Query 034026
Match_columns 106
No_of_seqs 12 out of 14
Neff 1.5
Searched_HMMs 46136
Date Fri Mar 29 08:57:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03437 BtpA: BtpA family; I 54.5 6.9 0.00015 30.9 1.2 18 58-76 237-254 (254)
2 PF08708 PriCT_1: Primase C te 49.5 15 0.00033 22.4 2.0 28 28-55 38-65 (71)
3 PF07165 DUF1397: Protein of u 48.3 18 0.00039 27.4 2.6 26 26-51 78-103 (213)
4 smart00707 RPEL Repeat in Dros 43.5 13 0.00028 21.1 0.9 17 87-103 8-24 (26)
5 KOG0201 Serine/threonine prote 38.1 31 0.00068 30.5 2.8 68 26-100 192-265 (467)
6 PF11594 Med28: Mediator compl 32.7 61 0.0013 23.5 3.2 24 61-84 4-27 (106)
7 COG1422 Predicted membrane pro 30.2 92 0.002 24.7 4.0 38 61-99 69-106 (201)
8 COG0434 SgcQ Predicted TIM-bar 29.1 44 0.00094 27.7 2.1 52 25-77 191-260 (263)
9 PF02755 RPEL: RPEL repeat; I 27.2 32 0.0007 19.1 0.8 16 87-102 8-23 (26)
10 PF12734 CYSTM: Cysteine-rich 27.0 95 0.0021 18.2 2.8 25 11-35 3-27 (37)
11 PRK09269 chorismate mutase; Pr 26.8 96 0.0021 23.7 3.5 56 31-86 50-112 (193)
12 cd00056 ENDO3c endonuclease II 24.5 1.8E+02 0.0038 19.5 4.2 56 40-106 36-91 (158)
13 PF15559 DUF4660: Domain of un 22.2 35 0.00077 24.9 0.4 9 59-67 56-64 (108)
14 PF09611 Cas_Csy1: CRISPR-asso 21.2 97 0.0021 26.0 2.8 50 36-85 221-272 (378)
15 PF10109 FluMu_gp41: Mu-like p 20.9 94 0.002 18.7 2.1 31 37-81 51-81 (82)
16 COG0819 TenA Putative transcri 20.6 1.7E+02 0.0037 22.6 3.9 65 33-97 126-197 (218)
17 PF05482 Serendipity_A: Serend 20.2 97 0.0021 27.9 2.8 43 27-78 317-363 (552)
18 PF13811 DUF4186: Domain of un 20.1 71 0.0015 23.4 1.6 11 62-72 34-44 (111)
19 TIGR02564 cas_Csy1 CRISPR-asso 20.0 1.2E+02 0.0027 25.8 3.2 44 36-85 221-271 (384)
No 1
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=54.53 E-value=6.9 Score=30.93 Aligned_cols=18 Identities=56% Similarity=0.811 Sum_probs=14.8
Q ss_pred CCchhHHhhHHHHHHHHHH
Q 034026 58 SHQIDVERHARDFMEAAKK 76 (106)
Q Consensus 58 SHqidveRhArdFMEAAKk 76 (106)
..-||.|| +|.||+++||
T Consensus 237 ~n~VD~~R-v~~fm~~v~~ 254 (254)
T PF03437_consen 237 ENPVDPER-VRRFMEAVKK 254 (254)
T ss_pred CCcCCHHH-HHHHHHHhhC
Confidence 44589887 8999999986
No 2
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=49.55 E-value=15 Score=22.36 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhcCCCchhhhhhhcCCC
Q 034026 28 MISCVTALEAALLPCLPARELQAIDRSP 55 (106)
Q Consensus 28 ~~~cV~aLeaaLLPcLPAReLQaidRS~ 55 (106)
+.+.+..+...+-|-||.+|+.+|-||.
T Consensus 38 v~~~~~~~N~~~~~PL~~~Ev~~i~kSi 65 (71)
T PF08708_consen 38 VLSLAQAINSNFSPPLPESEVKAIAKSI 65 (71)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 5566666666779999999999998874
No 3
>PF07165 DUF1397: Protein of unknown function (DUF1397); InterPro: IPR009832 This entry consists of several insect specific 27 kDa Haemolymph glycoprotein precursors. The function of this family is unknown [].
