Query 034020
Match_columns 106
No_of_seqs 131 out of 1020
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 14:57:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qd7_I S17 ribosomal protein; 100.0 5.5E-40 1.9E-44 223.1 11.3 80 2-81 3-82 (89)
2 3r8n_Q 30S ribosomal protein S 100.0 4.2E-38 1.4E-42 210.0 6.3 77 2-78 3-79 (80)
3 2vqe_Q 30S ribosomal protein S 100.0 5.2E-37 1.8E-41 213.8 10.0 79 2-80 4-82 (105)
4 3j20_R 30S ribosomal protein S 100.0 8.2E-36 2.8E-40 210.1 12.2 78 2-79 32-110 (113)
5 3bbn_Q Ribosomal protein S17; 100.0 3.6E-36 1.2E-40 218.8 10.2 79 1-79 60-138 (142)
6 2xzm_Q Ribosomal protein S17 c 100.0 2.6E-34 9E-39 211.9 11.9 78 2-79 68-146 (157)
7 3u5c_L RP41, S18, YS12, 40S ri 100.0 5.2E-34 1.8E-38 210.1 11.0 78 2-79 69-147 (156)
8 2zkq_q 40S ribosomal protein S 100.0 6.2E-34 2.1E-38 210.1 9.3 77 2-78 71-149 (158)
9 3iz6_P 40S ribosomal protein S 100.0 8E-34 2.7E-38 210.0 -6.2 78 2-79 70-148 (161)
10 2ot2_A Hydrogenase isoenzymes 36.7 19 0.00064 23.6 2.0 21 43-63 36-56 (90)
11 3u5c_c S33, YS27, 40S ribosoma 33.7 29 0.00099 21.8 2.5 23 39-61 38-60 (67)
12 2vl6_A SSO MCM N-TER, minichro 33.5 29 0.00098 25.8 2.8 24 36-59 211-235 (268)
13 1g31_A GP31; chaperone, CO-cha 32.8 66 0.0022 21.8 4.3 16 45-60 59-74 (111)
14 1jt8_A EIF-1A, probable transl 31.6 1.1E+02 0.0038 20.1 6.9 51 3-67 21-77 (102)
15 1ltl_A DNA replication initiat 31.1 34 0.0012 25.6 2.9 25 36-60 198-223 (279)
16 1a62_A RHO; transcription term 30.4 69 0.0024 21.7 4.2 33 48-80 90-122 (130)
17 2qcp_X Cation efflux system pr 30.2 63 0.0022 20.1 3.7 64 4-74 10-76 (80)
18 2v1q_A SLA1, cytoskeleton asse 28.5 34 0.0012 18.9 2.0 21 40-60 11-32 (60)
19 3iuw_A Activating signal coint 27.4 33 0.0011 22.1 2.0 45 33-77 22-66 (83)
20 2dgy_A MGC11102 protein; EIF-1 27.0 1.4E+02 0.0049 19.9 7.9 51 3-67 16-72 (111)
21 2vb2_X Copper protein, cation 26.9 76 0.0026 20.1 3.7 64 4-74 18-84 (88)
22 2lj0_A Sorbin and SH3 domain-c 26.1 24 0.00084 20.9 1.1 21 40-60 15-36 (65)
23 3j20_X 30S ribosomal protein S 25.6 35 0.0012 21.7 1.8 16 46-61 46-61 (71)
24 1i07_A Epidermal growth factor 25.2 32 0.0011 19.3 1.5 21 40-60 10-31 (60)
25 1k4u_S Phagocyte NADPH oxidase 24.3 47 0.0016 18.6 2.1 22 39-60 13-35 (62)
26 3i4o_A Translation initiation 24.0 1.4E+02 0.0048 18.8 4.9 51 3-67 15-71 (79)
27 1yn8_A NBP2, NAP1-binding prot 23.8 55 0.0019 18.0 2.3 20 41-60 11-31 (59)
28 2xzm_1 Ribosomal protein S28E 23.7 39 0.0013 21.3 1.7 15 47-61 47-61 (68)
29 1ne3_A 30S ribosomal protein S 23.6 58 0.002 20.5 2.5 17 44-60 42-58 (68)
30 1jo8_A ABP1P, actin binding pr 23.4 33 0.0011 19.1 1.3 19 42-60 11-30 (58)
31 4he6_A Peptidase family U32; u 23.1 66 0.0023 19.8 2.8 33 45-79 26-58 (89)
32 1uti_A GRB2-related adaptor pr 23.1 47 0.0016 18.3 1.9 21 40-60 10-31 (58)
33 2v31_A Ubiquitin-activating en 22.8 58 0.002 21.8 2.6 24 40-63 32-56 (112)
34 2a28_A BZZ1 protein; SH3 domai 22.7 34 0.0012 18.7 1.3 14 48-61 18-31 (54)
35 2jt4_A Cytoskeleton assembly c 22.7 53 0.0018 18.8 2.2 32 40-74 15-47 (71)
36 2oaw_A Spectrin alpha chain, b 22.6 55 0.0019 18.3 2.2 31 41-75 11-42 (65)
37 2bz8_A SH3-domain kinase bindi 22.6 35 0.0012 19.0 1.3 13 48-60 19-31 (58)
38 1zlm_A Osteoclast stimulating 22.5 53 0.0018 18.1 2.1 21 40-60 12-33 (58)
39 2jv2_A Putative uncharacterize 21.8 1.2E+02 0.0042 19.1 3.9 35 48-86 41-75 (83)
40 2iim_A Proto-oncogene tyrosine 21.3 38 0.0013 19.1 1.3 21 40-60 15-36 (62)
41 2fpe_A C-JUN-amino-terminal ki 21.3 35 0.0012 19.2 1.1 13 48-60 21-33 (62)
42 1p3h_A 10 kDa chaperonin; beta 21.3 55 0.0019 21.6 2.2 14 47-60 60-73 (99)
43 2jte_A CD2-associated protein; 21.1 57 0.0019 18.4 2.0 22 39-60 14-36 (64)
44 4e6r_A Cytoplasmic protein NCK 21.1 39 0.0013 18.5 1.3 19 42-60 12-31 (58)
45 3im6_A Cardiac Ca2+ release ch 21.1 49 0.0017 25.1 2.1 30 23-62 159-188 (217)
46 2nwm_A Vinexin; cell adhesion; 21.1 59 0.002 18.8 2.1 21 40-60 10-31 (65)
47 1x2p_A Protein arginine N-meth 21.0 39 0.0013 19.4 1.3 22 40-61 16-38 (68)
48 1zuu_A BZZ1 protein; SH3 domai 20.9 29 0.001 19.2 0.7 20 42-61 12-32 (58)
49 1oot_A Hypothetical 40.4 kDa p 20.9 41 0.0014 18.7 1.3 22 40-61 12-34 (60)
50 2djq_A SH3 domain containing r 20.8 68 0.0023 18.3 2.4 21 40-60 16-37 (68)
51 2pqh_A Spectrin alpha chain, b 20.8 64 0.0022 19.2 2.3 22 40-61 11-33 (80)
52 1d7q_A Translation initiation 20.8 2.2E+02 0.0076 19.9 8.1 52 3-68 32-88 (143)
53 1cka_A C-CRK N-terminal SH3 do 20.8 53 0.0018 18.0 1.8 21 40-60 10-31 (57)
54 1w1f_A Tyrosine-protein kinase 20.5 73 0.0025 17.8 2.4 22 40-61 16-38 (65)
55 1w70_A Neutrophil cytosol fact 20.2 38 0.0013 19.0 1.1 22 40-61 13-35 (60)
56 2ed0_A ABL interactor 2; coile 20.0 63 0.0022 19.1 2.2 27 34-60 20-47 (78)
57 2drm_A Acanthamoeba myosin IB; 20.0 70 0.0024 17.5 2.2 21 40-60 12-33 (58)
No 1
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=100.00 E-value=5.5e-40 Score=223.09 Aligned_cols=80 Identities=41% Similarity=0.630 Sum_probs=77.7
Q ss_pred ceEEEEEEeCCCCCeEEEEEeeEEeecceeeEEEeeeeEEEECCCCCCCCCCEEEEeecccCCcceeEEEEEEEeecccc
Q 034020 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARIY 81 (106)
Q Consensus 2 k~l~G~VvS~km~KTvvV~V~r~~~hpkY~K~~~r~kk~~vHDe~~~~k~GD~V~I~e~RPiSK~K~f~V~~Ii~k~~~~ 81 (106)
++|+|+|+|++|+|||+|+|+|+++||+|+|+++++++|+||||+|+|++||+|+|+|||||||+|+|+|++|++++..+
T Consensus 3 k~l~G~VvS~Km~KTivV~ve~~~~hp~Y~K~~kr~kk~~aHDe~n~~k~GD~V~I~E~RPlSKtK~~~vv~iv~~a~~~ 82 (89)
T 1qd7_I 3 KVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMETRPLSATKRFRLVEIVEKAVRA 82 (89)
T ss_pred EEEEEEEEecCCCceEEEEEEEEEEcCccceEEeccEEEEEeCCccCCCCCCEEEEEEcccCCCCEEEEEEEEEeeceee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999998754
No 2
>3r8n_Q 30S ribosomal protein S17; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_Q 3fih_Q* 3iy8_Q 3j18_Q* 2wwl_Q 3oar_Q 3oaq_Q 3ofb_Q 3ofa_Q 3ofp_Q 3ofx_Q 3ofy_Q 3ofo_Q 3r8o_Q 4a2i_Q 4gd1_Q 4gd2_Q 3i1m_Q 1vs7_Q* 3e1a_J ...
