Query 034021
Match_columns 106
No_of_seqs 110 out of 1624
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 14:59:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 9E-26 3.1E-30 125.8 11.9 81 25-105 18-98 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 5.2E-24 1.8E-28 120.6 12.5 82 24-105 4-85 (110)
3 3bs9_A Nucleolysin TIA-1 isofo 99.9 2.4E-23 8.2E-28 113.0 11.6 82 24-105 4-85 (87)
4 3mdf_A Peptidyl-prolyl CIS-tra 99.9 1.6E-23 5.3E-28 113.3 10.7 82 23-104 4-85 (85)
5 3md1_A Nuclear and cytoplasmic 99.9 3.9E-23 1.3E-27 111.3 12.1 79 27-105 2-80 (83)
6 2cqc_A Arginine/serine-rich sp 99.9 5.5E-23 1.9E-27 113.3 12.3 86 20-105 9-94 (95)
7 2do4_A Squamous cell carcinoma 99.9 1.1E-22 3.8E-27 113.1 13.2 84 21-105 12-95 (100)
8 2khc_A Testis-specific RNP-typ 99.9 3E-23 1E-27 118.6 10.9 84 21-104 35-118 (118)
9 2e5h_A Zinc finger CCHC-type a 99.9 5.9E-23 2E-27 113.0 11.8 84 21-104 11-94 (94)
10 2lxi_A RNA-binding protein 10; 99.9 2.8E-24 9.6E-29 118.0 6.4 79 27-105 2-82 (91)
11 2cq0_A Eukaryotic translation 99.9 5.7E-23 2E-27 114.9 11.8 85 21-105 10-94 (103)
12 1p27_B RNA-binding protein 8A; 99.9 4.1E-23 1.4E-27 116.0 11.2 85 21-105 18-102 (106)
13 2dgo_A Cytotoxic granule-assoc 99.9 9.3E-23 3.2E-27 116.0 12.8 86 20-105 9-94 (115)
14 2la6_A RNA-binding protein FUS 99.9 7E-23 2.4E-27 113.8 11.7 85 20-104 7-99 (99)
15 2cpz_A CUG triplet repeat RNA- 99.9 8E-23 2.7E-27 116.3 12.2 85 21-105 20-104 (115)
16 1whw_A Hypothetical protein ri 99.9 6E-23 2.1E-27 114.0 11.3 83 23-105 5-87 (99)
17 2kxn_B Transformer-2 protein h 99.9 1.8E-23 6E-28 121.4 9.4 87 19-105 39-125 (129)
18 2x1f_A MRNA 3'-END-processing 99.9 6.6E-23 2.3E-27 113.3 11.0 80 26-105 2-81 (96)
19 1x5u_A Splicing factor 3B subu 99.9 6E-23 2E-27 115.1 10.9 86 20-105 9-94 (105)
20 2dnm_A SRP46 splicing factor; 99.9 2.9E-23 9.8E-28 116.1 9.4 86 20-105 7-92 (103)
21 2jrs_A RNA-binding protein 39; 99.9 9.7E-23 3.3E-27 115.0 11.3 86 20-105 20-105 (108)
22 2lkz_A RNA-binding protein 5; 99.9 1.9E-23 6.7E-28 115.4 8.2 83 23-105 6-94 (95)
23 3p5t_L Cleavage and polyadenyl 99.9 9E-24 3.1E-28 115.6 6.6 79 27-105 2-82 (90)
24 2dgs_A DAZ-associated protein 99.9 1.4E-22 4.8E-27 112.5 11.4 83 22-105 6-88 (99)
25 2dnz_A Probable RNA-binding pr 99.9 1.1E-22 3.8E-27 112.1 11.0 82 24-105 3-84 (95)
26 4f25_A Polyadenylate-binding p 99.9 1.4E-22 4.8E-27 115.5 11.3 79 25-105 4-82 (115)
27 3s7r_A Heterogeneous nuclear r 99.9 3.5E-22 1.2E-26 108.5 12.0 83 20-103 5-87 (87)
28 2div_A TRNA selenocysteine ass 99.9 1.2E-22 4E-27 112.8 10.3 84 23-106 6-94 (99)
29 2cph_A RNA binding motif prote 99.9 1.3E-22 4.3E-27 114.1 10.5 87 20-106 9-97 (107)
30 2cqb_A Peptidyl-prolyl CIS-tra 99.9 9.5E-23 3.3E-27 113.7 9.9 84 22-105 8-91 (102)
31 1oo0_B CG8781-PA, drosophila Y 99.9 1.5E-22 5.2E-27 114.3 10.8 86 20-105 20-105 (110)
32 2ywk_A Putative RNA-binding pr 99.9 2.1E-22 7.2E-27 110.9 10.9 84 21-105 11-94 (95)
33 1x5s_A Cold-inducible RNA-bind 99.9 8.7E-23 3E-27 113.9 9.4 84 22-105 8-91 (102)
34 1x4h_A RNA-binding protein 28; 99.9 2.3E-22 8E-27 113.6 11.3 85 21-105 10-100 (111)
35 1x5t_A Splicing factor 3B subu 99.9 9.4E-23 3.2E-27 112.6 9.4 82 24-105 3-85 (96)
36 3ulh_A THO complex subunit 4; 99.9 4.3E-22 1.5E-26 111.9 12.0 84 20-104 23-106 (107)
37 2cpf_A RNA binding motif prote 99.9 1.7E-22 5.9E-27 111.9 10.3 82 24-105 3-87 (98)
38 3ns6_A Eukaryotic translation 99.9 2.6E-23 8.8E-28 115.9 6.9 82 24-105 4-92 (100)
39 3ucg_A Polyadenylate-binding p 99.9 2.5E-22 8.5E-27 109.4 10.7 80 25-105 5-84 (89)
40 1u6f_A Tcubp1, RNA-binding pro 99.9 3.7E-22 1.3E-26 116.9 12.1 86 20-105 36-121 (139)
41 3n9u_C Cleavage and polyadenyl 99.9 2.1E-22 7.2E-27 120.3 11.2 81 25-105 54-136 (156)
42 2d9p_A Polyadenylate-binding p 99.9 4E-22 1.4E-26 111.4 11.7 83 21-105 10-92 (103)
43 2cqd_A RNA-binding region cont 99.9 3.8E-22 1.3E-26 113.7 11.6 85 20-105 11-95 (116)
44 2dnh_A Bruno-like 5, RNA bindi 99.9 5.2E-22 1.8E-26 111.2 11.9 83 22-105 11-96 (105)
45 2dng_A Eukaryotic translation 99.9 5.6E-22 1.9E-26 110.8 11.9 83 21-105 10-92 (103)
46 2fy1_A RNA-binding motif prote 99.9 2.2E-22 7.4E-27 114.9 10.3 83 22-105 3-85 (116)
47 2dgp_A Bruno-like 4, RNA bindi 99.9 1.7E-22 5.9E-27 113.4 9.4 86 20-105 7-95 (106)
48 4a8x_A RNA-binding protein wit 99.9 2.8E-22 9.5E-27 109.0 9.7 81 25-105 3-84 (88)
49 2cq4_A RNA binding motif prote 99.9 8.8E-23 3E-27 116.0 8.0 81 24-105 23-103 (114)
50 2cpe_A RNA-binding protein EWS 99.9 3.2E-22 1.1E-26 113.5 10.2 85 21-105 10-102 (113)
51 2do0_A HnRNP M, heterogeneous 99.9 1.4E-21 4.8E-26 110.9 12.7 84 21-105 10-93 (114)
52 1wi8_A EIF-4B, eukaryotic tran 99.9 5.1E-22 1.7E-26 111.2 10.6 82 22-105 11-93 (104)
53 2err_A Ataxin-2-binding protei 99.9 2.5E-22 8.7E-27 113.4 9.4 91 13-105 16-106 (109)
54 2cqp_A RNA-binding protein 12; 99.9 2.7E-22 9.2E-27 111.1 9.3 84 22-105 11-94 (98)
55 2cq3_A RNA-binding protein 9; 99.9 1.7E-21 5.7E-26 108.9 12.4 84 20-105 9-92 (103)
56 2kt5_A RNA and export factor-b 99.9 1.3E-21 4.6E-26 112.6 12.4 83 22-105 31-113 (124)
57 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.9 9.7E-22 3.3E-26 115.0 11.9 84 20-103 57-140 (140)
58 1p1t_A Cleavage stimulation fa 99.9 3E-22 1E-26 112.0 9.2 81 25-105 7-87 (104)
59 3ex7_B RNA-binding protein 8A; 99.9 3.9E-22 1.3E-26 115.1 9.7 85 21-105 17-101 (126)
60 2dgw_A Probable RNA-binding pr 99.9 2.1E-21 7E-26 106.3 12.1 82 21-105 5-86 (91)
61 2cqi_A Nucleolysin TIAR; RNA r 99.9 1.9E-21 6.6E-26 108.6 12.2 84 20-105 9-92 (103)
62 2ek1_A RNA-binding protein 12; 99.9 2.5E-22 8.5E-27 110.7 8.4 82 24-105 13-94 (95)
63 2dhg_A TRNA selenocysteine ass 99.9 4.2E-22 1.5E-26 111.4 9.4 83 22-105 5-89 (104)
64 2dgv_A HnRNP M, heterogeneous 99.9 9.1E-22 3.1E-26 107.8 10.5 81 23-105 5-85 (92)
65 1h2v_Z 20 kDa nuclear CAP bind 99.9 1.9E-21 6.6E-26 115.9 12.7 83 23-105 36-118 (156)
66 2rs2_A Musashi-1, RNA-binding 99.9 6.7E-22 2.3E-26 111.7 10.1 88 17-105 16-103 (109)
67 1s79_A Lupus LA protein; RRM, 99.9 3.4E-22 1.1E-26 112.0 8.7 81 22-104 7-87 (103)
68 2dh8_A DAZ-associated protein 99.9 5.4E-22 1.8E-26 111.2 9.4 85 20-105 10-94 (105)
69 2j76_E EIF-4B, EIF4B, eukaryot 99.9 1.3E-22 4.4E-27 113.0 6.8 84 20-105 13-97 (100)
70 2dgx_A KIAA0430 protein; RRM d 99.9 1.2E-21 4E-26 108.4 10.5 80 23-105 6-89 (96)
71 2lea_A Serine/arginine-rich sp 99.9 1.4E-22 4.7E-27 118.5 6.6 88 18-105 39-126 (135)
72 2kn4_A Immunoglobulin G-bindin 99.9 1.6E-21 5.5E-26 116.3 11.3 84 22-105 66-149 (158)
73 2cqg_A TDP-43, TAR DNA-binding 99.9 6.9E-21 2.4E-25 106.3 13.0 84 20-105 9-92 (103)
74 1x4a_A Splicing factor, argini 99.9 5.1E-21 1.7E-25 107.9 12.4 83 20-105 16-98 (109)
75 1x4e_A RNA binding motif, sing 99.9 1.4E-22 4.9E-27 109.6 5.7 82 24-105 3-84 (85)
76 2jwn_A Embryonic polyadenylate 99.9 1.6E-21 5.3E-26 112.3 10.4 80 25-105 35-114 (124)
77 1x5o_A RNA binding motif, sing 99.9 4.9E-21 1.7E-25 108.7 12.2 84 21-105 20-111 (114)
78 2m2b_A RNA-binding protein 10; 99.9 1.9E-22 6.3E-27 117.3 6.1 85 20-105 17-107 (131)
79 2mss_A Protein (musashi1); RNA 99.9 3.5E-22 1.2E-26 105.8 6.7 75 28-103 1-75 (75)
80 1rk8_A CG8781-PA, CG8781-PA pr 99.9 3.9E-21 1.3E-25 115.6 12.0 84 22-105 68-151 (165)
81 2cpi_A CCR4-NOT transcription 99.9 1.8E-21 6.2E-26 110.2 9.9 84 22-105 11-100 (111)
82 2db1_A Heterogeneous nuclear r 99.9 2E-21 6.8E-26 111.2 10.1 82 22-105 13-97 (118)
83 2dis_A Unnamed protein product 99.9 1.5E-21 5.2E-26 110.0 9.2 82 24-105 6-91 (109)
84 1sjq_A Polypyrimidine tract-bi 99.9 1.1E-21 3.7E-26 109.9 8.4 78 22-105 12-91 (105)
85 2ki2_A SS-DNA binding protein 99.9 1.8E-22 6.3E-27 110.2 4.5 78 27-105 2-79 (90)
86 1uaw_A Mouse-musashi-1; RNP-ty 99.9 5.3E-22 1.8E-26 105.4 6.0 76 27-103 1-76 (77)
87 2a3j_A U1 small nuclear ribonu 99.9 3.2E-21 1.1E-25 111.6 9.7 81 22-105 25-109 (127)
88 2nlw_A Eukaryotic translation 99.9 2E-21 6.8E-26 109.1 8.6 82 22-105 11-99 (105)
89 2cpy_A RNA-binding protein 12; 99.9 2.2E-21 7.4E-26 110.3 8.8 83 21-105 10-93 (114)
90 1wg5_A Heterogeneous nuclear r 99.9 3.8E-21 1.3E-25 107.7 9.6 83 21-105 10-93 (104)
91 1x4b_A Heterogeneous nuclear r 99.9 3.7E-21 1.3E-25 109.6 9.6 80 25-105 26-105 (116)
92 2hgl_A HNRPF protein, heteroge 99.9 2.2E-21 7.6E-26 113.4 8.6 83 21-105 39-124 (136)
93 2xnq_A Nuclear polyadenylated 99.9 1.1E-20 3.7E-25 104.7 11.0 82 16-105 12-94 (97)
94 3r27_A HnRNP L, heterogeneous 99.9 6.7E-21 2.3E-25 105.8 10.1 79 21-105 16-96 (100)
95 1wel_A RNA-binding protein 12; 99.9 1E-21 3.5E-26 113.1 7.1 84 21-105 20-103 (124)
96 2fc9_A NCL protein; structure 99.9 9.3E-21 3.2E-25 105.5 10.6 80 22-105 11-90 (101)
97 2jvo_A Nucleolar protein 3; nu 99.9 6.9E-21 2.4E-25 107.4 9.8 79 19-105 24-102 (108)
98 3md3_A Nuclear and cytoplasmic 99.9 2.4E-20 8.4E-25 111.1 12.8 84 22-105 83-166 (166)
99 2fc8_A NCL protein; structure 99.9 1.9E-20 6.6E-25 104.3 11.5 82 21-105 10-91 (102)
100 2cq1_A PTB-like protein L; RRM 99.9 2E-20 6.8E-25 104.3 11.3 78 22-105 11-90 (101)
101 1wez_A HnRNP H', FTP-3, hetero 99.9 6.3E-21 2.2E-25 106.6 9.2 82 21-105 10-91 (102)
102 3q2s_C Cleavage and polyadenyl 99.9 3.4E-21 1.2E-25 121.3 8.9 81 25-105 67-149 (229)
103 2ytc_A PRE-mRNA-splicing facto 99.9 1.5E-20 5.1E-25 101.5 10.1 78 21-104 7-85 (85)
104 1x4c_A Splicing factor, argini 99.9 2.1E-20 7.2E-25 105.3 11.1 76 23-105 12-92 (108)
105 4f02_A Polyadenylate-binding p 99.9 2.2E-20 7.4E-25 116.2 12.1 82 24-105 13-94 (213)
106 2dnn_A RNA-binding protein 12; 99.8 7.5E-21 2.6E-25 107.4 9.0 80 23-105 13-92 (109)
107 1nu4_A U1A RNA binding domain; 99.8 3.8E-21 1.3E-25 106.2 7.6 82 22-106 4-89 (97)
108 1why_A Hypothetical protein ri 99.8 2.3E-20 7.9E-25 103.2 10.8 79 22-106 13-93 (97)
109 2ad9_A Polypyrimidine tract-bi 99.8 9.8E-21 3.4E-25 108.2 9.5 78 22-105 27-106 (119)
110 2dnq_A RNA-binding protein 4B; 99.8 1.6E-20 5.6E-25 102.5 10.0 75 23-105 5-79 (90)
111 1x4g_A Nucleolysin TIAR; struc 99.8 1.3E-20 4.6E-25 106.2 9.8 80 21-106 20-99 (109)
112 2jvr_A Nucleolar protein 3; RN 99.8 7.5E-21 2.6E-25 107.7 8.7 80 22-105 24-104 (111)
113 1x4d_A Matrin 3; structural ge 99.8 5.7E-21 1.9E-25 106.7 8.1 77 23-105 12-91 (102)
114 3lqv_A PRE-mRNA branch site pr 99.8 1.4E-20 4.8E-25 107.0 9.8 80 23-105 5-84 (115)
115 1fxl_A Paraneoplastic encephal 99.8 4E-20 1.4E-24 110.3 12.2 80 26-105 2-81 (167)
116 2dgt_A RNA-binding protein 30; 99.8 4.4E-20 1.5E-24 101.2 11.3 77 21-105 5-81 (92)
117 2lmi_A GRSF-1, G-rich sequence 99.8 2E-21 6.8E-26 109.4 5.3 83 21-105 6-91 (107)
118 2e5j_A Methenyltetrahydrofolat 99.8 1.9E-20 6.5E-25 103.6 9.2 80 21-105 14-93 (97)
119 1wex_A Hypothetical protein (r 99.8 2.4E-20 8.3E-25 104.5 9.6 77 23-105 12-90 (104)
120 2la4_A Nuclear and cytoplasmic 99.8 1.3E-20 4.4E-25 104.9 8.3 79 21-105 22-100 (101)
121 1b7f_A Protein (SXL-lethal pro 99.8 2.9E-20 9.9E-25 111.2 10.4 81 25-105 2-82 (168)
122 2dnp_A RNA-binding protein 14; 99.8 4.6E-20 1.6E-24 100.7 10.1 76 22-105 5-80 (90)
123 2wbr_A GW182, gawky, LD47780P; 99.8 2.5E-20 8.5E-25 100.7 8.8 74 25-104 6-79 (89)
124 1iqt_A AUF1, heterogeneous nuc 99.8 2.3E-21 7.8E-26 102.5 4.7 75 28-103 1-75 (75)
125 1fj7_A Nucleolin RBD1, protein 99.8 1E-21 3.5E-26 109.4 3.5 82 22-105 13-94 (101)
126 2krb_A Eukaryotic translation 99.8 5.1E-21 1.7E-25 102.7 6.0 73 26-100 1-80 (81)
127 2cpj_A Non-POU domain-containi 99.8 3.2E-20 1.1E-24 103.0 9.3 78 22-105 11-88 (99)
128 2cpx_A Hypothetical protein FL 99.8 3.5E-21 1.2E-25 109.4 5.5 80 22-105 21-104 (115)
129 1wf1_A RNA-binding protein RAL 99.8 5E-20 1.7E-24 104.0 10.1 76 22-105 23-99 (110)
130 1whx_A Hypothetical protein ri 99.8 1.8E-20 6E-25 106.2 8.0 76 24-105 8-83 (111)
131 1fjc_A Nucleolin RBD2, protein 99.8 2.7E-20 9.2E-25 102.7 8.5 80 21-105 11-90 (96)
132 2dgu_A Heterogeneous nuclear r 99.8 8.1E-20 2.8E-24 102.0 10.5 75 23-105 8-82 (103)
133 2g4b_A Splicing factor U2AF 65 99.8 9.3E-20 3.2E-24 109.4 11.4 82 23-104 91-172 (172)
134 2cpd_A Apobec-1 stimulating pr 99.8 2E-19 6.7E-24 99.8 11.9 77 21-105 10-88 (99)
135 2f3j_A RNA and export factor b 99.8 3.5E-20 1.2E-24 112.7 9.4 81 24-105 86-166 (177)
136 2hvz_A Splicing factor, argini 99.8 1.4E-20 4.8E-25 104.7 7.0 74 27-105 1-74 (101)
137 2xs2_A Deleted in azoospermia- 99.8 1.3E-20 4.3E-25 105.1 6.6 78 24-104 7-84 (102)
138 2i2y_A Fusion protein consists 99.8 5.1E-20 1.7E-24 109.1 9.6 81 20-105 67-147 (150)
139 2lcw_A RNA-binding protein FUS 99.7 4.1E-22 1.4E-26 113.6 0.0 83 23-105 4-94 (116)
140 1wg1_A KIAA1579 protein, homol 99.8 7.6E-20 2.6E-24 99.5 9.0 76 24-106 3-78 (88)
141 2yh0_A Splicing factor U2AF 65 99.8 1.7E-19 5.8E-24 110.4 11.4 83 24-106 112-194 (198)
142 2e44_A Insulin-like growth fac 99.8 7E-20 2.4E-24 101.0 8.7 80 23-106 12-92 (96)
143 2qfj_A FBP-interacting repress 99.8 1.8E-19 6.3E-24 111.6 11.6 82 24-105 123-204 (216)
144 2kvi_A Nuclear polyadenylated 99.8 4.6E-20 1.6E-24 101.9 7.9 76 22-105 6-82 (96)
145 1x4f_A Matrin 3; structural ge 99.8 6.8E-20 2.3E-24 103.7 8.7 78 22-105 21-101 (112)
146 1l3k_A Heterogeneous nuclear r 99.8 1.9E-19 6.6E-24 110.0 11.5 84 21-105 8-91 (196)
147 2dha_A FLJ20171 protein; RRM d 99.8 2.9E-20 1E-24 107.0 7.2 81 23-105 20-104 (123)
148 3pgw_S U1-70K; protein-RNA com 99.8 1.7E-19 5.9E-24 122.4 11.3 82 24-105 100-181 (437)
149 2cqh_A IGF-II mRNA-binding pro 99.8 6.2E-20 2.1E-24 100.7 7.5 76 23-105 5-82 (93)
150 3egn_A RNA-binding protein 40; 99.8 1.9E-20 6.5E-25 110.1 5.7 83 22-105 41-129 (143)
151 2j8a_A Histone-lysine N-methyl 99.8 1.2E-19 4E-24 104.2 8.7 78 27-104 3-94 (136)
152 2hgm_A HNRPF protein, heteroge 99.8 4.1E-20 1.4E-24 106.7 6.9 82 21-105 37-120 (126)
153 2hgn_A Heterogeneous nuclear r 99.8 9.2E-21 3.1E-25 111.1 4.1 82 21-105 41-122 (139)
154 1b7f_A Protein (SXL-lethal pro 99.8 4.8E-19 1.7E-23 105.8 11.7 82 22-103 85-168 (168)
155 1sjr_A Polypyrimidine tract-bi 99.8 2.5E-19 8.7E-24 107.1 10.2 79 23-105 43-123 (164)
156 3md3_A Nuclear and cytoplasmic 99.8 2.4E-19 8.2E-24 106.8 10.2 78 27-105 1-78 (166)
157 3zzy_A Polypyrimidine tract-bi 99.8 4.8E-19 1.7E-23 102.5 11.0 79 22-105 24-105 (130)
158 2e5g_A U6 snRNA-specific termi 99.8 3.3E-19 1.1E-23 98.0 9.5 76 24-105 6-81 (94)
159 1l3k_A Heterogeneous nuclear r 99.8 9.8E-19 3.3E-23 106.9 12.4 81 24-105 102-182 (196)
160 4f02_A Polyadenylate-binding p 99.8 5.2E-19 1.8E-23 110.0 11.2 79 25-105 102-180 (213)
161 1x5p_A Negative elongation fac 99.8 1.6E-18 5.4E-23 95.8 11.4 77 21-105 10-86 (97)
162 2cjk_A Nuclear polyadenylated 99.8 1.3E-19 4.6E-24 108.2 7.5 80 25-105 86-165 (167)
163 3nmr_A Cugbp ELAV-like family 99.8 9.5E-19 3.3E-23 105.1 11.2 81 23-104 92-175 (175)
164 1fxl_A Paraneoplastic encephal 99.8 9.4E-19 3.2E-23 104.3 10.9 81 23-103 85-167 (167)
165 2qfj_A FBP-interacting repress 99.8 6E-19 2.1E-23 109.2 9.9 80 25-104 27-106 (216)
166 3tyt_A Heterogeneous nuclear r 99.8 7.6E-19 2.6E-23 108.9 10.2 75 25-104 3-78 (205)
167 2e5i_A Heterogeneous nuclear r 99.8 3.2E-18 1.1E-22 98.4 11.8 74 26-105 25-101 (124)
168 3beg_B Splicing factor, argini 99.8 3.7E-19 1.3E-23 101.2 7.4 74 24-104 14-92 (115)
169 2diu_A KIAA0430 protein; struc 99.8 1.1E-18 3.8E-23 95.2 8.8 71 26-106 9-84 (96)
170 3smz_A Protein raver-1, ribonu 99.8 3.9E-18 1.3E-22 109.7 12.4 83 22-105 180-263 (284)
171 2cq2_A Hypothetical protein LO 99.8 7.2E-19 2.5E-23 99.7 7.9 78 22-105 21-105 (114)
172 2voo_A Lupus LA protein; RNA-b 99.8 4E-18 1.4E-22 104.8 11.4 77 26-104 109-185 (193)
173 3d2w_A TAR DNA-binding protein 99.8 2.5E-18 8.5E-23 93.8 9.3 76 21-105 6-83 (89)
174 3pgw_A U1-A; protein-RNA compl 99.8 3.7E-18 1.3E-22 109.7 11.5 81 22-105 5-89 (282)
175 3nmr_A Cugbp ELAV-like family 99.8 2.6E-18 8.7E-23 103.2 10.0 80 25-104 2-86 (175)
176 2hzc_A Splicing factor U2AF 65 99.8 1.8E-18 6.2E-23 93.6 8.3 72 24-102 4-86 (87)
177 2dnl_A Cytoplasmic polyadenyla 99.8 1.8E-18 6.2E-23 98.2 8.6 64 24-88 6-72 (114)
178 1fje_B Nucleolin RBD12, protei 99.8 5.2E-18 1.8E-22 102.1 9.9 78 23-105 96-173 (175)
179 2cjk_A Nuclear polyadenylated 99.8 2.3E-18 8E-23 102.8 8.2 79 25-105 2-80 (167)
180 2pe8_A Splicing factor 45; RRM 99.8 1.1E-17 3.9E-22 93.8 10.3 82 24-105 6-93 (105)
181 3smz_A Protein raver-1, ribonu 99.8 1.5E-17 5.2E-22 106.9 12.4 81 25-105 94-174 (284)
182 2bz2_A Negative elongation fac 99.8 6.4E-18 2.2E-22 97.0 8.9 77 21-105 34-110 (121)
183 3pgw_A U1-A; protein-RNA compl 99.8 1.7E-17 5.7E-22 106.7 11.7 79 22-105 203-282 (282)
184 2ghp_A U4/U6 snRNA-associated 99.8 7.8E-18 2.7E-22 108.7 9.9 83 22-105 206-290 (292)
185 2adc_A Polypyrimidine tract-bi 99.8 7.9E-18 2.7E-22 105.6 9.4 80 21-105 29-109 (229)
186 1wf0_A TDP-43, TAR DNA-binding 99.7 3.1E-18 1.1E-22 93.0 6.1 74 25-105 4-77 (88)
187 3u1l_A PRE-mRNA-splicing facto 99.7 1.3E-17 4.3E-22 105.4 8.3 78 23-106 131-229 (240)
188 1qm9_A Polypyrimidine tract-bi 99.7 9.5E-18 3.3E-22 102.9 6.9 76 25-105 2-78 (198)
189 1fje_B Nucleolin RBD12, protei 99.7 3E-18 1E-22 103.1 3.6 83 21-105 8-90 (175)
190 3sde_A Paraspeckle component 1 99.7 1.2E-16 4.1E-21 102.0 10.3 78 22-105 18-95 (261)
191 2adc_A Polypyrimidine tract-bi 99.7 2.1E-16 7.3E-21 99.1 11.0 76 25-105 150-227 (229)
192 1qm9_A Polypyrimidine tract-bi 99.7 1E-16 3.5E-21 98.2 9.0 76 25-105 119-196 (198)
193 2ghp_A U4/U6 snRNA-associated 99.7 1.1E-16 3.7E-21 103.3 9.3 80 25-105 116-196 (292)
194 2dit_A HIV TAT specific factor 99.7 4.2E-16 1.4E-20 88.1 10.4 81 21-105 10-101 (112)
195 3sde_A Paraspeckle component 1 99.7 4.7E-16 1.6E-20 99.3 10.9 80 25-105 95-178 (261)
196 3tyt_A Heterogeneous nuclear r 99.7 1.5E-16 5.1E-21 98.6 7.8 77 25-103 122-204 (205)
197 1jmt_A Splicing factor U2AF 35 99.7 4.1E-17 1.4E-21 91.3 4.7 72 31-103 20-103 (104)
198 3v4m_A Splicing factor U2AF 65 99.7 3.3E-16 1.1E-20 87.7 7.7 81 25-105 4-96 (105)
199 2g4b_A Splicing factor U2AF 65 99.7 6.8E-16 2.3E-20 92.4 8.9 74 25-105 3-87 (172)
200 2yh0_A Splicing factor U2AF 65 99.6 1.3E-15 4.4E-20 93.1 8.9 74 25-105 3-87 (198)
201 3ue2_A Poly(U)-binding-splicin 99.6 2E-15 6.7E-20 86.2 8.8 80 25-104 19-107 (118)
202 3tht_A Alkylated DNA repair pr 99.6 1.2E-14 4.1E-19 96.0 8.9 77 22-104 14-97 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.6 1.2E-13 4.1E-18 76.6 10.3 73 26-105 10-89 (100)
204 3s6e_A RNA-binding protein 39; 99.5 1.5E-13 5E-18 77.9 9.6 77 24-104 5-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.5 5.5E-13 1.9E-17 72.1 8.2 73 25-106 6-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.4 1.1E-12 3.7E-17 74.9 8.7 78 21-104 13-94 (121)
207 3dxb_A Thioredoxin N-terminall 99.2 5.7E-11 2E-15 74.0 8.4 67 38-104 141-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.2 5.2E-11 1.8E-15 64.7 5.2 73 24-105 13-94 (95)
209 2l9w_A U4/U6 snRNA-associated- 99.1 2.4E-09 8.2E-14 59.5 9.2 73 23-101 18-95 (117)
210 1whv_A Poly(A)-specific ribonu 98.4 3.3E-06 1.1E-10 46.0 7.9 58 22-88 12-69 (100)
211 2dhx_A Poly (ADP-ribose) polym 98.2 6.7E-05 2.3E-09 41.2 10.0 70 24-102 6-80 (104)
212 1wey_A Calcipressin 1; structu 98.2 1.7E-05 5.8E-10 43.7 7.3 74 25-104 4-82 (104)
213 3ctr_A Poly(A)-specific ribonu 98.1 5.5E-06 1.9E-10 45.2 4.9 54 27-89 7-60 (101)
214 1uw4_A UPF3X; nonsense mediate 98.1 3.2E-05 1.1E-09 41.8 7.7 67 27-93 2-70 (91)
215 1wwh_A Nucleoporin 35, nucleop 98.0 6.8E-05 2.3E-09 42.3 7.7 72 23-102 21-93 (119)
216 2l08_A Regulator of nonsense t 97.7 0.00024 8.2E-09 38.7 6.2 78 26-103 9-93 (97)
217 3p3d_A Nucleoporin 53; structu 97.3 0.00025 8.6E-09 40.6 3.7 78 25-104 6-97 (132)
218 3pq1_A Poly(A) RNA polymerase; 97.2 0.00027 9.1E-09 48.6 3.5 56 26-87 53-108 (464)
219 2i2y_A Fusion protein consists 96.6 0.00097 3.3E-08 38.7 2.1 40 65-105 10-50 (150)
220 2kn4_A Immunoglobulin G-bindin 96.4 0.0057 2E-07 35.6 4.3 33 56-90 3-35 (158)
221 3d45_A Poly(A)-specific ribonu 95.9 0.061 2.1E-06 37.5 8.1 55 26-89 440-494 (507)
222 2g0c_A ATP-dependent RNA helic 75.7 5.8 0.0002 19.7 5.6 69 28-105 2-76 (76)
223 4e8u_A Putative uncharacterize 47.8 42 0.0014 20.0 6.1 55 29-86 15-81 (172)
224 3lpe_A Putative transcription 40.1 26 0.0009 18.3 2.6 26 67-92 49-74 (92)
225 4bby_A Alkyldihydroxyacetoneph 36.9 72 0.0025 23.0 5.1 55 33-88 350-408 (658)
226 3fut_A Dimethyladenosine trans 32.9 53 0.0018 20.8 3.5 32 26-58 110-141 (271)
