Query 034024
Match_columns 106
No_of_seqs 12 out of 14
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 15:02:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034024.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034024hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftb2 f.17.2.1 (B:27-117) Cy 49.6 2.3 0.00017 26.1 0.7 34 25-58 1-34 (91)
2 d1vk2a_ c.18.1.2 (A:) Thermoph 28.0 17 0.0012 23.8 2.4 22 1-23 1-22 (191)
3 d2hyda2 f.37.1.1 (A:1-323) Put 24.4 69 0.0051 19.7 4.8 27 58-84 152-178 (323)
4 d2a15a1 d.17.4.3 (A:5-136) Hyp 23.2 12 0.00084 21.4 0.7 28 3-30 1-30 (132)
5 d2b0la1 a.4.5.66 (A:167-257) G 23.1 20 0.0014 23.2 1.9 15 1-15 45-59 (91)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 21.5 84 0.0061 20.1 4.9 19 71-89 417-435 (447)
7 d3b60a2 f.37.1.1 (A:10-328) Mu 17.2 1.1E+02 0.0079 18.6 7.9 30 55-84 144-173 (319)
8 d1jiga_ a.25.1.1 (A:) Dodecame 15.7 37 0.0027 20.6 2.0 14 3-16 2-15 (146)
9 d1ppjd2 f.23.11.1 (D:196-241) 13.8 1.1E+02 0.0077 16.8 4.0 16 52-67 15-30 (46)
10 d2j8ka1 b.80.8.1 (A:1-175) NP2 12.5 33 0.0024 21.2 1.0 18 8-25 3-20 (175)
No 1
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=49.61 E-value=2.3 Score=26.13 Aligned_cols=34 Identities=6% Similarity=0.166 Sum_probs=22.3
Q ss_pred eeeecCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 034024 25 VSFFSSTSNISSSRVDVVIFVIWELVILAFLVFS 58 (106)
Q Consensus 25 ls~fS~~~~~~~sr~dvvv~v~w~llf~~l~v~s 58 (106)
.|+|.|+.++...-.|+...+.|-.++.+..|+.
T Consensus 1 ~s~ldP~gp~a~~i~~L~~~~~~i~~iv~v~V~~ 34 (91)
T d1fftb2 1 SALLDPKGQIGLEQRSLILTAFGLMLIVVIPAIL 34 (91)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHHTTTTTTHHHH
T ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999888666666666666655555554443
No 2
>d1vk2a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermotoga maritima [TaxId: 2336]}
Probab=28.03 E-value=17 Score=23.77 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.0
Q ss_pred CcchhHHHHHHHHHhhhhhcccc
Q 034024 1 MITRSNLAEQLREYQNRSKHEWA 23 (106)
Q Consensus 1 mITRskLvEQLReyQiRs~h~~a 23 (106)
|-||.+.+|+|+| |||+=+.+.
T Consensus 1 ~~~~~~~l~~L~~-~i~~C~~C~ 22 (191)
T d1vk2a_ 1 MYTREELMEIVSE-RVKKCTACP 22 (191)
T ss_dssp CCCHHHHHHHHHH-HHHHCCSSG
T ss_pred CCCHHHHHHHHHH-HHHcCCCCC
Confidence 6799999999999 999877774
No 3
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=24.40 E-value=69 Score=19.66 Aligned_cols=27 Identities=15% Similarity=0.349 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034024 58 SAVSLYFRHMRLAIILVSITMLLLLCM 84 (106)
Q Consensus 58 s~vtlYfr~~~Ls~~~ic~~ilL~~~l 84 (106)
+.+.+..-..+++.+.+++..+.....
