Query 034027
Match_columns 106
No_of_seqs 106 out of 151
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:58:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3458 NADH:ubiquinone oxidor 100.0 3.2E-43 6.9E-48 261.7 7.3 99 8-106 15-114 (170)
2 PF06747 CHCH: CHCH domain; I 98.2 1.1E-06 2.4E-11 49.5 3.0 32 71-102 1-32 (35)
3 cd00926 Cyt_c_Oxidase_VIb Cyto 97.1 0.00089 1.9E-08 44.5 4.3 41 65-105 17-57 (75)
4 PF02297 COX6B: Cytochrome oxi 96.9 0.0011 2.3E-08 43.7 3.3 38 68-105 9-55 (76)
5 KOG3057 Cytochrome c oxidase, 95.6 0.021 4.4E-07 41.1 4.2 39 67-105 54-92 (112)
6 PF08583 Cmc1: Cytochrome c ox 93.7 0.11 2.4E-06 32.5 3.6 39 65-103 7-46 (69)
7 PF10203 Pet191_N: Cytochrome 81.2 0.41 8.8E-06 31.3 -0.3 48 25-82 1-55 (68)
8 KOG4624 Uncharacterized conser 79.8 3.5 7.6E-05 29.4 4.0 34 69-102 31-65 (104)
9 KOG4695 Uncharacterized conser 77.0 3.8 8.2E-05 29.8 3.5 32 70-101 47-78 (122)
10 PF02320 UCR_hinge: Ubiquinol- 72.5 3 6.6E-05 27.0 1.9 36 49-84 17-54 (65)
11 PF06747 CHCH: CHCH domain; I 69.7 1.6 3.4E-05 24.0 0.1 31 29-59 1-32 (35)
12 KOG4763 Ubiquinol-cytochrome c 68.2 4.1 8.9E-05 27.5 1.9 17 68-84 50-66 (77)
13 KOG4090 Uncharacterized conser 66.2 7.9 0.00017 29.4 3.3 39 63-101 110-148 (157)
14 PF08991 DUF1903: Domain of un 65.8 7.8 0.00017 25.2 2.8 34 70-103 3-36 (67)
15 KOG4618 Uncharacterized conser 65.5 10 0.00022 25.5 3.4 35 49-84 24-58 (74)
16 PRK13687 hypothetical protein; 54.1 6.4 0.00014 27.1 0.9 20 51-70 38-57 (85)
17 PF05676 NDUF_B7: NADH-ubiquin 54.0 22 0.00048 23.1 3.4 59 10-68 1-63 (66)
18 PF05676 NDUF_B7: NADH-ubiquin 49.7 19 0.00042 23.4 2.6 36 67-102 18-53 (66)
19 PF07802 GCK: GCK domain; Int 46.8 31 0.00066 23.1 3.3 33 70-102 13-50 (76)
20 PF08583 Cmc1: Cytochrome c ox 46.1 52 0.0011 20.1 4.1 40 27-86 11-50 (69)
21 PF09857 DUF2084: Uncharacteri 44.8 8.6 0.00019 26.5 0.4 20 51-70 38-57 (85)
22 KOG3477 Putative cytochrome c 44.0 26 0.00055 24.6 2.6 30 70-99 29-58 (97)
23 cd00926 Cyt_c_Oxidase_VIb Cyto 43.5 32 0.00069 22.6 2.9 46 26-82 20-66 (75)
24 COG3811 Uncharacterized protei 37.4 18 0.00039 24.8 1.0 23 48-70 34-57 (85)
25 PF02297 COX6B: Cytochrome oxi 37.2 23 0.0005 22.9 1.5 53 27-80 10-62 (76)
26 PF05051 COX17: Cytochrome C o 34.6 31 0.00068 21.5 1.7 17 70-86 30-46 (49)
27 KOG4114 Cytochrome c oxidase a 31.8 25 0.00055 23.5 1.0 48 26-82 2-56 (73)
28 PF10200 Ndufs5: NADH:ubiquino 29.3 60 0.0013 22.6 2.6 44 24-86 28-71 (96)
29 PF05254 UPF0203: Uncharacteri 27.8 49 0.0011 21.5 1.9 37 49-85 9-52 (68)
30 PLN03079 Uncharacterized prote 25.0 52 0.0011 22.9 1.6 18 68-85 44-61 (91)
31 PF15194 TMEM191C: TMEM191C fa 24.2 67 0.0014 23.3 2.1 30 44-73 12-42 (121)
32 PF11731 Cdd1: Pathogenicity l 22.4 77 0.0017 21.9 2.1 25 44-68 42-71 (93)
33 PF12165 DUF3594: Domain of un 22.4 60 0.0013 24.2 1.6 16 13-28 88-103 (137)
No 1
>KOG3458 consensus NADH:ubiquinone oxidoreductase, NDUFA8/PGIV/19 kDa subunit [Energy production and conversion]
Probab=100.00 E-value=3.2e-43 Score=261.73 Aligned_cols=99 Identities=48% Similarity=0.951 Sum_probs=94.8
Q ss_pred CCCCCCchHHHHHhhHHHHhhchhhhHhhhcccccCCChhhhHhhchhhhhhHHHHHHHHHHHhHHHHHHHHhHhhhcC-
Q 034027 8 SGDPIPSSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYYHT- 86 (106)
