BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034026
(106 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356512776|ref|XP_003525092.1| PREDICTED: uncharacterized protein LOC100815419 [Glycine max]
Length = 141
Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 76/101 (75%), Positives = 84/101 (83%), Gaps = 3/101 (2%)
Query: 1 MAQQAAADHQQLDSP-LQSPQPSRDDMNMISCVTALEAALLPCLPARELQAIDRSPHPSH 59
M + D Q + P L S PS+DDM +SCV ALEAALLPCLPARELQAIDRSPHPSH
Sbjct: 1 MGDRQVVDQQHMGDPQLPSSPPSKDDM--VSCVMALEAALLPCLPARELQAIDRSPHPSH 58
Query: 60 QIDVERHARDFMEAAKKLQLYFISLQREDQPTEVEMLRKVI 100
QIDV+R+ARDFMEAAKKLQLYFISLQRED+PT+VEMLRK I
Sbjct: 59 QIDVDRYARDFMEAAKKLQLYFISLQREDKPTKVEMLRKEI 99
>gi|356525553|ref|XP_003531389.1| PREDICTED: uncharacterized protein LOC100789247 [Glycine max]
Length = 141
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/101 (73%), Positives = 84/101 (83%), Gaps = 3/101 (2%)
Query: 1 MAQQAAADHQQL-DSPLQSPQPSRDDMNMISCVTALEAALLPCLPARELQAIDRSPHPSH 59
M + D Q D+ L S PS+DDM +SCV ALEAALLPCLPARELQAIDRSPHPSH
Sbjct: 1 MGDRLVVDQQHTGDAQLPSSPPSKDDM--VSCVMALEAALLPCLPARELQAIDRSPHPSH 58
Query: 60 QIDVERHARDFMEAAKKLQLYFISLQREDQPTEVEMLRKVI 100
QIDV+R+ARDFMEAAKKLQLYFISLQRED+PT++EMLRK +
Sbjct: 59 QIDVDRYARDFMEAAKKLQLYFISLQREDKPTKLEMLRKEV 99
>gi|449469116|ref|XP_004152267.1| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like [Cucumis sativus]
gi|449484322|ref|XP_004156851.1| PREDICTED: mediator of RNA polymerase II transcription subunit
28-like [Cucumis sativus]
Length = 141
Score = 144 bits (362), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 77/101 (76%), Positives = 83/101 (82%), Gaps = 3/101 (2%)
Query: 1 MAQQAAADHQQ-LDSPLQSPQPSRDDMNMISCVTALEAALLPCLPARELQAIDRSPHPSH 59
MA++ D Q LD LQS Q R+DM I+ V ALEAALLPCLPARELQAIDRSPHPSH
Sbjct: 1 MAERQPIDQQHSLDPQLQSSQSPREDM--IAYVMALEAALLPCLPARELQAIDRSPHPSH 58
Query: 60 QIDVERHARDFMEAAKKLQLYFISLQREDQPTEVEMLRKVI 100
Q+DVERHARDFMEAAKKLQLYFI LQREDQPT+VE LRK I
Sbjct: 59 QVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEI 99
>gi|357519693|ref|XP_003630135.1| hypothetical protein MTR_8g092180 [Medicago truncatula]
gi|355524157|gb|AET04611.1| hypothetical protein MTR_8g092180 [Medicago truncatula]
Length = 115
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/73 (91%), Positives = 70/73 (95%)
Query: 28 MISCVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQRE 87
MISCV ALEAALLPCLPARELQAIDRSPHPSHQIDV+RHARDFMEAAKKLQLYFISLQRE
Sbjct: 1 MISCVMALEAALLPCLPARELQAIDRSPHPSHQIDVDRHARDFMEAAKKLQLYFISLQRE 60
Query: 88 DQPTEVEMLRKVI 100
D+PT+ EMLRK I
Sbjct: 61 DKPTKAEMLRKEI 73
>gi|225437408|ref|XP_002268380.1| PREDICTED: uncharacterized protein LOC100246950 [Vitis vinifera]
Length = 139
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 70/74 (94%)
Query: 27 NMISCVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQR 86
+MI+CV ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQ+YFISLQR
Sbjct: 24 DMIACVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQVYFISLQR 83
Query: 87 EDQPTEVEMLRKVI 100
EDQPT+ E LRK I
Sbjct: 84 EDQPTKAETLRKEI 97
>gi|255564204|ref|XP_002523099.1| conserved hypothetical protein [Ricinus communis]
gi|223537661|gb|EEF39284.1| conserved hypothetical protein [Ricinus communis]
Length = 140
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 66/74 (89%), Positives = 67/74 (90%)