Probab=48.34 E-value=18 Score=27.45 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHhhcCCCchhhhhhh
Q 034026 26 MNMISCVTALEAALLPCLPARELQAI 51 (106)
Q Consensus 26 ~d~~~cV~aLeaaLLPcLPAReLQai 51 (106)
...+.|+..+-.++.|||+..|..-.
T Consensus 78 ~~~~~C~~~f~~~v~~Cl~~ee~~~~ 103 (213)
T PF07165_consen 78 PQAKECFDPFTEKVKPCLDEEEKEIL 103 (213)
T ss_pred HHHHHHHHHHHhhcccCCCHHHHHHH
Confidence 35789999999999999999886543
No 4
>smart00707 RPEL Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2.
Probab=43.47 E-value=13 Score=21.08 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=14.1
Q ss_pred cCCCcHHHHHHHHhcCC
Q 034026 87 EDQPTEVEMLRKVIYSP 103 (106)
Q Consensus 87 e~~Ps~~E~LrKeia~~ 103 (106)
..+|+.+|..++.|-.+
T Consensus 8 ~~RP~~eeLv~r~IL~~ 24 (26)
T smart00707 8 SQRPTREELEERNILKE 24 (26)
T ss_pred HcCCCHHHHHHccCCCC
Confidence 46899999999998654
No 5
>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=38.13 E-value=31 Score=30.46 Aligned_cols=68 Identities=28% Similarity=0.335 Sum_probs=54.1
Q ss_pred hhHHHH-HHHHHHh-----hcCCCchhhhhhhcCCCCCCCchhHHhhHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHH
Q 034026 26 MNMISC-VTALEAA-----LLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQREDQPTEVEMLRKV 99 (106)
Q Consensus 26 ~d~~~c-V~aLeaa-----LLPcLPAReLQaidRS~hpSHqidveRhArdFMEAAKkLQ~yFi~lqre~~Ps~~E~LrKe 99 (106)
-||.++ ++++|-| .-=|=|-|=|.-|-++.-|.-+.+.-+-.+||||++.+. --+++||..|.|+-+
T Consensus 192 ADIWSLGITaiEla~GePP~s~~hPmrvlflIpk~~PP~L~~~~S~~~kEFV~~CL~k-------~P~~RpsA~~LLKh~ 264 (467)
T KOG0201|consen 192 ADIWSLGITAIELAKGEPPHSKLHPMRVLFLIPKSAPPRLDGDFSPPFKEFVEACLDK-------NPEFRPSAKELLKHK 264 (467)
T ss_pred hhhhhhhHHHHHHhcCCCCCcccCcceEEEeccCCCCCccccccCHHHHHHHHHHhhc-------CcccCcCHHHHhhhH
Confidence 456655 4567655 223778999999999999999999999999999999764 467899999999865
Q ss_pred h
Q 034026 100 I 100 (106)
Q Consensus 100 i 100 (106)
.
T Consensus 265 F 265 (467)
T KOG0201|consen 265 F 265 (467)
T ss_pred H
Confidence 3
No 6
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=32.68 E-value=61 Score=23.45 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=21.3
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHh
Q 034026 61 IDVERHARDFMEAAKKLQLYFISL 84 (106)
Q Consensus 61 idveRhArdFMEAAKkLQ~yFi~l 84 (106)
.+||-+.-.|.+.|++.-.||+.-
T Consensus 4 t~vEq~~~~FlD~aRq~e~~FlqK 27 (106)
T PF11594_consen 4 TYVEQLIQSFLDVARQMEAFFLQK 27 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999853
No 7
>COG1422 Predicted membrane protein [Function unknown]
Probab=30.15 E-value=92 Score=24.72 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=30.7
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHH
Q 034026 61 IDVERHARDFMEAAKKLQLYFISLQREDQPTEVEMLRKV 99 (106)