Q Consensus 8 ~~~~~~ssa~L~aaa~~ig~~C~~~n~~FMlCK~E~~dP~~CL~EGr~VT~Ca~~~l~~ik~~C~~ef~~y~~CLd~~n- 86 (106)
.+++..|||+|+|+|+|||++|+++|++||+||+|+.|||+||+||++||+|+++|||+||++|.+||++||.|||+++
T Consensus 15 v~ei~lSsavLkA~A~h~g~~Ceken~eFmlcrke~~dPr~cL~eGk~vT~C~l~flr~lkr~C~~e~~~y~~C~dysst 94 (170)
T KOG3458|consen 15 VQEIPLSSAVLKASAKHIGKQCEKENNEFMLCRKEDPDPRACLEEGKAVTRCALDFLRDLKRSCLEEFTKYATCMDYSST 94 (170)
T ss_pred cccccccHHHHHHhhHHHHHhhchhhHHHHhHhhcCCCHHHHHHhchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 4777888899999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CcchhhHHHHHHHHhhCCCC
Q 034027 87 NEFDFCRKEQQAFEKTCPLN 106 (106)
Q Consensus 87 ~~~~~CRk~Q~~fd~~~p~~ 106 (106)
+.|++|||+|++||+++|++
T Consensus 95 ~~f~~Crk~Q~~fdkcv~~k 114 (170)
T KOG3458|consen 95 NEFSHCRKEQEAFDKCVPDK 114 (170)
T ss_pred HHHHHHHHHHHHHHHHhHhh
Confidence 68999999999999999964
No 2
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=98.24 E-value=1.1e-06 Score=49.47 Aligned_cols=32 Identities=34% Similarity=0.790 Sum_probs=29.6
Q ss_pred hHHHHHHHHhHhhhcCCcchhhHHHHHHHHhh
Q 034027 71 CTKEMDEYVGCLYYHTNEFDFCRKEQQAFEKT 102 (106)
Q Consensus 71 C~~ef~~y~~CLd~~n~~~~~CRk~Q~~fd~~ 102 (106)
|..||.+|+.||+.|+++...||++..+|.++
T Consensus 1 C~~e~~~~~~Cl~~n~~~~~~C~~~~~~~~~C 32 (35)
T PF06747_consen 1 CAEEMKAYLACLKENNFDWSKCRKEFKAYKEC 32 (35)
T ss_dssp THHHHHHHHHHHHCH-SSTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCcHHhhHHHHHHHHHH
Confidence 88999999999999999999999999999875
No 3
>cd00926 Cyt_c_Oxidase_VIb Cytochrome c oxidase subunit VIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIb is one of three mammalian subunits that lacks a transmembrane region. It is located on the cytosolic side of the membrane and helps form the dimer interface with the corresponding subunit on the other monomer complex.
Probab=97.11 E-value=0.00089 Score=44.52 Aligned_cols=41 Identities=20% Similarity=0.548 Sum_probs=37.7
Q ss_pred HHHHHHhHHHHHHHHhHhhhcCCcchhhHHHHHHHHhhCCC
Q 034027 65 KDLHQKCTKEMDEYVGCLYYHTNEFDFCRKEQQAFEKTCPL 105 (106)
Q Consensus 65 ~~ik~~C~~ef~~y~~CLd~~n~~~~~CRk~Q~~fd~~~p~ 105 (106)
+.=.++|..-++.|+.||+.++.+...|.+....|+..||.
T Consensus 17 ~nq~k~Cw~~y~~y~~Cl~~~ged~~~C~~~~~~~es~Cp~ 57 (75)
T cd00926 17 QNQTKHCWQRYVDYHRCIKAKGEDASPCKKFRRVYESLCPQ 57 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhCcH
Confidence 34468999999999999999999999999999999999995
No 4
>PF02297 COX6B: Cytochrome oxidase c subunit VIb; InterPro: IPR003213 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex that is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptide subunits. One of these subunits is the potentially haem-binding subunit, VIb, which is encoded in the nucleus []. ; GO: 0004129 cytochrome-c oxidase activity, 0005739 mitochondrion; PDB: 1OCC_U 1OCR_U 2DYS_H 3ASO_H 3AG3_U 2EIL_H 2EIJ_U 3AG2_U 3ABM_U 2EIN_U ....
Probab=96.92 E-value=0.0011 Score=43.65 Aligned_cols=38 Identities=26% Similarity=0.642 Sum_probs=34.6
Q ss_pred HHHhHHHHHHHHhHhhhcCC---------cchhhHHHHHHHHhhCCC
Q 034027 68 HQKCTKEMDEYVGCLYYHTN---------EFDFCRKEQQAFEKTCPL 105 (106)
Q Consensus 68 k~~C~~ef~~y~~CLd~~n~---------~~~~CRk~Q~~fd~~~p~ 105 (106)
.++|.+..++|+.||+.++. ....|..+.+.|++.||.
