Query 034026
Match_columns 106
No_of_seqs 12 out of 14
Neff 1.5
Searched_HMMs 29240
Date Mon Mar 25 15:05:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034026.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034026hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jli_A Interleukin 3, multi-CS 19.8 1.2E+02 0.0041 21.4 3.8 39 38-84 67-105 (112)
2 3caz_A BAR protein; thermo-aci 19.0 1.1E+02 0.0036 24.5 3.7 32 61-101 91-122 (294)
3 1eaz_A Tandem PH domain contai 19.0 67 0.0023 18.8 2.0 17 24-40 95-111 (125)
4 1btn_A Beta-spectrin; signal t 18.2 71 0.0024 18.1 2.0 15 24-38 92-106 (106)
5 1m7v_A Nitric oxide synthase; 18.2 64 0.0022 26.5 2.3 39 58-102 2-41 (363)
6 2dnx_A Syntaxin-12; snare, HAB 16.6 98 0.0034 20.5 2.6 21 60-80 90-110 (130)
7 2rsg_A Collagen type IV alpha- 15.8 71 0.0024 18.1 1.6 15 24-38 78-92 (94)
8 2l3o_A Interleukin 3; cytokine 15.7 47 0.0016 24.0 0.9 38 38-85 73-110 (127)
9 1wgq_A FYVE, rhogef and PH dom 15.5 1.1E+02 0.0039 17.7 2.4 18 24-41 87-104 (109)
10 2wj6_A 1H-3-hydroxy-4-oxoquina 14.9 1.4E+02 0.0049 19.7 3.1 30 49-78 62-91 (276)
No 1
>1jli_A Interleukin 3, multi-CSF; hematopoietic growth factor, colony-stimulating factor, cytokine; NMR {Homo sapiens} SCOP: a.26.1.2
Probab=19.83 E-value=1.2e+02 Score=21.41 Aligned_cols=39 Identities=31% Similarity=0.616 Sum_probs=19.6
Q ss_pred hhcCCCchhhhhhhcCCCCCCCchhHHhhHHHHHHHHHHHHHHHHHh
Q 034026 38 ALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISL 84 (106)
Q Consensus 38 aLLPcLPAReLQaidRS~hpSHqidveRhArdFMEAAKkLQ~yFi~l 84 (106)
-|+||||.- .+-+..++-.|- |+---|| -|||.-|.+-|
T Consensus 67 ~l~pcLPta----t~~pt~~pI~I~-~~dl~DF---r~KL~fYL~~L 105 (112)
T 1jli_A 67 NLLPCLPLA----TAAPTRHPIHIK-DGDWNEF---RRKLTFYLKTL 105 (112)
T ss_dssp HHGGGSCCT----TSSCCSCCCCCC-SSCHHHH---HHHHHHHHHHH
T ss_pred hccccCCcC----cCCCCCCCeecc-cCCHHHH---HHHHHHHHHHH
Confidence 479999973 333333333330 2222344 35666665544
No 2
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=18.99 E-value=1.1e+02 Score=24.49 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=25.0
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHhc
Q 034026 61 IDVERHARDFMEAAKKLQLYFISLQREDQPTEVEMLRKVIY 101 (106)
Q Consensus 61 idveRhArdFMEAAKkLQ~yFi~lqre~~Ps~~E~LrKeia 101 (106)
+|+-.|.|+.-.-..|+|-||-- -|.||++++
T Consensus 91 ldihkhgreiarllekiqkyfQ~---------IEtlK~ql~ 122 (294)
T 3caz_A 91 LDIHKHGREIARLLEKIQKYRQE---------IEEIKKEYK 122 (294)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHH---------HHHHHHHHH
T ss_pred hhHHhhhHHHHHHHHHHHHHHHH---------HHHHHHHHh
Confidence 56678999999999999999954 366776653
No 3
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=18.99 E-value=67 Score=18.84 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=13.8
Q ss_pred CchhHHHHHHHHHHhhc
Q 034026 24 DDMNMISCVTALEAALL 40 (106)
Q Consensus 24 ~~~d~~~cV~aLeaaLL 40 (106)
..+++..||.+|..++.