227 1xn9_A 30S ribosomal protein S 31.5 65 0.0022 17.3 5.5 49 36-85 28-81 (101)
228 1fme_A FSD-EY peptide; beta-BE 31.3 27 0.00093 13.6 1.3 12 39-50 14-25 (28)
229 3uzu_A Ribosomal RNA small sub 28.5 34 0.0012 21.7 2.1 33 27-59 115-147 (279)
230 4eyt_A Telomerase associated p 28.5 72 0.0025 16.9 9.7 56 25-88 11-66 (129)
231 2dzr_A General transcription f 28.3 74 0.0025 17.0 3.2 32 25-56 40-79 (99)
232 2d9b_A Gtfii-I, general transc 28.1 79 0.0027 17.3 3.4 31 26-56 51-89 (109)
233 2v94_A RPS24, 30S ribosomal pr 28.0 79 0.0027 17.2 5.5 48 36-84 37-89 (107)
234 3h7h_B Transcription elongatio 27.7 47 0.0016 18.0 2.3 26 67-92 50-75 (106)
235 2g1d_A 30S ribosomal protein S 27.2 73 0.0025 17.0 3.0 47 36-83 29-80 (98)
236 3fjv_A Uncharacterized novel p 27.0 1.1E+02 0.0038 18.6 4.9 47 39-92 66-112 (194)
237 1ywx_A 30S ribosomal protein S 27.0 81 0.0028 17.0 5.6 47 36-83 28-79 (102)
238 2rf4_B DNA-directed RNA polyme 26.9 49 0.0017 17.3 2.1 28 23-50 16-43 (87)
239 3j21_T 50S ribosomal protein L 25.5 79 0.0027 16.4 5.4 54 31-87 27-82 (86)
240 1ytr_A Bacteriocin plantaricin 25.5 39 0.0013 12.9 1.4 12 40-51 14-25 (26)
241 3p8b_B Transcription antitermi 24.4 73 0.0025 18.1 2.9 26 67-92 42-67 (152)
242 3tqs_A Ribosomal RNA small sub 23.2 27 0.00092 21.8 0.9 31 29-59 99-129 (255)
243 1igq_A Transcriptional repress 22.1 82 0.0028 15.4 2.6 22 55-77 21-42 (62)
244 1qyr_A KSGA, high level kasuga 21.4 1E+02 0.0036 19.0 3.3 22 28-49 92-113 (252)
245 2exu_A Transcription initiatio 21.4 72 0.0025 19.4 2.5 27 67-93 148-174 (200)
246 4aj5_1 SKA3, spindle and kinet 21.3 35 0.0012 18.4 1.0 11 41-51 91-101 (101)
247 3ftd_A Dimethyladenosine trans 20.7 79 0.0027 19.5 2.6 23 28-50 97-119 (249)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.94 E-value=9e-26 Score=125.75 Aligned_cols=81 Identities=35% Similarity=0.619 Sum_probs=78.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.+++++.+|.++|||||+|.+.++|++|++.|+|..++|++|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 46789999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred C
Q 034021 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 7
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.92 E-value=5.2e-24 Score=120.63 Aligned_cols=82 Identities=26% Similarity=0.284 Sum_probs=78.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
...++|||+|||+++++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|++|+..|||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cC
Q 034021 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 65
No 3
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.91 E-value=2.4e-23 Score=113.03 Aligned_cols=82 Identities=39% Similarity=0.683 Sum_probs=76.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..|++..+.|++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999999999878999999999999999999999999999999999999998
Q ss_pred cC
Q 034021 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
++
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 76
No 4
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.91 E-value=1.6e-23 Score=113.35 Aligned_cols=82 Identities=37% Similarity=0.613 Sum_probs=77.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 102 (106)
....++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|++|+..|++..+.|++|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999987888999999999999999999999999999999999999
Q ss_pred cc
Q 034021 103 AH 104 (106)
Q Consensus 103 s~ 104 (106)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 5
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.91 E-value=3.9e-23 Score=111.32 Aligned_cols=79 Identities=39% Similarity=0.698 Sum_probs=76.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 034021 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~~ 105 (106)
++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|+|||+|.+.++|++|+..|+|..++|++|+|.++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 5899999999999999999999999999999999988899999999999999999999999999999999999999876
No 6
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.91 E-value=5.5e-23 Score=113.28 Aligned_cols=86 Identities=34% Similarity=0.514 Sum_probs=80.3
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
...+...++|||+|||.++++++|+++|+.||.|..+.+..++.++..+|+|||+|.+.++|++|+..|++..+.|++|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34555678999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|++++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999875
No 7
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=113.11 Aligned_cols=84 Identities=26% Similarity=0.603 Sum_probs=78.9
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..+. ++..+|+|||+|.+.++|++|+..|++..+.|++|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 445567899999999999999999999999999999999988 8899999999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++++
T Consensus 91 ~~a~~ 95 (100)
T 2do4_A 91 AISNS 95 (100)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99875
No 8
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.90 E-value=3e-23 Score=118.56 Aligned_cols=84 Identities=30% Similarity=0.479 Sum_probs=78.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|+..|++..++|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456799999999999999999999999999999999999878899999999999999999999999999999999999
Q ss_pred Eecc
Q 034021 101 NYAH 104 (106)
Q Consensus 101 ~~s~ 104 (106)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9975
No 9
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=5.9e-23 Score=113.00 Aligned_cols=84 Identities=23% Similarity=0.432 Sum_probs=78.7
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..|++..+.|++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 44556789999999999999999999999999999999999878889999999999999999999999999999999999
Q ss_pred Eecc
Q 034021 101 NYAH 104 (106)
Q Consensus 101 ~~s~ 104 (106)
++|+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 10
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.90 E-value=2.8e-24 Score=117.99 Aligned_cols=79 Identities=23% Similarity=0.454 Sum_probs=73.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh-CCceeCCeEEEEEecc
Q 034021 27 TKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM-DGLLLDGRNIRVNYAH 104 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l-~~~~~~g~~l~v~~s~ 104 (106)
.+|||+|||.++++++|+++|+.|| .|..+.+++++.++.++|||||+|.+.++|++|++.+ ++..++|++|+|++|+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 7999999999888999999999999999999999977 4567999999999987
Q ss_pred C
Q 034021 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 82 ~ 82 (91)
T 2lxi_A 82 P 82 (91)
T ss_dssp S
T ss_pred C
Confidence 5
No 11
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=5.7e-23 Score=114.86 Aligned_cols=85 Identities=31% Similarity=0.482 Sum_probs=80.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34556899999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++++
T Consensus 90 ~~a~~ 94 (103)
T 2cq0_A 90 EWAKP 94 (103)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 99875
No 12
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=4.1e-23 Score=115.96 Aligned_cols=85 Identities=27% Similarity=0.456 Sum_probs=79.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|++|+..|+|..+.|+.|+|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 34456789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++.+
T Consensus 98 ~~a~~ 102 (106)
T 1p27_B 98 DWCFV 102 (106)
T ss_dssp EESEE
T ss_pred EeecC
Confidence 99865
No 13
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.90 E-value=9.3e-23 Score=116.03 Aligned_cols=86 Identities=38% Similarity=0.660 Sum_probs=80.5
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.++.+..++..+|||||+|.+.++|++|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999999999999999999987899999999999999999999999999999999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|.++++
T Consensus 89 V~~a~~ 94 (115)
T 2dgo_A 89 TNWATR 94 (115)
T ss_dssp EEESSC
T ss_pred EEEccC
Confidence 999875
No 14
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.90 E-value=7e-23 Score=113.81 Aligned_cols=85 Identities=28% Similarity=0.435 Sum_probs=79.3
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCc
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--------VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL 91 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~ 91 (106)
...+...++|||+|||.++++++|+++|+.||.|.. +.++.++.++..+|+|||+|.+.++|++|++.|+|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345556789999999999999999999999999999 999999888999999999999999999999999999
Q ss_pred eeCCeEEEEEecc
Q 034021 92 LLDGRNIRVNYAH 104 (106)
Q Consensus 92 ~~~g~~l~v~~s~ 104 (106)
.+.|++|+|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999985
No 15
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.90 E-value=8e-23 Score=116.34 Aligned_cols=85 Identities=25% Similarity=0.455 Sum_probs=79.6
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 44456789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
+++++
T Consensus 100 ~~a~~ 104 (115)
T 2cpz_A 100 QLKRS 104 (115)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99875
No 16
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.90 E-value=6e-23 Score=113.97 Aligned_cols=83 Identities=29% Similarity=0.479 Sum_probs=78.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 102 (106)
....++|||+|||.++++++|+++|+.||.|..+.+..+..++..+|||||+|.+.++|++|+..|++..+.|++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccC
Q 034021 103 AHK 105 (106)
Q Consensus 103 s~~ 105 (106)
+++
T Consensus 85 a~~ 87 (99)
T 1whw_A 85 STI 87 (99)
T ss_dssp CCC
T ss_pred cCC
Confidence 875
No 17
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.90 E-value=1.8e-23 Score=121.44 Aligned_cols=87 Identities=33% Similarity=0.532 Sum_probs=81.0
Q ss_pred cccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 034021 19 LLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 19 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l 98 (106)
....+...++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|+..|++..+.|++|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34455678899999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred EEEeccC
Q 034021 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~s~~ 105 (106)
+|+++.+
T Consensus 119 ~V~~a~~ 125 (129)
T 2kxn_B 119 RVDFSIT 125 (129)
T ss_dssp EESCCSS
T ss_pred EEEEecC
Confidence 9999875
No 18
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.90 E-value=6.6e-23 Score=113.32 Aligned_cols=80 Identities=26% Similarity=0.623 Sum_probs=76.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 034021 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~~ 105 (106)
.++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|++|+..|+|..++|+.|+|.++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57899999999999999999999999999999999987899999999999999999999999999999999999999875
No 19
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=6e-23 Score=115.09 Aligned_cols=86 Identities=43% Similarity=0.651 Sum_probs=80.5
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.+..+..++..+|||||+|.+.++|++|+..|++..+.|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556788999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|.++++
T Consensus 89 v~~a~~ 94 (105)
T 1x5u_A 89 VNKASA 94 (105)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 999875
No 20
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=2.9e-23 Score=116.09 Aligned_cols=86 Identities=31% Similarity=0.486 Sum_probs=80.3
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|++|+..|++..+.|++|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34555679999999999999999999999999999999999987899999999999999999999999999999999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|.++++
T Consensus 87 V~~a~~ 92 (103)
T 2dnm_A 87 VQVARY 92 (103)
T ss_dssp EEECSS
T ss_pred EEECCc
Confidence 999875
No 21
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.90 E-value=9.7e-23 Score=115.01 Aligned_cols=86 Identities=28% Similarity=0.646 Sum_probs=80.3
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|+..++|..+.|++|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34455678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|+++++
T Consensus 100 V~~a~~ 105 (108)
T 2jrs_A 100 VGHVTE 105 (108)
T ss_dssp EECSCS
T ss_pred EEEccc
Confidence 999875
No 22
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.90 E-value=1.9e-23 Score=115.43 Aligned_cols=83 Identities=22% Similarity=0.430 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCC--eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCc----eeCCe
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGE--IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL----LLDGR 96 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~----~~~g~ 96 (106)
...-.+|||+|||+++++++|+++|++||. +..+.+++++.++.++|||||+|.+.++|++|++.|++. .++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345678999999999999999999999995 678999999989999999999999999999999999986 48999
Q ss_pred EEEEEeccC
Q 034021 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~l~v~~s~~ 105 (106)
+|.|++|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999874
No 23
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.90 E-value=9e-24 Score=115.64 Aligned_cols=79 Identities=32% Similarity=0.502 Sum_probs=72.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 034021 27 TKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~ 104 (106)
.+|||+|||.++++++|+++|+.|| .|..+.++.++.+|.++|||||+|.+.++|++|+..|+|..+.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999998899999999999999999999999999999999999999986
Q ss_pred C
Q 034021 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 5
No 24
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=1.4e-22 Score=112.54 Aligned_cols=83 Identities=29% Similarity=0.560 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|+. +++..+.|++|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999998888899999999999999999999 99999999999999
Q ss_pred eccC
Q 034021 102 YAHK 105 (106)
Q Consensus 102 ~s~~ 105 (106)
++++
T Consensus 85 ~a~~ 88 (99)
T 2dgs_A 85 RAEP 88 (99)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9875
No 25
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=112.07 Aligned_cols=82 Identities=30% Similarity=0.662 Sum_probs=77.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..|++..+.|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999999878999999999999999999999999999999999999998
Q ss_pred cC
Q 034021 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
++
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 65
No 26
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=1.4e-22 Score=115.48 Aligned_cols=79 Identities=37% Similarity=0.698 Sum_probs=72.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~ 104 (106)
...+|||+|||.++++++|+++|+.||.|..+.++++. +.++|||||+|.+.++|++|+..|++..+.|++|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999885 3478999999999999999999999999999999999976
Q ss_pred C
Q 034021 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 82 ~ 82 (115)
T 4f25_A 82 S 82 (115)
T ss_dssp C
T ss_pred C
Confidence 4
No 27
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.89 E-value=3.5e-22 Score=108.52 Aligned_cols=83 Identities=36% Similarity=0.633 Sum_probs=76.0
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
...+...++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|++|+. +++..+.|++|+
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 3455678899999999999999999999999999999999998889999999999999999999997 588899999999
Q ss_pred EEec
Q 034021 100 VNYA 103 (106)
Q Consensus 100 v~~s 103 (106)
|++|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 28
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=112.80 Aligned_cols=84 Identities=33% Similarity=0.591 Sum_probs=78.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCee-EEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeE----
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEII-EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN---- 97 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~---- 97 (106)
....++|||+|||.++++++|+++|+.||.|. .+.++.++.++..+|||||+|.+.++|++|+..|++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44578999999999999999999999999999 9999999888999999999999999999999999999999999
Q ss_pred EEEEeccCC
Q 034021 98 IRVNYAHKD 106 (106)
Q Consensus 98 l~v~~s~~~ 106 (106)
|+|.++++.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998763
No 29
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=1.3e-22 Score=114.05 Aligned_cols=87 Identities=23% Similarity=0.530 Sum_probs=80.1
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeec-CCCCCceeEEEEEecCHHHHHHHHHHh-CCceeCCeE
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICD-RVTGQSRGYGFVKFASEAAAGEAIKEM-DGLLLDGRN 97 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~g~~fv~f~~~~~a~~al~~l-~~~~~~g~~ 97 (106)
.......++|||+|||.++++++|+++|+.||.|..+.++.+ ..++.++|||||+|.+.++|++|+..| ++..+.|++
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 344556789999999999999999999999999999999988 678889999999999999999999999 999999999
Q ss_pred EEEEeccCC
Q 034021 98 IRVNYAHKD 106 (106)
Q Consensus 98 l~v~~s~~~ 106 (106)
|+|++++++
T Consensus 89 l~v~~a~~~ 97 (107)
T 2cph_A 89 LVLEWADSE 97 (107)
T ss_dssp CEEEECCCC
T ss_pred EEEEeCCCC
Confidence 999998763
No 30
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=9.5e-23 Score=113.72 Aligned_cols=84 Identities=36% Similarity=0.585 Sum_probs=78.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|+..|++..+.|++|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999988788999999999999999999999999999999999999
Q ss_pred eccC
Q 034021 102 YAHK 105 (106)
Q Consensus 102 ~s~~ 105 (106)
++++
T Consensus 88 ~a~~ 91 (102)
T 2cqb_A 88 LAKP 91 (102)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 9875
No 31
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.89 E-value=1.5e-22 Score=114.34 Aligned_cols=86 Identities=24% Similarity=0.426 Sum_probs=79.8
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|++|+..|+|..+.|++|+
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 33445678999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|.++.+
T Consensus 100 V~~a~~ 105 (110)
T 1oo0_B 100 VDWCFV 105 (110)
T ss_dssp EEESEE
T ss_pred EEEccc
Confidence 999864
No 32
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.89 E-value=2.1e-22 Score=110.95 Aligned_cols=84 Identities=29% Similarity=0.509 Sum_probs=77.7
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..++ ++.++|+|||+|.+.++|++|+..|++..+.|++|+|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 445567899999999999999999999999999999999988 4889999999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
++++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99864
No 33
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=8.7e-23 Score=113.89 Aligned_cols=84 Identities=49% Similarity=0.756 Sum_probs=79.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|+..|++..+.|++|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999988788899999999999999999999999999999999999
Q ss_pred eccC
Q 034021 102 YAHK 105 (106)
Q Consensus 102 ~s~~ 105 (106)
++++
T Consensus 88 ~a~~ 91 (102)
T 1x5s_A 88 QAGK 91 (102)
T ss_dssp EEEC
T ss_pred ECCC
Confidence 9875
No 34
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=2.3e-22 Score=113.62 Aligned_cols=85 Identities=33% Similarity=0.575 Sum_probs=79.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhC------CceeC
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD------GLLLD 94 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~------~~~~~ 94 (106)
......++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|+..++ +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345567899999999999999999999999999999999998888999999999999999999999999 99999