Probab=100.00 E-value=4.2e-38 Score=210.04 Aligned_cols=77 Identities=48% Similarity=0.915 Sum_probs=75.4
Q ss_pred ceEEEEEEeCCCCCeEEEEEeeEEeecceeeEEEeeeeEEEECCCCCCCCCCEEEEeecccCCcceeEEEEEEEeec
Q 034020 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 78 (106)
Q Consensus 2 k~l~G~VvS~km~KTvvV~V~r~~~hpkY~K~~~r~kk~~vHDe~~~~k~GD~V~I~e~RPiSK~K~f~V~~Ii~k~ 78 (106)
++|+|+|+|++|+|||+|+++++++||+|+||++++++|+||||+|+|++||+|+|+|||||||+|+|.|.+|++++
T Consensus 3 r~l~G~VvS~km~KTvvV~v~~~~~hp~Y~K~~kr~kk~~aHDe~n~~~~GD~V~I~e~RPlSKtk~~~v~~i~~~~ 79 (80)
T 3r8n_Q 3 RTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 79 (80)
T ss_dssp SCBCCEEEECCSTTCCEEECCEEEEETTTEEEEEECCEEECBCGGGCCCTTCEEEEEEEEEEETTEEEEEEEEECCC
T ss_pred eEEEEEEEecCCCCeEEEEEEEEEEcccccccEEecceEEEECCCCCCCCCCEEEEEEeccCCCcEeEEEEEEEEec
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999876
No 3
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=100.00 E-value=5.2e-37 Score=213.81 Aligned_cols=79 Identities=42% Similarity=0.746 Sum_probs=77.4
Q ss_pred ceEEEEEEeCCCCCeEEEEEeeEEeecceeeEEEeeeeEEEECCCCCCCCCCEEEEeecccCCcceeEEEEEEEeeccc
Q 034020 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 80 (106)
Q Consensus 2 k~l~G~VvS~km~KTvvV~V~r~~~hpkY~K~~~r~kk~~vHDe~~~~k~GD~V~I~e~RPiSK~K~f~V~~Ii~k~~~ 80 (106)
++|+|+|+|++|+|||+|.|+|+++||+|+||++++++|+||||+|+|++||+|+|+|||||||+|+|+|++|++++..
T Consensus 4 k~l~G~VvS~Km~KTivV~ver~~~hpkY~K~~kr~kk~~aHDe~n~~k~GD~V~I~E~RPlSKtKr~~vv~iv~~a~~ 82 (105)
T 2vqe_Q 4 KVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGRM 82 (105)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEEEEEECTTCCCCTTCEEEEEEEEEEETTEEEEEEEEEECCCH
T ss_pred eEEEEEEEecCCCcEEEEEEEEEEEcCccceEEecceEEEEECCCCCCCCCCEEEEEEcccCCCCEEEEEEEEeecccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999885
No 4
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8.2e-36 Score=210.07 Aligned_cols=78 Identities=38% Similarity=0.603 Sum_probs=75.8
Q ss_pred ceEEEEEEeCCCCCeEEEEEeeEEeecceeeEEEeeeeEEEECC-CCCCCCCCEEEEeecccCCcceeEEEEEEEeecc
Q 034020 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDE-NNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 79 (106)
Q Consensus 2 k~l~G~VvS~km~KTvvV~V~r~~~hpkY~K~~~r~kk~~vHDe-~~~~k~GD~V~I~e~RPiSK~K~f~V~~Ii~k~~ 79 (106)
++|+|+|+|++|+|||+|+|+|+++||+|+|+++++++|+|||| .|+|++||+|+|+|||||||+|+|+|++|++++.
T Consensus 32 r~l~G~VvS~KM~KTivV~ve~~~~hpkY~K~~kr~kk~~aHDe~~n~~~vGD~V~I~E~RPlSKtKr~~vv~i~~~a~ 110 (113)
T 3j20_R 32 RVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPCINAKVGDKVLIAETRPLSKTKHFVVVAVLERAE 110 (113)
T ss_dssp CEEEEEEEECCSTTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTSEEEEEECSCSSSSEEEEEEEECCCCC
T ss_pred EEEEEEEEeccCCceEEEEEEEEEEcCcccEEEECceEEEEECCCCCCCCCCCEEEEEecccCCCcEeEEEEEEEeccc
Confidence 68999999999999999999999999999999999999999999 6899999999999999999999999999999875
No 5
>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=3.6e-36 Score=218.81 Aligned_cols=79 Identities=42% Similarity=0.632 Sum_probs=76.9
Q ss_pred CceEEEEEEeCCCCCeEEEEEeeEEeecceeeEEEeeeeEEEECCCCCCCCCCEEEEeecccCCcceeEEEEEEEeecc
Q 034020 1 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 79 (106)
Q Consensus 1 ~k~l~G~VvS~km~KTvvV~V~r~~~hpkY~K~~~r~kk~~vHDe~~~~k~GD~V~I~e~RPiSK~K~f~V~~Ii~k~~ 79 (106)
.++|+|+|+|+||+|||+|+|+|+++||+|+|+++++++|+||||+|+|++||+|+|+|||||||+|+|+|++|++++.
T Consensus 60 ~k~l~G~VVS~KMdKTIvV~Ver~~~hpkY~K~vkr~kKy~AHDe~n~~kvGD~V~I~E~RPLSKtKrw~VveIveka~ 138 (142)
T 3bbn_Q 60 MKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPISKTKSFVALPVIARAA 138 (142)
T ss_dssp CCEEEEEEEECCSTTEEEEEEEEEEECSSSCSEEEEEEEEEEECTTCCCCTTEEEEEEECCCSSSSCCEEECCCSEEEC
T ss_pred eEEEEEEEEEccCCceEEEEEEEEEEcCccccEEecceEEEEECCCCCCCCCCEEEEEEccCCCCcEEEEEEEEEeccc
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999999876
No 6
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=100.00 E-value=2.6e-34 Score=211.90 Aligned_cols=78 Identities=29% Similarity=0.444 Sum_probs=74.4
Q ss_pred ceEEEEEEeCCCCCeEEEEEeeEEeecceeeEEEeeeeEEEECC-CCCCCCCCEEEEeecccCCcceeEEEEEEEeecc
Q 034020 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDE-NNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 79 (106)
Q Consensus 2 k~l~G~VvS~km~KTvvV~V~r~~~hpkY~K~~~r~kk~~vHDe-~~~~k~GD~V~I~e~RPiSK~K~f~V~~Ii~k~~ 79 (106)
++|+|+|+|++|+|||+|+++++++||+|+|+++++++|+|||| .|+|++||+|+|+|||||||+|+|+|++|++++.
