG4FTW22
NextBio:20868373 Uniprot:P82916
Length = 130
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 28/77 (36%), Positives = 38/77 (49%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSR 61
K +VG V+ MQK+ V V RL +Y + + AHD QC +GD V L
Sbjct: 11 KWIVGKVIGTAMQKTAKVRVTRLVLDPYLLKYFNKRKTYFAHDALQQCTVGDIVLLKALP 70
Query: 62 -PLSKHKHWAVAEILKK 77
P +KH +AEI+ K
Sbjct: 71 VPRTKHVKHELAEIVFK 87
>ZFIN|ZDB-GENE-050522-390 [details] [associations]
symbol:zgc:110031 "zgc:110031" species:7955 "Danio
rerio" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
InterPro:IPR000266 Pfam:PF00366 ProDom:PD001295
ZFIN:ZDB-GENE-050522-390 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:NOG327347 GeneTree:ENSGT00530000064130 HOGENOM:HOG000126812
HOVERGEN:HBG002498 OMA:ELAEIIF OrthoDB:EOG4FTW22 EMBL:BX842703
EMBL:BC095143 IPI:IPI00483283 RefSeq:NP_001018395.1
UniGene:Dr.30886 STRING:Q503X4 Ensembl:ENSDART00000076320
GeneID:553580 KEGG:dre:553580 InParanoid:Q503X4 NextBio:20880318
Uniprot:Q503X4
Length = 136
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLD--P 59
K ++G V+ KM+K+ V V RL +Y + + AHD QC +GD V L P
Sbjct: 11 KWIIGQVIGTKMKKTAKVRVTRLVLDPYLLKYYNKRKTYFAHDALEQCTVGDIVLLKALP 70
Query: 60 SRPLSKHKHWAVAEILKK 77
+ +KH + +AEI+ K
Sbjct: 71 EKR-AKHVNHELAEIVYK 87
>CGD|CAL0005820 [details] [associations]
symbol:orf19.4176 species:5476 "Candida albicans" [GO:0005763
"mitochondrial small ribosomal subunit" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR000266 Pfam:PF00366 ProDom:PD001295 CGD:CAL0005820
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AACQ01000151
EMBL:AACQ01000146 eggNOG:COG0186 PANTHER:PTHR10744
RefSeq:XP_712630.1 RefSeq:XP_712780.1 ProteinModelPortal:Q59SJ6
STRING:Q59SJ6 GeneID:3645609 GeneID:3645755 KEGG:cal:CaO19.11652
KEGG:cal:CaO19.4176 Uniprot:Q59SJ6
Length = 246
Score = 113 (44.8 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 2 KSVVGLVVSN-KMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPS 60
++ VG+V+S KM K+V V V + K ++ + ++ HDE + C GD VR++
Sbjct: 4 QNFVGVVISQGKMTKTVKVRVQGRVYDKRVDKEILTRKDYLVHDEGSICKEGDIVRIESI 63
Query: 61 RPLSKHKHWAVAEI 74
+SK K +A+AEI
Sbjct: 64 PKISKRKAFAIAEI 77
>UNIPROTKB|I3L0E3 [details] [associations]
symbol:MRPS17 "28S ribosomal protein S17, mitochondrial"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR001909
InterPro:IPR000266 Pfam:PF00366 Pfam:PF01352 ProDom:PD001295
PROSITE:PS50805 SMART:SM00349 GO:GO:0006355 GO:GO:0006412
GO:GO:0003676 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CH471140 SUPFAM:SSF109640
EMBL:AC092579 UniGene:Hs.44298 ChiTaRS:mRpS17 EMBL:AC092647
UniGene:Hs.660834 SMR:I3L0E3 Ensembl:ENST00000426595 Uniprot:I3L0E3
Length = 225
Score = 112 (44.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 28/75 (37%), Positives = 38/75 (50%)
Query: 4 VVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSR-P 62
+VG V+ KMQK+ V V RL +Y + + AHD QC +GD V L P
Sbjct: 108 IVGKVIGTKMQKTAKVRVTRLVLDPYLLKYFNKRKTYFAHDALQQCTVGDIVLLRALPVP 167
Query: 63 LSKHKHWAVAEILKK 77
+KH +AEI+ K
Sbjct: 168 RAKHVKHELAEIVFK 182
>UNIPROTKB|Q9XSU4 [details] [associations]
symbol:RPS11 "40S ribosomal protein S11" species:9615
"Canis lupus familiaris" [GO:0019843 "rRNA binding" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000266 InterPro:IPR019978
InterPro:IPR019979 Pfam:PF00366 PRINTS:PR00973 PROSITE:PS00056
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 eggNOG:COG0186
PANTHER:PTHR10744 HOGENOM:HOG000231341 TIGRFAMs:TIGR03630
HOVERGEN:HBG004670 OrthoDB:EOG4MGS8N EMBL:CX985417 EMBL:AJ388520
UniGene:Cfa.39143 PDB:2ZKQ PDBsum:2ZKQ STRING:Q9XSU4
InParanoid:Q9XSU4 EvolutionaryTrace:Q9XSU4 Uniprot:Q9XSU4
Length = 158
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN--NQCNIGDRVRLDPSRPL 63
G+V KMQ+++V+ D L + + YNR+ KR H +IGD V + RPL
Sbjct: 75 GVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVHIGDIVTVGECRPL 134
Query: 64 SKHKHWAVAEILKKA 78
SK + V ++ K A
Sbjct: 135 SKTVRFNVLKVTKAA 149
>UNIPROTKB|Q9DF27 [details] [associations]
symbol:RS11 "40S ribosomal protein S11" species:8030 "Salmo
salar" [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS] InterPro:IPR000266 InterPro:IPR019978
InterPro:IPR019979 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 GO:GO:0006412 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0022627 PANTHER:PTHR10744
TIGRFAMs:TIGR03630 HOVERGEN:HBG004670 HSSP:P23828 EMBL:AF304161
EMBL:BT046932 EMBL:BT049673 EMBL:BT058141 EMBL:BT058210
EMBL:BT059841 EMBL:BT059910 RefSeq:NP_001117010.1 UniGene:Ssa.23455
ProteinModelPortal:Q9DF27 GeneID:100136373 Uniprot:Q9DF27
Length = 161
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAH--DENNQCNIGDRVRLDPSRPL 63
G+V KMQ+++V+ D L + + YNR+ KR H ++GD V + RPL