Q ss_pred CeEEEEEeccC
Q 034021 95 GRNIRVNYAHK 105 (106)
Q Consensus 95 g~~l~v~~s~~ 105 (106)
|++|+|.++.+
T Consensus 90 g~~l~v~~a~~ 100 (111)
T 1x4h_A 90 GRQLKVDLAVT 100 (111)
T ss_dssp SCEEEEECCCC
T ss_pred CEEEEEEECCC
Confidence 99999999865
No 35
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=9.4e-23 Score=112.58 Aligned_cols=82 Identities=40% Similarity=0.673 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEE-EEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 102 (106)
...++|||+|||.++++++|+++|+.||.|..+ .++.++.++.++|||||+|.+.++|++|+..|++..+.|++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 9999877899999999999999999999999999999999999999
Q ss_pred ccC
Q 034021 103 AHK 105 (106)
Q Consensus 103 s~~ 105 (106)
+.+
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 865
No 36
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.89 E-value=4.3e-22 Score=111.91 Aligned_cols=84 Identities=26% Similarity=0.483 Sum_probs=78.4
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.++.+. ++.++|+|||+|.+.++|++|+..|++..+.|++|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3445568999999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred EEecc
Q 034021 100 VNYAH 104 (106)
Q Consensus 100 v~~s~ 104 (106)
|+++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 37
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=1.7e-22 Score=111.93 Aligned_cols=82 Identities=28% Similarity=0.524 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCC---CCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRV---TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..+.. ++..+|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999988765 4478999999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++++
T Consensus 83 ~~a~~ 87 (98)
T 2cpf_A 83 RISER 87 (98)
T ss_dssp ECSSC
T ss_pred EEccC
Confidence 99875
No 38
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.89 E-value=2.6e-23 Score=115.89 Aligned_cols=82 Identities=22% Similarity=0.367 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC-e
Q 034021 24 NSRTKLFIGGLSY------DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG-R 96 (106)
Q Consensus 24 ~~~~~l~v~~lp~------~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g-~ 96 (106)
...++|||+|||. ++++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|++|+..|+|..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467999999999 99999999999999999999999999889999999999999999999999999999999 9
Q ss_pred EEEEEeccC
Q 034021 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~l~v~~s~~ 105 (106)
+|+|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999853
No 39
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.89 E-value=2.5e-22 Score=109.42 Aligned_cols=80 Identities=21% Similarity=0.605 Sum_probs=76.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|++|+ .+++..+.|++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3578999999999999999999999999999999999888999999999999999999999 899999999999999987
Q ss_pred C
Q 034021 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 40
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.89 E-value=3.7e-22 Score=116.90 Aligned_cols=86 Identities=34% Similarity=0.580 Sum_probs=80.1
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..|++..+.|++|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34455678999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|.++++
T Consensus 116 v~~a~~ 121 (139)
T 1u6f_A 116 VALAAS 121 (139)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 999875
No 41
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.89 E-value=2.1e-22 Score=120.27 Aligned_cols=81 Identities=28% Similarity=0.512 Sum_probs=76.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 102 (106)
..++|||+|||+++++++|+++|+.|| .|..+.++.++.+|.++|||||+|.+.++|++|+..|+|..++|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999988999999999999999999999999999999999999999
Q ss_pred ccC
Q 034021 103 AHK 105 (106)
Q Consensus 103 s~~ 105 (106)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 42
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=4e-22 Score=111.38 Aligned_cols=83 Identities=29% Similarity=0.539 Sum_probs=77.6
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..+ ++..++||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 44557889999999999999999999999999999999887 7888999999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++++
T Consensus 88 ~~a~~ 92 (103)
T 2d9p_A 88 ALAQR 92 (103)
T ss_dssp EECSS
T ss_pred EEecc
Confidence 99875
No 43
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=3.8e-22 Score=113.67 Aligned_cols=85 Identities=45% Similarity=0.697 Sum_probs=78.9
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
...+...++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|+..+++ .+.|++|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 44556789999999999999999999999999999999999988899999999999999999999999998 89999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|+++.+
T Consensus 90 V~~a~~ 95 (116)
T 2cqd_A 90 VNLAYL 95 (116)
T ss_dssp EEESTT
T ss_pred EEEccc
Confidence 999854
No 44
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.89 E-value=5.2e-22 Score=111.23 Aligned_cols=83 Identities=30% Similarity=0.430 Sum_probs=77.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC---eEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG---RNI 98 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g---~~l 98 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..++ ++.++|||||+|.+.++|++|+..|++..+.| ++|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34457899999999999999999999999999999999988 78899999999999999999999999999988 999
Q ss_pred EEEeccC
Q 034021 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~s~~ 105 (106)
+|.++++
T Consensus 90 ~V~~a~~ 96 (105)
T 2dnh_A 90 VVKFADT 96 (105)
T ss_dssp EEEESCS
T ss_pred EEEECcc
Confidence 9999875
No 45
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.89 E-value=5.6e-22 Score=110.85 Aligned_cols=83 Identities=25% Similarity=0.467 Sum_probs=77.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||.++++++|+++|+.|| |..+.++.+..++.++|||||+|.+.++|++|+ .|++..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3445678999999999999999999999997 999999999888999999999999999999999 79999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++++
T Consensus 88 ~~a~~ 92 (103)
T 2dng_A 88 DIAEG 92 (103)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99875
No 46
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.89 E-value=2.2e-22 Score=114.88 Aligned_cols=83 Identities=49% Similarity=0.796 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~ 101 (106)
+....++|||+|||.++++++|+++|+.||.|..+.+..+. ++..+|||||+|.+.++|++|+..|++..+.|+.|+|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999988 88899999999999999999999999999999999999
Q ss_pred eccC
Q 034021 102 YAHK 105 (106)
Q Consensus 102 ~s~~ 105 (106)
++++
T Consensus 82 ~a~~ 85 (116)
T 2fy1_A 82 QAKK 85 (116)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9875
No 47
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.89 E-value=1.7e-22 Score=113.38 Aligned_cols=86 Identities=29% Similarity=0.419 Sum_probs=79.5
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee---CCe
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL---DGR 96 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~---~g~ 96 (106)
...+...++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+ .|+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34555678999999999999999999999999999999999988899999999999999999999999999987 889
Q ss_pred EEEEEeccC
Q 034021 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~l~v~~s~~ 105 (106)
+|+|.++++
T Consensus 87 ~l~v~~a~~ 95 (106)
T 2dgp_A 87 PIQVKPADS 95 (106)
T ss_dssp CCEEEECCC
T ss_pred eEEEEECCc
Confidence 999999875
No 48
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.88 E-value=2.8e-22 Score=108.96 Aligned_cols=81 Identities=28% Similarity=0.508 Sum_probs=75.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCC-ceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ-SRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
..++|||+|||.++++++|+++|+.||.|..+.+..+..++. .+|+|||+|.+.++|++|+..|+|..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467899999999999999999999999999999988876555 7899999999999999999999999999999999998
Q ss_pred cC
Q 034021 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 49
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=8.8e-23 Score=115.99 Aligned_cols=81 Identities=26% Similarity=0.377 Sum_probs=76.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.++.+..++..+|||||+|.+.++|++|+ .|++..+.|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34689999999999999999999999999999999999878899999999999999999999 89999999999999997
Q ss_pred cC
Q 034021 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
++
T Consensus 102 ~~ 103 (114)
T 2cq4_A 102 QA 103 (114)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 50
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.2e-22 Score=113.46 Aligned_cols=85 Identities=24% Similarity=0.427 Sum_probs=79.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCee--------EEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEII--------EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
......++|||+|||.++++++|+++|+.||.|. .+.++.++.++..+|||||+|.+.++|++|+..|++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3455679999999999999999999999999998 69999987789999999999999999999999999999
Q ss_pred eCCeEEEEEeccC
Q 034021 93 LDGRNIRVNYAHK 105 (106)
Q Consensus 93 ~~g~~l~v~~s~~ 105 (106)
+.|++|+|.++++
T Consensus 90 ~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 90 FQGSKLKVSLARK 102 (113)
T ss_dssp ETTEECEEECSSC
T ss_pred cCCCEEEEEECCC
Confidence 9999999999875
No 51
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=110.93 Aligned_cols=84 Identities=27% Similarity=0.493 Sum_probs=77.9
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..+. ++..+|+|||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 344567899999999999999999999999999999999987 6889999999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
+++++
T Consensus 89 ~~a~~ 93 (114)
T 2do0_A 89 KMDER 93 (114)
T ss_dssp EECSC
T ss_pred EEccc
Confidence 99864
No 52
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=5.1e-22 Score=111.19 Aligned_cols=82 Identities=23% Similarity=0.429 Sum_probs=76.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCC-CCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVT-GQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
.....++|||+|||.++++++|+++|+.|| |..+.++.++.+ +..+|||||+|.+.++|++|+ .|++..+.|++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 445678999999999999999999999999 999999998876 889999999999999999999 89999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++.+
T Consensus 89 ~~a~~ 93 (104)
T 1wi8_A 89 DVADQ 93 (104)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99865
No 53
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.5e-22 Score=113.43 Aligned_cols=91 Identities=27% Similarity=0.539 Sum_probs=78.1
Q ss_pred CccccccccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 034021 13 SVRFTRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
++..+.........++|||+|||.++++++|+++|+.||.|..+.+..+. +..+|||||+|.+.++|++|+..|+|..
T Consensus 16 ~~~~S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~ 93 (109)
T 2err_A 16 PRGSHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTV 93 (109)
T ss_dssp ------CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCE
T ss_pred CCCCCCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCE
Confidence 33334455666678999999999999999999999999999999998885 3378999999999999999999999999
Q ss_pred eCCeEEEEEeccC
Q 034021 93 LDGRNIRVNYAHK 105 (106)
Q Consensus 93 ~~g~~l~v~~s~~ 105 (106)
+.|++|+|+++++
T Consensus 94 ~~g~~l~V~~a~~ 106 (109)
T 2err_A 94 VEGRKIEVNNATA 106 (109)
T ss_dssp ETTEECEEEECCC
T ss_pred ECCEEEEEEECCC
Confidence 9999999999876
No 54
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=2.7e-22 Score=111.15 Aligned_cols=84 Identities=14% Similarity=0.178 Sum_probs=77.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.++.+..++..+|+|||+|.+.++|++|+..|++..+.|++|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34457899999999999999999999999999888788887789999999999999999999999999999999999999
Q ss_pred eccC
Q 034021 102 YAHK 105 (106)
Q Consensus 102 ~s~~ 105 (106)
++..
T Consensus 91 ~a~~ 94 (98)
T 2cqp_A 91 LGSG 94 (98)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 9864
No 55
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.7e-21 Score=108.85 Aligned_cols=84 Identities=30% Similarity=0.616 Sum_probs=76.7
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.++.+.. ..+++|||+|.+.++|++|+..|++..+.|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556679999999999999999999999999999999998863 2789999999999999999999999999999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|.++.+
T Consensus 87 v~~a~~ 92 (103)
T 2cq3_A 87 VNNATA 92 (103)
T ss_dssp EEECCS
T ss_pred EEEccc
Confidence 999875
No 56
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.88 E-value=1.3e-21 Score=112.61 Aligned_cols=83 Identities=27% Similarity=0.488 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..+. ++..+|+|||+|.+.++|++|+..+++..+.|++|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34556899999999999999999999999999999999988 88899999999999999999999999999999999999
Q ss_pred eccC
Q 034021 102 YAHK 105 (106)
Q Consensus 102 ~s~~ 105 (106)
+|.+
T Consensus 110 ~a~~ 113 (124)
T 2kt5_A 110 LVAS 113 (124)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9875
No 57
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.88 E-value=9.7e-22 Score=115.02 Aligned_cols=84 Identities=36% Similarity=0.583 Sum_probs=77.8
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|+|||+|.+.++|++|+..|++..+.|++|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34455689999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEec
Q 034021 100 VNYA 103 (106)
Q Consensus 100 v~~s 103 (106)
|++|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 58
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3e-22 Score=111.97 Aligned_cols=81 Identities=32% Similarity=0.707 Sum_probs=77.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|++|+..|+|..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45789999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred C
Q 034021 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 87 ~ 87 (104)
T 1p1t_A 87 S 87 (104)
T ss_dssp C
T ss_pred C
Confidence 5
No 59
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.88 E-value=3.9e-22 Score=115.08 Aligned_cols=85 Identities=27% Similarity=0.456 Sum_probs=79.3
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34456789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++.+
T Consensus 97 ~~a~~ 101 (126)
T 3ex7_B 97 DWCFV 101 (126)
T ss_dssp EESEE
T ss_pred EEecC
Confidence 99864
No 60
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=2.1e-21 Score=106.28 Aligned_cols=82 Identities=20% Similarity=0.393 Sum_probs=76.4
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||.++++++|+++|+.| .|..+.++++ .++..+|+|||+|.+.++|++|+. +++..++|++|+|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 345567899999999999999999999999 8999999998 589999999999999999999999 9999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++++
T Consensus 82 ~~a~~ 86 (91)
T 2dgw_A 82 FREKS 86 (91)
T ss_dssp EEESS
T ss_pred EECCc
Confidence 99875
No 61
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.9e-21 Score=108.59 Aligned_cols=84 Identities=29% Similarity=0.522 Sum_probs=76.4
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.++.+... .+|||||+|.+.++|++|+..|++..+.|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 345556899999999999999999999999999999999988533 578999999999999999999999999999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|.++++
T Consensus 87 V~~a~~ 92 (103)
T 2cqi_A 87 VNWATT 92 (103)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999875
No 62
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.88 E-value=2.5e-22 Score=110.66 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=75.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.++.+..++..+|+|||+|.+.++|++|+..|++..+.|++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999988888888878899999999999999999999999999999999999998
Q ss_pred cC
Q 034021 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 63
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=4.2e-22 Score=111.42 Aligned_cols=83 Identities=33% Similarity=0.535 Sum_probs=77.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcc-CCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCce-eCCeEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQ-HGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL-LDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~-~~g~~l~ 99 (106)
.....++|||+|||.++++++|+++|+. ||.|..+.++.+. ++.++|||||+|.+.++|++|+..|++.. +.|++|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4456789999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|.++.+
T Consensus 84 v~~a~~ 89 (104)
T 2dhg_A 84 LSVAIP 89 (104)
T ss_dssp CCBCCC
T ss_pred EEEccC
Confidence 999864
No 64
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.88 E-value=9.1e-22 Score=107.81 Aligned_cols=81 Identities=31% Similarity=0.585 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 102 (106)
....++|||+|||.++++++|+++|+.||.|..+.+..+ ++..+|+|||+|.+.++|++|+..|++..+.|++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 446789999999999999999999999999999999874 678899999999999999999999999999999999999
Q ss_pred ccC
Q 034021 103 AHK 105 (106)
Q Consensus 103 s~~ 105 (106)
+++
T Consensus 83 a~~ 85 (92)
T 2dgv_A 83 DRN 85 (92)
T ss_dssp CSC
T ss_pred cCC
Confidence 875
No 65
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.88 E-value=1.9e-21 Score=115.87 Aligned_cols=83 Identities=28% Similarity=0.508 Sum_probs=78.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 102 (106)
....++|||+|||.++++++|+++|+.||.|..+.++.+..++..++||||+|.+.++|++|+..|++..+.|++|+|++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccC
Q 034021 103 AHK 105 (106)
Q Consensus 103 s~~ 105 (106)
+++
T Consensus 116 a~~ 118 (156)
T 1h2v_Z 116 DAG 118 (156)
T ss_dssp ESC
T ss_pred CCC
Confidence 864
No 66
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.88 E-value=6.7e-22 Score=111.70 Aligned_cols=88 Identities=36% Similarity=0.567 Sum_probs=74.0
Q ss_pred cccccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCe
Q 034021 17 TRLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR 96 (106)
Q Consensus 17 ~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~ 96 (106)
..........++|||+|||.++++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|++|+..+ +..++|+
T Consensus 16 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~ 94 (109)
T 2rs2_A 16 PRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK 94 (109)
T ss_dssp ----------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE
T ss_pred ccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE
Confidence 444556667899999999999999999999999999999999999878999999999999999999999975 5899999
Q ss_pred EEEEEeccC
Q 034021 97 NIRVNYAHK 105 (106)
Q Consensus 97 ~l~v~~s~~ 105 (106)
.|+|.++.+
T Consensus 95 ~l~V~~a~~ 103 (109)
T 2rs2_A 95 TIDPKVAFP 103 (109)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999865
No 67
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.4e-22 Score=111.96 Aligned_cols=81 Identities=15% Similarity=0.272 Sum_probs=75.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+++++. +.++|||||+|.+.++|++|+. +++..+.|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 445678999999999999999999999999999999999885 8899999999999999999999 89999999999999
Q ss_pred ecc
Q 034021 102 YAH 104 (106)
Q Consensus 102 ~s~ 104 (106)
++.