Query: 27 NMISCVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQR 86
+MI CV ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFI LQR
Sbjct: 25 DMIECVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQR 84
Query: 87 EDQPTEVEMLRKVI 100
EDQPT E LRK I
Sbjct: 85 EDQPTAAETLRKEI 98
>gi|224131100|ref|XP_002321001.1| predicted protein [Populus trichocarpa]
gi|222861774|gb|EEE99316.1| predicted protein [Populus trichocarpa]
Length = 115
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/73 (90%), Positives = 66/73 (90%)
Query: 28 MISCVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQRE 87
MI CV ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFI LQRE
Sbjct: 1 MIGCVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQRE 60
Query: 88 DQPTEVEMLRKVI 100
DQPT E LRK I
Sbjct: 61 DQPTMSETLRKDI 73
>gi|326529489|dbj|BAK04691.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 146
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/80 (80%), Positives = 69/80 (86%), Gaps = 2/80 (2%)
Query: 23 RDDMNMISCVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFI 82
RDDM ++CV ALEAALLPCLPARELQA+DRS SHQIDVERHARDFMEAAKKLQ YFI
Sbjct: 29 RDDM--MACVAALEAALLPCLPARELQAVDRSLQSSHQIDVERHARDFMEAAKKLQSYFI 86
Query: 83 SLQREDQPTEVEMLRKVIYS 102
SLQREDQPT E+LRK I +
Sbjct: 87 SLQREDQPTNEELLRKEITT 106
>gi|297820014|ref|XP_002877890.1| hypothetical protein ARALYDRAFT_906664 [Arabidopsis lyrata subsp.
lyrata]
gi|297323728|gb|EFH54149.1| hypothetical protein ARALYDRAFT_906664 [Arabidopsis lyrata subsp.
lyrata]
Length = 156
Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/84 (76%), Positives = 72/84 (85%), Gaps = 1/84 (1%)
Query: 18 SPQPSRDDMNMISCVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKL 77
S + D ++++CVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKL
Sbjct: 31 SNNQNHDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKL 90
Query: 78 QLYFISLQREDQ-PTEVEMLRKVI 100
QLYF+ L+RED+ PT E LRK I
Sbjct: 91 QLYFMGLKREDRSPTRAESLRKEI 114
>gi|242089591|ref|XP_002440628.1| hypothetical protein SORBIDRAFT_09g004280 [Sorghum bicolor]
gi|241945913|gb|EES19058.1| hypothetical protein SORBIDRAFT_09g004280 [Sorghum bicolor]
Length = 145
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/76 (81%), Positives = 67/76 (88%)
Query: 27 NMISCVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQR 86
+M++CV ALEAALLPCLPARELQA+DRS SHQIDVERHARDFMEAAKKLQ YFISLQR
Sbjct: 30 DMLACVAALEAALLPCLPARELQAVDRSLQSSHQIDVERHARDFMEAAKKLQSYFISLQR 89
Query: 87 EDQPTEVEMLRKVIYS 102
EDQPT EMLRK I +
Sbjct: 90 EDQPTAEEMLRKEITT 105
>gi|297743905|emb|CBI36875.3| unnamed protein product [Vitis vinifera]
Length = 110
Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/67 (92%), Positives = 64/67 (95%)
Query: 34 ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQREDQPTEV 93
ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQ+YFISLQREDQPT+
Sbjct: 2 ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQVYFISLQREDQPTKA 61
Query: 94 EMLRKVI 100
E LRK I
Sbjct: 62 ETLRKEI 68
>gi|357134587|ref|XP_003568898.1| PREDICTED: uncharacterized protein LOC100840919 [Brachypodium
distachyon]
Length = 146
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/80 (80%), Positives = 69/80 (86%), Gaps = 2/80 (2%)
Query: 23 RDDMNMISCVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFI 82
RDDM ++CV ALEAALLPCLPARELQA+DRS SHQIDVERHARDFMEAAKKLQ YFI