Sbjct: 78 GVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPAFRDVSVGDIVTVGECRPL 137
Query: 64 SKHKHWAVAEILKKA 78
SK + V ++ K A
Sbjct: 138 SKTVRFNVLKVTKAA 152
>POMBASE|SPAC144.11 [details] [associations]
symbol:rps1102 "40S ribosomal protein S11 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003735 "structural constituent of
ribosome" evidence=ISO] [GO:0006412 "translation" evidence=ISO]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000266
InterPro:IPR019978 InterPro:IPR019979 Pfam:PF00366 PRINTS:PR00973
ProDom:PD001295 PROSITE:PS00056 PomBase:SPAC31G5.03
PomBase:SPAC144.11 GO:GO:0005634 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0042254 GO:GO:0003735 GO:GO:0002181
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
KO:K02949 GO:GO:0022627 eggNOG:COG0186 PANTHER:PTHR10744
HOGENOM:HOG000231341 TIGRFAMs:TIGR03630 OMA:GAKKQFQ EMBL:AB000704
EMBL:U97382 PIR:T37678 RefSeq:NP_594003.1 RefSeq:NP_594672.1
ProteinModelPortal:P79013 SMR:P79013 IntAct:P79013 STRING:P79013
PRIDE:P79013 EnsemblFungi:SPAC144.11.1 EnsemblFungi:SPAC31G5.03.1
GeneID:2542904 GeneID:2543120 KEGG:spo:SPAC144.11
KEGG:spo:SPAC31G5.03 OrthoDB:EOG4NZZ3N NextBio:20803943
Uniprot:P79013
Length = 152
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 4 VVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAH-DENNQCNIGDRVRLDPSRP 62
+ G VVS KM +++++ + L YNRY KR AH + N GD V + RP
Sbjct: 68 LTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFRINEGDVVTVGQCRP 127
Query: 63 LSKHKHWAVAEILK 76
LSK + V ++K
Sbjct: 128 LSKTVRFNVLRVVK 141
>POMBASE|SPAC31G5.03 [details] [associations]
symbol:rps1101 "40S ribosomal protein S11 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003735 "structural constituent of
ribosome" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0022627
"cytosolic small ribosomal subunit" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=ISO] InterPro:IPR000266
InterPro:IPR019978 InterPro:IPR019979 Pfam:PF00366 PRINTS:PR00973
ProDom:PD001295 PROSITE:PS00056 PomBase:SPAC31G5.03
PomBase:SPAC144.11 GO:GO:0005634 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0042254 GO:GO:0003735 GO:GO:0002181
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
KO:K02949 GO:GO:0022627 eggNOG:COG0186 PANTHER:PTHR10744
HOGENOM:HOG000231341 TIGRFAMs:TIGR03630 OMA:GAKKQFQ EMBL:AB000704
EMBL:U97382 PIR:T37678 RefSeq:NP_594003.1 RefSeq:NP_594672.1
ProteinModelPortal:P79013 SMR:P79013 IntAct:P79013 STRING:P79013
PRIDE:P79013 EnsemblFungi:SPAC144.11.1 EnsemblFungi:SPAC31G5.03.1
GeneID:2542904 GeneID:2543120 KEGG:spo:SPAC144.11
KEGG:spo:SPAC31G5.03 OrthoDB:EOG4NZZ3N NextBio:20803943
Uniprot:P79013
Length = 152
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 4 VVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAH-DENNQCNIGDRVRLDPSRP 62
+ G VVS KM +++++ + L YNRY KR AH + N GD V + RP
Sbjct: 68 LTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFRINEGDVVTVGQCRP 127
Query: 63 LSKHKHWAVAEILK 76
LSK + V ++K
Sbjct: 128 LSKTVRFNVLRVVK 141
>UNIPROTKB|F1N9W9 [details] [associations]
symbol:RPS11 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IEA]
InterPro:IPR000266 InterPro:IPR019978 InterPro:IPR019979
Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295 PROSITE:PS00056
GO:GO:0006412 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0022627 PANTHER:PTHR10744 TIGRFAMs:TIGR03630
GeneTree:ENSGT00390000002732 OMA:LVTIGEC EMBL:AADN02055263
EMBL:AADN02055264 IPI:IPI00596603 Ensembl:ENSGALT00000036375
Uniprot:F1N9W9
Length = 108
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN--NQCNIGDRVRLDPSRPL 63
G+V KMQ+++V+ D L + + YNR+ KR H IGD V + RPL
Sbjct: 25 GVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPL 84
Query: 64 SKHKHWAVAEILKKA 78
SK + V ++ K A
Sbjct: 85 SKTVRFNVLKVTKAA 99
>UNIPROTKB|F1P553 [details] [associations]
symbol:RPS11 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IEA]
InterPro:IPR000266 InterPro:IPR019979 Pfam:PF00366 PRINTS:PR00973
ProDom:PD001295 PROSITE:PS00056 GO:GO:0006412 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0022627
PANTHER:PTHR10744 GeneTree:ENSGT00390000002732 EMBL:AADN02055263
EMBL:AADN02055264 IPI:IPI00823082 Ensembl:ENSGALT00000027954
Uniprot:F1P553
Length = 84
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN--NQCNIGDRVRLDPSRPL 63
G+V KMQ+++V+ D L + + YNR+ KR H IGD V + RPL
Sbjct: 1 GVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPL 60
Query: 64 SKHKHWAVAEILKKA 78
SK + V ++ K A
Sbjct: 61 SKTVRFNVLKVTKAA 75
>UNIPROTKB|Q3T0V4 [details] [associations]
symbol:RPS11 "40S ribosomal protein S11" species:9913 "Bos
taurus" [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000266 InterPro:IPR019978