T Consensus 85 ~~~ 87 (103)
T 1s79_A 85 FKD 87 (103)
T ss_dssp EHH
T ss_pred Ech
Confidence 864
No 68
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=5.4e-22 Score=111.22 Aligned_cols=85 Identities=38% Similarity=0.642 Sum_probs=79.1
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|+.. ++..+.|++|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 34556789999999999999999999999999999999999988899999999999999999999998 99999999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|.++.+
T Consensus 89 V~~a~~ 94 (105)
T 2dh8_A 89 PKPCTP 94 (105)
T ss_dssp CCCSCC
T ss_pred EEEccC
Confidence 999865
No 69
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=113.00 Aligned_cols=84 Identities=24% Similarity=0.404 Sum_probs=73.5
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecC-CCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDR-VTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l 98 (106)
.......++|||+|||.++++++|+++|+.|| |..+.+..+. .++.++|||||+|.+.++|++|+ .++|..+.|++|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 44556689999999999999999999999999 9999999887 57889999999999999999999 799999999999
Q ss_pred EEEeccC
Q 034021 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~s~~ 105 (106)
+|+++++
T Consensus 91 ~V~~a~~ 97 (100)
T 2j76_E 91 RVDVADQ 97 (100)
T ss_dssp CCEECCC
T ss_pred EEEeccC
Confidence 9999875
No 70
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.2e-21 Score=108.38 Aligned_cols=80 Identities=16% Similarity=0.266 Sum_probs=73.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 034021 23 ANSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l 98 (106)
....++|||+|||.++++++|+ ++|+.||.|..+.++.+..+ ++||||+|.+.++|++|+..|||..+.|++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456799999999999999999 99999999999999988744 7799999999999999999999999999999
Q ss_pred EEEeccC
Q 034021 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~s~~ 105 (106)
+|+++++
T Consensus 83 ~V~~a~~ 89 (96)
T 2dgx_A 83 LVSLATG 89 (96)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9999875
No 71
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.87 E-value=1.4e-22 Score=118.49 Aligned_cols=88 Identities=36% Similarity=0.596 Sum_probs=80.9
Q ss_pred ccccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 034021 18 RLLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 18 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~ 97 (106)
.........++|||+|||.++++++|+++|+.||.|..+.++.+..++..+|||||+|.+.++|++|+..|++..+.|++
T Consensus 39 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 118 (135)
T 2lea_A 39 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 118 (135)
T ss_dssp CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 33445556789999999999999999999999999999999998878899999999999999999999999999999999
Q ss_pred EEEEeccC
Q 034021 98 IRVNYAHK 105 (106)
Q Consensus 98 l~v~~s~~ 105 (106)
|+|+++++
T Consensus 119 l~V~~a~~ 126 (135)
T 2lea_A 119 LRVQMARY 126 (135)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 99999875
No 72
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=1.6e-21 Score=116.31 Aligned_cols=84 Identities=37% Similarity=0.623 Sum_probs=79.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|+..|+|..+.|++|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34457899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccC
Q 034021 102 YAHK 105 (106)
Q Consensus 102 ~s~~ 105 (106)
++++
T Consensus 146 ~a~~ 149 (158)
T 2kn4_A 146 MARY 149 (158)
T ss_dssp EECC
T ss_pred ECCC
Confidence 9875
No 73
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=6.9e-21 Score=106.34 Aligned_cols=84 Identities=29% Similarity=0.501 Sum_probs=77.0
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|+. ++..+.|++|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 3445567899999999999999999999999999999999998889999999999999999999999 57899999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|.++.+
T Consensus 87 v~~a~~ 92 (103)
T 2cqg_A 87 CKLPNS 92 (103)
T ss_dssp EECCCT
T ss_pred EEecCC
Confidence 999865
No 74
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=5.1e-21 Score=107.91 Aligned_cols=83 Identities=23% Similarity=0.428 Sum_probs=74.7
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
.......++|||+|||.++++++|+++|+.||.|..+.+..+ +.+++||||+|.+.++|++|+..|++..+.|++|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344556789999999999999999999999999999988543 44688999999999999999999999999999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|+++++
T Consensus 93 V~~a~~ 98 (109)
T 1x4a_A 93 VEFPRS 98 (109)
T ss_dssp EECCCC
T ss_pred EEEccc
Confidence 999875
No 75
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.4e-22 Score=109.62 Aligned_cols=82 Identities=27% Similarity=0.434 Sum_probs=76.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|+..|+|..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999999888999999999999999999999999999999999998876
Q ss_pred cC
Q 034021 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
..
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 76
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.87 E-value=1.6e-21 Score=112.25 Aligned_cols=80 Identities=25% Similarity=0.650 Sum_probs=76.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|+ .+++..+.|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999999999878999999999999999999999 799999999999999987
Q ss_pred C
Q 034021 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 5
No 77
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.9e-21 Score=108.72 Aligned_cols=84 Identities=21% Similarity=0.478 Sum_probs=77.8
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee-------
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL------- 93 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~------- 93 (106)
......++|||+|||.++++++|+++|+.||.|..+.++.+. ++..+|||||+|.+.++|++|+..|+|..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 344567899999999999999999999999999999999998 889999999999999999999999999999
Q ss_pred -CCeEEEEEeccC
Q 034021 94 -DGRNIRVNYAHK 105 (106)
Q Consensus 94 -~g~~l~v~~s~~ 105 (106)
.+++|.|.++++
T Consensus 99 ~~~~~l~v~~a~p 111 (114)
T 1x5o_A 99 APTEPLLCKFSGP 111 (114)
T ss_dssp CCSSCBEEEECCC
T ss_pred CCCCceeEEccCC
Confidence 578899999875
No 78
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.87 E-value=1.9e-22 Score=117.30 Aligned_cols=85 Identities=22% Similarity=0.427 Sum_probs=78.5
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeE--EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCc----ee
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGL----LL 93 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~----~~ 93 (106)
.......++|||+|||+++++++|+++|+.||.|.. +.+++++.++.++|||||+|.+. +|.+|+..|++. .+
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 344566789999999999999999999999999966 99999998999999999999999 999999999999 99
Q ss_pred CCeEEEEEeccC
Q 034021 94 DGRNIRVNYAHK 105 (106)
Q Consensus 94 ~g~~l~v~~s~~ 105 (106)
.|++|+|.++++
T Consensus 96 ~gr~l~V~~a~~ 107 (131)
T 2m2b_A 96 DGKTINVEFAKG 107 (131)
T ss_dssp GGCCCCCEECCC
T ss_pred CCEEEEEEECCC
Confidence 999999999865
No 79
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.87 E-value=3.5e-22 Score=105.76 Aligned_cols=75 Identities=29% Similarity=0.533 Sum_probs=71.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 28 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
+|||+|||.++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|++|+. +++..++|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999988788999999999999999999998 9999999999999875
No 80
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.87 E-value=3.9e-21 Score=115.58 Aligned_cols=84 Identities=25% Similarity=0.445 Sum_probs=78.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|+..|+|..+.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456889999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccC
Q 034021 102 YAHK 105 (106)
Q Consensus 102 ~s~~ 105 (106)
++.+
T Consensus 148 ~a~~ 151 (165)
T 1rk8_A 148 WCFV 151 (165)
T ss_dssp ESEE
T ss_pred EecC
Confidence 9864
No 81
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.8e-21 Score=110.19 Aligned_cols=84 Identities=19% Similarity=0.354 Sum_probs=76.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH---HHhccCCCeeEEEEeecCCCC---CceeEEEEEecCHHHHHHHHHHhCCceeCC
Q 034021 22 DANSRTKLFIGGLSYDTNETVLK---DAFGQHGEIIEVKVICDRVTG---QSRGYGFVKFASEAAAGEAIKEMDGLLLDG 95 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~---~~f~~~g~i~~~~~~~~~~~~---~~~g~~fv~f~~~~~a~~al~~l~~~~~~g 95 (106)
.....++|||+|||+++++++|+ ++|+.||.|..+.+..+..++ ..+|||||+|.+.++|++|+..||+..+.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 44457899999999999999999 999999999999998886543 456999999999999999999999999999
Q ss_pred eEEEEEeccC
Q 034021 96 RNIRVNYAHK 105 (106)
Q Consensus 96 ~~l~v~~s~~ 105 (106)
++|+|.++.+
T Consensus 91 r~l~V~~a~~ 100 (111)
T 2cpi_A 91 RTLKASLGTT 100 (111)
T ss_dssp EEEEEESCCC
T ss_pred EEEEEEeccc
Confidence 9999999875
No 82
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.87 E-value=2e-21 Score=111.18 Aligned_cols=82 Identities=22% Similarity=0.301 Sum_probs=75.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGE---IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l 98 (106)
.....++|||+|||+++++++|+++|+.||. |..+.++.+.. +.++|+|||+|.+.++|++|+. +++..++|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3456789999999999999999999999998 89999999884 8899999999999999999999 99999999999
Q ss_pred EEEeccC
Q 034021 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~s~~ 105 (106)
+|.++.+
T Consensus 91 ~V~~a~~ 97 (118)
T 2db1_A 91 EVFKSHR 97 (118)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9998764
No 83
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.5e-21 Score=109.99 Aligned_cols=82 Identities=26% Similarity=0.444 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEe-ecCCCCCceeEEEEEecCHHHHHHHHHHhC--CceeCCeEEE
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVI-CDRVTGQSRGYGFVKFASEAAAGEAIKEMD--GLLLDGRNIR 99 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-i~~~~~~-~~~~~~~~~g~~fv~f~~~~~a~~al~~l~--~~~~~g~~l~ 99 (106)
...++|||+|||.++++++|+++|+.||. |..+.++ .+..++..+|||||+|.+.++|++|+..|+ +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999988 677778899999999999999999999996 5899999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|.++++
T Consensus 86 V~~a~~ 91 (109)
T 2dis_A 86 VDWAEP 91 (109)
T ss_dssp EEESCS
T ss_pred EEEcCC
Confidence 999875
No 84
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=109.87 Aligned_cols=78 Identities=15% Similarity=0.263 Sum_probs=70.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhC--CceeCCeEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD--GLLLDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~--~~~~~g~~l~ 99 (106)
.+...++|||+|||+++++++|+++|++||.|..+.++++ +|||||+|.+.++|++|+..++ +..+.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456789999999999999999999999999999999864 5799999999999999999886 4789999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|.+|++
T Consensus 86 V~~A~~ 91 (105)
T 1sjq_A 86 IQFSNH 91 (105)
T ss_dssp BCCCSS
T ss_pred EEEcCC
Confidence 999875
No 85
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.86 E-value=1.8e-22 Score=110.23 Aligned_cols=78 Identities=36% Similarity=0.676 Sum_probs=73.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 034021 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~~ 105 (106)
++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.+ |++|+..|+|..++|++|+|++|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999888999999999999999 9999999999999999999999875
No 86
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=5.3e-22 Score=105.44 Aligned_cols=76 Identities=39% Similarity=0.672 Sum_probs=72.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..++ ..+.|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999988788999999999999999999999988 9999999999986
No 87
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.86 E-value=3.2e-21 Score=111.55 Aligned_cols=81 Identities=14% Similarity=0.370 Sum_probs=72.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~ 97 (106)
.....++|||+|||+.+++++|+ ++|++||.|..+.+.. ++..+|||||+|.+.++|..|+..|||..+.|++
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34457899999999999998866 6899999999887743 5678899999999999999999999999999999
Q ss_pred EEEEeccC
Q 034021 98 IRVNYAHK 105 (106)
Q Consensus 98 l~v~~s~~ 105 (106)
|+|.+|++
T Consensus 102 l~V~~a~~ 109 (127)
T 2a3j_A 102 LVITFSET 109 (127)
T ss_dssp CEEEECCC
T ss_pred EEEEEccC
Confidence 99999875
No 88
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=109.05 Aligned_cols=82 Identities=26% Similarity=0.388 Sum_probs=74.1
Q ss_pred CCCCCceEEEcCCCCCC------CHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC
Q 034021 22 DANSRTKLFIGGLSYDT------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG 95 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g 95 (106)
.....++|||+|||..+ ++++|+++|+.||.|..+.+++ .+|.++|||||+|.+.++|++|+..|+|..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 7899999999999999998873 478889999999999999999999999999999
Q ss_pred e-EEEEEeccC
Q 034021 96 R-NIRVNYAHK 105 (106)
Q Consensus 96 ~-~l~v~~s~~ 105 (106)
+ +|+|.++..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 8 999999853
No 89
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.2e-21 Score=110.34 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=76.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCe-eEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEI-IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
..+...++|||+|||+++++++|+++|+.||.| ..+.++.+. ++..+|||||+|.+.++|++|+.. ++..+.|++|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 345567899999999999999999999999999 889999988 899999999999999999999996 99999999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|.++.+
T Consensus 88 v~~a~~ 93 (114)
T 2cpy_A 88 VHVVTL 93 (114)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999864
No 90
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.8e-21 Score=107.71 Aligned_cols=83 Identities=22% Similarity=0.330 Sum_probs=75.4
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
......++|||+|||+++++++|+++|+.||.|.. +.++.+ .++.++|+|||+|.+.++|++|+.. ++..++|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 34456789999999999999999999999999987 888887 5899999999999999999999997 99999999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|.++.+
T Consensus 88 v~~~~~ 93 (104)
T 1wg5_A 88 IFKSSR 93 (104)
T ss_dssp EEEECT
T ss_pred EEECCH
Confidence 998765
No 91
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.7e-21 Score=109.57 Aligned_cols=80 Identities=36% Similarity=0.599 Sum_probs=75.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.++.++.++..+|||||+|.+.++|++|+.. ++..+.|++|+|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 358999999999999999999999999999999999987899999999999999999999997 9999999999999986
Q ss_pred C
Q 034021 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 105 ~ 105 (116)
T 1x4b_A 105 A 105 (116)
T ss_dssp S
T ss_pred C
Confidence 5
No 92
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.86 E-value=2.2e-21 Score=113.43 Aligned_cols=83 Identities=22% Similarity=0.290 Sum_probs=76.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGE---IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~ 97 (106)
......++|||+|||+++++++|+++|+.||. |..+.++.++. +.++|+|||+|.+.++|++|+. +++..++|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34456789999999999999999999999998 88999999985 9999999999999999999999 9999999999
Q ss_pred EEEEeccC
Q 034021 98 IRVNYAHK 105 (106)
Q Consensus 98 l~v~~s~~ 105 (106)
|+|.++.+
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99998764
No 93
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.86 E-value=1.1e-20 Score=104.71 Aligned_cols=82 Identities=18% Similarity=0.402 Sum_probs=70.5
Q ss_pred ccccccCCCCCceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 034021 16 FTRLLSDANSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 16 ~~~~~~~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~ 94 (106)
...........++|||+|||. ++++++|+++|+.||.|..+.+. +|||||+|.+.++|++|+..++|..+.
T Consensus 12 ~~~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 12 SGLVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp -------CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred cccccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 334455666789999999998 99999999999999999999883 579999999999999999999999999
Q ss_pred CeEEEEEeccC
Q 034021 95 GRNIRVNYAHK 105 (106)
Q Consensus 95 g~~l~v~~s~~ 105 (106)
|++|+|+++++
T Consensus 84 g~~l~V~~a~~ 94 (97)
T 2xnq_A 84 GKKLILEVSSS 94 (97)
T ss_dssp TEECEEEECCC
T ss_pred CEEEEEEecCC
Confidence 99999999875
No 94
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.86 E-value=6.7e-21 Score=105.78 Aligned_cols=79 Identities=23% Similarity=0.263 Sum_probs=70.3
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCce--eCCeEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL--LDGRNI 98 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~--~~g~~l 98 (106)
....+.++|||+|||.++++++|+++|++||.|..+.+++. +|+|||+|.+.++|.+|+..+++.. +.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34456789999999999999999999999999999988743 5799999999999999999998875 889999
Q ss_pred EEEeccC
Q 034021 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~s~~ 105 (106)
+|++|+.