T Consensus 9 r~~Cw~arD~y~~Cl~~~~~~~~~~~~~~~~~~C~~~~~~ye~~Cp~ 55 (76)
T PF02297_consen 9 RKKCWQARDDYFKCLDKNGEPDSEKEKKKDESACKYFRKNYESNCPS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------TTTTGGGGHHHHHHHHHHS-H
T ss_pred HHHHHHHHHHHHHHHHHcCccccccccccchhhhHHHHHHHHHhCcH
Confidence 57899999999999999998 789999999999999994
No 5
>KOG3057 consensus Cytochrome c oxidase, subunit VIb/COX12 [Energy production and conversion]
Probab=95.62 E-value=0.021 Score=41.10 Aligned_cols=39 Identities=21% Similarity=0.529 Sum_probs=36.9
Q ss_pred HHHHhHHHHHHHHhHhhhcCCcchhhHHHHHHHHhhCCC
Q 034027 67 LHQKCTKEMDEYVGCLYYHTNEFDFCRKEQQAFEKTCPL 105 (106)
Q Consensus 67 ik~~C~~ef~~y~~CLd~~n~~~~~CRk~Q~~fd~~~p~ 105 (106)
-.++|..-+..|+.|++.+..++..|-+-|+.|.+.||.
T Consensus 54 qtrhCf~~y~dyhrC~~~~geD~~~Ck~f~~~y~SlCP~ 92 (112)
T KOG3057|consen 54 QTRHCFQRYVDYHRCIKAKGEDANPCKKFQKVYRSLCPG 92 (112)
T ss_pred hhHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHhCcH
Confidence 367899999999999999999999999999999999995
No 6
>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.
Probab=93.74 E-value=0.11 Score=32.47 Aligned_cols=39 Identities=26% Similarity=0.556 Sum_probs=30.6
Q ss_pred HHHHHHhHHHHHHHHhHhhhcCC-cchhhHHHHHHHHhhC
Q 034027 65 KDLHQKCTKEMDEYVGCLYYHTN-EFDFCRKEQQAFEKTC 103 (106)
Q Consensus 65 ~~ik~~C~~ef~~y~~CLd~~n~-~~~~CRk~Q~~fd~~~ 103 (106)
..+...|.+++++|.+|...+.. -++.||++..++++|.
T Consensus 7 ~~~~~~C~~~i~~~~~C~~~~~~~~~~~C~~~~~~m~~Cl 46 (69)
T PF08583_consen 7 EEAHKKCADEIEAFAECHKDRTFKFVGKCREEKKAMNECL 46 (69)
T ss_pred HHHHHHhHHHHHHHHHHHhcchHHHHHhhhHHHHHHHHHH
Confidence 34568899999999999887443 5788999999888763
No 7
>PF10203 Pet191_N: Cytochrome c oxidase assembly protein PET191; InterPro: IPR018793 This entry represents a family of conserved proteins found from nematodes to humans. Cytochrome c oxidase assembly protein Pet191 carries six highly conserved cysteine residues. Pet191 is required for the assembly of active cytochrome c oxidase but does not form part of the final assembled complex [].
Probab=81.17 E-value=0.41 Score=31.30 Aligned_cols=48 Identities=19% Similarity=0.537 Sum_probs=37.9
Q ss_pred HHhhchhhhHhhhcccccC-------CChhhhHhhchhhhhhHHHHHHHHHHHhHHHHHHHHhHh
Q 034027 25 IGLRCQHENVEFLKCKQKD-------PNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCL 82 (106)
Q Consensus 25 ig~~C~~~n~~FMlCK~E~-------~dP~~CL~EGr~VT~Ca~~~l~~ik~~C~~ef~~y~~CL 82 (106)
+|+.|...-.++..|-.++ ..|+.||+++ ..+|-..|.....+|.+|-
T Consensus 1 m~~sC~~~~~~L~~Cl~~SdCv~~~~~t~~~Cl~~~----------~~~~p~eC~~lr~~f~eCK 55 (68)
T PF10203_consen 1 MSKSCKGIREALAECLQESDCVKKEKRTPKDCLKDP----------SDELPEECQQLRKAFFECK 55 (68)
T ss_pred CCchHHHHHHHHHHHHhhChhhccCCCCHHHHHcCC----------CCcCCHHHHHHHHHHHHHh
Confidence 3667888888888887765 5677777766 3567889999999999993
No 8
>KOG4624 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.84 E-value=3.5 Score=29.37 Aligned_cols=34 Identities=18% Similarity=0.485 Sum_probs=30.5
Q ss_pred HHhHHHHHHHHhHhhhcCC-cchhhHHHHHHHHhh
Q 034027 69 QKCTKEMDEYVGCLYYHTN-EFDFCRKEQQAFEKT 102 (106)
Q Consensus 69 ~~C~~ef~~y~~CLd~~n~-~~~~CRk~Q~~fd~~ 102 (106)
..|.+....|.+|-..+.. -+..|||+..+|+.|
T Consensus 31 ~~C~~~v~~~a~C~k~~~v~vv~TCrkq~~elk~C 65 (104)
T KOG4624|consen 31 EKCSEFVQDFADCAKASGVSVVPTCRKQNSELKEC 65 (104)
T ss_pred HHHHHHHHHHHHHHhcCCeeeehhhHHHHHHHHHH
Confidence 6799999999999998875 599999999999876
No 9
>KOG4695 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.02 E-value=3.8 Score=29.81 Aligned_cols=32 Identities=38% Similarity=0.590 Sum_probs=21.7
Q ss_pred HhHHHHHHHHhHhhhcCCcchhhHHHHHHHHh
Q 034027 70 KCTKEMDEYVGCLYYHTNEFDFCRKEQQAFEK 101 (106)
Q Consensus 70 ~C~~ef~~y~~CLd~~n~~~~~CRk~Q~~fd~ 101 (106)
+|..|+.....||.+|.-+-..|||+-.-|-.