Sbjct: 29 RDDM--MACVAALEAALLPCLPARELQAVDRSLQSSHQIDVERHARDFMEAAKKLQSYFI 86
Query: 83 SLQREDQPTEVEMLRKVIYS 102
SLQREDQPT EML+K I +
Sbjct: 87 SLQREDQPTTEEMLQKEIAT 106
>gi|15231698|ref|NP_190854.1| uncharacterized protein [Arabidopsis thaliana]
gi|75174078|sp|Q9LFA5.1|MED28_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit
28
gi|7529710|emb|CAB86890.1| putative protein [Arabidopsis thaliana]
gi|26450487|dbj|BAC42357.1| unknown protein [Arabidopsis thaliana]
gi|28827452|gb|AAO50570.1| unknown protein [Arabidopsis thaliana]
gi|332645480|gb|AEE79001.1| uncharacterized protein [Arabidopsis thaliana]
Length = 156
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 77/91 (84%), Gaps = 6/91 (6%)
Query: 16 LQSPQ-PSRDDMN----MISCVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDF 70
++SP+ PS + N +++CVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDF
Sbjct: 24 IRSPETPSNNQNNDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDF 83
Query: 71 MEAAKKLQLYFISLQREDQ-PTEVEMLRKVI 100
MEAAKKLQLYF+ L+RED+ P+ E L+K I
Sbjct: 84 MEAAKKLQLYFMGLKREDRAPSRAESLKKDI 114
>gi|218196123|gb|EEC78550.1| hypothetical protein OsI_18513 [Oryza sativa Indica Group]
Length = 177
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/79 (78%), Positives = 69/79 (87%), Gaps = 2/79 (2%)
Query: 20 QPSRDDMNMISCVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQL 79
+ +RDDM ++CV ALEAALLPCLPARELQA+DRS SHQIDVERHARDFMEAAKKLQ
Sbjct: 26 ESARDDM--MACVAALEAALLPCLPARELQAVDRSLQSSHQIDVERHARDFMEAAKKLQS 83
Query: 80 YFISLQREDQPTEVEMLRK 98
YFISLQRED+P+ EMLRK
Sbjct: 84 YFISLQREDRPSTEEMLRK 102
>gi|115462173|ref|NP_001054686.1| Os05g0154900 [Oryza sativa Japonica Group]
gi|54291848|gb|AAV32216.1| unknown protein [Oryza sativa Japonica Group]
gi|113578237|dbj|BAF16600.1| Os05g0154900 [Oryza sativa Japonica Group]
gi|215678528|dbj|BAG92183.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 146
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/81 (77%), Positives = 70/81 (86%), Gaps = 2/81 (2%)
Query: 20 QPSRDDMNMISCVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQL 79
+ +RDDM ++CV ALEAALLPCLPARELQA+DRS SHQIDVERHARDFMEAAKKLQ
Sbjct: 26 ESARDDM--MACVAALEAALLPCLPARELQAVDRSLQSSHQIDVERHARDFMEAAKKLQS 83
Query: 80 YFISLQREDQPTEVEMLRKVI 100
YFISLQRED+P+ EMLRK I
Sbjct: 84 YFISLQREDRPSTEEMLRKDI 104
>gi|226492024|ref|NP_001143902.1| uncharacterized protein LOC100276705 [Zea mays]
gi|195629348|gb|ACG36315.1| hypothetical protein [Zea mays]
gi|413948788|gb|AFW81437.1| hypothetical protein ZEAMMB73_104324 [Zea mays]
Length = 145
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 66/76 (86%)
Query: 27 NMISCVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQR 86
+M++CV ALEAALLPCLPARELQA+DRS SHQIDVERHARDFMEAAKKLQ YFISLQR
Sbjct: 30 DMLACVAALEAALLPCLPARELQAVDRSLQSSHQIDVERHARDFMEAAKKLQSYFISLQR 89
Query: 87 EDQPTEVEMLRKVIYS 102
E+ P+ EMLRK I +
Sbjct: 90 EEPPSAEEMLRKEITT 105
>gi|413948012|gb|AFW80661.1| hypothetical protein ZEAMMB73_826296 [Zea mays]
Length = 90
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 62/73 (84%)
Query: 28 MISCVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQRE 87
M++C+ ALEA LLPCL AR LQ++DRS SHQIDVERHARDFMEAAKKLQ YFISLQRE
Sbjct: 1 MLACMAALEATLLPCLLARSLQSVDRSLQSSHQIDVERHARDFMEAAKKLQSYFISLQRE 60
Query: 88 DQPTEVEMLRKVI 100
DQPT EMLRK I
Sbjct: 61 DQPTAEEMLRKFI 73
>gi|294464443|gb|ADE77733.1| unknown [Picea sitchensis]