T Consensus 90 ~V~~S~~ 96 (100)
T 3r27_A 90 FVNYSTS 96 (100)
T ss_dssp EEEECSC
T ss_pred EEEeccc
Confidence 9999975
No 95
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1e-21 Score=113.15 Aligned_cols=84 Identities=23% Similarity=0.323 Sum_probs=75.4
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||+++++++|+++|+.||.|..+.++.+..++..+|||||+|.+.++|++|+. +++..++|++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 345567899999999999999999999999999875556666689999999999999999999999 9999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++.+
T Consensus 99 ~~a~~ 103 (124)
T 1wel_A 99 HPITK 103 (124)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99864
No 96
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=9.3e-21 Score=105.46 Aligned_cols=80 Identities=31% Similarity=0.496 Sum_probs=72.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.| .++.+ .++..+|+|||+|.+.++|++|+..|++..+.|++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45568999999999999999999999999987 45555 478889999999999999999999999999999999999
Q ss_pred eccC
Q 034021 102 YAHK 105 (106)
Q Consensus 102 ~s~~ 105 (106)
++++
T Consensus 87 ~a~~ 90 (101)
T 2fc9_A 87 LQGP 90 (101)
T ss_dssp ECSS
T ss_pred EcCC
Confidence 9875
No 97
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.85 E-value=6.9e-21 Score=107.39 Aligned_cols=79 Identities=30% Similarity=0.561 Sum_probs=70.9
Q ss_pred cccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 034021 19 LLSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 19 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l 98 (106)
....+...++|||+|||.++++++|+++|+.||.|..+.+. +|||||+|.+.++|++|+..|+|..+.|+.|
T Consensus 24 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (108)
T 2jvo_A 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPL 95 (108)
T ss_dssp ----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34556678999999999999999999999999999999886 4799999999999999999999999999999
Q ss_pred EEEeccC
Q 034021 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~s~~ 105 (106)
+|.++++
T Consensus 96 ~V~~a~~ 102 (108)
T 2jvo_A 96 EVVYSKL 102 (108)
T ss_dssp EEESCSC
T ss_pred EEEEecC
Confidence 9999875
No 98
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.4e-20 Score=111.12 Aligned_cols=84 Identities=37% Similarity=0.673 Sum_probs=79.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|+|..++|++|+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccC
Q 034021 102 YAHK 105 (106)
Q Consensus 102 ~s~~ 105 (106)
+|++
T Consensus 163 ~a~~ 166 (166)
T 3md3_A 163 WAAK 166 (166)
T ss_dssp ESCC
T ss_pred ecCC
Confidence 9975
No 99
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.9e-20 Score=104.29 Aligned_cols=82 Identities=35% Similarity=0.627 Sum_probs=74.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||.++++++|+++|+.|+ .+.++.+..++.++|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4455678999999999999999999999774 5667777778889999999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
+++++
T Consensus 87 ~~a~~ 91 (102)
T 2fc8_A 87 DWAKP 91 (102)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99875
No 100
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2e-20 Score=104.34 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=69.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh--CCceeCCeEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM--DGLLLDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l--~~~~~~g~~l~ 99 (106)
.....++|||+|||+++++++|+++|+.||.|..+.++.+ +|+|||+|.+.++|++|+..+ ++..+.|++|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3345689999999999999999999999999999988754 579999999999999999976 46789999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|.++++
T Consensus 85 V~~a~~ 90 (101)
T 2cq1_A 85 IQYSNH 90 (101)
T ss_dssp EEECSC
T ss_pred EEEcCc
Confidence 999875
No 101
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.3e-21 Score=106.57 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=74.4
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||+++++++|+++|+.||. ..+.++.++ ++.++|+|||+|.+.++|++|+. +++..++++.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVEL 86 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 34556789999999999999999999999994 499999998 89999999999999999999996 7999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++.+
T Consensus 87 ~~~~~ 91 (102)
T 1wez_A 87 FLNST 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 98764
No 102
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.85 E-value=3.4e-21 Score=121.28 Aligned_cols=81 Identities=32% Similarity=0.505 Sum_probs=76.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHG--EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 102 (106)
..++|||+|||+++++++|+++|+.|| .|..+.|+.++.++.++|||||+|.+.++|++||..|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999988999999999999999999999999999999999999999
Q ss_pred ccC
Q 034021 103 AHK 105 (106)
Q Consensus 103 s~~ 105 (106)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 753
No 103
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=101.54 Aligned_cols=78 Identities=31% Similarity=0.563 Sum_probs=71.4
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh-CCceeCCeEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM-DGLLLDGRNIR 99 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l-~~~~~~g~~l~ 99 (106)
..+...++|||+|||.++++++|+++|+.||.|..+.+.++ +|+|||+|.+.++|++|+..| ++..+.|++|+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 34556789999999999999999999999999999998864 579999999999999999998 99999999999
Q ss_pred EEecc
Q 034021 100 VNYAH 104 (106)
Q Consensus 100 v~~s~ 104 (106)
|++++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 104
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.1e-20 Score=105.29 Aligned_cols=76 Identities=24% Similarity=0.360 Sum_probs=70.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC-----eE
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG-----RN 97 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g-----~~ 97 (106)
....++|||+|||+++++++|+++|+.||.|..+.++.+ |||||+|.+.++|++|+..|++..+.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456789999999999999999999999999999999765 699999999999999999999999999 99
Q ss_pred EEEEeccC
Q 034021 98 IRVNYAHK 105 (106)
Q Consensus 98 l~v~~s~~ 105 (106)
|+|.++++
T Consensus 85 i~V~~a~~ 92 (108)
T 1x4c_A 85 IRVKVDGP 92 (108)
T ss_dssp EEEEESSC
T ss_pred EEEEeCCC
Confidence 99999875
No 105
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.85 E-value=2.2e-20 Score=116.21 Aligned_cols=82 Identities=28% Similarity=0.555 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
...++|||+|||+++++++|+++|+.||.|..+.++++..++.++|||||+|.+.++|++|+..+++..+.|+.+++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 35679999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred cC
Q 034021 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
..
T Consensus 93 ~~ 94 (213)
T 4f02_A 93 QR 94 (213)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 106
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=7.5e-21 Score=107.40 Aligned_cols=80 Identities=24% Similarity=0.374 Sum_probs=72.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 102 (106)
....++|||+|||+++++++|+++|+.| .|..+.++.++ +|..+|+|||+|.+.++|++|+ .+++..++|+.|.|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3345799999999999999999999999 89999999987 4889999999999999999999 5899999999999988
Q ss_pred ccC
Q 034021 103 AHK 105 (106)
Q Consensus 103 s~~ 105 (106)
+.+
T Consensus 90 a~~ 92 (109)
T 2dnn_A 90 ATE 92 (109)
T ss_dssp CCH
T ss_pred CCc
Confidence 753
No 107
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.85 E-value=3.8e-21 Score=106.23 Aligned_cols=82 Identities=26% Similarity=0.506 Sum_probs=73.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~ 97 (106)
.....++|||+|||.++++++|+ ++|+.||.|..+.+.. ++.++|+|||+|.+.++|++|+..|+|..+.|++
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34567899999999999999999 9999999999998863 4556789999999999999999999999999999
Q ss_pred EEEEeccCC
Q 034021 98 IRVNYAHKD 106 (106)
Q Consensus 98 l~v~~s~~~ 106 (106)
|+|.+++++
T Consensus 81 l~v~~a~~~ 89 (97)
T 1nu4_A 81 MRIQYAKTD 89 (97)
T ss_dssp CEEEECSSC
T ss_pred EEEEEccCC
Confidence 999998763
No 108
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.3e-20 Score=103.21 Aligned_cols=79 Identities=29% Similarity=0.546 Sum_probs=71.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC--CeEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD--GRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~--g~~l~ 99 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..+ +++|||+|.+.++|++|+..|++..+. |++|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3445689999999999999999999999999999988643 579999999999999999999999999 99999
Q ss_pred EEeccCC
Q 034021 100 VNYAHKD 106 (106)
Q Consensus 100 v~~s~~~ 106 (106)
|+++++.
T Consensus 87 V~~a~~~ 93 (97)
T 1why_A 87 VDFAKSG 93 (97)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998763
No 109
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.8e-21 Score=108.23 Aligned_cols=78 Identities=15% Similarity=0.266 Sum_probs=70.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCC--ceeCCeEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LLLDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~--~~~~g~~l~ 99 (106)
.....++|||+|||+++++++|+++|++||.|..+.++.+ +|+|||+|.+.++|++|+..+++ ..+.|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3445789999999999999999999999999999998865 57999999999999999998874 689999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|.+|++
T Consensus 101 V~~a~~ 106 (119)
T 2ad9_A 101 IQFSNH 106 (119)
T ss_dssp EEECSS
T ss_pred EEEccC
Confidence 999875
No 110
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=102.50 Aligned_cols=75 Identities=33% Similarity=0.624 Sum_probs=69.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 102 (106)
....++|||+|||.++++++|+++|+.||.|..+.+. +++|||+|.+.++|++|+..|++..+.|++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999886 46999999999999999999999999999999999
Q ss_pred ccC
Q 034021 103 AHK 105 (106)
Q Consensus 103 s~~ 105 (106)
+++
T Consensus 77 a~~ 79 (90)
T 2dnq_A 77 SKN 79 (90)
T ss_dssp SSC
T ss_pred CCC
Confidence 865
No 111
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=106.21 Aligned_cols=80 Identities=21% Similarity=0.615 Sum_probs=73.4
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+..+ +|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 93 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 93 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 35556789999999999999999999999999999998765 579999999999999999999999999999999
Q ss_pred EeccCC
Q 034021 101 NYAHKD 106 (106)
Q Consensus 101 ~~s~~~ 106 (106)
.++++.
T Consensus 94 ~~a~~~ 99 (109)
T 1x4g_A 94 YWGKES 99 (109)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998763
No 112
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.85 E-value=7.5e-21 Score=107.70 Aligned_cols=80 Identities=21% Similarity=0.225 Sum_probs=71.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
.+...++|||+|||+++++++|+++|+.|| .|..+.+... ..+|||||+|.+.++|++|+..|||..+.|++|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 455678999999999999999999999999 8999888533 35789999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
+++..
T Consensus 100 ~~a~~ 104 (111)
T 2jvr_A 100 ERDDN 104 (111)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 99864
No 113
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=5.7e-21 Score=106.66 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=69.3
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCC--ceeCCeEEE
Q 034021 23 ANSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LLLDGRNIR 99 (106)
Q Consensus 23 ~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~--~~~~g~~l~ 99 (106)
....++|||+|||+ ++++++|+++|++||.|..+.++++ +++|||+|.+.++|++|+..|++ ..+.|++|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34578999999999 9999999999999999999998765 36999999999999999998885 459999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|.+|++
T Consensus 86 V~~a~~ 91 (102)
T 1x4d_A 86 VHLSQK 91 (102)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 999874
No 114
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.85 E-value=1.4e-20 Score=106.95 Aligned_cols=80 Identities=24% Similarity=0.421 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 102 (106)
+...++|||+|||.++++++|+++|+.||.|..+.++.+ +..+|+|||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 446789999999999999999999999999999999865 34578999999999999999999999999999999999
Q ss_pred ccC
Q 034021 103 AHK 105 (106)
Q Consensus 103 s~~ 105 (106)
+.+
T Consensus 82 a~~ 84 (115)
T 3lqv_A 82 YNA 84 (115)
T ss_dssp CCH
T ss_pred ecC
Confidence 864
No 115
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.85 E-value=4e-20 Score=110.30 Aligned_cols=80 Identities=36% Similarity=0.658 Sum_probs=76.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 034021 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~~ 105 (106)
.++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..+++..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999988899999999999999999999999999999999999999864
No 116
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.4e-20 Score=101.16 Aligned_cols=77 Identities=27% Similarity=0.494 Sum_probs=70.9
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+.+.+ ++|||+|.+.++|++|+..|++..+.|++|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 4455678999999999999999999999999999998863 39999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
+++++
T Consensus 77 ~~a~~ 81 (92)
T 2dgt_A 77 QLSTS 81 (92)
T ss_dssp EESSC
T ss_pred EEccC
Confidence 99875
No 117
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.84 E-value=2e-21 Score=109.39 Aligned_cols=83 Identities=14% Similarity=0.244 Sum_probs=76.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGE---IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~ 97 (106)
......++|||+|||+++++++|+++|+.||. |..+.++.+.. |.++|+|||+|.+.++|++|+. +++..++|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34556889999999999999999999999988 89999998885 8899999999999999999999 9999999999
Q ss_pred EEEEeccC
Q 034021 98 IRVNYAHK 105 (106)
Q Consensus 98 l~v~~s~~ 105 (106)
|+|.++.+
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99998764
No 118
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=103.57 Aligned_cols=80 Identities=25% Similarity=0.431 Sum_probs=71.0
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|. +.++.+ ..+|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3445678999999999999999999999999986 556544 35789999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++++
T Consensus 89 ~~a~~ 93 (97)
T 2e5j_A 89 ALARQ 93 (97)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99875
No 119
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=104.52 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=68.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCC--ceeCCeEEEE
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG--LLLDGRNIRV 100 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~--~~~~g~~l~v 100 (106)
....++|||+|||+++++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+..|++ ..+.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345689999999999999999999999999999988753 57999999999999999998865 4599999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++++
T Consensus 86 ~~a~~ 90 (104)
T 1wex_A 86 NYSTS 90 (104)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99875
No 120
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.3e-20 Score=104.87 Aligned_cols=79 Identities=24% Similarity=0.412 Sum_probs=72.0
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
..+...++|||+|||.++++++|+++|+.||.|..+.+.. .+|||||+|.+.++|.+|+..|++..+.|++|+|
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445578999999999999999999999999999998873 3579999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++++
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 99876
No 121
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.84 E-value=2.9e-20 Score=111.17 Aligned_cols=81 Identities=33% Similarity=0.531 Sum_probs=77.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~ 104 (106)
+.++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..+++..+.|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46789999999999999999999999999999999998888899999999999999999999999999999999999987
Q ss_pred C
Q 034021 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 82 ~ 82 (168)
T 1b7f_A 82 P 82 (168)
T ss_dssp C
T ss_pred C
Confidence 5
No 122
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=4.6e-20 Score=100.71 Aligned_cols=76 Identities=30% Similarity=0.550 Sum_probs=70.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+.+ ++|||+|.+.++|++|+..|++..+.|++|+|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 455678999999999999999999999999999998863 389999999999999999999999999999999
Q ss_pred eccC
Q 034021 102 YAHK 105 (106)
Q Consensus 102 ~s~~ 105 (106)
++++
T Consensus 77 ~a~~ 80 (90)
T 2dnp_A 77 LSTK 80 (90)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9875
No 123
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.84 E-value=2.5e-20 Score=100.71 Aligned_cols=74 Identities=16% Similarity=0.294 Sum_probs=68.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~ 104 (106)
...-|||+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.+.++|.+|++.||+..++|+.|+|.+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356799999999999999999999999999998865 46899999999999999999999999999999999875
No 124
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.84 E-value=2.3e-21 Score=102.51 Aligned_cols=75 Identities=28% Similarity=0.495 Sum_probs=70.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 28 KLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 28 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
+|||+|||.++++++|+++|+.||.|..+.++.++.++.++|+|||+|.+.++|++|+. +++..+.|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999988788999999999999999999999 4899999999999875
No 125
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.84 E-value=1e-21 Score=109.37 Aligned_cols=82 Identities=26% Similarity=0.415 Sum_probs=73.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|++|+. |++..+.|++|+|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3446789999999999999999999999998876 555665567789999999999999999999 99999999999999
Q ss_pred eccC
Q 034021 102 YAHK 105 (106)
Q Consensus 102 ~s~~ 105 (106)
++++
T Consensus 91 ~a~~ 94 (101)
T 1fj7_A 91 KPKG 94 (101)
T ss_dssp CCSC
T ss_pred EcCC
Confidence 9865
No 126
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.84 E-value=5.1e-21 Score=102.70 Aligned_cols=73 Identities=27% Similarity=0.437 Sum_probs=66.9
Q ss_pred CceEEEcCCCCCC------CHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCe-EE
Q 034021 26 RTKLFIGGLSYDT------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR-NI 98 (106)
Q Consensus 26 ~~~l~v~~lp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~-~l 98 (106)
.++|||+|||.++ ++++|+++|++||.|..+.+.+ .+|.++|||||+|.+.++|++|+..|+|..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 7799999999999999998873 4788899999999999999999999999999999 88
Q ss_pred EE
Q 034021 99 RV 100 (106)
Q Consensus 99 ~v 100 (106)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 127
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.2e-20 Score=102.98 Aligned_cols=78 Identities=31% Similarity=0.571 Sum_probs=71.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..+ +|||||+|.+.++|++|+..|++..+.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456789999999999999999999999999999988754 5799999999999999999999999999999999
Q ss_pred eccC
Q 034021 102 YAHK 105 (106)
Q Consensus 102 ~s~~ 105 (106)
++++
T Consensus 85 ~a~~ 88 (99)
T 2cpj_A 85 FACH 88 (99)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 9875
No 128
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.5e-21 Score=109.43 Aligned_cols=80 Identities=24% Similarity=0.448 Sum_probs=71.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCe----eEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEI----IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~ 97 (106)
.....++|||+|||.++++++|+++|+.||.| ..+.+. ++..+|||||+|.+.++|++|+..|++..+.|++
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 34457899999999999999999999999988 444443 6778899999999999999999999999999999
Q ss_pred EEEEeccC
Q 034021 98 IRVNYAHK 105 (106)
Q Consensus 98 l~v~~s~~ 105 (106)
|+|.++++
T Consensus 97 l~v~~a~~ 104 (115)
T 2cpx_A 97 LVIEFGKN 104 (115)
T ss_dssp CEEEECCC
T ss_pred EEEEEccC
Confidence 99999875
No 129
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.83 E-value=5e-20 Score=104.01 Aligned_cols=76 Identities=25% Similarity=0.524 Sum_probs=69.5
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 22 DANSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
.....++|||+|||.+ +++++|+++|+.||.|..+.+ .++||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3344689999999999 999999999999999999988 3579999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
+++++
T Consensus 95 ~~a~~ 99 (110)
T 1wf1_A 95 NMAGE 99 (110)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 99863
No 130
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=106.18 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=69.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.+.. .+++|||+|.+.++|++|+..|||..+.|++|+|+++
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3467999999999999999999999999999998764 3579999999999999999999999999999999998
Q ss_pred cC
Q 034021 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
..
T Consensus 82 ~~ 83 (111)
T 1whx_A 82 PI 83 (111)
T ss_dssp ET
T ss_pred CC
Confidence 65
No 131
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=2.7e-20 Score=102.67 Aligned_cols=80 Identities=30% Similarity=0.516 Sum_probs=71.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||.++++++|+++|+.||.|..+ ..++..+|+|||+|.+.++|++|+..|++..+.|++|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999988766 236778999999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++.+
T Consensus 86 ~~a~~ 90 (96)
T 1fjc_A 86 YYTGE 90 (96)
T ss_dssp EECSS
T ss_pred EEcCC
Confidence 99864
No 132
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.83 E-value=8.1e-20 Score=102.02 Aligned_cols=75 Identities=32% Similarity=0.581 Sum_probs=69.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 102 (106)
....++|||+|||.++++++|+++|+.||.|..+.+. ++||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456899999999999999999999999999999886 34999999999999999999999999999999999
Q ss_pred ccC
Q 034021 103 AHK 105 (106)
Q Consensus 103 s~~ 105 (106)
+++
T Consensus 80 a~~ 82 (103)
T 2dgu_A 80 AKP 82 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 865
No 133
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.83 E-value=9.3e-20 Score=109.39 Aligned_cols=82 Identities=28% Similarity=0.513 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 102 (106)
....++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|+|..++|++|+|++
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34578999999999999999999999999999999999987899999999999999999999999999999999999999
Q ss_pred cc
Q 034021 103 AH 104 (106)
Q Consensus 103 s~ 104 (106)
|.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 134
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2e-19 Score=99.77 Aligned_cols=77 Identities=34% Similarity=0.559 Sum_probs=69.8
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccC--CCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQH--GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l 98 (106)
......++|||+|||.++++++|+++|+.| |.|..+.+. ++||||+|.+.++|++|+..|++..+.|++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344467899999999999999999999999 889888764 4699999999999999999999999999999
Q ss_pred EEEeccC
Q 034021 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~s~~ 105 (106)
+|.++++
T Consensus 82 ~v~~a~~ 88 (99)
T 2cpd_A 82 EVTLAKP 88 (99)
T ss_dssp EEECCCC
T ss_pred EEEECCC
Confidence 9999875
No 135
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.83 E-value=3.5e-20 Score=112.66 Aligned_cols=81 Identities=27% Similarity=0.499 Sum_probs=76.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..+. ++..+|+|||+|.+.++|++|+..+++..+.|+.|+|+++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 446899999999999999999999999999999999988 8889999999999999999999999999999999999998
Q ss_pred cC
Q 034021 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
..
T Consensus 165 ~~ 166 (177)
T 2f3j_A 165 AS 166 (177)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 136
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=104.73 Aligned_cols=74 Identities=26% Similarity=0.513 Sum_probs=69.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 034021 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~~ 105 (106)
++|||+|||.++++++|+++|+.||.|..+.+..+ .+|+|||+|.+.++|++|+..|++..+.|++|+|+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 47999999999999999999999999999999876 468999999999999999999999999999999999865
No 137
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.83 E-value=1.3e-20 Score=105.09 Aligned_cols=78 Identities=31% Similarity=0.622 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.++.+. ++..+|||||+|.+.++|++|+. ++..+.|++|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 356899999999999999999999999999999999998 89999999999999999999999 899999999999886
Q ss_pred c
Q 034021 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
.
T Consensus 84 ~ 84 (102)
T 2xs2_A 84 I 84 (102)
T ss_dssp E
T ss_pred C
Confidence 5
No 138
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=5.1e-20 Score=109.06 Aligned_cols=81 Identities=31% Similarity=0.527 Sum_probs=74.1
Q ss_pred ccCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 20 LSDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 20 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
.......++|||+|||+++++++|+++|+.||.|..+.++.+ ++|||||+|.+.++|.+|+..|+|..+.|++|+
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344556799999999999999999999999999999999876 368999999999999999999999999999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|+++++
T Consensus 142 v~~a~~ 147 (150)
T 2i2y_A 142 VELSNG 147 (150)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 999876
No 139
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=4.1e-22 Score=113.57 Aligned_cols=83 Identities=29% Similarity=0.464 Sum_probs=77.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIE--------VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~ 94 (106)
....++|||+|||.++++++|+++|+.||.|.. +.++.++.++..+|||||+|.+.++|++|+..|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 446789999999999999999999999999988 888888778889999999999999999999999999999
Q ss_pred CeEEEEEeccC
Q 034021 95 GRNIRVNYAHK 105 (106)
Q Consensus 95 g~~l~v~~s~~ 105 (106)
|++|+|.++++
T Consensus 84 g~~l~V~~a~~ 94 (116)
T 2lcw_A 84 GNPIKVSFATR 94 (116)
Confidence 99999999865
No 140
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.83 E-value=7.6e-20 Score=99.52 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=69.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
...++|||+|||+++++++|+++|+.| .|..+.+. ..+|+|||+|.+.++|++|+..+++..+.|++|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 356789999999999999999999999 89988884 35789999999999999999999999999999999998
Q ss_pred cCC
Q 034021 104 HKD 106 (106)
Q Consensus 104 ~~~ 106 (106)
..+
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 141
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.82 E-value=1.7e-19 Score=110.40 Aligned_cols=83 Identities=29% Similarity=0.525 Sum_probs=78.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|+|..++|++|+|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56799999999999999999999999999999999999878999999999999999999999999999999999999998
Q ss_pred cCC
Q 034021 104 HKD 106 (106)
Q Consensus 104 ~~~ 106 (106)
++.
