BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034024
         (106 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q51MB1|PALI_MAGO7 pH-response regulator protein palI/RIM9 OS=Magnaporthe oryzae
           (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=RIM9 PE=3
           SV=1
          Length = 736

 Score = 30.4 bits (67), Expect = 3.5,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 15/81 (18%)

Query: 28  FSSTSNISSSRVDVVIFVI----WELVILAFLVFSAVSLYFRHMR-------LAIILVSI 76
           F S S+  S+R  +++F++    + + +LAFLV   V L+  HM         A ILV++
Sbjct: 113 FHSPSH--SARYLLIVFIVGLLNFVICLLAFLV--DVLLFVPHMAWGSYLVLAATILVAL 168

Query: 77  TMLLLLCMKVTKQVRLARKKK 97
           + L+   M+ T   R ARKK+
Sbjct: 169 SGLVACAMRRTLVSRKARKKR 189


>sp|Q85T01|NU5M_CRYNH NADH-ubiquinone oxidoreductase chain 5 OS=Cryptococcus neoformans
           var. grubii serotype A (strain H99 / ATCC 208821 / CBS
           10515 / FGSC 9487) GN=ND5 PE=3 SV=1
          Length = 662

 Score = 30.0 bits (66), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 27/40 (67%)

Query: 43  IFVIWELVILAFLVFSAVSLYFRHMRLAIILVSITMLLLL 82
           ++++  LV L FLVF+  ++ F    L++ILV ++ L+LL
Sbjct: 616 LYIMLGLVSLIFLVFAPTNMVFNEYGLSLILVYLSALVLL 655


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.332    0.136    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,998,387
Number of Sequences: 539616
Number of extensions: 743133
Number of successful extensions: 4291
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4281
Number of HSP's gapped (non-prelim): 16
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 55 (25.8 bits)