InterPro:IPR019979 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 GO:GO:0006412 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 KO:K02949
GO:GO:0022627 eggNOG:COG0186 PANTHER:PTHR10744 HOGENOM:HOG000231341
TIGRFAMs:TIGR03630 GeneTree:ENSGT00390000002732 EMBL:AY911366
EMBL:BC102249 IPI:IPI00689811 RefSeq:NP_001019739.1 UniGene:Bt.3626
ProteinModelPortal:Q3T0V4 SMR:Q3T0V4 STRING:Q3T0V4 PRIDE:Q3T0V4
Ensembl:ENSBTAT00000018491 GeneID:539196 KEGG:bta:539196 CTD:6205
HOVERGEN:HBG004670 InParanoid:Q3T0V4 OMA:GAKKQFQ OrthoDB:EOG4MGS8N
NextBio:20877840 Uniprot:Q3T0V4
Length = 158
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN--NQCNIGDRVRLDPSRPL 63
G+V KMQ+++V+ D L + + YNR+ KR H IGD V + RPL
Sbjct: 75 GVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPL 134
Query: 64 SKHKHWAVAEILKKA 78
SK + V ++ K A
Sbjct: 135 SKTVRFNVLKVTKAA 149
>UNIPROTKB|F2Z4N5 [details] [associations]
symbol:RPS11 "40S ribosomal protein S11" species:9615
"Canis lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR000266
InterPro:IPR019978 InterPro:IPR019979 Pfam:PF00366 PRINTS:PR00973
ProDom:PD001295 PROSITE:PS00056 GO:GO:0006412 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 KO:K02949
GO:GO:0022627 PANTHER:PTHR10744 TIGRFAMs:TIGR03630
GeneTree:ENSGT00390000002732 CTD:6205 OMA:GAKKQFQ UniGene:Cfa.39143
EMBL:AAEX03000800 RefSeq:XP_533619.2 ProteinModelPortal:F2Z4N5
SMR:F2Z4N5 PRIDE:F2Z4N5 Ensembl:ENSCAFT00000022721 GeneID:403684
KEGG:cfa:403684 NextBio:20817188 Uniprot:F2Z4N5
Length = 158
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN--NQCNIGDRVRLDPSRPL 63
G+V KMQ+++V+ D L + + YNR+ KR H IGD V + RPL
Sbjct: 75 GVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPL 134
Query: 64 SKHKHWAVAEILKKA 78
SK + V ++ K A
Sbjct: 135 SKTVRFNVLKVTKAA 149
>UNIPROTKB|P62280 [details] [associations]
symbol:RPS11 "40S ribosomal protein S11" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840
"ribosome" evidence=NAS] [GO:0006412 "translation"
evidence=IC;NAS;TAS] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006413 "translational
initiation" evidence=TAS] [GO:0006414 "translational elongation"
evidence=TAS] [GO:0006415 "translational termination" evidence=TAS]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000266 InterPro:IPR019978 InterPro:IPR019979
Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295 PROSITE:PS00056
Reactome:REACT_116125 GO:GO:0000184 GO:GO:0006413 GO:GO:0003735
EMBL:CH471177 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0019843 KO:K02949 GO:GO:0006415 GO:GO:0006414 GO:GO:0022627
Reactome:REACT_1762 GO:GO:0006614 GO:GO:0019083 EMBL:AB028893
eggNOG:COG0186 PANTHER:PTHR10744 HOGENOM:HOG000231341
TIGRFAMs:TIGR03630 CTD:6205 HOVERGEN:HBG004670 OMA:GAKKQFQ
OrthoDB:EOG4MGS8N ChiTaRS:RPS11 EMBL:X06617 EMBL:AK311809
EMBL:BC007283 EMBL:BC007603 EMBL:BC007945 EMBL:BC010028
EMBL:BC016378 EMBL:BC070224 EMBL:BC100025 EMBL:AB007152
IPI:IPI00025091 PIR:S02133 RefSeq:NP_001006.1 UniGene:Hs.433529
ProteinModelPortal:P62280 SMR:P62280 IntAct:P62280
MINT:MINT-1154341 STRING:P62280 PhosphoSite:P62280 DMDM:50403609
SWISS-2DPAGE:P62280 PaxDb:P62280 PeptideAtlas:P62280 PRIDE:P62280
DNASU:6205 Ensembl:ENST00000270625 GeneID:6205 KEGG:hsa:6205
UCSC:uc002pob.1 GeneCards:GC19P049999 H-InvDB:HIX0037158
HGNC:HGNC:10384 HPA:HPA049719 MIM:180471 neXtProt:NX_P62280
PharmGKB:PA34782 InParanoid:P62280 PhylomeDB:P62280 GenomeRNAi:6205
NextBio:24099 PMAP-CutDB:P62280 Bgee:P62280 CleanEx:HS_RPS11
Genevestigator:P62280 GermOnline:ENSG00000142534 Uniprot:P62280
Length = 158
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN--NQCNIGDRVRLDPSRPL 63
G+V KMQ+++V+ D L + + YNR+ KR H IGD V + RPL
Sbjct: 75 GVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPL 134
Query: 64 SKHKHWAVAEILKKA 78
SK + V ++ K A
Sbjct: 135 SKTVRFNVLKVTKAA 149
>UNIPROTKB|F2Z4Y8 [details] [associations]
symbol:RPS11 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR000266 InterPro:IPR019978 InterPro:IPR019979
Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295 PROSITE:PS00056
GO:GO:0006412 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 KO:K02949 GO:GO:0022627 PANTHER:PTHR10744
TIGRFAMs:TIGR03630 GeneTree:ENSGT00390000002732 CTD:6205
OMA:GAKKQFQ EMBL:FP102665 RefSeq:NP_001230999.1 UniGene:Ssc.54656
UniGene:Ssc.75385 SMR:F2Z4Y8 Ensembl:ENSSSCT00000003515
GeneID:100513660 KEGG:ssc:100513660 Uniprot:F2Z4Y8
Length = 158
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN--NQCNIGDRVRLDPSRPL 63
G+V KMQ+++V+ D L + + YNR+ KR H IGD V + RPL
Sbjct: 75 GVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPL 134
Query: 64 SKHKHWAVAEILKKA 78
SK + V ++ K A
Sbjct: 135 SKTVRFNVLKVTKAA 149
>UNIPROTKB|A0EZU4 [details] [associations]
symbol:A0EZU4 "40S ribosomal protein S11" species:52904