Q Consensus 61 idveRhArdFMEAAKkLQ~yFi~lqre~~Ps~~E~LrKe 99 (106)
||.||=. ..-+-+|.+|.+|.-.|++...-+-|-|+++
T Consensus 69 iD~ekm~-~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~ 106 (201)
T COG1422 69 IDQEKMK-ELQKMMKEFQKEFREAQESGDMKKLKKLQEK 106 (201)
T ss_pred ccHHHHH-HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8989854 4667889999999999999888777777653
No 8
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=29.08 E-value=44 Score=27.72 Aligned_cols=52 Identities=31% Similarity=0.369 Sum_probs=31.6
Q ss_pred chhHHHHHHHHHHhhcCCCc--------hh-hhhhhc---------CCCCCCCchhHHhhHHHHHHHHHHH
Q 034026 25 DMNMISCVTALEAALLPCLP--------AR-ELQAID---------RSPHPSHQIDVERHARDFMEAAKKL 77 (106)
Q Consensus 25 ~~d~~~cV~aLeaaLLPcLP--------AR-eLQaid---------RS~hpSHqidveRhArdFMEAAKkL 77 (106)
..|.-...++-+++=+|-|= .. -|+..| +.--.-..||.|| +|.||++||.+
T Consensus 191 ~~d~~el~~a~~~~~~pvlvGSGv~~eN~~~~l~~adG~IvgT~lK~~G~~~n~VD~~R-v~~~v~~a~~~ 260 (263)
T COG0434 191 PPDLEELKLAKEAVDTPVLVGSGVNPENIEELLKIADGVIVGTSLKKGGVTWNPVDLER-VRRFVEAARRL 260 (263)
T ss_pred CCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHHHcCceEEEEEEccCCEecCccCHHH-HHHHHHHHHHh
Confidence 33455555666666666541 22 244433 2223445799999 78999999986
No 9
>PF02755 RPEL: RPEL repeat; InterPro: IPR004018 The RPEL repeat is named after four conserved amino acids it contains. The function of the RPEL repeat is unknown however it might be a DNA binding repeat based on the observation that Q9VZY2 from SWISSPROT contains a SAP domain that is also implicated in DNA binding.; PDB: 2YJE_M 2V52_M 2YJF_M 2V51_E.
Probab=27.21 E-value=32 Score=19.13 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=9.9
Q ss_pred cCCCcHHHHHHHHhcC
Q 034026 87 EDQPTEVEMLRKVIYS 102 (106)
Q Consensus 87 e~~Ps~~E~LrKeia~ 102 (106)
..+|+.+|..+|.|--
T Consensus 8 ~~RP~~~eLv~r~IL~ 23 (26)
T PF02755_consen 8 SQRPTREELVERNILK 23 (26)
T ss_dssp HT---HHHHHHTTSS-
T ss_pred hcCCCHHHHHHcCCCC
Confidence 3689999999998854
No 10
>PF12734 CYSTM: Cysteine-rich TM module stress tolerance
Probab=26.97 E-value=95 Score=18.20 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=11.6
Q ss_pred hcCCCCCCCCCCCCchhHHHHHHHH
Q 034026 11 QLDSPLQSPQPSRDDMNMISCVTAL 35 (106)
Q Consensus 11 ~~~~p~~~~~p~~~~~d~~~cV~aL 35 (106)
++.-++++++..+++.=+..|.+||
T Consensus 3 p~~Y~~~~~~~~~~~g~l~gClaaL 27 (37)
T PF12734_consen 3 PPGYPQQPPPQSGGDGCLAGCLAAL 27 (37)
T ss_pred CCCCCCCCCCCCCCCChHHHHHHHH
Confidence 3444444444344444355555554
No 11
>PRK09269 chorismate mutase; Provisional
Probab=26.82 E-value=96 Score=23.67 Aligned_cols=56 Identities=30% Similarity=0.325 Sum_probs=36.5
Q ss_pred HHHHHHHh-hcCCC-chhhhhhhcCCCCCC--Cchh---HHhhHHHHHHHHHHHHHHHHHhcc