T Consensus 68 r~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDee~n~~kvGD~V~I~EcRPLSKtKrw~Vv~I~~ka~ 146 (157)
T 2xzm_Q 68 KIIKGLVISTKMNRTVIIRRDYLHYVRKYNRYEKRHRNIPVHISPCFSVKEGDILVAGQCRPISKTVRFNALQVVPNEI 146 (157)
T ss_dssp CEEEEEEEECCSTTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTCEEEEEECCCCSSSCCEEEEEECCCCC
T ss_pred EEEEEEEEEecCCccEEEEEEEEEecCccceEeecceeEEEECCCCCCCCCCCEEEEEEcCCCCCcEEEEEEEEEeccc
Confidence 68999999999999999999999999999999999999999995 5799999999999999999999999999997753
No 7
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q
Probab=100.00 E-value=5.2e-34 Score=210.14 Aligned_cols=78 Identities=32% Similarity=0.465 Sum_probs=75.0
Q ss_pred ceEEEEEEeCCCCCeEEEEEeeEEeecceeeEEEeeeeEEEECCC-CCCCCCCEEEEeecccCCcceeEEEEEEEeecc
Q 034020 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN-NQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 79 (106)
Q Consensus 2 k~l~G~VvS~km~KTvvV~V~r~~~hpkY~K~~~r~kk~~vHDe~-~~~k~GD~V~I~e~RPiSK~K~f~V~~Ii~k~~ 79 (106)
++|+|+|+|++|+|||+|+++++++||+|+|+++++++|+||||+ |+|++||+|+|+|||||||+|+|+|++|+++++
T Consensus 69 r~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~kvGD~V~I~EcRPLSKtKrw~Vv~Iv~ka~ 147 (156)
T 3u5c_L 69 KILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKVSAAAG 147 (156)
T ss_dssp EEEEEEEEECCSTTEEEEEEEEEEEEGGGTEEEEEEEEEEEECCTTSCCCTTCEEEEEEEEEEETTEEEEEEEECCCCS
T ss_pred EEEEEEEEeecCCCeEEEEEEEEeecCccceEEECceEEEEECCCcCcCCCCCEEEEEecccCCCcEeEEEEEEEecCC
Confidence 589999999999999999999999999999999999999999985 599999999999999999999999999999864
No 8
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=100.00 E-value=6.2e-34 Score=210.11 Aligned_cols=77 Identities=34% Similarity=0.503 Sum_probs=71.3
Q ss_pred ceEEEEEEeCCCCCeEEEEEeeEEeecceeeEEEeeeeEEEECCC-C-CCCCCCEEEEeecccCCcceeEEEEEEEeec
Q 034020 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN-N-QCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 78 (106)
Q Consensus 2 k~l~G~VvS~km~KTvvV~V~r~~~hpkY~K~~~r~kk~~vHDe~-~-~~k~GD~V~I~e~RPiSK~K~f~V~~Ii~k~ 78 (106)
++|+|+|+|++|+|||+|+++++++||+|+|+++++++|+||||+ | +|++||+|+|+|||||||+|+|+|++|++..
T Consensus 71 r~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~~kvGD~V~I~E~RPLSKtKrw~Vv~I~~~~ 149 (158)
T 2zkq_q 71 RILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAA 149 (158)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECSSTTCCCEEEEEEEECCBCCSSCCCC-CCCEEEEECCSCSSSCC-CEEEEEEEC-
T ss_pred EEEEEEEEEccCCccEEEEEEEEEecCccceeeecceeEEEECCcccCcCCCCCEEEEEEccccCCcEEEEEEEEecCC
Confidence 689999999999999999999999999999999999999999987 4 7999999999999999999999999999754
No 9
>3iz6_P 40S ribosomal protein S11 (S17P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=8e-34 Score=209.99 Aligned_cols=78 Identities=31% Similarity=0.467 Sum_probs=51.9
Q ss_pred ceEEEEEEeCCCCCeEEEEEeeEEeecceeeEEEeeeeEEEECC-CCCCCCCCEEEEeecccCCcceeEEEEEEEeecc
Q 034020 2 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDE-NNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 79 (106)
Q Consensus 2 k~l~G~VvS~km~KTvvV~V~r~~~hpkY~K~~~r~kk~~vHDe-~~~~k~GD~V~I~e~RPiSK~K~f~V~~Ii~k~~ 79 (106)
++|+|+|+|++|+|||+|+++++++||+|+|+++++++|+|||| .|+|++||+|+|+|||||||+|+|+|++|++++.
T Consensus 70 ril~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~kvGD~V~I~EcRPLSKtKrw~Vv~Iv~~~~ 148 (161)
T 3iz6_P 70 RIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGS 148 (161)
T ss_dssp EECTTTCCEEEEEEEEEEECTTCCCCSSCEEEEEECCCSSSSCCEEEEECCCCCC------------------------
T ss_pred EEEEEEEEeccCCCeEEEEEEEEEecCccceEEECceeEEEECCCCCcCCCCCEEEEEeccCCCCcEeEEEEEEEecCc
Confidence 57899999999999999999999999999999999999999998 4799999999999999999999999999999864
No 10
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=36.71 E-value=19 Score=23.58 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=14.3
Q ss_pred ECCCCCCCCCCEEEEeecccC
Q 034020 43 HDENNQCNIGDRVRLDPSRPL 63 (106)
Q Consensus 43 HDe~~~~k~GD~V~I~e~RPi 63 (106)
.|++.++.+||+|++.-.--|
T Consensus 36 ~~~~~~~~vGD~VLVH~GfAi 56 (90)
T 2ot2_A 36 CDENGQPRVGQWVLVHVGFAM 56 (90)
T ss_dssp BCTTSCBCTTCEEEEETTEEE
T ss_pred cCCCCCCCCCCEEEEecChhh
Confidence 344446899999998765333
No 11
>3u5c_c S33, YS27, 40S ribosomal protein S28-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Y 3o30_R 3o2z_R 3u5g_c 3iz6_Y
Probab=33.72 E-value=29 Score=21.82 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=17.5
Q ss_pred eEEEECCCCCCCCCCEEEEeecc
Q 034020 39 KFMAHDENNQCNIGDRVRLDPSR 61 (106)
Q Consensus 39 k~~vHDe~~~~k~GD~V~I~e~R 61 (106)
++....-...+++||++.+.||.
T Consensus 38 r~i~RnVkGPVR~GDIl~L~EtE 60 (67)
T 3u5c_c 38 RTIVRNVKGPVRENDILVLMESE 60 (67)
T ss_dssp CEEEEECSSCCCTTCEEEESSSS
T ss_pred cEEEecccCCcccCCEEEEehhh
Confidence 44444555679999999999984
No 12
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=33.51 E-value=29 Score=25.76 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=17.2
Q ss_pred eeeeEEEECCC-CCCCCCCEEEEee
Q 034020 36 RTSKFMAHDEN-NQCNIGDRVRLDP 59 (106)
Q Consensus 36 r~kk~~vHDe~-~~~k~GD~V~I~e 59 (106)
|+-.+.++|+- +.|++||.|.|.=
T Consensus 211 rsi~v~l~~dLvd~~~PGDrV~vtG 235 (268)
T 2vl6_A 211 RQLEIILEDDLVDSARPGDRVKVTG 235 (268)
T ss_dssp CEEEEEEEGGGTTSSCTTCEEEEEE
T ss_pred cEEEEEEccCccCcccCCCEEEEEE
Confidence 55566666665 4899999998543
No 13
>1g31_A GP31; chaperone, CO-chaperonin, groes, in VIVO protein folding, bacteriophage T4; 2.30A {Enterobacteria phage T4} SCOP: b.35.1.1 PDB: 2cgt_O
Probab=32.77 E-value=66 Score=21.76 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=12.6
Q ss_pred CCCCCCCCCEEEEeec
Q 034020 45 ENNQCNIGDRVRLDPS 60 (106)
Q Consensus 45 e~~~~k~GD~V~I~e~ 60 (106)
+...+++||.|.+...