"Scophthalmus maximus" [GO:0022627 "cytosolic small ribosomal
subunit" evidence=ISS] InterPro:IPR000266 InterPro:IPR019978
InterPro:IPR019979 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 GO:GO:0006412 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0022627 PANTHER:PTHR10744
TIGRFAMs:TIGR03630 EMBL:DQ848873 ProteinModelPortal:A0EZU4
SMR:A0EZU4 Uniprot:A0EZU4
Length = 161
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN--NQCNIGDRVRLDPSRPL 63
G+V KMQ+++V+ D L + + YNR+ KR H ++GD V + RPL
Sbjct: 78 GVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNISVHLSPCFRDVSVGDIVTVGECRPL 137
Query: 64 SKHKHWAVAEILKKA 78
SK + V ++ K A
Sbjct: 138 SKTVRFNVLKVTKAA 152
>UNIPROTKB|A2Q0S6 [details] [associations]
symbol:rpS11 "Ribosomal protein S11" species:28829 "Solea
senegalensis" [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS] InterPro:IPR000266 InterPro:IPR019978
InterPro:IPR019979 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 GO:GO:0006412 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0022627 PANTHER:PTHR10744
TIGRFAMs:TIGR03630 HOVERGEN:HBG004670 EMBL:AB291564
ProteinModelPortal:A2Q0S6 SMR:A2Q0S6 Uniprot:A2Q0S6
Length = 161
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN--NQCNIGDRVRLDPSRPL 63
G+V KMQ+++V+ D L + + YNR+ KR H ++GD V + RPL
Sbjct: 78 GVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNLSVHLSPCFRDVSVGDIVTVGECRPL 137
Query: 64 SKHKHWAVAEILKKA 78
SK + V ++ K A
Sbjct: 138 SKTVRFNVLKVTKAA 152
>MGI|MGI:1351329 [details] [associations]
symbol:Rps11 "ribosomal protein S11" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000266 InterPro:IPR019978 InterPro:IPR019979
Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295 PROSITE:PS00056
MGI:MGI:1351329 GO:GO:0006412 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843 KO:K02949
GO:GO:0022627 eggNOG:COG0186 PANTHER:PTHR10744 HOGENOM:HOG000231341
TIGRFAMs:TIGR03630 CTD:6205 HOVERGEN:HBG004670 OMA:GAKKQFQ
ChiTaRS:RPS11 EMBL:U93864 EMBL:AB028894 EMBL:BC012641
IPI:IPI00762542 RefSeq:NP_038753.1 UniGene:Mm.196538
UniGene:Mm.389435 ProteinModelPortal:P62281 SMR:P62281
DIP:DIP-59975N STRING:P62281 PhosphoSite:P62281 PaxDb:P62281
PRIDE:P62281 Ensembl:ENSMUST00000003521 GeneID:27207 KEGG:mmu:27207
NextBio:305079 Bgee:P62281 CleanEx:MM_RPS11 Genevestigator:P62281
GermOnline:ENSMUSG00000003429 Uniprot:P62281
Length = 158
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN--NQCNIGDRVRLDPSRPL 63
G+V KMQ+++V+ D L + + YNR+ KR H IGD V + RPL
Sbjct: 75 GVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPL 134
Query: 64 SKHKHWAVAEILKKA 78
SK + V ++ K A
Sbjct: 135 SKTVRFNVLKVTKAA 149
>RGD|621026 [details] [associations]
symbol:Rps11 "ribosomal protein S11" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISO;IDA] InterPro:IPR000266 InterPro:IPR019978
InterPro:IPR019979 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 RGD:621026 GO:GO:0006412 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
KO:K02949 GO:GO:0022627 eggNOG:COG0186 PANTHER:PTHR10744
HOGENOM:HOG000231341 TIGRFAMs:TIGR03630
GeneTree:ENSGT00390000002732 CTD:6205 HOVERGEN:HBG004670
OrthoDB:EOG4MGS8N EMBL:K03250 IPI:IPI00197713 PIR:A22618
RefSeq:NP_112372.1 UniGene:Rn.2177 ProteinModelPortal:P62282
SMR:P62282 IntAct:P62282 STRING:P62282 PRIDE:P62282
Ensembl:ENSRNOT00000066328 GeneID:81774 KEGG:rno:81774
UCSC:RGD:621026 InParanoid:P62282 NextBio:615597
ArrayExpress:P62282 Genevestigator:P62282
GermOnline:ENSRNOG00000020595 Uniprot:P62282
Length = 158
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN--NQCNIGDRVRLDPSRPL 63
G+V KMQ+++V+ D L + + YNR+ KR H IGD V + RPL
Sbjct: 75 GVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPL 134
Query: 64 SKHKHWAVAEILKKA 78
SK + V ++ K A
Sbjct: 135 SKTVRFNVLKVTKAA 149
>WB|WBGene00004480 [details] [associations]
symbol:rps-11 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0008340 "determination
of adult lifespan" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0019915
"lipid storage" evidence=IMP] [GO:0018996 "molting cycle, collagen
and cuticulin-based cuticle" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] InterPro:IPR000266 InterPro:IPR019978
InterPro:IPR019979 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0006915 GO:GO:0002119 GO:GO:0006412 GO:GO:0018996
GO:GO:0000003 GO:GO:0005840 GO:GO:0019915 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 KO:K02949
eggNOG:COG0186 PANTHER:PTHR10744 HOGENOM:HOG000231341
TIGRFAMs:TIGR03630 GeneTree:ENSGT00390000002732 HSSP:P23828
EMBL:Z73426 PIR:T22027 RefSeq:NP_502186.1 ProteinModelPortal:Q20206
SMR:Q20206 DIP:DIP-26076N MINT:MINT-1096800 STRING:Q20206
PaxDb:Q20206 EnsemblMetazoa:F40F11.1.1 EnsemblMetazoa:F40F11.1.2
GeneID:178083 KEGG:cel:CELE_F40F11.1 UCSC:F40F11.1.1 CTD:178083