T Consensus 47 tC~qEm~vlfaClK~nEF~d~~C~Kei~~f~d 78 (122)
T KOG4695|consen 47 TCIQEMSVLFACLKQNEFRDDACRKEIQGFLD 78 (122)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 56777777777777766666777776665544
No 10
>PF02320 UCR_hinge: Ubiquinol-cytochrome C reductase hinge protein; InterPro: IPR023184 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex []. The bc1 complex contains 11 subunits; 3 respiratory subunits (cytochrome B, cytochrome C1, Rieske protein), 2 core proteins and 6 low molecular weight proteins. This family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex. Proteins in this entry from an alpha-helical hairpin. This entry represents the structural domain found in these proteins.; PDB: 1BCC_H 1SQP_H 1SQB_H 1BE3_H 2A06_U 1L0L_H 2BCC_H 2FYU_H 1PPJ_U 2YBB_H ....
Probab=72.53 E-value=3 Score=26.96 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=24.4
Q ss_pred hHhhchhhhhhHHHHHHHH--HHHhHHHHHHHHhHhhh
Q 034027 49 CLDKGRQVTRCVLGLLKDL--HQKCTKEMDEYVGCLYY 84 (106)
Q Consensus 49 CL~EGr~VT~Ca~~~l~~i--k~~C~~ef~~y~~CLd~ 84 (106)
|.+.-...-.|+-.+=..- +.+|.+||-.||+|+|.
T Consensus 17 C~~~~~~y~~C~eRV~~~~~~~e~C~ee~fd~~hCvD~ 54 (65)
T PF02320_consen 17 CAKLKHHYDECVERVNSRSETKEDCVEEYFDLVHCVDH 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSSG-SHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 4444455556665555443 58899999999999986
No 11
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=69.65 E-value=1.6 Score=24.00 Aligned_cols=31 Identities=23% Similarity=0.574 Sum_probs=21.4
Q ss_pred chhhhHhhhcccccCC-ChhhhHhhchhhhhh
Q 034027 29 CQHENVEFLKCKQKDP-NPEKCLDKGRQVTRC 59 (106)
Q Consensus 29 C~~~n~~FMlCK~E~~-dP~~CL~EGr~VT~C 59 (106)
|..+..+||.|-.+++ |..+|-++-++.-.|
T Consensus 1 C~~e~~~~~~Cl~~n~~~~~~C~~~~~~~~~C 32 (35)
T PF06747_consen 1 CAEEMKAYLACLKENNFDWSKCRKEFKAYKEC 32 (35)
T ss_dssp THHHHHHHHHHHHCH-SSTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCcHHhhHHHHHHHHHH
Confidence 6778888999988874 477776665555554
No 12
>KOG4763 consensus Ubiquinol-cytochrome c reductase hinge protein [Energy production and conversion]
Probab=68.20 E-value=4.1 Score=27.52 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=15.4
Q ss_pred HHHhHHHHHHHHhHhhh
Q 034027 68 HQKCTKEMDEYVGCLYY 84 (106)
Q Consensus 68 k~~C~~ef~~y~~CLd~ 84 (106)
.++|..|+-.||+|+|+
T Consensus 50 ee~Ct~e~fDy~h~~Dh 66 (77)
T KOG4763|consen 50 EEHCTGEYFDYWHCLDH 66 (77)
T ss_pred chhhHHHHHHHHHHHHH
Confidence 56899999999999996
No 13
>KOG4090 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.20 E-value=7.9 Score=29.39 Aligned_cols=39 Identities=13% Similarity=0.426 Sum_probs=31.6
Q ss_pred HHHHHHHHhHHHHHHHHhHhhhcCCcchhhHHHHHHHHh
Q 034027 63 LLKDLHQKCTKEMDEYVGCLYYHTNEFDFCRKEQQAFEK 101 (106)
Q Consensus 63 ~l~~ik~~C~~ef~~y~~CLd~~n~~~~~CRk~Q~~fd~ 101 (106)
.+.+....|.-|++.|.+|+.+++.++..|.---..|-.
T Consensus 110 q~~q~~~~C~~e~kqF~dCa~~~~~d~slC~~f~e~Lk~ 148 (157)
T KOG4090|consen 110 QPAQQQQPCFIEIKQFLDCAQNQGSDISLCEGYNEMLKQ 148 (157)
T ss_pred chhhhcCchHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 456678889999999999999999999999765555543
No 14
>PF08991 DUF1903: Domain of unknown function (DUF1903); InterPro: IPR009069 The mature-T-cell-proliferation (MTCP1) putative oncogene was identified for its involvement in t(X:14)(q28;q11)-associated T-cell leukaemia []. MTCP1 is alternatively spliced to produce two completely distinct proteins: the small mitochondrial protein, p8MTCP1, and the protein p13MTCP1, which shows strong homology to another oncogene product, p14TCL1. While p13MTCP1 expression appears to be restricted to mature T-cell proliferation with t(X,14) translocations, the mitochondrial p8MTCP1 is expressed at low levels in most human tissues, and is over-expressed in the proliferating T-cells. The biological function of p8MTCP1 is still unknown, but it appears to play a role in oncogenesis. The structure of p8MTCP1 reveals a disulphide-rich, irregular array of three helices [].; PDB: 2HP8_A 1EI0_A 1HP8_A.