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 142
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7e-20 Score=101.00 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEE-EEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~ 101 (106)
....++|||+|||.++++++|+++|+.||.|..+ .++.++.+ +.|||+|.+.++|++|+..|++..+.|++|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999 47776533 339999999999999999999999999999999
Q ss_pred eccCC
Q 034021 102 YAHKD 106 (106)
Q Consensus 102 ~s~~~ 106 (106)
++.+.
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 98763
No 143
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.82 E-value=1.8e-19 Score=111.56 Aligned_cols=82 Identities=23% Similarity=0.502 Sum_probs=77.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|++..++|++|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred cC
Q 034021 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 203 ~~ 204 (216)
T 2qfj_A 203 VT 204 (216)
T ss_dssp SS
T ss_pred cC
Confidence 65
No 144
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=4.6e-20 Score=101.89 Aligned_cols=76 Identities=20% Similarity=0.447 Sum_probs=68.6
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 22 DANSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
.....++|||+|||. ++++++|+++|+.||.|..+.+. +|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999998 99999999999999999999883 569999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
+++++
T Consensus 78 ~~a~~ 82 (96)
T 2kvi_A 78 EVSSS 82 (96)
T ss_dssp EEEEC
T ss_pred EEcCc
Confidence 99864
No 145
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.8e-20 Score=103.73 Aligned_cols=78 Identities=13% Similarity=0.235 Sum_probs=69.4
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhC--CceeCCeEE
Q 034021 22 DANSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD--GLLLDGRNI 98 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~--~~~~~g~~l 98 (106)
.....++|||+|||++ +++++|+++|++||.|..+.+++. +|+|||+|.+.++|++|+..|+ +..+.|++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3456789999999998 999999999999999999998643 5799999999999999999885 456999999
Q ss_pred EEEeccC
Q 034021 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~s~~ 105 (106)
+|.+|++
T Consensus 95 ~V~~a~~ 101 (112)
T 1x4f_A 95 KVDLSEK 101 (112)
T ss_dssp EEEEECS
T ss_pred EEEECcc
Confidence 9999875
No 146
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.82 E-value=1.9e-19 Score=109.99 Aligned_cols=84 Identities=33% Similarity=0.571 Sum_probs=77.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
..+...++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|+.. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3455678999999999999999999999999999999999988899999999999999999999985 999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++..
T Consensus 87 ~~~~~ 91 (196)
T 1l3k_A 87 KRAVS 91 (196)
T ss_dssp EECCC
T ss_pred ecccC
Confidence 98753
No 147
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=106.97 Aligned_cols=81 Identities=25% Similarity=0.349 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCe----eEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEI----IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l 98 (106)
....++|||+|||+++++++|+++|+.||.| ..+.++.+. ++.++|+|||+|.+.++|++|+.. ++..++++.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3457899999999999999999999999875 688888885 899999999999999999999995 9999999999
Q ss_pred EEEeccC
Q 034021 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~s~~ 105 (106)
+|..+.+
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988753
No 148
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.82 E-value=1.7e-19 Score=122.44 Aligned_cols=82 Identities=29% Similarity=0.587 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
...++|||+|||..+++++|.++|+.||.|..|.|+.+..++..+|||||+|.+.++|++||..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred cC
Q 034021 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 180 ~~ 181 (437)
T 3pgw_S 180 RG 181 (437)
T ss_pred CC
Confidence 64
No 149
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.2e-20 Score=100.70 Aligned_cols=76 Identities=28% Similarity=0.508 Sum_probs=67.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCC-ceeCCeEEEE
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGE-IIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG-LLLDGRNIRV 100 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~-~~~~g~~l~v 100 (106)
....++|||+|||.++++++|+++|+.||. +..+.+. .+|||||+|.+.++|++|+..|++ ..+.|++|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 345689999999999999999999999999 6655552 357999999999999999999999 9999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++++
T Consensus 78 ~~a~~ 82 (93)
T 2cqh_A 78 DYSVS 82 (93)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99875
No 150
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.9e-20 Score=110.13 Aligned_cols=83 Identities=24% Similarity=0.434 Sum_probs=71.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEE------EEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEV------KVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG 95 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~------~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g 95 (106)
.....++|||+|||.++++++|+++|+.||.|..+ .+.. ..++.++|||||+|.+.++|.+|+..|||..+.|
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRL-MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEE-EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEe-ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 34567899999999999999999999999988653 1111 1267789999999999999999999999999999
Q ss_pred eEEEEEeccC
Q 034021 96 RNIRVNYAHK 105 (106)
Q Consensus 96 ~~l~v~~s~~ 105 (106)
+.|+|.++++
T Consensus 120 ~~l~V~~a~~ 129 (143)
T 3egn_A 120 KPMVVQFARS 129 (143)
T ss_dssp EECEEEECCC
T ss_pred cEEEEEECCC
Confidence 9999999864
No 151
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.2e-19 Score=104.24 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=70.5
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecC----HHH----HHHHHH--HhCCce
Q 034021 27 TKLFIGGL----SYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFAS----EAA----AGEAIK--EMDGLL 92 (106)
Q Consensus 27 ~~l~v~~l----p~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~----~~~----a~~al~--~l~~~~ 92 (106)
..|||+|| |+.+++.+|+.+|+.||.|..+.++.|+.+|.++|||||+|.+ ..+ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 322 788888 789999
Q ss_pred eCCeEEEEEecc
Q 034021 93 LDGRNIRVNYAH 104 (106)
Q Consensus 93 ~~g~~l~v~~s~ 104 (106)
|+|++|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999754
No 152
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.82 E-value=4.1e-20 Score=106.69 Aligned_cols=82 Identities=23% Similarity=0.331 Sum_probs=73.2
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCee--EEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEII--EVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~--~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l 98 (106)
......++|||+|||+++++++|+++|+.| .|. .+.++.++. |.++|||||+|.+.++|++|+. +++..++|+.|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I 113 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYI 113 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEE
Confidence 344567899999999999999999999999 576 899998885 8899999999999999999999 47899999999
Q ss_pred EEEeccC
Q 034021 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~s~~ 105 (106)
+|.++.+
T Consensus 114 ~V~~a~~ 120 (126)
T 2hgm_A 114 EVFKSSQ 120 (126)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9998764
No 153
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.81 E-value=9.2e-21 Score=111.14 Aligned_cols=82 Identities=20% Similarity=0.273 Sum_probs=72.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|||+++++++|+++|+.|| +..+.++.++ ++.++|||||+|.+.++|++|+ .+++..++|+.|+|
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 3445678999999999999999999999999 7799999887 4889999999999999999999 68999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++.+
T Consensus 118 ~~a~~ 122 (139)
T 2hgn_A 118 FLNST 122 (139)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 98764
No 154
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.81 E-value=4.8e-19 Score=105.81 Aligned_cols=82 Identities=27% Similarity=0.575 Sum_probs=76.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC--eEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG--RNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g--~~l~ 99 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+.++..++.++|+|||+|.+.++|.+|+..|+|..+.| ++|+
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999999999977 9999
Q ss_pred EEec
Q 034021 100 VNYA 103 (106)
Q Consensus 100 v~~s 103 (106)
|.+|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 155
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.81 E-value=2.5e-19 Score=107.15 Aligned_cols=79 Identities=15% Similarity=0.346 Sum_probs=70.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC--eEEEE
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG--RNIRV 100 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g--~~l~v 100 (106)
+....+|||+||++.+++++|+++|++||.|..+.+..+. .+++|||+|.+.++|++|++.|+|..|.| ++|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 4445678999999999999999999999999999986543 46799999999999999999999999965 99999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
++|++
T Consensus 119 ~~Ak~ 123 (164)
T 1sjr_A 119 DFSKL 123 (164)
T ss_dssp EECSS
T ss_pred EEecC
Confidence 99875
No 156
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.4e-19 Score=106.79 Aligned_cols=78 Identities=24% Similarity=0.544 Sum_probs=72.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEeccC
Q 034021 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~~ 105 (106)
++|||+|||.++++++|+++|+.||.|..+.+..++ ++.++|+|||+|.+.++|++|+..+++..+.|+.|+|.++.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 589999999999999999999999999999999887 577899999999999999999999999999999999998754
No 157
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.81 E-value=4.8e-19 Score=102.46 Aligned_cols=79 Identities=15% Similarity=0.384 Sum_probs=69.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeE-EEEEecCHHHHHHHHHHhCCceeCC--eEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGY-GFVKFASEAAAGEAIKEMDGLLLDG--RNI 98 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~al~~l~~~~~~g--~~l 98 (106)
.+..-..|||+||++.+++++|+++|++||.|..+.+.... +|+ |||+|.+.++|++|++.|||..+.| +.|
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 34445678899999999999999999999999999887643 466 9999999999999999999999988 899
Q ss_pred EEEeccC
Q 034021 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~s~~ 105 (106)
+|++|++
T Consensus 99 rI~~ak~ 105 (130)
T 3zzy_A 99 RIDFSKL 105 (130)
T ss_dssp EEEECSC
T ss_pred EEEecCC
Confidence 9999976
No 158
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.3e-19 Score=98.05 Aligned_cols=76 Identities=18% Similarity=0.364 Sum_probs=67.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
...++|||+|||.++++++|+++|+.||.|..+ +.+..++. ||||+|.+.++|++|+. +++..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 346799999999999999999999999999987 44444444 99999999999999999 9999999999999987
Q ss_pred cC
Q 034021 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 80 ~~ 81 (94)
T 2e5g_A 80 EQ 81 (94)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 159
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.81 E-value=9.8e-19 Score=106.85 Aligned_cols=81 Identities=31% Similarity=0.547 Sum_probs=75.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
...++|||+|||.++++++|+++|+.||.|..+.++.+..++.++|+|||+|.+.++|.+|+.. ++..++|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3458999999999999999999999999999999999988899999999999999999999996 899999999999998
Q ss_pred cC
Q 034021 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 181 ~~ 182 (196)
T 1l3k_A 181 LS 182 (196)
T ss_dssp C-
T ss_pred CC
Confidence 65
No 160
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.81 E-value=5.2e-19 Score=109.98 Aligned_cols=79 Identities=37% Similarity=0.690 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~ 104 (106)
...+|||+|||.++++++|+++|+.||.|..+.++++. +..+|+|||+|.+.++|++|+..|||..++|++|+|.+++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35789999999999999999999999999999999885 3468999999999999999999999999999999999986
Q ss_pred C
Q 034021 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 180 ~ 180 (213)
T 4f02_A 180 S 180 (213)
T ss_dssp C
T ss_pred C
Confidence 4
No 161
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-18 Score=95.78 Aligned_cols=77 Identities=27% Similarity=0.511 Sum_probs=68.9
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|+ ++++++|+++|+.||.|..+.+. ..+|+|||+|.+.++|++|+..|++..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456789999995 89999999999999999999884 24579999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++++
T Consensus 82 ~~a~~ 86 (97)
T 1x5p_A 82 NIARK 86 (97)
T ss_dssp ECCSS
T ss_pred EECCC
Confidence 99875
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.80 E-value=1.3e-19 Score=108.23 Aligned_cols=80 Identities=31% Similarity=0.569 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|.+|+. +++..++|++|+|.+|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35789999999999999999999999999999999988789999999999999999999998 89999999999999987
Q ss_pred C
Q 034021 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 6
No 163
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.80 E-value=9.5e-19 Score=105.06 Aligned_cols=81 Identities=33% Similarity=0.468 Sum_probs=74.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC---CeEEE
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD---GRNIR 99 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~---g~~l~ 99 (106)
....++|||+|||.++++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|+..|+|..+. +++|+
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3357899999999999999999999999999999999886 6889999999999999999999999998765 48999
Q ss_pred EEecc
Q 034021 100 VNYAH 104 (106)
Q Consensus 100 v~~s~ 104 (106)
|.+|+
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99974
No 164
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.80 E-value=9.4e-19 Score=104.30 Aligned_cols=81 Identities=36% Similarity=0.631 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeE--EEE
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN--IRV 100 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~--l~v 100 (106)
....++|||+|||.++++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|.+|+..|+|..+.|+. |+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 345688999999999999999999999999999999999888999999999999999999999999999999965 888
Q ss_pred Eec
Q 034021 101 NYA 103 (106)
Q Consensus 101 ~~s 103 (106)
.||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 165
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.80 E-value=6e-19 Score=109.22 Aligned_cols=80 Identities=29% Similarity=0.606 Sum_probs=73.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.++++..++..+|+|||+|.+.++|++|+..+++..+.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46799999999999999999999999999999999988888899999999999999999999999999999999998764
No 166
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.80 E-value=7.6e-19 Score=108.92 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=70.0
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 25 SRTKLFIGGLS-YDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
..++|||+||| ..+++++|+++|+.||.|..+.++.+. +|+|||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 899999999999999999999997653 579999999999999999999999999999999998
Q ss_pred c
Q 034021 104 H 104 (106)
Q Consensus 104 ~ 104 (106)
+
T Consensus 78 ~ 78 (205)
T 3tyt_A 78 K 78 (205)
T ss_dssp S
T ss_pred c
Confidence 6
No 167
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=3.2e-18 Score=98.45 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=66.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeE-EEEEecCHHHHHHHHHHhCCceeCC--eEEEEEe
Q 034021 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGY-GFVKFASEAAAGEAIKEMDGLLLDG--RNIRVNY 102 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~al~~l~~~~~~g--~~l~v~~ 102 (106)
...|||+|||+.+++++|+++|+.||.|..+.+... .|+ |||+|.+.++|.+|+..|+|..+.| +.|+|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 345689999999999999999999999999988642 265 9999999999999999999999987 6999999
Q ss_pred ccC
Q 034021 103 AHK 105 (106)
Q Consensus 103 s~~ 105 (106)
|++
T Consensus 99 Ak~ 101 (124)
T 2e5i_A 99 ARP 101 (124)
T ss_dssp CSC
T ss_pred ecC
Confidence 875
No 168
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.79 E-value=3.7e-19 Score=101.24 Aligned_cols=74 Identities=24% Similarity=0.390 Sum_probs=65.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeE-----E
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN-----I 98 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~-----l 98 (106)
...++|||+|||.++++++|+++|+.||.|..+.++.+ |||||+|.+.++|++|+..||+..+.|++ +
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999998754 79999999999999999999999999988 7
Q ss_pred EEEecc
Q 034021 99 RVNYAH 104 (106)
Q Consensus 99 ~v~~s~ 104 (106)
+|..+.
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 777654
No 169
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=95.18 Aligned_cols=71 Identities=23% Similarity=0.383 Sum_probs=63.2
Q ss_pred CceEEEcCCCCCCCHHH----HHHHhccCC-CeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 26 RTKLFIGGLSYDTNETV----LKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
.+.|||+|||+.+++++ |+++|+.|| .|..+ ++ |+|||.|.+.++|++|++.|+|..+.|++|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 34499999999999887 558999995 99888 23 79999999999999999999999999999999
Q ss_pred EeccCC
Q 034021 101 NYAHKD 106 (106)
Q Consensus 101 ~~s~~~ 106 (106)
.+|+.+
T Consensus 79 ~~A~~~ 84 (96)
T 2diu_A 79 SFTPKN 84 (96)
T ss_dssp ESSCCS
T ss_pred EecCCC
Confidence 998753
No 170
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.78 E-value=3.9e-18 Score=109.70 Aligned_cols=83 Identities=22% Similarity=0.355 Sum_probs=77.3
Q ss_pred CCCCCceEEEcCCCCCC-CHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 22 DANSRTKLFIGGLSYDT-NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
.....++|||+|||.++ ++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|+..|+|..++|++|+|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 44567899999999995 999999999999999999998887 7889999999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++.+
T Consensus 259 ~~a~~ 263 (284)
T 3smz_A 259 SFCAP 263 (284)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 99875
No 171
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.2e-19 Score=99.69 Aligned_cols=78 Identities=15% Similarity=0.305 Sum_probs=68.4
Q ss_pred CCCCCceEEE--cCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee-----C
Q 034021 22 DANSRTKLFI--GGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL-----D 94 (106)
Q Consensus 22 ~~~~~~~l~v--~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~-----~ 94 (106)
.....++||| +||++++++++|+++|++||.|..+.++. .+|||||+|.+.++|++|+..|||..+ .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3345678999 77999999999999999999999987753 267999999999999999999999988 6
Q ss_pred CeEEEEEeccC
Q 034021 95 GRNIRVNYAHK 105 (106)
Q Consensus 95 g~~l~v~~s~~ 105 (106)
|.+|.|.+++.
T Consensus 95 g~~l~v~~a~~ 105 (114)
T 2cq2_A 95 KITLYLNFVEK 105 (114)
T ss_dssp EEECEEEEESC
T ss_pred CcEEEEEeccc
Confidence 88999998753
No 172
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.78 E-value=4e-18 Score=104.83 Aligned_cols=77 Identities=16% Similarity=0.289 Sum_probs=71.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 034021 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~ 104 (106)
.++|||+|||.++++++|+++|+.||.|..+.++++. ++.++|+|||+|.+.++|++|+..+ +..++|++|.|.+++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 5899999999999999999999999999999999887 5889999999999999999999854 569999999999865
No 173
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.78 E-value=2.5e-18 Score=93.78 Aligned_cols=76 Identities=25% Similarity=0.422 Sum_probs=62.1
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCce--eCCeEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL--LDGRNI 98 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~--~~g~~l 98 (106)
..+...++|||+|||+++++++|+++|+.||.|..+.++.+ ++|||||+|.+.++|++ +++.. +.|++|
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 34556789999999999999999999999999999999764 57899999999999884 44544 569999
Q ss_pred EEEeccC
Q 034021 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~s~~ 105 (106)
.|.++.+
T Consensus 77 ~v~~a~~ 83 (89)
T 3d2w_A 77 HISNAEP 83 (89)
T ss_dssp EEEECC-
T ss_pred EEEEcCC
Confidence 9999865
No 174
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.78 E-value=3.7e-18 Score=109.73 Aligned_cols=81 Identities=26% Similarity=0.498 Sum_probs=73.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLK----DAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~ 97 (106)
+....++|||+|||.++++++|+ ++|+.||.|..+.+.+ ++..+|||||+|.+.++|++|+..|+|..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 44568899999999999999977 8999999999998875 5678899999999999999999999999999999
Q ss_pred EEEEeccC
Q 034021 98 IRVNYAHK 105 (106)
Q Consensus 98 l~v~~s~~ 105 (106)
|+|.+++.
T Consensus 82 l~v~~a~~ 89 (282)
T 3pgw_A 82 MRIQYAKT 89 (282)
T ss_pred EEEEEecc
Confidence 99999865
No 175
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.78 E-value=2.6e-18 Score=103.17 Aligned_cols=80 Identities=30% Similarity=0.441 Sum_probs=72.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCC--CceeEEEEEecCHHHHHHHHHHhCCceeC---CeEEE
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTG--QSRGYGFVKFASEAAAGEAIKEMDGLLLD---GRNIR 99 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~al~~l~~~~~~---g~~l~ 99 (106)
+.++|||+|||.++++++|+++|+.||.|..+.++++..++ .++|||||+|.+.++|++|+..+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999998665 78999999999999999999999998765 56777
Q ss_pred EEecc
Q 034021 100 VNYAH 104 (106)
Q Consensus 100 v~~s~ 104 (106)
+.++.