WormBase:F40F11.1 InParanoid:Q20206 OMA:LVTIGEC NextBio:899642
Uniprot:Q20206
Length = 155
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 28/75 (37%), Positives = 40/75 (53%)
Query: 4 VVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNI--GDRVRLDPSR 61
+ G+V+ NKM +++VV D L + K Y RY KR AH +I GD V + R
Sbjct: 70 LTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPGDLVTIGECR 129
Query: 62 PLSKHKHWAVAEILK 76
PLSK + V ++ K
Sbjct: 130 PLSKTVRFNVLKVNK 144
>UNIPROTKB|J9P7F5 [details] [associations]
symbol:J9P7F5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000266 InterPro:IPR019978
InterPro:IPR019979 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
PANTHER:PTHR10744 TIGRFAMs:TIGR03630 OMA:HVTIGQC
GeneTree:ENSGT00390000002732 EMBL:AAEX03007951
Ensembl:ENSCAFT00000029744 Uniprot:J9P7F5
Length = 158
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN--NQCNIGDRVRLDPSRPL 63
G+V KMQ+++V+ D L + + YNR+ K + H IGD V + RPL
Sbjct: 75 GVVTKMKMQRTIVICQDYLHYIRKYNRFEKTHKNMLVHLSPCFRDVQIGDIVTVGECRPL 134
Query: 64 SKHKHWAVAEILKKA 78
SK + V ++ K A
Sbjct: 135 SKTVRFNVLKVTKAA 149
>UNIPROTKB|Q90YR3 [details] [associations]
symbol:Q90YR3 "40S ribosomal protein S11" species:7998
"Ictalurus punctatus" [GO:0022627 "cytosolic small ribosomal
subunit" evidence=ISS] InterPro:IPR000266 InterPro:IPR019978
InterPro:IPR019979 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 GO:GO:0006412 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0022627 PANTHER:PTHR10744
TIGRFAMs:TIGR03630 HOVERGEN:HBG004670 HSSP:P23828 EMBL:AF402819
RefSeq:NP_001187218.1 UniGene:Ipu.58 ProteinModelPortal:Q90YR3
GeneID:100305055 Uniprot:Q90YR3
Length = 159
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN--NQCNIGDRVRLDPSRPL 63
G+V KMQ+++V+ D L + + YNR+ KR H +GD V + RPL
Sbjct: 76 GVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVTVGDIVTVGECRPL 135
Query: 64 SKHKHWAVAEILKKA 78
SK + V ++ K A
Sbjct: 136 SKTVRFNVLKVTKAA 150
>MGI|MGI:1913508 [details] [associations]
symbol:Mrps17 "mitochondrial ribosomal protein S17"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000266
Pfam:PF00366 ProDom:PD001295 PROSITE:PS00056 MGI:MGI:1913508
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
CTD:51373 eggNOG:NOG327347 GeneTree:ENSGT00530000064130
HOGENOM:HOG000126812 HOVERGEN:HBG002498 OMA:ELAEIIF
OrthoDB:EOG4FTW22 EMBL:AB049951 EMBL:AK009568 EMBL:AK003008
EMBL:AK007356 EMBL:BC003890 IPI:IPI00132448 RefSeq:NP_079726.1
UniGene:Mm.249809 ProteinModelPortal:Q9CQE3 SMR:Q9CQE3
STRING:Q9CQE3 PhosphoSite:Q9CQE3 PaxDb:Q9CQE3 PRIDE:Q9CQE3
Ensembl:ENSMUST00000042191 Ensembl:ENSMUST00000118420
Ensembl:ENSMUST00000119576 Ensembl:ENSMUST00000119604
Ensembl:ENSMUST00000119985 Ensembl:ENSMUST00000121339
Ensembl:ENSMUST00000121813 GeneID:66258 KEGG:mmu:66258
UCSC:uc008ztb.1 InParanoid:Q9CQE3 NextBio:321117 Bgee:Q9CQE3
CleanEx:MM_MRPS17 Genevestigator:Q9CQE3
GermOnline:ENSMUSG00000034211 Uniprot:Q9CQE3
Length = 120
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/77 (36%), Positives = 37/77 (48%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSR 61
K VVG V+ M K+ V RL +Y + + AHD QC++GD V L
Sbjct: 11 KWVVGKVIGTAMIKTAKVRATRLVLDPYLLKYFNKRKTYFAHDALQQCSVGDIVLLRALP 70
Query: 62 -PLSKHKHWAVAEILKK 77
P SKH +AEI+ K
Sbjct: 71 VPRSKHVKHELAEIIFK 87
>ZFIN|ZDB-GENE-040426-2701 [details] [associations]
symbol:rps11 "ribosomal protein S11" species:7955
"Danio rerio" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000266 InterPro:IPR019978 InterPro:IPR019979
Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295 PROSITE:PS00056
ZFIN:ZDB-GENE-040426-2701 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 KO:K02949
PANTHER:PTHR10744 TIGRFAMs:TIGR03630 GeneTree:ENSGT00390000002732
CTD:6205 HOVERGEN:HBG004670 OMA:GAKKQFQ HSSP:P23828 EMBL:CR388062
EMBL:BC046054 EMBL:BC159194 IPI:IPI00492036 RefSeq:NP_998542.1
UniGene:Dr.75616 STRING:Q7ZV05 Ensembl:ENSDART00000075028
GeneID:406686 KEGG:dre:406686 InParanoid:Q7ZV05 NextBio:20818213
Uniprot:Q7ZV05
Length = 159
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN--NQCNIGDRVRLDPSRPL 63
G+V KMQ+++V+ D L + + YNR+ KR H +GD V + RPL
Sbjct: 76 GVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVTVGDIVTVGECRPL 135
Query: 64 SKHKHWAVAEILKKA 78
SK + V ++ K A
Sbjct: 136 SKTVRFNVLKVTKAA 150
>DICTYBASE|DDB_G0282601 [details] [associations]
symbol:rps11 "40S ribosomal protein S11"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0005840 "ribosome" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0003735 "structural constituent
of ribosome" evidence=IEA;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000266 InterPro:IPR019978 InterPro:IPR019979
Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295 PROSITE:PS00056