T Consensus 59 ~~~~vKvGD~Vl~~kg 74 (111)
T 1g31_A 59 PEGFCEVGDLTSLPVG 74 (111)
T ss_dssp CTTSCCTTCEEEEEGG
T ss_pred ccccccCCCEEEECCC
Confidence 4467999999999663
No 14
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=31.56 E-value=1.1e+02 Score=20.12 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=36.1
Q ss_pred eEEEEEEeCCCCCeEEEEEeeEEeecceeeEEEeeeeEEEECCCC-----CCCCCCEEEEeecccCC-cce
Q 034020 3 SVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENN-----QCNIGDRVRLDPSRPLS-KHK 67 (106)
Q Consensus 3 ~l~G~VvS~km~KTvvV~V~r~~~hpkY~K~~~r~kk~~vHDe~~-----~~k~GD~V~I~e~RPiS-K~K 67 (106)
+..|+|+....+....|..+ .-..+++|-|.- -.+.||.|++.. .|.. .+|
T Consensus 21 e~~g~V~~~lgn~~~~V~l~-------------nG~~~la~i~GKmRk~IwI~~GD~VlVe~-~~yd~~~K 77 (102)
T 1jt8_A 21 EILGIIEQMLGASRVRVRCL-------------DGKTRLGRIPGRLKNRIWVREGDVVIVKP-WEVQGDQK 77 (102)
T ss_dssp CEEEEEECSSCSSEEEEEEE-------------TTEEEEEECCHHHHHHHCCCSCEEEEECC-BCCTTSEE
T ss_pred EEEEEEEEEcCCCEEEEEEC-------------CCCEEEEEEcccceeeEEecCCCEEEEEe-ccCCCCce
Confidence 46788888888888777754 334577777742 488999998874 4665 555
No 15
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=31.08 E-value=34 Score=25.62 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=17.6
Q ss_pred eeeeEEEECCC-CCCCCCCEEEEeec
Q 034020 36 RTSKFMAHDEN-NQCNIGDRVRLDPS 60 (106)
Q Consensus 36 r~kk~~vHDe~-~~~k~GD~V~I~e~ 60 (106)
|+-.+.++|+- +.|++||.|.|.=.
T Consensus 198 rsi~V~l~~dLvd~~~PGDrV~vtGI 223 (279)
T 1ltl_A 198 RQITVVLEDDLVDTLTPGDIVRVTGT 223 (279)
T ss_dssp CEEEEEEEGGGTTCCCTTCEEEEEEE
T ss_pred eEEEEEEcccccCccCCCCEEEEEEE
Confidence 55556666655 48999999986543
No 16
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=30.39 E-value=69 Score=21.75 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=28.0
Q ss_pred CCCCCCEEEEeecccCCcceeEEEEEEEeeccc
Q 034020 48 QCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 80 (106)
Q Consensus 48 ~~k~GD~V~I~e~RPiSK~K~f~V~~Ii~k~~~ 80 (106)
.++.||.|...-..|-..-|.|.+.+|..=.+.
T Consensus 90 ~lr~GD~V~g~vr~~~~~ek~~~l~~v~~vng~ 122 (130)
T 1a62_A 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFD 122 (130)
T ss_dssp TCCTTCEEEEEEECCCTTCCSEEEEEEEEETTB
T ss_pred CCCCCCEEEEEEeCCCCCCcccceeEEEeECCC
Confidence 689999999888888888899999998765554
No 17
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=30.20 E-value=63 Score=20.08 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=38.1
Q ss_pred EEEEEEe-CCCCCeEEEEEeeEEeecceeeEEEeeeeEEEECCC--CCCCCCCEEEEeecccCCcceeEEEEEE
Q 034020 4 VVGLVVS-NKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN--NQCNIGDRVRLDPSRPLSKHKHWAVAEI 74 (106)
Q Consensus 4 l~G~VvS-~km~KTvvV~V~r~~~hpkY~K~~~r~kk~~vHDe~--~~~k~GD~V~I~e~RPiSK~K~f~V~~I 74 (106)
-.|+|.+ +..+.++++...-. |.++- =--+-.|.+-|+. ..+++||.|.+.=.+-= -.|.|.+|
T Consensus 10 ~~G~V~~id~~~~~iTi~H~pI---~~l~w-paMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~---~~~~it~i 76 (80)
T 2qcp_X 10 ATGVVKGIDLESKKITIHHDPI---AAVNW-PEMTMRFTITPQTKMSEIKTGDKVAFNFVQQG---NLSLLQDI 76 (80)
T ss_dssp EEEEEEEEETTTTEEEEEECCB---GGGTB-CSEEEEEECCTTCEECCCCTTCEEEEEEEEET---TEEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEEcCCc---ccCCC-CceEEEEEccChhhhhcCCCCCEEEEEEEEeC---CEEEEEEE
Confidence 5789988 66677888874321 22210 0123345555554 48999999988765321 13777665
No 18
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=28.46 E-value=34 Score=18.94 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=14.8
Q ss_pred EEEECCCC-CCCCCCEEEEeec
Q 034020 40 FMAHDENN-QCNIGDRVRLDPS 60 (106)
Q Consensus 40 ~~vHDe~~-~~k~GD~V~I~e~ 60 (106)
|.+.++.. ..+.||+|.|.+.
