RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 034020
         (106 letters)



>d2uubq1 b.40.4.5 (Q:2-101) Ribosomal protein S17 {Thermus
          thermophilus [TaxId: 274]}
          Length = 100

 Score =  109 bits (274), Expect = 2e-33
 Identities = 33/85 (38%), Positives = 54/85 (63%)

Query: 2  KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSR 61
          K + G+VVS+KMQK+V V V+R F H +Y + +KR+ K++AHD   +  +GD V +  SR
Sbjct: 3  KVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESR 62

Query: 62 PLSKHKHWAVAEILKKARIYVPPSA 86
          P+SK K + V  +++  R+ +    
Sbjct: 63 PISKRKRFRVLRLVESGRMDLVEKY 87


>d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli
          [TaxId: 562]}
          Length = 78

 Score =  102 bits (255), Expect = 1e-30
 Identities = 37/77 (48%), Positives = 56/77 (72%)

Query: 2  KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSR 61
          +++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   R
Sbjct: 1  RTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECR 60

Query: 62 PLSKHKHWAVAEILKKA 78
          PLSK K W +  +++KA
Sbjct: 61 PLSKTKSWTLVRVVEKA 77


>d1ripa_ b.40.4.5 (A:) Ribosomal protein S17 {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 81

 Score = 99.8 bits (249), Expect = 8e-30
 Identities = 33/77 (42%), Positives = 51/77 (66%)

Query: 2  KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSR 61
          K  VG VVS+KM K++ V V+    H +Y + VK + K+ AHDE+N+  +GD V++  +R
Sbjct: 3  KVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMETR 62

Query: 62 PLSKHKHWAVAEILKKA 78
          PLS  K + + EI++KA
Sbjct: 63 PLSATKRFRLVEIVEKA 79


>g1w2w.1 c.124.1.5 (A:,B:) Putative methylthioribose-1-phosphate
           isomerase Ypr118W {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 402

 Score = 25.6 bits (55), Expect = 1.3
 Identities = 7/37 (18%), Positives = 14/37 (37%)

Query: 57  LDPSRPLSKHKHWAVAEILKKARIYVPPSADNAAAAA 93
           L  SRP + +   ++ EI    +      A + +   
Sbjct: 102 LLSSRPTAVNLSNSLVEIKNILKSSSDLKAFDGSLYN 138


>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59
          (1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 102

 Score = 23.2 bits (50), Expect = 5.1
 Identities = 4/22 (18%), Positives = 10/22 (45%)

Query: 41 MAHDENNQCNIGDRVRLDPSRP 62
          +   E  +  +GD+V +   + 
Sbjct: 18 LQQREGAKAEVGDQVLVAGQKQ 39


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.126    0.355 

Gapped
Lambda     K      H
   0.267   0.0474    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 364,540
Number of extensions: 14603
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 7
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.5 bits)