Probab=65.83 E-value=7.8 Score=25.23 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=22.1
Q ss_pred HhHHHHHHHHhHhhhcCCcchhhHHHHHHHHhhC
Q 034027 70 KCTKEMDEYVGCLYYHTNEFDFCRKEQQAFEKTC 103 (106)
Q Consensus 70 ~C~~ef~~y~~CLd~~n~~~~~CRk~Q~~fd~~~ 103 (106)
.|.++=-+--.||..||.+.++|.+.=.+|-.+|
T Consensus 3 PC~~~Ac~iq~CL~~N~Yd~~kC~~~i~~l~~Cc 36 (67)
T PF08991_consen 3 PCQKEACAIQKCLQRNNYDESKCQDYIDALYECC 36 (67)
T ss_dssp TTHHHHHHHHHHHHHTTT-CCCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4566666666777777777777777666665554
No 15
>KOG4618 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.54 E-value=10 Score=25.46 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=17.7
Q ss_pred hHhhchhhhhhHHHHHHHHHHHhHHHHHHHHhHhhh
Q 034027 49 CLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYY 84 (106)
Q Consensus 49 CL~EGr~VT~Ca~~~l~~ik~~C~~ef~~y~~CLd~ 84 (106)
||.|..+-++|--+. .-=+.+|.+-|+.|-+|-..
T Consensus 24 Cl~es~aSfkCLeen-nyDRsKCq~yFd~YkeCKkf 58 (74)
T KOG4618|consen 24 CLLESSASFKCLEEN-NYDRSKCQDYFDVYKECKKF 58 (74)
T ss_pred HHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHH
Confidence 666666555553321 11144566666666666443
No 16
>PRK13687 hypothetical protein; Provisional
Probab=54.13 E-value=6.4 Score=27.13 Aligned_cols=20 Identities=30% Similarity=0.654 Sum_probs=18.2
Q ss_pred hhchhhhhhHHHHHHHHHHH
Q 034027 51 DKGRQVTRCVLGLLKDLHQK 70 (106)
Q Consensus 51 ~EGr~VT~Ca~~~l~~ik~~ 70 (106)
+||...+.|++.+|++||..
T Consensus 38 ReG~~l~dctl~vF~kLK~k 57 (85)
T PRK13687 38 REGWLLADCTLAVFKKLKRK 57 (85)
T ss_pred cCCcccCCCCHHHHHHHHhh
Confidence 68999999999999999864
No 17
>PF05676 NDUF_B7: NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7); InterPro: IPR008698 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase B18 subunit proteins from different eukaryotic organisms. Oxidative phosphorylation is the well-characterised process in which ATP, the principal carrier of chemical energy of individual cells, is produced due to a mitochondrial proton gradient formed by the transfer of electrons from NADH and FADH2 to molecular oxygen. The oxidative phosphorylation (OXPHOS) system is located in the mitochondrial inner membrane and consists of five multi-subunit enzyme complexes and two small electron carriers: coenzyme Q10 and cytochrome C. At least 70 structural proteins involved in the formation of the whole OXPHOS system are encoded by nuclear genes, whereas 13 structural proteins are encoded by the mitochondrial genome. Deficiency of NADH ubiquinone oxidoreductase, the first enzyme complex of the mitochondrial respiratory chain, is one of the most frequent causes of Homo sapiens mitochondrial encephalomyopathies [].; GO: 0003954 NADH dehydrogenase activity, 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=54.03 E-value=22 Score=23.12 Aligned_cols=59 Identities=17% Similarity=0.372 Sum_probs=45.0
Q ss_pred CCCCchHHHHHhhHH--HHhhchhhhHhhhcccccC-CChhhhHhhchhhhhhH-HHHHHHHH
Q 034027 10 DPIPSSAVLTASSKH--IGLRCQHENVEFLKCKQKD-PNPEKCLDKGRQVTRCV-LGLLKDLH 68 (106)
Q Consensus 10 ~~~~ssa~L~aaa~~--ig~~C~~~n~~FMlCK~E~-~dP~~CL~EGr~VT~Ca-~~~l~~ik 68 (106)
+.++|...+.++.-. .-.+|...--.|++|+.++ ..|-+|-.|-.+--.|- .+++..+|
T Consensus 1 ~m~aTqeEM~~a~lPl~~RDyCAh~Li~l~kCrr~~~p~~~~C~~erH~y~~C~y~dy~~Rmk 63 (66)
T PF05676_consen 1 EMIATQEEMEDAKLPLQYRDYCAHLLIPLNKCRRDNFPFPWKCEHERHEYEKCQYDDYVMRMK 63 (66)
T ss_pred CCCcCHHHHHHcCCChhhhhhHHHHHHHHHHHHHhCCCCcccCCcchhhHHHccHHHHHHHHH
Confidence 357788888887744 4467999999999999987 57889988888877773 35555554
No 18
>PF05676 NDUF_B7: NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7); InterPro: IPR008698 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase B18 subunit proteins from different eukaryotic organisms. Oxidative phosphorylation is the well-characterised process in which ATP, the principal carrier of chemical energy of individual cells, is produced due to a mitochondrial proton gradient formed by the transfer of electrons from NADH and FADH2 to molecular oxygen. The oxidative phosphorylation (OXPHOS) system is located in the mitochondrial inner membrane and consists of five multi-subunit enzyme complexes and two small electron carriers: coenzyme Q10 and cytochrome C. At least 70 structural proteins involved in the formation of the whole OXPHOS system are encoded by nuclear genes, whereas 13 structural proteins are encoded by the mitochondrial genome. Deficiency of NADH ubiquinone oxidoreductase, the first enzyme complex of the mitochondrial respiratory chain, is one of the most frequent causes of Homo sapiens mitochondrial encephalomyopathies [].; GO: 0003954 NADH dehydrogenase activity, 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=49.73 E-value=19 Score=23.42 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=31.4