T Consensus 11 y~~~~~~eLs~~~Gd~i~v~~~ 32 (60)
T 2v1q_A 11 FMAESQDELTIKSGDKVYILDD 32 (60)
T ss_dssp BCCCSTTBCCBCTTCEEEEEES
T ss_pred ECCCCCCCccCCCCCEEEEEeC
Confidence 34444444 7899999999873
No 19
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=27.38 E-value=33 Score=22.13 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=25.6
Q ss_pred EEEeeeeEEEECCCCCCCCCCEEEEeecccCCcceeEEEEEEEee
Q 034020 33 YVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 77 (106)
Q Consensus 33 ~~~r~kk~~vHDe~~~~k~GD~V~I~e~RPiSK~K~f~V~~Ii~k 77 (106)
...-.|++.+.--+...++||++.+.|..+=.-+-+-...+|..-
T Consensus 22 V~~G~Kt~EiR~nDr~~~vGD~l~l~E~~~g~yTGr~i~~~Vt~i 66 (83)
T 3iuw_A 22 VKERRKTFEIRKNDRNFQVGDILILEEYMNGMYLDDECEAEVIYI 66 (83)
T ss_dssp HHTTSCCEEEEECCSCCCTTCEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred HHcCCcEEEEEecccCCCCCCEEEEEEccCCCccCcEEEEEEEEE
Confidence 334445555554444699999999999843111233444455444
No 20
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.95 E-value=1.4e+02 Score=19.86 Aligned_cols=51 Identities=18% Similarity=0.151 Sum_probs=36.8
Q ss_pred eEEEEEEeCCCCCeEEEEEeeEEeecceeeEEEeeeeEEEECCCC-----CCCCCCEEEEeecccCC-cce
Q 034020 3 SVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENN-----QCNIGDRVRLDPSRPLS-KHK 67 (106)
Q Consensus 3 ~l~G~VvS~km~KTvvV~V~r~~~hpkY~K~~~r~kk~~vHDe~~-----~~k~GD~V~I~e~RPiS-K~K 67 (106)
+..|+|+...-+....|..+ .-..++||-|.- -.+.||.|++.. .|.. +.|
T Consensus 16 e~~g~V~~~lgn~~f~V~l~-------------nG~~~la~i~GK~Rk~IwI~~GD~VlVe~-~~yd~~~k 72 (111)
T 2dgy_A 16 QQIVRVLRTPGNNLHEVETA-------------QGQRFLVSMPSKYRKNIWIKRGDFLIVDP-IEEGEKVK 72 (111)
T ss_dssp CEEEEEEECCSSSEEEEECT-------------TSCEEEEECCTTCCSCCCCCSSCEEEEEE-CSSCSSCC
T ss_pred eEEEEEEEeCCCCEEEEEeC-------------CCCEEEEEechhhcccEEEcCCCEEEEEe-cccCCcce
Confidence 56899998888888877754 235677887753 478999999885 4666 443
No 21
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=26.87 E-value=76 Score=20.08 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=37.8
Q ss_pred EEEEEEe-CCCCCeEEEEEeeEEeecceeeEEEeeeeEEEECCC--CCCCCCCEEEEeecccCCcceeEEEEEE
Q 034020 4 VVGLVVS-NKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN--NQCNIGDRVRLDPSRPLSKHKHWAVAEI 74 (106)
Q Consensus 4 l~G~VvS-~km~KTvvV~V~r~~~hpkY~K~~~r~kk~~vHDe~--~~~k~GD~V~I~e~RPiSK~K~f~V~~I 74 (106)
-.|+|.+ +..+++|++..+-. |.++- =--+-.|.+=|+. ..+++||.|.+.=.+-= -.|+|.+|
T Consensus 18 ~~G~V~~id~~~~~iTi~H~pI---~~l~w-paMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~---~~~~it~i 84 (88)
T 2vb2_X 18 ATGVVKGIDLESKKITIHHDPI---AAVNW-PEMTMRFTITPQTKMSEIKTGDKVAFNFVQQG---NLSLLQDI 84 (88)
T ss_dssp EEEEEEEEETTTTEEEEEECCB---GGGTB-CSEEEEEECCTTCEECCCCTTCEEEEEEEEET---TEEEEEEE
T ss_pred EEEEEEEEcCCCCEEEEecCCc---ccCCC-CceEEEEEcCChhhhhcCCCCCEEEEEEEEeC---CEEEEEEE
Confidence 5789988 66677888874321 11110 0123345555553 48999999988765321 13777665
No 22
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=26.12 E-value=24 Score=20.93 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=15.1
Q ss_pred EEEECCCC-CCCCCCEEEEeec
Q 034020 40 FMAHDENN-QCNIGDRVRLDPS 60 (106)
Q Consensus 40 ~~vHDe~~-~~k~GD~V~I~e~ 60 (106)
|.+.++.. ..+.||+|.|.+.
T Consensus 15 y~a~~~~ELs~~~Gd~i~v~~~ 36 (65)
T 2lj0_A 15 YIPQNDDELELRDGDIVDVMEK 36 (65)
T ss_dssp BCCSSTTBCCBCTTCEEEEEEE
T ss_pred ECCCCcCCcCCCCCCEEEEeEe
Confidence 34444544 8999999998764
No 23
>3j20_X 30S ribosomal protein S28E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.55 E-value=35 Score=21.71 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=13.6
Q ss_pred CCCCCCCCEEEEeecc
Q 034020 46 NNQCNIGDRVRLDPSR 61 (106)
Q Consensus 46 ~~~~k~GD~V~I~e~R 61 (106)
...+++||++.+.||.
T Consensus 46 KGPVR~GDIl~L~EtE 61 (71)
T 3j20_X 46 RGPVRIGDILILRETE 61 (71)
T ss_dssp ESCCCTTCEEEESCSS
T ss_pred cCCcccCcEEEeehhh
Confidence 3569999999999984
No 24
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=25.24 E-value=32 Score=19.25 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=14.9
Q ss_pred EEEECCCC-CCCCCCEEEEeec
Q 034020 40 FMAHDENN-QCNIGDRVRLDPS 60 (106)
Q Consensus 40 ~~vHDe~~-~~k~GD~V~I~e~ 60 (106)
|.+.++.. ..+.||+|.|.+.
T Consensus 10 y~~~~~~eLs~~~Gd~i~v~~~ 31 (60)
T 1i07_A 10 FVARNSSELSVMKDDVLEILDD 31 (60)
T ss_dssp BCCSSTTBCCBCTTCEEEECGG
T ss_pred CCCCCCCcccCCCCCEEEEEEc
Confidence 34444443 7899999999876
No 25
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=24.33 E-value=47 Score=18.64 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=15.7
Q ss_pred eEEEECCCC-CCCCCCEEEEeec
Q 034020 39 KFMAHDENN-QCNIGDRVRLDPS 60 (106)
Q Consensus 39 k~~vHDe~~-~~k~GD~V~I~e~ 60 (106)
.|.+.++.. ..+.||+|.|.+.
T Consensus 13 dy~~~~~~eLs~~~Gd~i~v~~~ 35 (62)
T 1k4u_S 13 SYEATQPEDLEFQEGDIILVLSK 35 (62)
T ss_dssp CBCCCSSSBCCBCSSCEEEEEEE
T ss_pred CCCcCCCCCccCCCCCEEEEEEe
Confidence 344445544 7899999999876
No 26
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=23.96 E-value=1.4e+02 Score=18.76 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=29.9
Q ss_pred eEEEEEEeCCCCCeEEEEEeeEEeecceeeEEEeeeeEEEECCC------CCCCCCCEEEEeecccCCcce
Q 034020 3 SVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDEN------NQCNIGDRVRLDPSRPLSKHK 67 (106)
Q Consensus 3 ~l~G~VvS~km~KTvvV~V~r~~~hpkY~K~~~r~kk~~vHDe~------~~~k~GD~V~I~e~RPiSK~K 67 (106)
++.|+|+..-.+....|..+- -..+++|-+. --..+||.|.+.. .|..-+|
T Consensus 15 e~~G~Vik~l~n~~f~V~l~n-------------G~~~~c~i~GK~Rk~~I~Il~GD~V~ve~-~~yd~~k 71 (79)
T 3i4o_A 15 EVEGRVVEPLPNAMFRIELEN-------------GHKVLAHISGKMRQHYIRILPEDRVVVEL-SPYDLSR 71 (79)
T ss_dssp EEEEEEEEEETTTEEEEEETT-------------SCEEEEEECHHHHHTTCCCCTTCEEEEEE-ETTEEEE
T ss_pred EEEEEEEEEcCCCEEEEEeCC-------------CCEEEEEeCcceecCCccCCCCCEEEEEE-CccCCCc
Confidence 467887776656666666542 1134455441 1478999998854 4444343
No 27
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=23.79 E-value=55 Score=17.97 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=14.0
Q ss_pred EEECCCC-CCCCCCEEEEeec
Q 034020 41 MAHDENN-QCNIGDRVRLDPS 60 (106)
Q Consensus 41 ~vHDe~~-~~k~GD~V~I~e~ 60 (106)
.+.++.. ..+.||+|.|.+.
T Consensus 11 ~~~~~~eLs~~~Gd~i~v~~~ 31 (59)
T 1yn8_A 11 EPENDNELRLAEGDIVFISYK 31 (59)
T ss_dssp CCCSTTBCCBCTTCEEEEEEE
T ss_pred CCCCCCCcCCCCCCEEEEEEc
Confidence 3334433 7899999999775
No 28
>2xzm_1 Ribosomal protein S28E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_1
Probab=23.70 E-value=39 Score=21.26 Aligned_cols=15 Identities=27% Similarity=0.614 Sum_probs=13.0
Q ss_pred CCCCCCCEEEEeecc
Q 034020 47 NQCNIGDRVRLDPSR 61 (106)
Q Consensus 47 ~~~k~GD~V~I~e~R 61 (106)
..+++||++.+.||.