Length = 131
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/74 (75%), Positives = 65/74 (87%)
Query: 27 NMISCVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQR 86
++++ VTALE ALLPCLPARELQAIDRS PSHQIDVERHARDFMEAAKKLQLYFI LQ
Sbjct: 16 DILNLVTALETALLPCLPARELQAIDRSAQPSHQIDVERHARDFMEAAKKLQLYFIRLQH 75
Query: 87 EDQPTEVEMLRKVI 100
+++P++ E LRK I
Sbjct: 76 QNKPSKEEALRKEI 89
>gi|168039990|ref|XP_001772479.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676276|gb|EDQ62761.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 149
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 60/74 (81%)
Query: 27 NMISCVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQR 86
+++S V +L+A+LLPCLPARELQA+DRS HPSHQ+DVERHA DFMEAAK LQLYFI Q
Sbjct: 34 DLLSLVASLDASLLPCLPARELQAVDRSTHPSHQVDVERHAADFMEAAKTLQLYFIRAQH 93
Query: 87 EDQPTEVEMLRKVI 100
QP+ E L+K I
Sbjct: 94 RHQPSREEALKKEI 107
>gi|302754956|ref|XP_002960902.1| hypothetical protein SELMODRAFT_74394 [Selaginella moellendorffii]
gi|300171841|gb|EFJ38441.1| hypothetical protein SELMODRAFT_74394 [Selaginella moellendorffii]
Length = 121
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 59/71 (83%)
Query: 30 SCVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQREDQ 89
S V +L+A LLPCLPARELQA DRS HPSH +DVERHAR+FMEAAK+LQ++FI +Q E Q
Sbjct: 9 SWVASLDATLLPCLPARELQAADRSTHPSHHVDVERHAREFMEAAKQLQVFFIRVQHEHQ 68
Query: 90 PTEVEMLRKVI 100
P + E+L+K I
Sbjct: 69 PPKEELLKKEI 79
>gi|302767380|ref|XP_002967110.1| hypothetical protein SELMODRAFT_87665 [Selaginella moellendorffii]
gi|300165101|gb|EFJ31709.1| hypothetical protein SELMODRAFT_87665 [Selaginella moellendorffii]
Length = 121
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 59/71 (83%)
Query: 30 SCVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQREDQ 89
S V +L+A LLPCLPARELQA DRS HPSH +DVERHAR+FMEAAK+LQ++FI +Q E Q
Sbjct: 9 SWVASLDATLLPCLPARELQAADRSTHPSHHVDVERHAREFMEAAKQLQVFFIRVQHEHQ 68
Query: 90 PTEVEMLRKVI 100
P + E+L+K I
Sbjct: 69 PPKEELLKKEI 79
>gi|222630250|gb|EEE62382.1| hypothetical protein OsJ_17171 [Oryza sativa Japonica Group]
Length = 202
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 62/97 (63%), Gaps = 25/97 (25%)
Query: 27 NMISCVTALEAALLPCLPARELQAIDRSPHPSHQI------------------------- 61
++++CV L+AALLPCLPAR+LQA RS SH+I
Sbjct: 31 DIMACVAPLKAALLPCLPARDLQARRRSLQSSHEITWDFSDIDPAVSPSLLPLPPSFPRV 90
Query: 62 DVERHARDFMEAAKKLQLYFISLQREDQPTEVEMLRK 98
DVERHARDFMEAAKKLQ YFISLQRED+P+ EMLRK
Sbjct: 91 DVERHARDFMEAAKKLQSYFISLQREDRPSTEEMLRK 127
>gi|9758152|dbj|BAB08709.1| unnamed protein product [Arabidopsis thaliana]
Length = 167
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 29/34 (85%), Gaps = 1/34 (2%)
Query: 29 ISCVTA-LEAALLPCLPARELQAIDRSPHPSHQI 61
++CVT LEAALLP LPA+ELQ I RSPHPSHQI
Sbjct: 1 MACVTTILEAALLPSLPAKELQGIGRSPHPSHQI 34
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,503,379,787
Number of Sequences: 23463169
Number of extensions: 51566797
Number of successful extensions: 123525
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 123498
Number of HSP's gapped (non-prelim): 24
length of query: 106
length of database: 8,064,228,071
effective HSP length: 74
effective length of query: 32
effective length of database: 6,327,953,565
effective search space: 202494514080
effective search space used: 202494514080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)