Q ss_pred HHHHhHHHHHHHHhHhhhcCCcchhhHHHHHHHHhh
Q 034027 67 LHQKCTKEMDEYVGCLYYHTNEFDFCRKEQQAFEKT 102 (106)
Q Consensus 67 ik~~C~~ef~~y~~CLd~~n~~~~~CRk~Q~~fd~~ 102 (106)
-+..|..-+-.|-+|...+..-.++|..+.-++++|
T Consensus 18 ~RDyCAh~Li~l~kCrr~~~p~~~~C~~erH~y~~C 53 (66)
T PF05676_consen 18 YRDYCAHLLIPLNKCRRDNFPFPWKCEHERHEYEKC 53 (66)
T ss_pred hhhhHHHHHHHHHHHHHhCCCCcccCCcchhhHHHc
Confidence 356899999999999998888889999999888765
No 19
>PF07802 GCK: GCK domain; InterPro: IPR012891 This domain is found in proteins carrying other domains known to be involved in intracellular signalling pathways (such as IPR001806 from INTERPRO) indicating that it might also be involved in these pathways. It has 4 highly conserved cysteine residues, suggesting that it can bind zinc ions. Moreover, it is found repeated in some members of this family (such as Q9LMF3 from SWISSPROT); this may indicate that these domains are able to interact with one another, raising the possibility that this domain mediates heterodimerisation.
Probab=46.82 E-value=31 Score=23.08 Aligned_cols=33 Identities=15% Similarity=0.400 Sum_probs=18.7
Q ss_pred HhHHHHHHHHhHhhh---cC--CcchhhHHHHHHHHhh
Q 034027 70 KCTKEMDEYVGCLYY---HT--NEFDFCRKEQQAFEKT 102 (106)
Q Consensus 70 ~C~~ef~~y~~CLd~---~n--~~~~~CRk~Q~~fd~~ 102 (106)
-|.+.|.++-.|.|. ++ ....+|+..-..|.+|
T Consensus 13 ~Cke~F~awe~C~~ea~~~~~~d~v~kC~e~~~~L~kC 50 (76)
T PF07802_consen 13 GCKESFTAWEDCVDEAEKNKEEDFVEKCFEATAALRKC 50 (76)
T ss_pred ChhHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 466666666666642 12 2356666666665554
No 20
>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.
Probab=46.14 E-value=52 Score=20.07 Aligned_cols=40 Identities=23% Similarity=0.427 Sum_probs=22.6
Q ss_pred hhchhhhHhhhcccccCCChhhhHhhchhhhhhHHHHHHHHHHHhHHHHHHHHhHhhhcC
Q 034027 27 LRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYYHT 86 (106)
Q Consensus 27 ~~C~~~n~~FMlCK~E~~dP~~CL~EGr~VT~Ca~~~l~~ik~~C~~ef~~y~~CLd~~n 86 (106)
..|.++..+|+.|-.+ ..-.+-..|.++..+...||..+.
T Consensus 11 ~~C~~~i~~~~~C~~~--------------------~~~~~~~~C~~~~~~m~~Cl~~~~ 50 (69)
T PF08583_consen 11 KKCADEIEAFAECHKD--------------------RTFKFVGKCREEKKAMNECLKEER 50 (69)
T ss_pred HHhHHHHHHHHHHHhc--------------------chHHHHHhhhHHHHHHHHHHHHHH
Confidence 5666666666666554 333344456666666666665544
No 21
>PF09857 DUF2084: Uncharacterized protein conserved in bacteria (DUF2084); InterPro: IPR018654 This domain is found in various hypothetical bacterial proteins that have no known function.
Probab=44.84 E-value=8.6 Score=26.51 Aligned_cols=20 Identities=25% Similarity=0.660 Sum_probs=18.1
Q ss_pred hhchhhhhhHHHHHHHHHHH
Q 034027 51 DKGRQVTRCVLGLLKDLHQK 70 (106)
Q Consensus 51 ~EGr~VT~Ca~~~l~~ik~~ 70 (106)
+||.-.+.|++.+|++||..
T Consensus 38 ReG~~l~dctl~vF~kLK~k 57 (85)
T PF09857_consen 38 REGWLLSDCTLAVFRKLKRK 57 (85)
T ss_pred cCCeeeCCCCHHHHHHHhhc
Confidence 68999999999999999864
No 22
>KOG3477 consensus Putative cytochrome c oxidase, subunit COX19 [Energy production and conversion]
Probab=43.97 E-value=26 Score=24.61 Aligned_cols=30 Identities=37% Similarity=0.786 Sum_probs=19.0
Q ss_pred HhHHHHHHHHhHhhhcCCcchhhHHHHHHH
Q 034027 70 KCTKEMDEYVGCLYYHTNEFDFCRKEQQAF 99 (106)
Q Consensus 70 ~C~~ef~~y~~CLd~~n~~~~~CRk~Q~~f 99 (106)
.|..++.+|..||.-.-+.-..||-.-+.+
T Consensus 29 eC~~em~eYl~Cl~~k~e~~~eCR~laK~Y 58 (97)
T KOG3477|consen 29 ECTAEMKEYLGCLKSKAENSEECRLLAKKY 58 (97)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 466777777777766555566666555444
No 23
>cd00926 Cyt_c_Oxidase_VIb Cytochrome c oxidase subunit VIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIb is one of three mammalian subunits that lacks a transmembrane region. It is located on the cytosolic side of the membrane and helps form the dimer interface with the corresponding subunit on the other monomer complex.