dictyBase:DDB_G0282601 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 KO:K02949 eggNOG:COG0186
PANTHER:PTHR10744 TIGRFAMs:TIGR03630 OMA:GAKKQFQ RefSeq:XP_640149.1
ProteinModelPortal:Q54S90 SMR:Q54S90 STRING:Q54S90 PRIDE:Q54S90
EnsemblProtists:DDB0230027 GeneID:8623687 KEGG:ddi:DDB_G0282601
ProtClustDB:PTZ00241 Uniprot:Q54S90
Length = 155
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNI--GDRVRLDPSRPL 63
G V+S KM++++VV + L + K YNR+ KR S AH + N+ GD V + RPL
Sbjct: 73 GTVISTKMRRTLVVRRNYLHYIKKYNRFEKRHSNIPAH-VSPAFNVKEGDSVTIGQCRPL 131
Query: 64 SK 65
SK
Sbjct: 132 SK 133
>TAIR|locus:2126639 [details] [associations]
symbol:AT4G30800 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0022627 "cytosolic small
ribosomal subunit" evidence=ISS;IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009909 "regulation of flower development" evidence=RCA]
[GO:0034968 "histone lysine methylation" evidence=RCA]
InterPro:IPR000266 InterPro:IPR019978 InterPro:IPR019979
Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295 PROSITE:PS00056
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006412 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL022198
EMBL:AL161577 GO:GO:0019843 KO:K02949 GO:GO:0022627 eggNOG:COG0186
PANTHER:PTHR10744 HOGENOM:HOG000231341 ProtClustDB:CLSN2684220
TIGRFAMs:TIGR03630 EMBL:AY046037 EMBL:AY091204 IPI:IPI00548018
PIR:E85360 RefSeq:NP_194809.1 UniGene:At.2164
ProteinModelPortal:O65569 SMR:O65569 STRING:O65569 PaxDb:O65569
PRIDE:O65569 EnsemblPlants:AT4G30800.1 GeneID:829203
KEGG:ath:AT4G30800 TAIR:At4g30800 InParanoid:O65569 OMA:HVTIGQC
PhylomeDB:O65569 Genevestigator:O65569 GermOnline:AT4G30800
Uniprot:O65569
Length = 159
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 27/71 (38%), Positives = 37/71 (52%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAH-DENNQCNIGDRVRLDPSRPLS 64
G S KMQ++++V D L K Y RY KR S AH + GDRV + RPLS
Sbjct: 74 GTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKEGDRVTIGQCRPLS 133
Query: 65 KHKHWAVAEIL 75
K + V +++
Sbjct: 134 KTVRFNVLKVI 144
>GENEDB_PFALCIPARUM|PFC0775w [details] [associations]
symbol:PFC0775w "40S ribosomal protein S11,
putative" species:5833 "Plasmodium falciparum" [GO:0022627
"cytosolic small ribosomal subunit" evidence=ISS]
InterPro:IPR000266 InterPro:IPR019978 InterPro:IPR019979
Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295 PROSITE:PS00056
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL844502 KO:K02949
PANTHER:PTHR10744 HOGENOM:HOG000231341 OMA:HIIIGQC
TIGRFAMs:TIGR03630 ProtClustDB:PTZ00241 PIR:T18498
RefSeq:XP_001351246.1 ProteinModelPortal:O77381 SMR:O77381
IntAct:O77381 MINT:MINT-1592353 PRIDE:O77381
EnsemblProtists:PFC0775w:mRNA GeneID:814490 KEGG:pfa:PFC0775w
EuPathDB:PlasmoDB:PF3D7_0317600 Uniprot:O77381
Length = 161
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAH-DENNQCNIGDRVRLDPSRPLS 64
G+V+SNKM++++++ + L + K YNR+ KR H GD V + RPLS
Sbjct: 76 GMVISNKMKRTIIIRRNYLHYVKKYNRFEKRHKNIPCHCSPCFDVKEGDIVTVGQCRPLS 135
Query: 65 KHKHWAVAEILKKARIY 81
K + V + +K +I+
Sbjct: 136 KTVRFNVLHV-EKHQIF 151
>RGD|1307650 [details] [associations]
symbol:Mrps17 "mitochondrial ribosomal protein S17"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000266 Pfam:PF00366
ProDom:PD001295 RGD:1307650 GO:GO:0006412 GO:GO:0005840
EMBL:CH473973 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 CTD:51373 GeneTree:ENSGT00530000064130
OrthoDB:EOG4FTW22 IPI:IPI00763615 RefSeq:NP_001099393.1
UniGene:Rn.3292 Ensembl:ENSRNOT00000001229 GeneID:288621
KEGG:rno:288621 NextBio:628439 Uniprot:D3ZTR1
Length = 127
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 27/77 (35%), Positives = 37/77 (48%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSR 61
K VVG V+ M K+ V RL +Y + + AHD QC++GD V L
Sbjct: 11 KWVVGKVIGTAMVKTAKVRATRLVLDPYLLKYFNKRKTYFAHDALQQCSVGDIVLLRALP 70
Query: 62 -PLSKHKHWAVAEILKK 77
P +KH +AEI+ K
Sbjct: 71 VPRAKHVKHELAEIIFK 87
>ASPGD|ASPL0000026885 [details] [associations]
symbol:AN5222 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IEA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0000028
"ribosomal small subunit assembly" evidence=IEA] [GO:0000462
"maturation of SSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] InterPro:IPR000266
InterPro:IPR019978 InterPro:IPR019979 Pfam:PF00366 PRINTS:PR00973
ProDom:PD001295 PROSITE:PS00056 GO:GO:0006412 GO:GO:0005840
EMBL:BN001305 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:AACD01000089 KO:K02949 eggNOG:COG0186
PANTHER:PTHR10744 HOGENOM:HOG000231341 OMA:HIIIGQC
TIGRFAMs:TIGR03630 OrthoDB:EOG4NZZ3N RefSeq:XP_662826.1
ProteinModelPortal:Q5B2K8 SMR:Q5B2K8 STRING:Q5B2K8
EnsemblFungi:CADANIAT00003221 GeneID:2871514 KEGG:ani:AN5222.2