T Consensus 82 ~~~~~ 86 (175)
T 3nmr_A 82 MKPAD 86 (175)
T ss_dssp EEECG
T ss_pred Ecccc
Confidence 77654
No 176
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.78 E-value=1.8e-18 Score=93.59 Aligned_cols=72 Identities=22% Similarity=0.630 Sum_probs=65.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQH----G-------EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
...++|||+|||.++++++|+++|+.| | .|..+.+..+ +|||||+|.+.++|++|+ .+++..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 356899999999999999999999999 8 8999988654 579999999999999999 899999
Q ss_pred eCCeEEEEEe
Q 034021 93 LDGRNIRVNY 102 (106)
Q Consensus 93 ~~g~~l~v~~ 102 (106)
+.|++|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 177
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=98.21 Aligned_cols=64 Identities=25% Similarity=0.481 Sum_probs=58.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCC---CCceeEEEEEecCHHHHHHHHHHh
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVT---GQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
...++|||+|||+++++++|+++|+.||.|. +.++.+..+ |.++|||||+|.+.++|++|+..+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 4568999999999999999999999999999 777777655 688999999999999999999988
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.77 E-value=5.2e-18 Score=102.14 Aligned_cols=78 Identities=31% Similarity=0.527 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNY 102 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~ 102 (106)
....++|||+|||.++++++|+++|+.||.|..+ ..++..+|+|||+|.+.++|.+|+..|+|..++|++|+|.+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 3456899999999999999999999999988766 34678899999999999999999999999999999999999
Q ss_pred ccC
Q 034021 103 AHK 105 (106)
Q Consensus 103 s~~ 105 (106)
+++
T Consensus 171 a~~ 173 (175)
T 1fje_B 171 TGE 173 (175)
T ss_dssp CSS
T ss_pred cCC
Confidence 875
No 179
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.76 E-value=2.3e-18 Score=102.81 Aligned_cols=79 Identities=38% Similarity=0.722 Sum_probs=72.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|++|+.. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 467999999999999999999999999999999999988899999999999999999999994 678899999988765
Q ss_pred C
Q 034021 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 3
No 180
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.76 E-value=1.1e-17 Score=93.76 Aligned_cols=82 Identities=12% Similarity=0.178 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHHHhccCCCeeEEEEeecCCC-CCceeEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 034021 24 NSRTKLFIGGLSY-----DTNETVLKDAFGQHGEIIEVKVICDRVT-GQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 24 ~~~~~l~v~~lp~-----~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~ 97 (106)
...++|+|.|+.. +-++++|++.|++||.|..+.++.++.+ +..+|++||+|.+.++|.+|+..|||..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3467899999962 2368999999999999999999987643 567899999999999999999999999999999
Q ss_pred EEEEeccC
Q 034021 98 IRVNYAHK 105 (106)
Q Consensus 98 l~v~~s~~ 105 (106)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 181
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.76 E-value=1.5e-17 Score=106.92 Aligned_cols=81 Identities=21% Similarity=0.400 Sum_probs=77.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.++.+..+|.++|+|||+|.+.++|.+|+..+++..++|++|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 56799999999999999999999999999999999998889999999999999999999999999999999999999986
Q ss_pred C
Q 034021 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 174 ~ 174 (284)
T 3smz_A 174 A 174 (284)
T ss_dssp G
T ss_pred C
Confidence 4
No 182
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.76 E-value=6.4e-18 Score=96.96 Aligned_cols=77 Identities=27% Similarity=0.511 Sum_probs=68.5
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
......++|||+|+ ++++++|+++|+.||.|..+.+. ..+|||||+|.+.++|++|+..|++..+.|++|+|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999995 79999999999999999999885 24679999999999999999999999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++++
T Consensus 106 ~~a~~ 110 (121)
T 2bz2_A 106 NIARK 110 (121)
T ss_dssp EECCS
T ss_pred EEeCC
Confidence 99875
No 183
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.76 E-value=1.7e-17 Score=106.67 Aligned_cols=79 Identities=28% Similarity=0.494 Sum_probs=72.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC-CeEEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD-GRNIRV 100 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~-g~~l~v 100 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+..+. +|+|||+|.+.++|.+|+..|+|..+. |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 33457889999999999999999999999999999998553 479999999999999999999999999 999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.|+++
T Consensus 278 ~~akk 282 (282)
T 3pgw_A 278 SFAKK 282 (282)
T ss_pred EEecC
Confidence 99975
No 184
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.75 E-value=7.8e-18 Score=108.67 Aligned_cols=83 Identities=24% Similarity=0.414 Sum_probs=74.9
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeecCC-CCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 22 DANSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRV-TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
.....++|||+|||.+ +++++|+++|+.||.|..+.++.+.. ++.++|+|||+|.+.++|.+|+ .|+|..++|++|+
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3445689999999999 99999999999999999999988774 3888999999999999999999 9999999999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|.++.+
T Consensus 285 V~~a~~ 290 (292)
T 2ghp_A 285 VSLADK 290 (292)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 999875
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.75 E-value=7.9e-18 Score=105.63 Aligned_cols=80 Identities=21% Similarity=0.384 Sum_probs=73.1
Q ss_pred cCCCCCceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 21 SDANSRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
......++|||+|||. ++++++|+++|+.||.|..+.+..+. +|||||+|.+.++|++|+..+++..+.|++|+
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4445678999999999 99999999999999999999998765 67999999999999999999999999999999
Q ss_pred EEeccC
Q 034021 100 VNYAHK 105 (106)
Q Consensus 100 v~~s~~ 105 (106)
|.++.+
T Consensus 104 v~~a~~ 109 (229)
T 2adc_A 104 ITLSKH 109 (229)
T ss_dssp EECCSC
T ss_pred EEEecC
Confidence 998863
No 186
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-18 Score=93.00 Aligned_cols=74 Identities=24% Similarity=0.473 Sum_probs=63.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~ 104 (106)
..++|||+|||.++++++|+++|+.||.|..+.++.+ ++|||||+|.+.++|++++. ....+.|++|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 4689999999999999999999999999999988754 47899999999999986543 2345699999999986
Q ss_pred C
Q 034021 105 K 105 (106)
Q Consensus 105 ~ 105 (106)
+
T Consensus 77 ~ 77 (88)
T 1wf0_A 77 P 77 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.73 E-value=1.3e-17 Score=105.36 Aligned_cols=78 Identities=27% Similarity=0.480 Sum_probs=70.2
Q ss_pred CCCCceEEEcCCCCCC---------CHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 034021 23 ANSRTKLFIGGLSYDT---------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 93 (106)
....++|||+|||..+ ++++|+++|+.||.|..+.++.. +|+|||+|.+.++|+.|+..|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4467899999999998 79999999999999999998753 57999999999999999999999999
Q ss_pred ------------CCeEEEEEeccCC
Q 034021 94 ------------DGRNIRVNYAHKD 106 (106)
Q Consensus 94 ------------~g~~l~v~~s~~~ 106 (106)
.|+.|.|.||+.+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999999754
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.73 E-value=9.5e-18 Score=102.86 Aligned_cols=76 Identities=22% Similarity=0.414 Sum_probs=70.4
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 25 SRTKLFIGGLSY-DTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
..++|||+|||. ++++++|+++|+.||.|..+.+..+. +|+|||+|.+.++|++|+..|++..+.|++|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357999999999 99999999999999999999998764 579999999999999999999999999999999998
Q ss_pred cC
Q 034021 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 77 ~~ 78 (198)
T 1qm9_A 77 KH 78 (198)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.72 E-value=3e-18 Score=103.15 Aligned_cols=83 Identities=27% Similarity=0.435 Sum_probs=70.8
Q ss_pred cCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q 034021 21 SDANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRV 100 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v 100 (106)
..+...++|||+|||.++++++|+++|+.||.+..+ ++.+..++.++|||||+|.+.++|++|++ +++..+.|++|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 355678999999999999999999999999876552 23333467788999999999999999995 9999999999999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++.+
T Consensus 86 ~~~~~ 90 (175)
T 1fje_B 86 EKPKG 90 (175)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99864
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.71 E-value=1.2e-16 Score=102.00 Aligned_cols=78 Identities=36% Similarity=0.603 Sum_probs=70.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~ 101 (106)
.....++|||+|||.++++++|+++|+.||.|..+.+.++ +|+|||+|.+.++|.+|+..++|..+.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3455689999999999999999999999999999988643 5799999999999999999999999999999999
Q ss_pred eccC
Q 034021 102 YAHK 105 (106)
Q Consensus 102 ~s~~ 105 (106)
++.+
T Consensus 92 ~a~~ 95 (261)
T 3sde_A 92 FATH 95 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 8864
No 191
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.70 E-value=2.1e-16 Score=99.11 Aligned_cols=76 Identities=18% Similarity=0.316 Sum_probs=70.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEe
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD-GRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~-g~~l~v~~ 102 (106)
..++|||+|||.++++++|+++|+.|| .|..+.++... +|+|||+|.+.++|.+|+..|+|..++ |++|+|.+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS-----TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC-----CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 468999999999999999999999999 99999886532 579999999999999999999999999 99999999
Q ss_pred ccC
Q 034021 103 AHK 105 (106)
Q Consensus 103 s~~ 105 (106)
+++
T Consensus 225 a~~ 227 (229)
T 2adc_A 225 SKS 227 (229)
T ss_dssp CSS
T ss_pred ecC
Confidence 986
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.70 E-value=1e-16 Score=98.23 Aligned_cols=76 Identities=18% Similarity=0.316 Sum_probs=70.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEe
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD-GRNIRVNY 102 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~-g~~l~v~~ 102 (106)
..++|||+|||.++++++|+++|+.|| .|..+.+..+. +|+|||+|.+.++|.+|+..|+|..++ |++|+|.+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 478999999999999999999999999 99999886542 579999999999999999999999999 99999999
Q ss_pred ccC
Q 034021 103 AHK 105 (106)
Q Consensus 103 s~~ 105 (106)
+++
T Consensus 194 a~~ 196 (198)
T 1qm9_A 194 SKS 196 (198)
T ss_dssp ECC
T ss_pred ecc
Confidence 876
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.70 E-value=1.1e-16 Score=103.31 Aligned_cols=80 Identities=13% Similarity=0.323 Sum_probs=69.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYA 103 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s 103 (106)
..++|||+|||.++++++|+++|+.|| .|..+.++.+. .+..+|+|||+|.+.++|.+|+..|+|..+.|++|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 99999998877 4778999999999999999999999999999999999997
Q ss_pred cC
Q 034021 104 HK 105 (106)
Q Consensus 104 ~~ 105 (106)
.+
T Consensus 195 ~~ 196 (292)
T 2ghp_A 195 NP 196 (292)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.2e-16 Score=88.15 Aligned_cols=81 Identities=21% Similarity=0.296 Sum_probs=68.4
Q ss_pred cCCCCCceEEEcCCCCCCC-----------HHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 034021 21 SDANSRTKLFIGGLSYDTN-----------ETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD 89 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~ 89 (106)
..+...++|+|.||..... +++|+++|++||.|..+.+ .+. ..+|+|||+|.+.++|++|+..||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3455688999999944332 5799999999999999965 443 267899999999999999999999
Q ss_pred CceeCCeEEEEEeccC
Q 034021 90 GLLLDGRNIRVNYAHK 105 (106)
Q Consensus 90 ~~~~~g~~l~v~~s~~ 105 (106)
|..+.|++|+|.++.+
T Consensus 86 g~~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 86 GRWFGGRQITAQAWDG 101 (112)
T ss_dssp TCEETTEECEEEECCS
T ss_pred CCEECCcEEEEEEeCC
Confidence 9999999999999765
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.68 E-value=4.7e-16 Score=99.26 Aligned_cols=80 Identities=30% Similarity=0.468 Sum_probs=72.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh-CCceeC---CeEEEE
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM-DGLLLD---GRNIRV 100 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l-~~~~~~---g~~l~v 100 (106)
...+|||+|||.++++++|+++|+.||.|..+.++.+. +|.++|+|||+|.+.++|.+|+..+ ++..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 46789999999999999999999999999999999995 8999999999999999999999999 455554 899999
Q ss_pred EeccC
Q 034021 101 NYAHK 105 (106)
Q Consensus 101 ~~s~~ 105 (106)
.++.+
T Consensus 174 ~~~~~ 178 (261)
T 3sde_A 174 EPMEQ 178 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98754
No 196
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.68 E-value=1.5e-16 Score=98.57 Aligned_cols=77 Identities=13% Similarity=0.192 Sum_probs=67.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCe--eEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCe----EE
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEI--IEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR----NI 98 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~----~l 98 (106)
..++|||+|||+++++++|+++|+.||.| ..+.++.+. +..+|+|||+|.+.++|.+|+..|||..+.|. ++
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 45789999999999999999999999998 888887764 44569999999999999999999999999876 57
Q ss_pred EEEec
Q 034021 99 RVNYA 103 (106)
Q Consensus 99 ~v~~s 103 (106)
.|.++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 76665
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.68 E-value=4.1e-17 Score=91.32 Aligned_cols=72 Identities=21% Similarity=0.387 Sum_probs=63.6
Q ss_pred EcCCCCCCCHHHHHHHh------------ccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 034021 31 IGGLSYDTNETVLKDAF------------GQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 31 v~~lp~~~~~~~l~~~f------------~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l 98 (106)
+.|||+.+++++|++.| ++||.|..+.++++. ++.++|+|||+|.+.++|++|+..|||..++|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777877777666 999999999998876 47789999999999999999999999999999999
Q ss_pred EEEec
Q 034021 99 RVNYA 103 (106)
Q Consensus 99 ~v~~s 103 (106)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.67 E-value=3.3e-16 Score=87.73 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=68.7
Q ss_pred CCceEEEcCC--CCCCC--------HHHHHHHhccCCCeeEEEEeecCCC--CCceeEEEEEecCHHHHHHHHHHhCCce
Q 034021 25 SRTKLFIGGL--SYDTN--------ETVLKDAFGQHGEIIEVKVICDRVT--GQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 25 ~~~~l~v~~l--p~~~~--------~~~l~~~f~~~g~i~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
+.+.|.+.|+ |.+.. +++|++.|++||.|..+.++++..+ +.++|++||+|.+.++|++|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567888888 44443 3689999999999999999887643 3568999999999999999999999999
Q ss_pred eCCeEEEEEeccC
Q 034021 93 LDGRNIRVNYAHK 105 (106)
Q Consensus 93 ~~g~~l~v~~s~~ 105 (106)
++|+.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998753
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.66 E-value=6.8e-16 Score=92.43 Aligned_cols=74 Identities=22% Similarity=0.623 Sum_probs=65.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQH----G-------EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 93 (106)
..++|||+|||.++++++|+++|+.| | .|..+.+.. .+|+|||+|.+.++|++|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46799999999999999999999999 6 677776643 3579999999999999999 7999999
Q ss_pred CCeEEEEEeccC
Q 034021 94 DGRNIRVNYAHK 105 (106)
Q Consensus 94 ~g~~l~v~~s~~ 105 (106)
.|++|+|.++..
T Consensus 76 ~g~~i~v~~~~~ 87 (172)
T 2g4b_A 76 QGQSLKIRRPHD 87 (172)
T ss_dssp TTEECEEECCSS
T ss_pred cCceeeecCCcc
Confidence 999999998754
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.64 E-value=1.3e-15 Score=93.07 Aligned_cols=74 Identities=22% Similarity=0.630 Sum_probs=64.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQH----G-------EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 93 (106)
..++|||+|||.++++++|+++|+.| | .|..+.+. ..+|||||+|.+.++|++|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 36799999999999999999999999 5 56666553 34689999999999999999 7999999
Q ss_pred CCeEEEEEeccC
Q 034021 94 DGRNIRVNYAHK 105 (106)
Q Consensus 94 ~g~~l~v~~s~~ 105 (106)
.|++|+|.++.+
T Consensus 76 ~g~~i~v~~~~~ 87 (198)
T 2yh0_A 76 QGQSLKIRRPHD 87 (198)
T ss_dssp TTEEEEEECCCC
T ss_pred cCceEEEeCCCC
Confidence 999999998753
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.64 E-value=2e-15 Score=86.19 Aligned_cols=80 Identities=18% Similarity=0.288 Sum_probs=69.1
Q ss_pred CCceEEEcCCC--CCC---CHHHHHHHhccCCCeeEEEEeecCC----CCCceeEEEEEecCHHHHHHHHHHhCCceeCC
Q 034021 25 SRTKLFIGGLS--YDT---NETVLKDAFGQHGEIIEVKVICDRV----TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG 95 (106)
Q Consensus 25 ~~~~l~v~~lp--~~~---~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g 95 (106)
..++|++.|+- .++ .+++|++.|++||.|..+.++.+.. ++..+|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 46789999983 222 3689999999999999999988764 34567999999999999999999999999999
Q ss_pred eEEEEEecc
Q 034021 96 RNIRVNYAH 104 (106)
Q Consensus 96 ~~l~v~~s~ 104 (106)
+.|+|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999875
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.57 E-value=1.2e-14 Score=95.97 Aligned_cols=77 Identities=13% Similarity=0.276 Sum_probs=64.6
Q ss_pred CCCCCceEEEcC--CCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC---Ce
Q 034021 22 DANSRTKLFIGG--LSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD---GR 96 (106)
Q Consensus 22 ~~~~~~~l~v~~--lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~---g~ 96 (106)
......+|||+| |+..+++++|+++|++||.|..+.+.. ++|||||+|.+.++|++|++.|||..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 345678999998 578999999999999999999886643 3689999999999999999999999872 34
Q ss_pred --EEEEEecc
Q 034021 97 --NIRVNYAH 104 (106)
Q Consensus 97 --~l~v~~s~ 104 (106)
.+.+.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 57777764
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-13 Score=76.64 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=60.0
Q ss_pred CceEEEcCCC-------CCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 034021 26 RTKLFIGGLS-------YDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 26 ~~~l~v~~lp-------~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l 98 (106)
...+.|.-.+ .++++++|+++|++||.|..+.++ +..+|||||+|.+.++|++|+..+++ +.+++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4456665433 458999999999999999999887 24678999999999999999997444 679999
Q ss_pred EEEeccC
Q 034021 99 RVNYAHK 105 (106)
Q Consensus 99 ~v~~s~~ 105 (106)
+|.++++
T Consensus 83 ~V~~a~~ 89 (100)
T 2d9o_A 83 KISWLEG 89 (100)
T ss_dssp EEECSSC
T ss_pred EEEEccC
Confidence 9999865
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.53 E-value=1.5e-13 Score=77.95 Aligned_cols=77 Identities=21% Similarity=0.282 Sum_probs=64.1
Q ss_pred CCCceEEEcCCC--CCC--------CHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 034021 24 NSRTKLFIGGLS--YDT--------NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 24 ~~~~~l~v~~lp--~~~--------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 93 (106)
...+.|.+.|+= .+. .+++|++.|++||.|..+.+.++. .+|++||+|.+.++|++|+..|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 456678888772 221 136889999999999999886553 478999999999999999999999999
Q ss_pred CCeEEEEEecc
Q 034021 94 DGRNIRVNYAH 104 (106)
Q Consensus 94 ~g~~l~v~~s~ 104 (106)
+|+.|+|.++.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999975
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=5.5e-13 Score=72.07 Aligned_cols=73 Identities=21% Similarity=0.315 Sum_probs=61.6
Q ss_pred CCceEEEcCCC----CCCCH----HHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCe
Q 034021 25 SRTKLFIGGLS----YDTNE----TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGR 96 (106)
Q Consensus 25 ~~~~l~v~~lp----~~~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~ 96 (106)
...+|.|.-.| .+... .+|.+.|+.||.|..+++..+. +||+|.+.++|.+|++ |+|..++|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 34567776655 23333 6799999999999999998764 8999999999999999 999999999
Q ss_pred EEEEEeccCC
Q 034021 97 NIRVNYAHKD 106 (106)
Q Consensus 97 ~l~v~~s~~~ 106 (106)
.|+|+++.+|
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999999876
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.1e-12 Score=74.86 Aligned_cols=78 Identities=21% Similarity=0.198 Sum_probs=68.1
Q ss_pred cCCCCCceEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecC-HHHHHHHHHHh--CCceeCCe
Q 034021 21 SDANSRTKLFIGGLSYD-TNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFAS-EAAAGEAIKEM--DGLLLDGR 96 (106)
Q Consensus 21 ~~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~al~~l--~~~~~~g~ 96 (106)
..-...+.|+|+||+.+ ++.++|+++|+.||.|..|.+.++.. .|||.|.+ ..+|..++..+ ++..|.|.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 34556889999999999 99999999999999999999987763 59999999 89999999988 47789998
Q ss_pred EEEEEecc
Q 034021 97 NIRVNYAH 104 (106)
Q Consensus 97 ~l~v~~s~ 104 (106)
.++++...
T Consensus 87 ~~~~evL~ 94 (121)
T 1owx_A 87 EVTWEVLE 94 (121)
T ss_dssp SEEEEECC
T ss_pred EEEEEECC
Confidence 88887643
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.23 E-value=5.7e-11 Score=74.00 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=59.5
Q ss_pred CCHHHHHHHhccCCCeeEEEEeecCC----CCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecc
Q 034021 38 TNETVLKDAFGQHGEIIEVKVICDRV----TGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVNYAH 104 (106)
Q Consensus 38 ~~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~~s~ 104 (106)
-.++++.+.|++||.|..+.+.++.. ++..+|++||+|.+.++|++|+..|+|..+.|+.|.+.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 34678999999999999999986543 34789999999999999999999999999999999999875
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=5.2e-11 Score=64.68 Aligned_cols=73 Identities=21% Similarity=0.307 Sum_probs=60.7
Q ss_pred CCCceEEEcCCCCC-----CCH----HHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 034021 24 NSRTKLFIGGLSYD-----TNE----TVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLD 94 (106)
Q Consensus 24 ~~~~~l~v~~lp~~-----~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~ 94 (106)
+..-||.|.-++.+ +.. .+|.+.|+.||.+..+++..+. +||+|.+.++|.+|++ |+|..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 34567888877632 222 5689999999999999998764 9999999999999999 9999999
Q ss_pred CeEEEEEeccC
Q 034021 95 GRNIRVNYAHK 105 (106)
Q Consensus 95 g~~l~v~~s~~ 105 (106)
|+.|+|++-.+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999997554
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.08 E-value=2.4e-09 Score=59.46 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=65.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccC-----CCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeE
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQH-----GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRN 97 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~ 97 (106)
....+++-+=+||..+++..|+.+..++ |.+..+.+..+. +-|+|+|.|...|.+|.-.|+|.++.|++
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3457788889999999999999999999 999999887765 36999999999999999889999999999
Q ss_pred EEEE
Q 034021 98 IRVN 101 (106)
Q Consensus 98 l~v~ 101 (106)
|++.