Probab=43.55 E-value=32 Score=22.64 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=34.2
Q ss_pred HhhchhhhHhhhcccccC-CChhhhHhhchhhhhhHHHHHHHHHHHhHHHHHHHHhHh
Q 034027 26 GLRCQHENVEFLKCKQKD-PNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCL 82 (106)
Q Consensus 26 g~~C~~~n~~FMlCK~E~-~dP~~CL~EGr~VT~Ca~~~l~~ik~~C~~ef~~y~~CL 82 (106)
.+.|-..-++|-.|..++ .|...| ..+.+...+.|+.++-+||+=-
T Consensus 20 ~k~Cw~~y~~y~~Cl~~~ged~~~C-----------~~~~~~~es~Cp~~Wve~w~ek 66 (75)
T cd00926 20 TKHCWQRYVDYHRCIKAKGEDASPC-----------KKFRRVYESLCPQEWLEKWDEQ 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHH-----------HHHHHHHHHhCcHHHHHHHHHH
Confidence 467888889999998766 333334 3466777899999999999743
No 24
>COG3811 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.38 E-value=18 Score=24.82 Aligned_cols=23 Identities=26% Similarity=0.728 Sum_probs=19.2
Q ss_pred hhH-hhchhhhhhHHHHHHHHHHH
Q 034027 48 KCL-DKGRQVTRCVLGLLKDLHQK 70 (106)
Q Consensus 48 ~CL-~EGr~VT~Ca~~~l~~ik~~ 70 (106)
.|+ ++|...+.|.+.+|++||.+
T Consensus 34 ~C~tRdGw~l~dctlavF~kLKrK 57 (85)
T COG3811 34 ECYTRDGWLLPDCTLAVFRKLKRK 57 (85)
T ss_pred EEecccccccCCccHHHHHHHHhc
Confidence 454 57999999999999999864
No 25
>PF02297 COX6B: Cytochrome oxidase c subunit VIb; InterPro: IPR003213 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex that is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptide subunits. One of these subunits is the potentially haem-binding subunit, VIb, which is encoded in the nucleus []. ; GO: 0004129 cytochrome-c oxidase activity, 0005739 mitochondrion; PDB: 1OCC_U 1OCR_U 2DYS_H 3ASO_H 3AG3_U 2EIL_H 2EIJ_U 3AG2_U 3ABM_U 2EIN_U ....
Probab=37.25 E-value=23 Score=22.93 Aligned_cols=53 Identities=19% Similarity=0.491 Sum_probs=30.6
Q ss_pred hhchhhhHhhhcccccCCChhhhHhhchhhhhhHHHHHHHHHHHhHHHHHHHHh
Q 034027 27 LRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVG 80 (106)
Q Consensus 27 ~~C~~~n~~FMlCK~E~~dP~~CL~EGr~VT~Ca~~~l~~ik~~C~~ef~~y~~ 80 (106)
..|-..-++|-.|-.+++.+-.--..+..-..| ..+-+...+.|+.++-+||+
T Consensus 10 ~~Cw~arD~y~~Cl~~~~~~~~~~~~~~~~~~C-~~~~~~ye~~Cp~sWv~~f~ 62 (76)
T PF02297_consen 10 KKCWQARDDYFKCLDKNGEPDSEKEKKKDESAC-KYFRKNYESNCPSSWVKYFD 62 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHH------TTTTGGGG-HHHHHHHHHHS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccccccccccchhhh-HHHHHHHHHhCcHHHHHHHH
Confidence 356677788888887763321111122222334 34566678889999999986
No 26
>PF05051 COX17: Cytochrome C oxidase copper chaperone (COX17); InterPro: IPR007745 Cox17p is essential for the assembly of functional cytochrome c oxidase (CCO) and for delivery of copper ions to the mitochondrion for insertion into the enzyme in Saccharomyces cerevisiae [].; GO: 0005507 copper ion binding, 0016531 copper chaperone activity, 0006825 copper ion transport, 0005758 mitochondrial intermembrane space; PDB: 1U97_A 1U96_A 1Z2G_A 2RNB_A 2RN9_A 2LGQ_A 2L0Y_B.
Probab=34.59 E-value=31 Score=21.45 Aligned_cols=17 Identities=12% Similarity=0.395 Sum_probs=14.5
Q ss_pred HhHHHHHHHHhHhhhcC
Q 034027 70 KCTKEMDEYVGCLYYHT 86 (106)
Q Consensus 70 ~C~~ef~~y~~CLd~~n 86 (106)
+|.+.+.+|..||....