T Consensus 47 GPVr~GDil~L~Ete 61 (68)
T 2xzm_1 47 GACRVGDVLELMECE 61 (68)
T ss_dssp SCCCTTCEEEESCSS
T ss_pred CCcccCcEEeehhhh
Confidence 469999999999983
No 29
>1ne3_A 30S ribosomal protein S28E; beta protein, structural genomics, OCSP, NESG, protein structure initiative, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: b.40.4.5
Probab=23.65 E-value=58 Score=20.45 Aligned_cols=17 Identities=18% Similarity=0.093 Sum_probs=14.0
Q ss_pred CCCCCCCCCCEEEEeec
Q 034020 44 DENNQCNIGDRVRLDPS 60 (106)
Q Consensus 44 De~~~~k~GD~V~I~e~ 60 (106)
.-...+++||++.+.||
T Consensus 42 nVkGPVR~GDil~L~Et 58 (68)
T 1ne3_A 42 NVMGPIREGDILMLLDT 58 (68)
T ss_dssp EECSCCCTTCEEEECCC
T ss_pred eccCCcccCcEEEehhh
Confidence 33457999999999998
No 30
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=23.44 E-value=33 Score=19.10 Aligned_cols=19 Identities=16% Similarity=0.080 Sum_probs=13.7
Q ss_pred EECCCC-CCCCCCEEEEeec
Q 034020 42 AHDENN-QCNIGDRVRLDPS 60 (106)
Q Consensus 42 vHDe~~-~~k~GD~V~I~e~ 60 (106)
+.++.. ..+.||+|.|.+.
T Consensus 11 ~~~~~eLs~~~Gd~i~v~~~ 30 (58)
T 1jo8_A 11 AAEDNELTFVENDKIINIEF 30 (58)
T ss_dssp CCSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCCcccCCCCEEEEEEe
Confidence 334433 7899999999875
No 31
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=23.15 E-value=66 Score=19.84 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCCCCCCCCEEEEeecccCCcceeEEEEEEEeecc
Q 034020 45 ENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 79 (106)
Q Consensus 45 e~~~~k~GD~V~I~e~RPiSK~K~f~V~~Ii~k~~ 79 (106)
-.|...+||.++|. .|=.....|.|.++....+
T Consensus 26 ~rN~f~~GD~iEi~--~P~g~~~~~~v~~m~d~~G 58 (89)
T 4he6_A 26 QRNHFRPGDEVEFF--GPEIENFTQVIEKIWDEDG 58 (89)
T ss_dssp ESSCBCTTCEEEEE--STTSCCEEEECCCEEETTS
T ss_pred EcCCcCCCCEEEEE--cCCCCcEEEEeHHeEcCCC
Confidence 35678899999876 4655566788877765444
No 32
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=23.14 E-value=47 Score=18.31 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=14.9
Q ss_pred EEEECCCC-CCCCCCEEEEeec
Q 034020 40 FMAHDENN-QCNIGDRVRLDPS 60 (106)
Q Consensus 40 ~~vHDe~~-~~k~GD~V~I~e~ 60 (106)
|.+.++.. ..+.||++.|.+.
T Consensus 10 y~~~~~~eLs~~~Gd~i~v~~~ 31 (58)
T 1uti_A 10 FEALEEDELGFRSGEVVEVLDS 31 (58)
T ss_dssp BCCCSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCcCCCCCCCCCEEEEEEE
Confidence 33444443 7899999999875
No 33
>2v31_A Ubiquitin-activating enzyme E1 X; ligase, phosphorylation, catalytic domain, heteronuclear first catalytic cysteine half-domain, E1 protein; NMR {Mus musculus}
Probab=22.78 E-value=58 Score=21.80 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=18.0
Q ss_pred EEEECCCC-CCCCCCEEEEeecccC
Q 034020 40 FMAHDENN-QCNIGDRVRLDPSRPL 63 (106)
Q Consensus 40 ~~vHDe~~-~~k~GD~V~I~e~RPi 63 (106)
+..+|+.. .+..||.|.+.|.+=+
T Consensus 32 Vt~~~~~~H~l~dGD~V~FseV~GM 56 (112)
T 2v31_A 32 VTCLDEARHGFETGDFVSFSEVQGM 56 (112)
T ss_dssp EEECTTCCCCCCTTCEEEECSEESC
T ss_pred EEEecCCccCCcCCCEEEEEeeEcc
Confidence 44566654 8999999999987533
No 34
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=22.73 E-value=34 Score=18.69 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=11.7
Q ss_pred CCCCCCEEEEeecc
Q 034020 48 QCNIGDRVRLDPSR 61 (106)
Q Consensus 48 ~~k~GD~V~I~e~R 61 (106)
..+.||+|.|.+..
T Consensus 18 s~~~Gd~i~v~~~~ 31 (54)
T 2a28_A 18 SIDPGDIITVIRGD 31 (54)
T ss_dssp CBCTTCEEEEEECC
T ss_pred cCCCCCEEEEEEec
Confidence 78999999988754
No 35
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=22.68 E-value=53 Score=18.82 Aligned_cols=32 Identities=25% Similarity=0.565 Sum_probs=19.4
Q ss_pred EEEECCCC-CCCCCCEEEEeecccCCcceeEEEEEE
Q 034020 40 FMAHDENN-QCNIGDRVRLDPSRPLSKHKHWAVAEI 74 (106)
Q Consensus 40 ~~vHDe~~-~~k~GD~V~I~e~RPiSK~K~f~V~~I 74 (106)
|.+.++.. ..+.||+|.|.+... .--|-..+.
T Consensus 15 y~~~~~~eLs~~~Gd~i~v~~~~~---~~~Ww~g~~ 47 (71)
T 2jt4_A 15 FMAESQDELTIKSGDKVYILDDKK---SKDWWMCQL 47 (71)
T ss_dssp BCCSSTTBCCBCTTCEEEEEESSS---CSSEEEEEE
T ss_pred CCCCCCCcccCCCCCEEEEEECCC---CCCCEEEEE
Confidence 44444443 789999999987421 234555444
No 36
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=22.63 E-value=55 Score=18.31 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=18.9
Q ss_pred EEECCCC-CCCCCCEEEEeecccCCcceeEEEEEEE
Q 034020 41 MAHDENN-QCNIGDRVRLDPSRPLSKHKHWAVAEIL 75 (106)
Q Consensus 41 ~vHDe~~-~~k~GD~V~I~e~RPiSK~K~f~V~~Ii 75 (106)
.+.++.. ..+.||+|.|.+.. .--|-..+..
T Consensus 11 ~~~~~~eLs~~~Gd~i~v~~~~----~~~Ww~g~~~ 42 (65)
T 2oaw_A 11 QEKSPREVTMKKGDILTLLNST----NKDWWKVEVK 42 (65)
T ss_dssp CCSSTTBCCBCTTCEEEEEECC----SSSEEEEEEE
T ss_pred CccCCCCCCCCCCCEEEEEEcC----CCCEEEEEEc
Confidence 3334433 78999999998853 1345554444
No 37
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=22.60 E-value=35 Score=18.98 Aligned_cols=13 Identities=8% Similarity=0.133 Sum_probs=11.5
Q ss_pred CCCCCCEEEEeec
Q 034020 48 QCNIGDRVRLDPS 60 (106)
Q Consensus 48 ~~k~GD~V~I~e~ 60 (106)
..+.||+|.+.+.
T Consensus 19 s~~~Gd~i~v~~~ 31 (58)
T 2bz8_A 19 TISVGEIITNIRK 31 (58)
T ss_dssp CBCTTCEEEEEEC
T ss_pred eECCCCEEEEEEe
Confidence 7899999999875
No 38
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=22.52 E-value=53 Score=18.14 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=14.9
Q ss_pred EEEECCCC-CCCCCCEEEEeec
Q 034020 40 FMAHDENN-QCNIGDRVRLDPS 60 (106)
Q Consensus 40 ~~vHDe~~-~~k~GD~V~I~e~ 60 (106)
|.+.++.. ..+.||++.|.+.