Q 034026 31 CVTALEAA-LLPCL-PARELQAIDRSPHPS--HQID---VERHARDFMEAAKKLQLYFISLQR 86 (106)
Q Consensus 31 cV~aLeaa-LLPcL-PAReLQaidRS~hpS--Hqid---veRhArdFMEAAKkLQ~yFi~lqr 86 (106)
=|+..+.. =+|-. |.||-+-+++...-. +.+| |+.--++-|+++|.+|--++..-+
T Consensus 50 ~VA~~K~~~~~pI~Dp~RE~~VL~~v~~~A~~~gLdp~~v~~iF~~~I~aSk~iQ~~~~a~W~ 112 (193)
T PRK09269 50 PVALSKWDSGKPIEDPPREAQVLANVEAQAPAHGVDPDYVRRFFRDQIEANKLVQYALLARWR 112 (193)
T ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 24443 889988777654322 5555 677788889999999987766533
No 12
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=24.51 E-value=1.8e+02 Score=19.52 Aligned_cols=56 Identities=25% Similarity=0.253 Sum_probs=39.2
Q ss_pred cCCCchhhhhhhcCCCCCCCchhHHhhHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHhcCCCCC
Q 034026 40 LPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQREDQPTEVEMLRKVIYSPRGI 106 (106)
Q Consensus 40 LPcLPAReLQaidRS~hpSHqidveRhArdFMEAAKkLQ~yFi~lqre~~Ps~~E~LrKeia~~~~~ 106 (106)
|-++|-.||..+.++.. ..+=|+.+.+.|+.+...|.++-. +. +.+++++..=+||
T Consensus 36 l~~~~~~~l~~~~~~~G------~~~kA~~i~~~a~~~~~~~~~~~~-~~----~~~~~~L~~l~GI 91 (158)
T cd00056 36 LAAADEEELRELIRSLG------YRRKAKYLKELARAIVEGFGGLVL-DD----PDAREELLALPGV 91 (158)
T ss_pred HHCCCHHHHHHHHHhcC------hHHHHHHHHHHHHHHHHHcCCccC-CC----cccHHHHHcCCCC
Confidence 44567788887777654 357899999999999998887655 22 3355555555564
No 13
>PF15559 DUF4660: Domain of unknown function (DUF4660)
Probab=22.18 E-value=35 Score=24.93 Aligned_cols=9 Identities=56% Similarity=0.682 Sum_probs=7.5
Q ss_pred CchhHHhhH
Q 034026 59 HQIDVERHA 67 (106)
Q Consensus 59 HqidveRhA 67 (106)
-|||||||+
T Consensus 56 KqIDWe~~v 64 (108)
T PF15559_consen 56 KQIDWERRV 64 (108)
T ss_pred cccchhHhh
Confidence 479999985
No 14
>PF09611 Cas_Csy1: CRISPR-associated protein (Cas_Csy1); InterPro: IPR013397 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.
Probab=21.25 E-value=97 Score=26.00 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=27.1
Q ss_pred HHhhcCCCchhhhhhhcCCCCCCCchhH--HhhHHHHHHHHHHHHHHHHHhc
Q 034026 36 EAALLPCLPARELQAIDRSPHPSHQIDV--ERHARDFMEAAKKLQLYFISLQ 85 (106)
Q Consensus 36 eaaLLPcLPAReLQaidRS~hpSHqidv--eRhArdFMEAAKkLQ~yFi~lq 85 (106)
.+-||||||..=-+...|.|.-...+=. -.-.+++-+--+.|+.|+.+-.
T Consensus 221 ~~yLL~SlPP~~~~~~~r~P~~~~s~F~~~~~~~~~~~~~~~~L~~~l~~~~ 272 (378)
T PF09611_consen 221 KNYLLPSLPPQWKSRDIRPPLKHKSIFFRRSLFYYRVRDLFRQLHRFLKSDK 272 (378)
T ss_pred eeeccCCCCCcCccccccCCCCccccccccccchHHHHHHHHHHHHHHhcCC
Confidence 4679999999766566666622222111 1223334444456666665443
No 15
>PF10109 FluMu_gp41: Mu-like prophage FluMu protein gp41; InterPro: IPR019289 Members of this family of prokaryotic proteins include various Gp41 proteins and related sequences [].