Uniprot:Q5B2K8
Length = 160
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 4 VVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAH-DENNQCNIGDRVRLDPSRP 62
+ G VVS KM +++++ + L + YNRY KR AH + GD V + RP
Sbjct: 75 LTGRVVSTKMHRTIIIRREYLHYVPKYNRYEKRHKNLAAHVSPAFRVEEGDWVTVGQCRP 134
Query: 63 LSKHKHWAVAEILKK 77
LSK + V +L +
Sbjct: 135 LSKTVRFNVLRVLPR 149
>SGD|S000002432 [details] [associations]
symbol:RPS11A "Protein component of the small (40S) ribosomal
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000028 "ribosomal small subunit
assembly" evidence=IMP] [GO:0030686 "90S preribosome" evidence=IDA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA;IDA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IGI]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0002181 "cytoplasmic translation" evidence=IC] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
InterPro:IPR000266 InterPro:IPR019978 InterPro:IPR019979
Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295 PROSITE:PS00056
SGD:S000002432 EMBL:BK006938 GO:GO:0003735 GO:GO:0002181
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0019843
GO:GO:0000028 GO:GO:0030686 EMBL:X95966 KO:K10570
RefSeq:NP_010308.3 GeneID:851589 KEGG:sce:YDR025W KO:K02949
GO:GO:0000462 PDB:1S1H PDBsum:1S1H GO:GO:0022627 PDB:3IZB PDB:3O2Z
PDB:3O30 PDB:3U5C PDB:3U5G PDBsum:3IZB PDBsum:3O2Z PDBsum:3O30
PDBsum:3U5C PDBsum:3U5G EMBL:Z47814 RefSeq:NP_010313.3
GeneID:851594 KEGG:sce:YDR030C PANTHER:PTHR10744 TIGRFAMs:TIGR03630
EMBL:L15408 EMBL:Z74321 PIR:S41784 RefSeq:NP_009604.1 PDB:1K5X
PDBsum:1K5X ProteinModelPortal:P0CX47 SMR:P0CX47
EnsemblFungi:YBR048W EnsemblFungi:YDR025W GeneID:852337
KEGG:sce:YBR048W CYGD:YDR025w EvolutionaryTrace:P0CX47
NextBio:969066 ArrayExpress:P0CX47 GermOnline:YDR025W
Uniprot:P0CX47
Length = 156
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAH-DENNQCNIGDRVRLDPS 60
K + G VVS KM +++V+ L + YNRY KR H + +GD V +
Sbjct: 69 KILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQC 128
Query: 61 RPLSKHKHWAVAEI 74
RP+SK + V ++
Sbjct: 129 RPISKTVRFNVVKV 142
>SGD|S000000252 [details] [associations]
symbol:RPS11B "Protein component of the small (40S) ribosomal
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0000028
"ribosomal small subunit assembly" evidence=IMP] [GO:0030686 "90S
preribosome" evidence=IDA] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=IDA] [GO:0000462 "maturation of SSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IGI] [GO:0002181 "cytoplasmic translation" evidence=IC]
[GO:0003735 "structural constituent of ribosome" evidence=IEA;IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000266
InterPro:IPR019978 InterPro:IPR019979 Pfam:PF00366 PRINTS:PR00973
ProDom:PD001295 PROSITE:PS00056 SGD:S000000252 EMBL:BK006936
GO:GO:0003735 GO:GO:0002181 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0019843 GO:GO:0000028 GO:GO:0030686 KO:K10570
RefSeq:NP_010308.3 GeneID:851589 KEGG:sce:YDR025W KO:K02949
GO:GO:0000462 GO:GO:0022627 EMBL:Z46260 RefSeq:NP_010313.3
GeneID:851594 KEGG:sce:YDR030C EMBL:Z35918 PANTHER:PTHR10744
TIGRFAMs:TIGR03630 PIR:S41784 RefSeq:NP_009604.1
EnsemblFungi:YBR048W EnsemblFungi:YDR025W GeneID:852337
KEGG:sce:YBR048W NextBio:969066 EMBL:L17004 EMBL:Z35917
ProteinModelPortal:P0CX48 SMR:P0CX48 CYGD:YBR048w
GeneTree:ENSGT00390000002732 ArrayExpress:P0CX48 GermOnline:YBR048W
Uniprot:P0CX48
Length = 156
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAH-DENNQCNIGDRVRLDPS 60
K + G VVS KM +++V+ L + YNRY KR H + +GD V +
Sbjct: 69 KILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQC 128
Query: 61 RPLSKHKHWAVAEI 74
RP+SK + V ++
Sbjct: 129 RPISKTVRFNVVKV 142
>TAIR|locus:2101278 [details] [associations]
symbol:EMB1080 "embryo defective 1080" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=ISS;IDA] [GO:0022626 "cytosolic ribosome"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000266
InterPro:IPR019978 InterPro:IPR019979 Pfam:PF00366 PRINTS:PR00973
ProDom:PD001295 PROSITE:PS00056 GO:GO:0009506 GO:GO:0005618
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016020 EMBL:AL132967
GO:GO:0006412 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0019843 KO:K02949 GO:GO:0022627
eggNOG:COG0186 PANTHER:PTHR10744 EMBL:J05216 EMBL:L28828
EMBL:AY059947 EMBL:AY081614 EMBL:AY088032 IPI:IPI00541286
PIR:C35542 RefSeq:NP_190462.1 UniGene:At.20778 UniGene:At.21301
ProteinModelPortal:P16181 SMR:P16181 STRING:P16181 PaxDb:P16181
PRIDE:P16181 EnsemblPlants:AT3G48930.1 GeneID:824054
KEGG:ath:AT3G48930 TAIR:At3g48930 HOGENOM:HOG000231341
InParanoid:P16181 OMA:HIIIGQC PhylomeDB:P16181
ProtClustDB:CLSN2684220 Genevestigator:P16181 GermOnline:AT3G48930
TIGRFAMs:TIGR03630 Uniprot:P16181