T Consensus 12 y~~~~~~eLs~~~Gd~i~v~~~ 33 (58)
T 1zlm_A 12 FEPRTPDELYFEEGDIIYITDM 33 (58)
T ss_dssp BCCSSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCCCCccCCCCCEEEEEEe
Confidence 34444443 7899999999875
No 39
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=21.75 E-value=1.2e+02 Score=19.07 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=24.9
Q ss_pred CCCCCCEEEEeecccCCcceeEEEEEEEeeccccCCCCc
Q 034020 48 QCNIGDRVRLDPSRPLSKHKHWAVAEILKKARIYVPPSA 86 (106)
Q Consensus 48 ~~k~GD~V~I~e~RPiSK~K~f~V~~Ii~k~~~~~~p~t 86 (106)
.+..||.|.|.- +.....|.|.+.-.+ -..+.+.|
T Consensus 41 PV~~GD~I~i~~---~G~~i~F~Vv~t~P~-~V~Vt~~T 75 (83)
T 2jv2_A 41 TVRTGDVIGISI---LGKEVKFKVVQAYPS-PLRVEDRT 75 (83)
T ss_dssp EECTTCEEEEEE---TTEEEEEEEEEEESS-SEECCTTS
T ss_pred CccCCCEEEEee---CCCEEEEEEEEecCc-cEEECCCc
Confidence 578899998754 446778999888666 55555554
No 40
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=21.33 E-value=38 Score=19.08 Aligned_cols=21 Identities=10% Similarity=0.346 Sum_probs=15.1
Q ss_pred EEEECCCC-CCCCCCEEEEeec
Q 034020 40 FMAHDENN-QCNIGDRVRLDPS 60 (106)
Q Consensus 40 ~~vHDe~~-~~k~GD~V~I~e~ 60 (106)
|.+.++.. ..+.||+|.|.+.
T Consensus 15 y~~~~~~eLs~~~Gd~i~v~~~ 36 (62)
T 2iim_A 15 YEPSHDGDLGFEKGEQLRILEQ 36 (62)
T ss_dssp BCCCSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCCCCcCCCCCCEEEEEEc
Confidence 34444443 7899999999886
No 41
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=21.33 E-value=35 Score=19.22 Aligned_cols=13 Identities=8% Similarity=0.261 Sum_probs=10.8
Q ss_pred CCCCCCEEEEeec
Q 034020 48 QCNIGDRVRLDPS 60 (106)
Q Consensus 48 ~~k~GD~V~I~e~ 60 (106)
..+.||+|.|.+.
T Consensus 21 s~~~Gd~i~v~~~ 33 (62)
T 2fpe_A 21 ELEVDDPLLVELQ 33 (62)
T ss_dssp CBCTTCEEEEEEE
T ss_pred cCCCCCEEEEEEe
Confidence 7899999999653
No 42
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=21.27 E-value=55 Score=21.60 Aligned_cols=14 Identities=21% Similarity=0.121 Sum_probs=11.8
Q ss_pred CCCCCCCEEEEeec
Q 034020 47 NQCNIGDRVRLDPS 60 (106)
Q Consensus 47 ~~~k~GD~V~I~e~ 60 (106)
.++++||.|++.+.
T Consensus 60 ~~VkvGD~Vlf~ky 73 (99)
T 1p3h_A 60 LDVAEGDTVIYSKY 73 (99)
T ss_dssp CSCCTTCEEEEECT
T ss_pred cccCCCCEEEECCc
Confidence 36999999999874
No 43
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=21.15 E-value=57 Score=18.35 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=15.3
Q ss_pred eEEEECCCC-CCCCCCEEEEeec
Q 034020 39 KFMAHDENN-QCNIGDRVRLDPS 60 (106)
Q Consensus 39 k~~vHDe~~-~~k~GD~V~I~e~ 60 (106)
.|.+.++.. ..+.||+|.|.+.
T Consensus 14 dy~~~~~~eLs~~~Gd~i~v~~~ 36 (64)
T 2jte_A 14 PYTGTNEDELTFREGEIIHLISK 36 (64)
T ss_dssp CBCCSSSSBCCBCTTCEEEEEES
T ss_pred cCCccCCCccCCCCCCEEEEEEC
Confidence 344444444 7899999999875
No 44
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=21.08 E-value=39 Score=18.51 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=13.7
Q ss_pred EECCCC-CCCCCCEEEEeec
Q 034020 42 AHDENN-QCNIGDRVRLDPS 60 (106)
Q Consensus 42 vHDe~~-~~k~GD~V~I~e~ 60 (106)
+.++.. ..+.||++.|.+.
T Consensus 12 ~~~~~eLs~~~Gd~i~v~~~ 31 (58)
T 4e6r_A 12 AEREDELSLVXGSRVTVMEX 31 (58)
T ss_dssp CCSTTBCCBCTTCEEEEEEE
T ss_pred CCCCCEeeEeCCCEEEEeEc
Confidence 334443 8999999998764
No 45
>3im6_A Cardiac Ca2+ release channel; ryanodine receptor 2, calcium release channel, ION channel, arrhythmia, CPVT, ARVD2, ARVC2, disease mutation; 1.70A {Mus musculus} PDB: 3im5_A 3im7_A 3qr5_A 3ila_A 3hsm_A
Probab=21.08 E-value=49 Score=25.08 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=20.8
Q ss_pred eEEeecceeeEEEeeeeEEEECCCCCCCCCCEEEEeeccc
Q 034020 23 RLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRP 62 (106)
Q Consensus 23 r~~~hpkY~K~~~r~kk~~vHDe~~~~k~GD~V~I~e~RP 62 (106)
.+..||.| ....+.+.+++||.|.|.+-..
T Consensus 159 wF~I~P~y----------K~RseGd~V~~GD~ViL~sv~s 188 (217)
T 3im6_A 159 WWTIHPAS----------KQRSEGEKVRVGDDLILVSMSS 188 (217)
T ss_dssp EEEEEESS----------SCCCTTCBCBTTCEEEEEETTT
T ss_pred EEEEEccE----------eeccCCCceeeCCEEEEEECCC
Confidence 45566666 2345667889999999986543
No 46
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=21.05 E-value=59 Score=18.77 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=14.7
Q ss_pred EEEECCCC-CCCCCCEEEEeec
Q 034020 40 FMAHDENN-QCNIGDRVRLDPS 60 (106)
Q Consensus 40 ~~vHDe~~-~~k~GD~V~I~e~ 60 (106)
|.+.++.. ..+.||+|.|.+.
T Consensus 10 y~~~~~~eLs~~~Gd~i~v~~~ 31 (65)
T 2nwm_A 10 FQAQSPKELTLQKGDIVYIHKE 31 (65)
T ss_dssp BCCCSTTBCCBCTTCEEEEEEC
T ss_pred ECCCCcCccCCcCCCEEEEEEe
Confidence 33444443 7899999999775
No 47
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.03 E-value=39 Score=19.41 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=15.4
Q ss_pred EEEECCCC-CCCCCCEEEEeecc
Q 034020 40 FMAHDENN-QCNIGDRVRLDPSR 61 (106)
Q Consensus 40 ~~vHDe~~-~~k~GD~V~I~e~R 61 (106)
|.+.++.. ..+.||+|.|.+..
T Consensus 16 y~~~~~~eLs~~~Gd~i~v~~~~ 38 (68)
T 1x2p_A 16 YAATDETQLSFLRGEKILILRQT 38 (68)
T ss_dssp CCCSSTTBCCCCTTCEEEEEECC
T ss_pred ECCCCcCCcCCCCCCEEEEEEcC
Confidence 33444444 78999999998864
No 48
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=20.89 E-value=29 Score=19.18 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=14.2
Q ss_pred EECCCC-CCCCCCEEEEeecc
Q 034020 42 AHDENN-QCNIGDRVRLDPSR 61 (106)
Q Consensus 42 vHDe~~-~~k~GD~V~I~e~R 61 (106)
+.++.. ..+.||+|.|.+..