Probab=20.89 E-value=94 Score=18.73 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=24.4
Q ss_pred HhhcCCCchhhhhhhcCCCCCCCchhHHhhHHHHHHHHHHHHHHH
Q 034026 37 AALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYF 81 (106)
Q Consensus 37 aaLLPcLPAReLQaidRS~hpSHqidveRhArdFMEAAKkLQ~yF 81 (106)
.+.+-+||..++...+ ++||.+..+.+..||
T Consensus 51 ~a~l~gl~~~~l~~L~--------------~~D~~~l~~~~~~Fl 81 (82)
T PF10109_consen 51 IARLTGLPPEDLDQLD--------------ARDYNRLQEAVNGFL 81 (82)
T ss_pred HHHhcCCCHHHHHcCC--------------HHHHHHHHHHHHHhc
Confidence 4455679999987764 789999999988775
No 16
>COG0819 TenA Putative transcription activator [Transcription]
Probab=20.55 E-value=1.7e+02 Score=22.56 Aligned_cols=65 Identities=37% Similarity=0.512 Sum_probs=39.7
Q ss_pred HHHHHhhcCCCc-----hhhhhhhc-CCCCCCCchhHHhhHH-HHHHHHHHHHHHHHHhcccCCCcHHHHHH
Q 034026 33 TALEAALLPCLP-----ARELQAID-RSPHPSHQIDVERHAR-DFMEAAKKLQLYFISLQREDQPTEVEMLR 97 (106)
Q Consensus 33 ~aLeaaLLPcLP-----AReLQaid-RS~hpSHqidveRhAr-dFMEAAKkLQ~yFi~lqre~~Ps~~E~Lr 97 (106)
.-+-|||+||+= +..+.+.. +|+++-.|==++-|+- +|.+++..+---.=++-....|..-+.|+
T Consensus 126 ~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~ef~~~v~~~~~~ld~~~~~~~~~~~~~l~ 197 (218)
T COG0819 126 AELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASEEFQEAVEELEALLDSLAENSSEEELEKLK 197 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 345688999974 34455544 4777777754555654 66666666665555555555555444443
No 17
>PF05482 Serendipity_A: Serendipity locus alpha protein (SRY-A); InterPro: IPR008837 The Drosophila serendipity alpha (sry alpha) gene is specifically transcribed at the blastoderm stage, from nuclear cycle 11 to the onset of gastrulation, in all somatic nuclei []. SRY-A is required for the cellularisation of the embryo and is involved in the localisation of the actin filaments just prior to and during plasma membrane invagination [].; GO: 0007349 cellularization, 0005737 cytoplasm, 0016020 membrane
Probab=20.24 E-value=97 Score=27.93 Aligned_cols=43 Identities=30% Similarity=0.641 Sum_probs=28.8
Q ss_pred hHHHHHH---HHHHhhcCCCchhhhhhhcCCCCCCCchhH-HhhHHHHHHHHHHHH
Q 034026 27 NMISCVT---ALEAALLPCLPARELQAIDRSPHPSHQIDV-ERHARDFMEAAKKLQ 78 (106)
Q Consensus 27 d~~~cV~---aLeaaLLPcLPAReLQaidRS~hpSHqidv-eRhArdFMEAAKkLQ 78 (106)
-|-+|.| +||+.|.|+|= ++.|....|+.++ |.| |-|..+|++
T Consensus 317 ~IRSCLASlEsLDt~LIPalq------l~~s~~~~~hs~iLe~H---f~eE~~~fr 363 (552)
T PF05482_consen 317 IIRSCLASLESLDTCLIPALQ------LPDSKSSDHHSEILEQH---FNEEMNKFR 363 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------hhccccchhhHHHHHHH---HHHHHHHHH
Confidence 3667877 55677888764 4667777776664 666 666666665
No 18
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=20.13 E-value=71 Score=23.42 Aligned_cols=11 Identities=45% Similarity=0.945 Sum_probs=9.1
Q ss_pred hHHhhHHHHHH
Q 034026 62 DVERHARDFME 72 (106)
Q Consensus 62 dveRhArdFME 72 (106)
-|..||+||..
T Consensus 34 ~I~~Ha~dfi~ 44 (111)
T PF13811_consen 34 TIREHARDFIA 44 (111)
T ss_pred HHHHHHHHHHH
Confidence 37899999984
No 19
>TIGR02564 cas_Csy1 CRISPR-associated protein, Csy1 family. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.
Probab=20.05 E-value=1.2e+02 Score=25.84 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=24.2
Q ss_pred HHhhcCCCchhhhhhhcCCCCCCCc-------hhHHhhHHHHHHHHHHHHHHHHHhc
Q 034026 36 EAALLPCLPARELQAIDRSPHPSHQ-------IDVERHARDFMEAAKKLQLYFISLQ 85 (106)
Q Consensus 36 eaaLLPcLPAReLQaidRS~hpSHq-------idveRhArdFMEAAKkLQ~yFi~lq 85 (106)
.+-||||||..= +..+| .|.|. ....+.+++.. .+|+.|+.+++
T Consensus 221 ~~yLL~SlPP~w-~~~~~--~p~~~~s~F~~~~~~~~~~~~~~---~~L~~~l~~v~ 271 (384)
T TIGR02564 221 RSYLLPSLPPVW-KNIDK--PPIKFSSILESRFFSKSLARRTL---DQLKILLLVVK 271 (384)
T ss_pred eeeeecCCCCcC-ccccC--CCCCCcchhhhcccccHHHHHHH---HHHHHHHHhcc
Confidence 467999999863 33332 23332 12224455444 46777776554
Done!