Length = 160
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 4 VVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAH-DENNQCNIGDRVRLDPSRP 62
+ G S KMQ++++V D L K Y RY KR S AH + GD + + RP
Sbjct: 72 LAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHIIIGQCRP 131
Query: 63 LSKHKHWAVAEIL 75
LSK + V +++
Sbjct: 132 LSKTVRFNVLKVI 144
>TAIR|locus:2172783 [details] [associations]
symbol:RPS11-BETA "ribosomal protein S11-beta"
species:3702 "Arabidopsis thaliana" [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS] [GO:0016020 "membrane" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] InterPro:IPR000266 InterPro:IPR019978
InterPro:IPR019979 Pfam:PF00366 PRINTS:PR00973 ProDom:PD001295
PROSITE:PS00056 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0016020 GO:GO:0006412 EMBL:AB005244 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0019843 KO:K02949 eggNOG:COG0186 PANTHER:PTHR10744
UniGene:At.20778 HOGENOM:HOG000231341 ProtClustDB:CLSN2684220
TIGRFAMs:TIGR03630 EMBL:L07877 EMBL:AF360280 EMBL:AY062955
EMBL:AY087240 IPI:IPI00536907 RefSeq:NP_197763.1 UniGene:At.21971
ProteinModelPortal:P42733 SMR:P42733 STRING:P42733 PaxDb:P42733
PRIDE:P42733 EnsemblPlants:AT5G23740.1 GeneID:832439
KEGG:ath:AT5G23740 TAIR:At5g23740 InParanoid:P42733 OMA:ERYERRT
PhylomeDB:P42733 Genevestigator:P42733 GermOnline:AT5G23740
Uniprot:P42733
Length = 159
Score = 90 (36.7 bits), Expect = 0.00024, P = 0.00024
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 4 VVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAH-DENNQCNIGDRVRLDPSRP 62
+ G S KMQ++++V + L K Y RY KR S AH + GD V + RP
Sbjct: 72 LAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRP 131
Query: 63 LSKHKHWAVAEIL 75
LSK + V +++
Sbjct: 132 LSKTVRFNVLKVI 144
>UNIPROTKB|Q292D0 [details] [associations]
symbol:RpS11 "40S ribosomal protein S11" species:46245
"Drosophila pseudoobscura pseudoobscura" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000266 InterPro:IPR019979 Pfam:PF00366 PRINTS:PR00973
ProDom:PD001295 PROSITE:PS00056 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:CM000071 GenomeReviews:CM000071_GR GO:GO:0019843 KO:K02949
eggNOG:COG0186 PANTHER:PTHR10744 OrthoDB:EOG40K6G8
RefSeq:XP_001360357.2 GeneID:4803680 KEGG:dpo:Dpse_GA21371
FlyBase:FBgn0081359 InParanoid:Q292D0 Uniprot:Q292D0
Length = 155
Score = 87 (35.7 bits), Expect = 0.00049, P = 0.00049
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 4 VVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNI--GDRVRLDPSR 61
++G+V KMQ+++V+ D L + Y+R+ KR H ++ GD V + R
Sbjct: 70 LIGVVRKTKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPAFRDVEHGDIVTIGECR 129
Query: 62 PLSKHKHWAVAEILK 76
PLSK + V ++ K
Sbjct: 130 PLSKTVRFNVLKVNK 144
>ZFIN|ZDB-GENE-081105-168 [details] [associations]
symbol:si:dkey-159f12.2 "si:dkey-159f12.2"
species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000266 Pfam:PF00366
PRINTS:PR00973 ProDom:PD001295 ZFIN:ZDB-GENE-081105-168
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG0186 PANTHER:PTHR10744
GeneTree:ENSGT00390000002732 HOVERGEN:HBG004670 OrthoDB:EOG4MGS8N
EMBL:CR936926 IPI:IPI00882845 Ensembl:ENSDART00000137968
Uniprot:A9C3W5
Length = 172
Score = 87 (35.7 bits), Expect = 0.00072, P = 0.00072
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 6 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN--NQCNIGDRVRLDPSRPL 63
G+V KMQ+++V+ D L + + YNR+ KR H +GD V + + L
Sbjct: 76 GVVTKMKMQRTIVIRRDNLHYIRKYNRFEKRHKNMSVHLSPCFRDVTVGDIVTVGEWQTL 135
Query: 64 SKHKHWAVAEILK 76
SK + V ++ K
Sbjct: 136 SKTVRFNVLKVTK 148
>UNIPROTKB|F1LU15 [details] [associations]
symbol:F1LU15 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000266
Pfam:PF00366 ProDom:PD001295 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GeneTree:ENSGT00530000064130 IPI:IPI00569374
Ensembl:ENSRNOT00000046960 Uniprot:F1LU15
Length = 144
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 26/81 (32%), Positives = 36/81 (44%)
Query: 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDP-S 60
K VVG V+ M K+ V RL +Y + + AH+ QC++G+ V L
Sbjct: 20 KWVVGKVIGTAMVKTAKVGATRLVLDPYLPKYFNKRKTYFAHNALQQCSVGNVVLLRALP 79
Query: 61 RPLSKH-KHWAVAEILKKARI 80
P SK KH I K R+
Sbjct: 80 APRSKLVKHELAKIIFKVGRV 100
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.129 0.369 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 106 91 0.00091 102 3 11 22 0.44 29
29 0.39 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 65
No. of states in DFA: 541 (58 KB)
Total size of DFA: 107 KB (2073 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.00u 0.11s 9.11t Elapsed: 00:00:01
Total cpu time: 9.00u 0.11s 9.11t Elapsed: 00:00:01
Start: Fri May 10 12:04:01 2013 End: Fri May 10 12:04:02 2013