T Consensus 152 ~~~~l~~~~~~l~li~l~~~~~~~~~~ 178 (323)
T d2hyda2 152 ALSIMFFLDVKLTLAALFIFPFYILTV 178 (323)
T ss_dssp HHHHHHHHCTTTHHHHTTHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 333333344455555444444443333
No 4
>d2a15a1 d.17.4.3 (A:5-136) Hypothetical protein Rv0760c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.19 E-value=12 Score=21.39 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=20.6
Q ss_pred chhHHHHHHHHH-hhhhhccc-ceeeeecC
Q 034024 3 TRSNLAEQLREY-QNRSKHEW-ASVSFFSS 30 (106)
Q Consensus 3 TRskLvEQLRey-QiRs~h~~-aals~fS~ 30 (106)
||++.++.+|.| |.=.+|++ +-+++|+|
T Consensus 1 t~~p~~~~~~~~~~a~~~~D~~~~~~l~a~ 30 (132)
T d2a15a1 1 TQSPALIASQSSWRCVQAHDREGWLALMAD 30 (132)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHTEEE
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHcCC
Confidence 789999998874 66678888 44556665
No 5
>d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=23.10 E-value=20 Score=23.23 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=13.3
Q ss_pred CcchhHHHHHHHHHh
Q 034024 1 MITRSNLAEQLREYQ 15 (106)
Q Consensus 1 mITRskLvEQLReyQ 15 (106)
.||||-+|..||.+.
T Consensus 45 giTRSVIVNALRK~E 59 (91)
T d2b0la1 45 GITRSVIVNALRKLE 59 (91)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhh
Confidence 589999999999874
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=21.53 E-value=84 Score=20.09 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034024 71 IILVSITMLLLLCMKVTKQ 89 (106)
Q Consensus 71 ~~~ic~~ilL~~~lkitrq 89 (106)
.....+++++...+...++
T Consensus 417 ~~~~~~~~~~~~~~~~~~~ 435 (447)
T d1pw4a_ 417 IGGSILAVILLIVVMIGEK 435 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3333444444444444333
No 7
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=17.18 E-value=1.1e+02 Score=18.57 Aligned_cols=30 Identities=17% Similarity=0.426 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034024 55 LVFSAVSLYFRHMRLAIILVSITMLLLLCM 84 (106)
Q Consensus 55 ~v~s~vtlYfr~~~Ls~~~ic~~ilL~~~l 84 (106)
++.+.+.+++-...++.+++++.++.....
T Consensus 144 ~i~~~~~~~~~~~~l~li~l~~~~~~~~~~ 173 (319)
T d3b60a2 144 IIGLFIMMFYYSWQLSIILVVLAPIVSIAI 173 (319)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhhhccchhhhhhHHHHHHHHH
Confidence 345555555555556655554444433333
No 8
>d1jiga_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus anthracis, Dlp-2 [TaxId: 1392]}
Probab=15.72 E-value=37 Score=20.65 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=9.1
Q ss_pred chhHHHHHHHHHhh
Q 034024 3 TRSNLAEQLREYQN 16 (106)
Q Consensus 3 TRskLvEQLReyQi 16 (106)
||++++|+|..++.
T Consensus 2 ~~~~~~~~Ln~~lA 15 (146)
T d1jiga_ 2 TKTNVVEVLNKQVA 15 (146)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 56777777766543
No 9
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.85 E-value=1.1e+02 Score=16.85 Aligned_cols=16 Identities=6% Similarity=0.100 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 034024 52 LAFLVFSAVSLYFRHM 67 (106)
Q Consensus 52 ~~l~v~s~vtlYfr~~ 67 (106)
+++.+++.++.|.|..
T Consensus 15 ~~l~~l~~l~yy~KR~ 30 (46)
T d1ppjd2 15 LMMGLLLPLVYAMKRH 30 (46)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555555433
No 10
>d2j8ka1 b.80.8.1 (A:1-175) NP275-NP276 {Nostoc punctiforme [TaxId: 272131]}
Probab=12.47 E-value=33 Score=21.23 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=11.2
Q ss_pred HHHHHHHhhhhhccccee
Q 034024 8 AEQLREYQNRSKHEWASV 25 (106)
Q Consensus 8 vEQLReyQiRs~h~~aal 25 (106)
||||||-=.=-+.+|+.+
T Consensus 3 ~~~~~~~~~~~e~dF~~~ 20 (175)
T d2j8ka1 3 VEKLRQLYAAGERDFSIV 20 (175)
T ss_dssp HHHHHHHHHTTCCBCTTC
T ss_pred HHHHHHHHHhcccCcCcC
Confidence 788888654445556443
Done!