T Consensus 12 ~~~~~eLs~~~Gd~i~v~~~~ 32 (58)
T 1zuu_A 12 QKDDDEITITPGDKISLVARD 32 (58)
T ss_dssp CCSTTBCCBCTTCCEEEEECC
T ss_pred CcCCCcccCCCCCEEEEeEcC
Confidence 334433 78999999998754
No 49
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=20.85 E-value=41 Score=18.71 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=15.3
Q ss_pred EEEECCCC-CCCCCCEEEEeecc
Q 034020 40 FMAHDENN-QCNIGDRVRLDPSR 61 (106)
Q Consensus 40 ~~vHDe~~-~~k~GD~V~I~e~R 61 (106)
|.+.++.. ..+.||+|.|.+..
T Consensus 12 y~~~~~~eLs~~~Gd~i~v~~~~ 34 (60)
T 1oot_A 12 FAGEESGDLPFRKGDVITILKKS 34 (60)
T ss_dssp BCCCSTTBCCBCTTCEEEEEECC
T ss_pred CCcCCcCEeeEcCCCEEEEEEeC
Confidence 33434443 78999999998864
No 50
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=20.83 E-value=68 Score=18.28 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=15.0
Q ss_pred EEEECCCC-CCCCCCEEEEeec
Q 034020 40 FMAHDENN-QCNIGDRVRLDPS 60 (106)
Q Consensus 40 ~~vHDe~~-~~k~GD~V~I~e~ 60 (106)
|.+.++.. ..+.||+|.|.+.
T Consensus 16 y~~~~~~eLs~~~Gd~i~v~~~ 37 (68)
T 2djq_A 16 YRGKNPGDLKFNKGDVILLRRQ 37 (68)
T ss_dssp CCSCCTTCCCCCTTCEEEEEEC
T ss_pred CCCCCcCCccCCCCCEEEEEEe
Confidence 34444444 7899999999775
No 51
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural protein; 1.75A {Gallus gallus}
Probab=20.81 E-value=64 Score=19.19 Aligned_cols=22 Identities=18% Similarity=0.233 Sum_probs=15.5
Q ss_pred EEEECCCC-CCCCCCEEEEeecc
Q 034020 40 FMAHDENN-QCNIGDRVRLDPSR 61 (106)
Q Consensus 40 ~~vHDe~~-~~k~GD~V~I~e~R 61 (106)
|.+.++.. ..+.||+|.|.+..
T Consensus 11 y~~~~~~eLs~~~Gd~i~v~~~~ 33 (80)
T 2pqh_A 11 YQEKSPREVTMKKGDILTLLNST 33 (80)
T ss_dssp BCCCSTTBCCBCTTCEEEEEECC
T ss_pred CCCCCCCccCCCCCCEEEEEEec
Confidence 44444444 78999999998863
No 52
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=20.78 E-value=2.2e+02 Score=19.88 Aligned_cols=52 Identities=13% Similarity=0.033 Sum_probs=36.0
Q ss_pred eEEEEEEeCCCCCeEEEEEeeEEeecceeeEEEeeeeEEEECCCC-----CCCCCCEEEEeecccCCccee
Q 034020 3 SVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENN-----QCNIGDRVRLDPSRPLSKHKH 68 (106)
Q Consensus 3 ~l~G~VvS~km~KTvvV~V~r~~~hpkY~K~~~r~kk~~vHDe~~-----~~k~GD~V~I~e~RPiSK~K~ 68 (106)
+..|+|+....+....|..+ --..+++|-|.- -.+.||.|++.. +|...+|-
T Consensus 32 e~~g~V~e~lgn~~f~V~l~-------------nG~~~La~I~GKmRk~IwI~~GD~VlVe~-~~yd~~KG 88 (143)
T 1d7q_A 32 QEYAQVIKMLGNGRLEAMCF-------------DGVKRLCHIRGKLRKKVWINTSDIILVGL-RDYQDNKA 88 (143)
T ss_dssp EEEEEEEEECSSSEEEEEET-------------TTEEEEEECCSGGGGSCCCCTTCEEEEEC-SSSSSSCC
T ss_pred EEEEEEEEEcCCCEEEEEeC-------------CCCEEEEEecccceeeEEecCCCEEEEee-ccCCCCeE
Confidence 46777777777777666653 334566777642 578999999886 58777774
No 53
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=20.76 E-value=53 Score=18.04 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=14.6
Q ss_pred EEEECCCC-CCCCCCEEEEeec
Q 034020 40 FMAHDENN-QCNIGDRVRLDPS 60 (106)
Q Consensus 40 ~~vHDe~~-~~k~GD~V~I~e~ 60 (106)
|.+.++.. ..+.||+|.|.+.
T Consensus 10 y~~~~~~eLs~~~Gd~i~v~~~ 31 (57)
T 1cka_A 10 FNGNDEEDLPFKKGDILRIRDK 31 (57)
T ss_dssp BCCSSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCCCCCCCCCCCEEEEEEe
Confidence 33434433 7899999999875
No 54
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=20.46 E-value=73 Score=17.84 Aligned_cols=22 Identities=5% Similarity=0.262 Sum_probs=15.5
Q ss_pred EEEECCCC-CCCCCCEEEEeecc
Q 034020 40 FMAHDENN-QCNIGDRVRLDPSR 61 (106)
Q Consensus 40 ~~vHDe~~-~~k~GD~V~I~e~R 61 (106)
|.+.++.. ..+.||+|.|.+..
T Consensus 16 y~~~~~~eLs~~~Gd~i~v~~~~ 38 (65)
T 1w1f_A 16 YDGIHPDDLSFKKGEKMKVLEEH 38 (65)
T ss_dssp BCCCSSSCCCBCTTCEEEEEEEC
T ss_pred ECCcCCCcCCCCCCCEEEEEEcC
Confidence 44444444 78999999998765
No 55
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=20.22 E-value=38 Score=18.97 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=15.1
Q ss_pred EEEECCCC-CCCCCCEEEEeecc
Q 034020 40 FMAHDENN-QCNIGDRVRLDPSR 61 (106)
Q Consensus 40 ~~vHDe~~-~~k~GD~V~I~e~R 61 (106)
|.+.+++. ..+.||++.+.+..
T Consensus 13 y~~~~~~eLs~~~Gd~i~v~~~~ 35 (60)
T 1w70_A 13 FTGNSKLELNFKAGDVIFLLSRI 35 (60)
T ss_dssp BCCSSTTBCCBCTTCEEEEEEEC
T ss_pred CCcCCCCCccCCCCCEEEEEEeC
Confidence 33444443 78999999998753
No 56
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.05 E-value=63 Score=19.12 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=17.7
Q ss_pred EEeeeeEEEECCCC-CCCCCCEEEEeec
Q 034020 34 VKRTSKFMAHDENN-QCNIGDRVRLDPS 60 (106)
Q Consensus 34 ~~r~kk~~vHDe~~-~~k~GD~V~I~e~ 60 (106)
.+---.|.+.++.. ..+.||+|.|.+.
T Consensus 20 ~~al~dy~~~~~~eLsf~~Gd~i~v~~~ 47 (78)
T 2ed0_A 20 VVAIYDYTKDKEDELSFQEGAIIYVIKK 47 (78)
T ss_dssp EEECSCBCCSSTTBCCBCSSCEEEEEEE
T ss_pred EEECccCCccCcCcccccCCCEEEEEEe
Confidence 33334455555544 7899999999875
No 57
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=20.05 E-value=70 Score=17.50 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=14.8
Q ss_pred EEEECCCC-CCCCCCEEEEeec
Q 034020 40 FMAHDENN-QCNIGDRVRLDPS 60 (106)
Q Consensus 40 ~~vHDe~~-~~k~GD~V~I~e~ 60 (106)
|.+.++.. ..+.||+|.|.+.
T Consensus 12 y~~~~~~eLs~~~Gd~i~v~~~ 33 (58)
T 2drm_A 12 YDAQTGDELTFKEGDTIIVHQK 33 (58)
T ss_dssp BCCCSTTBCCBCTTCEEEEEEC
T ss_pred CCCCCcCCcCCCCCCEEEEEEe
Confidence 33444443 7899999999876
Done!