BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034026
         (106 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LFA5|MED28_ARATH Mediator of RNA polymerase II transcription subunit 28
           OS=Arabidopsis thaliana GN=MED28 PE=1 SV=1
          Length = 156

 Score =  126 bits (316), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 65/91 (71%), Positives = 77/91 (84%), Gaps = 6/91 (6%)

Query: 16  LQSPQ-PSRDDMN----MISCVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDF 70
           ++SP+ PS +  N    +++CVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDF
Sbjct: 24  IRSPETPSNNQNNDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDF 83

Query: 71  MEAAKKLQLYFISLQREDQ-PTEVEMLRKVI 100
           MEAAKKLQLYF+ L+RED+ P+  E L+K I
Sbjct: 84  MEAAKKLQLYFMGLKREDRAPSRAESLKKDI 114


>sp|A0PY64|SYN_CLONN Asparagine--tRNA ligase OS=Clostridium novyi (strain NT) GN=asnS
           PE=3 SV=1
          Length = 463

 Score = 31.2 bits (69), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 68  RDFMEAAKKLQLYFISLQREDQPTEVEMLRKVI 100
           +D+M+ A+++  Y I+  RE+ P E+E   K I
Sbjct: 257 KDYMDVAEQMVKYIINYVRENAPEEMEFFNKFI 289


>sp|B6ZK76|IRL1A_DANRE Interleukin-1 receptor accessory protein-like 1-A OS=Danio rerio
           GN=il1rapl1a PE=2 SV=1
          Length = 701

 Score = 31.2 bits (69), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 3   QQAAADHQQLDSPLQSPQPSRDDMNMISCVTALEAALLPCLPARELQAIDRSPHPSHQID 62
           QQ   +H  LD+    P      ++ IS  TA  AAL P  P  EL+   RS + SH + 
Sbjct: 569 QQTITNHA-LDTSEPGPFADLQTVSAISMATATSAALAPAHP--ELRPSLRSSYRSHSLA 625

Query: 63  VERHA 67
            ++H+
Sbjct: 626 RQKHS 630


>sp|Q9WVL5|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1
           PE=2 SV=1
          Length = 950

 Score = 29.3 bits (64), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 54  SPHPSHQIDVERHARDFMEAAKKLQLYFI---SLQREDQPTEVEML 96
           SP PS  + VE  AR  +   +++ LYF+    L  E + T VE L
Sbjct: 782 SPMPSQSMSVEETARKLLSNLREILLYFVPEFQLSSEFECTSVEEL 827


>sp|A9KNS9|END4_CLOPH Probable endonuclease 4 OS=Clostridium phytofermentans (strain ATCC
           700394 / DSM 18823 / ISDg) GN=nfo PE=3 SV=1
          Length = 300

 Score = 28.9 bits (63), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 66  HARDFMEAAKKLQLYFISLQREDQPT------EVEMLRKVIYSPR 104
           H  DF+E  K L+  ++SL  E + +      E+EMLR  ++ P+
Sbjct: 247 HHSDFIEVPKILETPYVSLPNEKEKSLPPYRYEIEMLRNSVFDPQ 291


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.131    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,945,203
Number of Sequences: 539616
Number of extensions: 1253621
Number of successful extensions: 3160
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3158
Number of HSP's gapped (non-prelim): 8
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)