T Consensus 95 s~~e~~~W~~al~~~i~ 111 (125)
T 1eaz_A 95 SPEEMHSWIKAVSGAIV 111 (125)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45679999999998874
No 4
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=18.19 E-value=71 Score=18.14 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=11.7
Q ss_pred CchhHHHHHHHHHHh
Q 034026 24 DDMNMISCVTALEAA 38 (106)
Q Consensus 24 ~~~d~~~cV~aLeaa 38 (106)
..++|..||.+|.+|
T Consensus 92 s~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 92 DDEEMNTWIQAISSA 106 (106)
T ss_dssp SHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhcC
Confidence 356789999998865
No 5
>1m7v_A Nitric oxide synthase; pterin oxygenase, bacteria, heme, oxidoreductase; HET: ARG HEM THG; 1.95A {Bacillus subtilis} SCOP: d.174.1.1 PDB: 2fbz_X* 2fc1_A* 1m7z_A* 2fc2_A* 2an0_A* 2amo_A* 2an2_A*
Probab=18.19 E-value=64 Score=26.51 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=24.8
Q ss_pred CCchhHHhhHHHHHHHHHHHHHHHHHhcccCC-CcHHHHHHHHhcC
Q 034026 58 SHQIDVERHARDFMEAAKKLQLYFISLQREDQ-PTEVEMLRKVIYS 102 (106)
Q Consensus 58 SHqidveRhArdFMEAAKkLQ~yFi~lqre~~-Ps~~E~LrKeia~ 102 (106)
||--.|-.+|++| |..||.++.+++. ..+-+..++||..
T Consensus 2 ~~~~~l~~eA~~F------i~~~y~e~~~~~~~~~Rl~ev~~eI~~ 41 (363)
T 1m7v_A 2 SHMEILWNEAKAF------IAECYQELGKEEEVKDRLDSIKSEIDR 41 (363)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH------HHHHHHhcCCchHHHHHHHHHHHHHHc
Confidence 4555666777777 5689999988422 2344455677753
No 6
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=16.56 E-value=98 Score=20.49 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=17.1
Q ss_pred chhHHhhHHHHHHHHHHHHHH
Q 034026 60 QIDVERHARDFMEAAKKLQLY 80 (106)
Q Consensus 60 qidveRhArdFMEAAKkLQ~y 80 (106)
-+-.||=++||-.+.+..|.+
T Consensus 90 k~q~~KL~~dF~~~L~~FQ~~ 110 (130)
T 2dnx_A 90 RLQKERLMNDFSAALNNFQAV 110 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999998887754
No 7
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=15.77 E-value=71 Score=18.14 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=11.6
Q ss_pred CchhHHHHHHHHHHh
Q 034026 24 DDMNMISCVTALEAA 38 (106)
Q Consensus 24 ~~~d~~~cV~aLeaa 38 (106)
..+|+..||.||+.|
T Consensus 78 s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 78 DPDHRQQWIDAIEQH 92 (94)
T ss_dssp SSCCTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 345688999999876
No 8
>2l3o_A Interleukin 3; cytokine; NMR {Mus musculus}
Probab=15.71 E-value=47 Score=24.00 Aligned_cols=38 Identities=39% Similarity=0.701 Sum_probs=24.4
Q ss_pred hhcCCCchhhhhhhcCCCCCCCchhHHhhHHHHHHHHHHHHHHHHHhc
Q 034026 38 ALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFISLQ 85 (106)
Q Consensus 38 aLLPcLPAReLQaidRS~hpSHqidveRhArdFMEAAKkLQ~yFi~lq 85 (106)
-|.||||.-- --|..++-.| +---|| -|||.-|.+-|.
T Consensus 73 ~l~pcLPTat----p~~~~~pI~I---~dl~DF---rkKL~fYL~~L~ 110 (127)
T 2l3o_A 73 KLNACLPTSA----NDSALPGVFI---RDLDDF---RKKLRFYMVHLN 110 (127)
T ss_dssp HHHHHSCCCC----CSSCCCCCCC---SCHHHH---HHHHHHHHHHTC
T ss_pred hccccCCCCC----CcccCCCeee---CcHHHH---HHHHHHHHHHHH
Confidence 4789999854 2234444445 444555 589999988764
No 9
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=15.49 E-value=1.1e+02 Score=17.66 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=14.8
Q ss_pred CchhHHHHHHHHHHhhcC
Q 034026 24 DDMNMISCVTALEAALLP 41 (106)
Q Consensus 24 ~~~d~~~cV~aLeaaLLP 41 (106)
..+++..||.+|..|.++
T Consensus 87 s~~e~~~Wi~al~~a~~~ 104 (109)
T 1wgq_A 87 DAHSTQRWIDAFQEGTVS 104 (109)
T ss_dssp SHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 456799999999998765
No 10
>2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A*
Probab=14.90 E-value=1.4e+02 Score=19.66 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=23.0
Q ss_pred hhhcCCCCCCCchhHHhhHHHHHHHHHHHH
Q 034026 49 QAIDRSPHPSHQIDVERHARDFMEAAKKLQ 78 (106)
Q Consensus 49 QaidRS~hpSHqidveRhArdFMEAAKkLQ 78 (106)
=.-++|..|....+++.+|+|..+..+.|.
T Consensus 62 rGhG~S~~~~~~~~~~~~a~dl~~ll~~l~ 91 (276)
T 2wj6_A 62 RGHGLSPSEVPDFGYQEQVKDALEILDQLG 91 (276)
T ss_dssp TTCSSSCCCCCCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 344678887667889999999888777764
Done!