T Consensus 92 Lr~g 95 (117)
T 2l9w_A 92 IRSG 95 (117)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9985
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.41 E-value=3.3e-06 Score=45.98 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=48.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh
Q 034021 22 DANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 22 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
.+...+.+++ ++|..+...+|.++|+.|| -..|+++.+. .|||.|.+++.|..|+..+
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3344566777 9999999999999999999 4456677664 7999999999999999865
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=6.7e-05 Score=41.23 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=56.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcc---C--CCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q 034021 24 NSRTKLFIGGLSYDTNETVLKDAFGQ---H--GEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNI 98 (106)
Q Consensus 24 ~~~~~l~v~~lp~~~~~~~l~~~f~~---~--g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l 98 (106)
....+|.|.|||..+.++.|+-+|+. - |.+..+.... +.|+|.|.+...+++.|+. ..+.+.+..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 35678999999999999999999986 2 4577776642 3699999999999999993 4677888888
Q ss_pred EEEe
Q 034021 99 RVNY 102 (106)
Q Consensus 99 ~v~~ 102 (106)
.|..
T Consensus 77 sV~P 80 (104)
T 2dhx_A 77 SLRP 80 (104)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 8765
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.16 E-value=1.7e-05 Score=43.70 Aligned_cols=74 Identities=11% Similarity=0.124 Sum_probs=61.3
Q ss_pred CCceEEEcCCCCCC-C----HHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q 034021 25 SRTKLFIGGLSYDT-N----ETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIR 99 (106)
Q Consensus 25 ~~~~l~v~~lp~~~-~----~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~ 99 (106)
...+|+|.|++.++ . .+.++.+|..|+++....++.... =..|.|.+.++|.+|-..|++..+.|++++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35689999998765 2 267899999999887776766541 368999999999999999999999999999
Q ss_pred EEecc
Q 034021 100 VNYAH 104 (106)
Q Consensus 100 v~~s~ 104 (106)
|.++.
T Consensus 78 ~YFgq 82 (104)
T 1wey_A 78 LYFAQ 82 (104)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 98864
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=98.13 E-value=5.5e-06 Score=45.22 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=46.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 034021 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD 89 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~ 89 (106)
+.+++ ++|..+...+|.++|+.|| -..|.++.+. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45566 9999999999999999999 5667777765 79999999999999998663
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.12 E-value=3.2e-05 Score=41.76 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=54.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCC--ceeEEEEEecCHHHHHHHHHHhCCcee
Q 034021 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQ--SRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~~fv~f~~~~~a~~al~~l~~~~~ 93 (106)
++|.|++||..++++++.+.++....+....++....+.. ..+-|||.|.+.+++....+.++|..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 4688999999999999999999988766666655543322 345699999999999999999999986
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.98 E-value=6.8e-05 Score=42.33 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=56.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCC-eEEEEE
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDG-RNIRVN 101 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g-~~l~v~ 101 (106)
....+-|.|-++|... ...+.+.|+.||.|...... . ...+-.|.|.+..+|++||. .||..+++ ..|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 3457789999999996 56688899999999887652 1 23589999999999999999 59999975 555554
Q ss_pred e
Q 034021 102 Y 102 (106)
Q Consensus 102 ~ 102 (106)
.
T Consensus 93 p 93 (119)
T 1wwh_A 93 P 93 (119)
T ss_dssp E
T ss_pred E
Confidence 4
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.65 E-value=0.00024 Score=38.69 Aligned_cols=78 Identities=10% Similarity=0.086 Sum_probs=54.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCC--CceeEEEEEecCHHHHHHHHHHhCCceeCC-----eEE
Q 034021 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTG--QSRGYGFVKFASEAAAGEAIKEMDGLLLDG-----RNI 98 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~al~~l~~~~~~g-----~~l 98 (106)
.-+|.|+.||..+|++++.+.++.+-.+.....+....+. ...+-|||.|.+.++.....+..+|..+-+ .+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 4578899999999999988888766444322222222111 123458999999999999999999998632 245
Q ss_pred EEEec
Q 034021 99 RVNYA 103 (106)
Q Consensus 99 ~v~~s 103 (106)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 56654
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.33 E-value=0.00025 Score=40.63 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=54.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEeecC------------CCC-CceeEEEEEecCHHHHHHHHHHhCC
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIE-VKVICDR------------VTG-QSRGYGFVKFASEAAAGEAIKEMDG 90 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~------------~~~-~~~g~~fv~f~~~~~a~~al~~l~~ 90 (106)
....|.|-|.|.+.... +.+.|++||.|.+ ....++. -.. ....+-.|.|++..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 35567788998877654 6778999999865 2111100 000 134588999999999999999 599
Q ss_pred ceeCCeEEEEEecc
Q 034021 91 LLLDGRNIRVNYAH 104 (106)
Q Consensus 91 ~~~~g~~l~v~~s~ 104 (106)
..++|.-|-|.+..
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999877776644
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.21 E-value=0.00027 Score=48.56 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=42.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHH
Q 034021 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 87 (106)
.+.|+|. .|...++.+|.++|+.||+|..+....+. | .|+.|+|.+.+++++++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 5899997 79999999999999999999998665443 2 5999999999999977763
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.62 E-value=0.00097 Score=38.69 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=35.5
Q ss_pred CCceeEEEEEecCHHHHHHHHHHh-CCceeCCeEEEEEeccC
Q 034021 65 GQSRGYGFVKFASEAAAGEAIKEM-DGLLLDGRNIRVNYAHK 105 (106)
Q Consensus 65 ~~~~g~~fv~f~~~~~a~~al~~l-~~~~~~g~~l~v~~s~~ 105 (106)
...+|+++++|.+.++|++|+..+ ++..++| .+.+.++.+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 456789999999999999999999 9999999 999987653
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.35 E-value=0.0057 Score=35.57 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=26.2
Q ss_pred EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 034021 56 VKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDG 90 (106)
Q Consensus 56 ~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~ 90 (106)
+.+.++. ...+|++||+|.+.++|++|+..+++
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHhhcc
Confidence 4455554 35789999999999999999987764
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.87 E-value=0.061 Score=37.47 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=44.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 034021 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMD 89 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~ 89 (106)
+..++|+ +|..+...+|.+.|+.||. ..+.++-+. .+||.|.+.+.+..+++.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 4566665 9999999999999999995 455555443 69999999999999999875
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=75.71 E-value=5.8 Score=19.75 Aligned_cols=69 Identities=17% Similarity=0.311 Sum_probs=39.8
Q ss_pred eEEEc-CCCCCCCHHHHHHHhccCC-----CeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q 034021 28 KLFIG-GLSYDTNETVLKDAFGQHG-----EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLLLDGRNIRVN 101 (106)
Q Consensus 28 ~l~v~-~lp~~~~~~~l~~~f~~~g-----~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~g~~l~v~ 101 (106)
++++. +-...+...+|..++..-+ .|-.+.+.. .+.||+..... +..++..|.+..+.|++++++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNGK-GPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTTC-HHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHHH-HHHHHHHhccccCcCceEEEE
Confidence 45553 2233466677777776433 355566632 26888776544 556778888999999999998
Q ss_pred eccC
Q 034021 102 YAHK 105 (106)
Q Consensus 102 ~s~~ 105 (106)
.+++
T Consensus 73 ~~~~ 76 (76)
T 2g0c_A 73 KANK 76 (76)
T ss_dssp ECC-
T ss_pred ECCC
Confidence 8753
No 223
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=47.84 E-value=42 Score=19.99 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=35.7
Q ss_pred EEEcCCCCC---------CCHHHHHHHh--ccCCCeeEEEEeecCCCCCceeEEEEEec-CHHHHHHHHH
Q 034021 29 LFIGGLSYD---------TNETVLKDAF--GQHGEIIEVKVICDRVTGQSRGYGFVKFA-SEAAAGEAIK 86 (106)
Q Consensus 29 l~v~~lp~~---------~~~~~l~~~f--~~~g~i~~~~~~~~~~~~~~~g~~fv~f~-~~~~a~~al~ 86 (106)
+.|-|+|.. .....|++.| +.|.++. +..+..+ ..+.|++.|.|. +..-...|+.
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 445677651 3447889977 8998765 3344443 237889999998 4555556655
No 224
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=40.10 E-value=26 Score=18.28 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.0
Q ss_pred ceeEEEEEecCHHHHHHHHHHhCCce
Q 034021 67 SRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 67 ~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
..||.||+++...+...+++...|..
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCce
Confidence 57899999999999888888777664
No 225
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=36.93 E-value=72 Score=22.96 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=37.9
Q ss_pred CCCCCCCHHHHHHHhc----cCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh
Q 034021 33 GLSYDTNETVLKDAFG----QHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 33 ~lp~~~~~~~l~~~f~----~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
..+++.+-.+|.++|- .+|-|..+.+...+ -.....+.++.|.+.+++..++..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHH
Confidence 3455556667888873 35667877664444 2345668899999999988888754
No 226
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=32.86 E-value=53 Score=20.76 Aligned_cols=32 Identities=13% Similarity=0.346 Sum_probs=24.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeeEEEE
Q 034021 26 RTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKV 58 (106)
Q Consensus 26 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~ 58 (106)
...+.|+|+|+.++..-+.+++.. +.+....+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 345779999999999999999876 55554433
No 227
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=31.49 E-value=65 Score=17.33 Aligned_cols=49 Identities=8% Similarity=0.245 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHhcc-CC---CeeEE-EEeecCCCCCceeEEEEEecCHHHHHHHH
Q 034021 36 YDTNETVLKDAFGQ-HG---EIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEAI 85 (106)
Q Consensus 36 ~~~~~~~l~~~f~~-~g---~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~al 85 (106)
.+.+..++++-+.. |+ ....+ .+......|+..|+|.| |++.+.+.+.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 45677777777754 44 33444 33333334556777766 77777766543
No 228
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=31.30 E-value=27 Score=13.61 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=9.8
Q ss_pred CHHHHHHHhccC
Q 034021 39 NETVLKDAFGQH 50 (106)
Q Consensus 39 ~~~~l~~~f~~~ 50 (106)
++.+|++|+++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 578899998876
No 229
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=28.54 E-value=34 Score=21.72 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=24.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEe
Q 034021 27 TKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVI 59 (106)
Q Consensus 27 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~ 59 (106)
....|+|+|+.++..-|.+++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 356789999999999999998754445544443
No 230
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=28.53 E-value=72 Score=16.92 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=42.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh
Q 034021 25 SRTKLFIGGLSYDTNETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEM 88 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l 88 (106)
.++-+.|-|+|..+-..++.-.....|---.|.... |-|.+.|.+..+..-|++.|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 456788889999998888776666677655565542 35899999999988888866
No 231
>2dzr_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-067, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.34 E-value=74 Score=17.05 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=23.6
Q ss_pred CCceEEEcCCCCCCC--------HHHHHHHhccCCCeeEE
Q 034021 25 SRTKLFIGGLSYDTN--------ETVLKDAFGQHGEIIEV 56 (106)
Q Consensus 25 ~~~~l~v~~lp~~~~--------~~~l~~~f~~~g~i~~~ 56 (106)
+...|+|.+||..+. -..|++++..-..|.++
T Consensus 40 np~av~V~GLPegIpFr~P~~ygi~~Le~IL~~~~~I~F~ 79 (99)
T 2dzr_A 40 NPGSVIIEGLPPGIPFRKPCTFGSQNLERILAVADKIKFT 79 (99)
T ss_dssp CSSSEEEESCCTTCCSSCGGGSCHHHHHHHHHHTTTCEEE
T ss_pred CCCeEEEecCCCCCcccCCCcccHHHHHHHHHhccCcEEE
Confidence 345799999998764 47788888776667665
No 232
>2d9b_A Gtfii-I, general transcription factor II-I, TFII-I; structural genomics, unknown function, NPPSFA; NMR {Homo sapiens} PDB: 2e3l_A
Probab=28.13 E-value=79 Score=17.29 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=23.8
Q ss_pred CceEEEcCCCCCCC--------HHHHHHHhccCCCeeEE
Q 034021 26 RTKLFIGGLSYDTN--------ETVLKDAFGQHGEIIEV 56 (106)
Q Consensus 26 ~~~l~v~~lp~~~~--------~~~l~~~f~~~g~i~~~ 56 (106)
...|+|.+||..+. -..|+++++.-..|.++
T Consensus 51 p~~v~V~GLPegi~fR~P~~Ygi~~L~~ILe~~~~I~Fv 89 (109)
T 2d9b_A 51 QSAVVVQGLPEGVAFKHPENYDLATLKWILENKAGISFI 89 (109)
T ss_dssp CSSEEEESCCTTCCSCCTTSSCHHHHHHHHHTTTTCEEE
T ss_pred CccEEEeeCCCCCccCCccccCHHHHHHHHHcCcCceEE
Confidence 45799999987654 47888888877777766
No 233
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=27.97 E-value=79 Score=17.20 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHhcc-CC---CeeEE-EEeecCCCCCceeEEEEEecCHHHHHHH
Q 034021 36 YDTNETVLKDAFGQ-HG---EIIEV-KVICDRVTGQSRGYGFVKFASEAAAGEA 84 (106)
Q Consensus 36 ~~~~~~~l~~~f~~-~g---~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a 84 (106)
.+.+..++++-+.. |+ ....+ .+......|+..|+|.| |++.+.+.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35677777777653 44 23333 33333334556777776 7787776643
No 234
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=27.74 E-value=47 Score=17.96 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=21.6
Q ss_pred ceeEEEEEecCHHHHHHHHHHhCCce
Q 034021 67 SRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 67 ~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
-+||-||+=.+..+...|++.+.+..
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 47899999999999999998665443
No 235
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=27.24 E-value=73 Score=17.02 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhcc-CCC---eeEE-EEeecCCCCCceeEEEEEecCHHHHHH
Q 034021 36 YDTNETVLKDAFGQ-HGE---IIEV-KVICDRVTGQSRGYGFVKFASEAAAGE 83 (106)
Q Consensus 36 ~~~~~~~l~~~f~~-~g~---i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~ 83 (106)
.+.+..++++-+.. |+. ...+ .+......|+..|+|.| |++.+.+.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35677777777653 332 2222 11111223445666655 566555543
No 236
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=27.04 E-value=1.1e+02 Score=18.59 Aligned_cols=47 Identities=9% Similarity=0.144 Sum_probs=32.6
Q ss_pred CHHHHHHHhccCCCeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 034021 39 NETVLKDAFGQHGEIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 39 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
.+++|.+-...|.+.. +..+.-+..-||++.+.....+.+..|.|..
T Consensus 66 ~~~~I~~Ei~aYnpLi-------P~~~~l~ATl~IE~~d~~er~~~L~~L~Gie 112 (194)
T 3fjv_A 66 DEDGIQAELDAYLPLV-------PDGSNLKATLQIEYENETQRRAALARLVGIE 112 (194)
T ss_dssp SHHHHHHHHHHHGGGC-------CCSSEEEEEEEECCSSHHHHHHHHHHTTTGG
T ss_pred CHHHHHHHHHHhcccC-------CCCCcEEEEEEEEcCCHHHHHHHHHHhcCcc
Confidence 4455666665665432 2123335578999999999999999998875
No 237
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=27.00 E-value=81 Score=17.01 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHhcc-CC---CeeEE-EEeecCCCCCceeEEEEEecCHHHHHH
Q 034021 36 YDTNETVLKDAFGQ-HG---EIIEV-KVICDRVTGQSRGYGFVKFASEAAAGE 83 (106)
Q Consensus 36 ~~~~~~~l~~~f~~-~g---~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~ 83 (106)
.+.+..+|++-+.+ |+ ....+ .+......|+..|||.| |++.+.+.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677787777754 33 23333 34434434566777766 777777654
No 238
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=26.89 E-value=49 Score=17.31 Aligned_cols=28 Identities=7% Similarity=0.037 Sum_probs=23.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccC
Q 034021 23 ANSRTKLFIGGLSYDTNETVLKDAFGQH 50 (106)
Q Consensus 23 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~ 50 (106)
-.....+.+.+.|.+++.++..+++..|
T Consensus 16 lNtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 16 LNTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp CCCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred cCCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 3456678899999999999999888876
No 239
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.48 E-value=79 Score=16.42 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=36.9
Q ss_pred EcCCCCCCCHHHHHHHhcc-CC-CeeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHH
Q 034021 31 IGGLSYDTNETVLKDAFGQ-HG-EIIEVKVICDRVTGQSRGYGFVKFASEAAAGEAIKE 87 (106)
Q Consensus 31 v~~lp~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 87 (106)
+--.....+..+|++.++. || .+..+..+..+ .+. .=|+|.+....+|......
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~~--KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RGE--KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TSC--EEEEEEECTTSCHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CCc--eEEEEEcCCCCcHHHHHHh
Confidence 3346888999999999976 66 57777665544 332 2499999877666655443
No 240
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=25.45 E-value=39 Score=12.90 Aligned_cols=12 Identities=25% Similarity=0.374 Sum_probs=8.7
Q ss_pred HHHHHHHhccCC
Q 034021 40 ETVLKDAFGQHG 51 (106)
Q Consensus 40 ~~~l~~~f~~~g 51 (106)
-.+++++|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 356778888776
No 241
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=24.38 E-value=73 Score=18.07 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=21.6
Q ss_pred ceeEEEEEecCHHHHHHHHHHhCCce
Q 034021 67 SRGYGFVKFASEAAAGEAIKEMDGLL 92 (106)
Q Consensus 67 ~~g~~fv~f~~~~~a~~al~~l~~~~ 92 (106)
..||-||+.....+...+++...|..
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~gV~ 67 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRHAR 67 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTTEE
T ss_pred CCcEEEEEEEchHHHHHHHhCCCCEE
Confidence 57899999999988888888777664
No 242
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=23.18 E-value=27 Score=21.84 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=23.0
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEe
Q 034021 29 LFIGGLSYDTNETVLKDAFGQHGEIIEVKVI 59 (106)
Q Consensus 29 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~ 59 (106)
..|+|+|+.++..-|.+++...+.+....++
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 3689999999999999998765555444433
No 243
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=22.13 E-value=82 Score=15.37 Aligned_cols=22 Identities=23% Similarity=0.638 Sum_probs=13.5
Q ss_pred EEEEeecCCCCCceeEEEEEecC
Q 034021 55 EVKVICDRVTGQSRGYGFVKFAS 77 (106)
Q Consensus 55 ~~~~~~~~~~~~~~g~~fv~f~~ 77 (106)
..+++..+ .....|+++|.|++
T Consensus 21 ~arlllnr-Rps~~G~~wiKyED 42 (62)
T 1igq_A 21 PARLILNR-RPPAEGYAWLKYED 42 (62)
T ss_dssp EEEECTTB-CCSSTTEEEEEETT
T ss_pred hhhhhhcc-CCCcCceEEEEEec
Confidence 34444443 23356799999987
No 244
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=21.42 E-value=1e+02 Score=19.05 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=18.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhcc
Q 034021 28 KLFIGGLSYDTNETVLKDAFGQ 49 (106)
Q Consensus 28 ~l~v~~lp~~~~~~~l~~~f~~ 49 (106)
.+.|+|+|+.++..-+.+++..
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~ 113 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSY 113 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTT
T ss_pred eEEEECCCCCccHHHHHHHHhc
Confidence 5778999999998888777764
No 245
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=21.41 E-value=72 Score=19.45 Aligned_cols=27 Identities=4% Similarity=0.143 Sum_probs=22.9
Q ss_pred ceeEEEEEecCHHHHHHHHHHhCCcee
Q 034021 67 SRGYGFVKFASEAAAGEAIKEMDGLLL 93 (106)
Q Consensus 67 ~~g~~fv~f~~~~~a~~al~~l~~~~~ 93 (106)
-+||-||+=.+......|+..+.+...
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 578999999999999999998777643
No 246
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=21.30 E-value=35 Score=18.41 Aligned_cols=11 Identities=18% Similarity=0.474 Sum_probs=7.5
Q ss_pred HHHHHHhccCC
Q 034021 41 TVLKDAFGQHG 51 (106)
Q Consensus 41 ~~l~~~f~~~g 51 (106)
..|+++|.+||
T Consensus 91 ~~ire~fqKYG 101 (101)
T 4aj5_1 91 MKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 45778888876
No 247
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=20.68 E-value=79 Score=19.54 Aligned_cols=23 Identities=13% Similarity=0.382 Sum_probs=18.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhccC
Q 034021 28 KLFIGGLSYDTNETVLKDAFGQH 50 (106)
Q Consensus 28 ~l~v~~lp~~~~~~~l~~~f~~~ 50 (106)
.+.|+|+|+.++..-+.+++...
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~ 119 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNK 119 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTG
T ss_pred cEEEEECchhccHHHHHHHHhcC
Confidence 46789999999988888888653
Done!