T Consensus 30 ~C~~~Ieahk~Cmr~~G 46 (49)
T PF05051_consen 30 DCKELIEAHKACMRGEG 46 (49)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 49999999999997643
No 27
>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]
Probab=31.79 E-value=25 Score=23.55 Aligned_cols=48 Identities=27% Similarity=0.704 Sum_probs=32.5
Q ss_pred HhhchhhhHhhhcccccC-------CChhhhHhhchhhhhhHHHHHHHHHHHhHHHHHHHHhHh
Q 034027 26 GLRCQHENVEFLKCKQKD-------PNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCL 82 (106)
Q Consensus 26 g~~C~~~n~~FMlCK~E~-------~dP~~CL~EGr~VT~Ca~~~l~~ik~~C~~ef~~y~~CL 82 (106)
|..|+..-.+--.|-.++ ..|+.||+--. +++|-..|...+++|.+|-
T Consensus 2 g~sC~~~r~alk~Cl~~S~Cv~v~~ks~reCldn~~---------~~~vPeeC~al~~af~dCK 56 (73)
T KOG4114|consen 2 GASCKDQRKALKICLLRSDCVMVERKSPRECLDNPE---------LKDVPEECIALMKAFLDCK 56 (73)
T ss_pred cccHHHHHHHHHHHHhcCcceeeecCCHHHHhcCCc---------cccCcHHHHHHHHHHHHHH
Confidence 455666666666665554 67888887532 2456677888888888883
No 28
>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].
Probab=29.25 E-value=60 Score=22.64 Aligned_cols=44 Identities=20% Similarity=0.464 Sum_probs=29.0
Q ss_pred HHHhhchhhhHhhhcccccCCChhhhHhhchhhhhhHHHHHHHHHHHhHHHHHHHHhHhhhcC
Q 034027 24 HIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYYHT 86 (106)
Q Consensus 24 ~ig~~C~~~n~~FMlCK~E~~dP~~CL~EGr~VT~Ca~~~l~~ik~~C~~ef~~y~~CLd~~n 86 (106)
.+.++|..+-.+||.|-.-.+ . ..=++.|..+++.|.+||-...
T Consensus 28 ~~~~RC~~FE~e~i~C~~~~G-----------~--------~r~kKeC~~e~EDy~EClh~~K 71 (96)
T PF10200_consen 28 KQPSRCHPFEKEWIECAEAYG-----------Q--------TRGKKECKLELEDYYECLHHTK 71 (96)
T ss_pred CCCCchHHHHHHHHHHHHHHc-----------c--------cchhhhchhHHhHHHHHHhhHH
Confidence 455667777777776632111 1 1126889999999999998654
No 29
>PF05254 UPF0203: Uncharacterised protein family (UPF0203); InterPro: IPR007918 This is a family of small highly conserved proteins. In Saccharomyces cerevisiae (Baker's yeast) the gene YKL053C-A (MDM35) O60200 from SWISSPROT is one of the genes essential for maintenance of normal mitochondrial distribution and morphology (MDM) []; wherease in Homo sapiens (Human), p53CSV, O43715 from SWISSPROT is a direct transcriptional target for p53 and appears to be a cell-survival mediator in response to genotoxic stress including low-levels of DNA damage. It is suggested that p53CSV modulates the apoptotic pathway through interaction with HSP70 and Apaf-1 thereby inhibiting activation of procaspase-3 and procaspase-9 [].
Probab=27.76 E-value=49 Score=21.47 Aligned_cols=37 Identities=16% Similarity=0.509 Sum_probs=26.2
Q ss_pred hHhhchhhhhhHHHHHHH-H------HHHhHHHHHHHHhHhhhc
Q 034027 49 CLDKGRQVTRCVLGLLKD-L------HQKCTKEMDEYVGCLYYH 85 (106)
Q Consensus 49 CL~EGr~VT~Ca~~~l~~-i------k~~C~~ef~~y~~CLd~~ 85 (106)
|-..-.+.-.|-...|.+ . ...|.++|..|-.|+...
T Consensus 9 C~~lK~~YD~CFn~WfsekfLkG~~~~~~C~~~~~~Y~~Cv~~a 52 (68)
T PF05254_consen 9 CTELKEKYDQCFNKWFSEKFLKGDSSDNECGELFKEYQQCVQKA 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHH
Confidence 555666666776666621 1 258999999999998763
No 30
>PLN03079 Uncharacterized protein At4g33100; Provisional
Probab=24.97 E-value=52 Score=22.92 Aligned_cols=18 Identities=33% Similarity=0.765 Sum_probs=15.5
Q ss_pred HHHhHHHHHHHHhHhhhc
Q 034027 68 HQKCTKEMDEYVGCLYYH 85 (106)
Q Consensus 68 k~~C~~ef~~y~~CLd~~ 85 (106)
+..|.++|..|-.||...
T Consensus 44 ~~eC~~~w~~Yq~Cv~~a 61 (91)
T PLN03079 44 KEDCVAEWHKYRACLSEH 61 (91)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 467999999999999764
No 31
>PF15194 TMEM191C: TMEM191C family
Probab=24.24 E-value=67 Score=23.27 Aligned_cols=30 Identities=27% Similarity=0.612 Sum_probs=25.3
Q ss_pred CChhhhHhhchhhhhhHHHHHHHH-HHHhHH
Q 034027 44 PNPEKCLDKGRQVTRCVLGLLKDL-HQKCTK 73 (106)
Q Consensus 44 ~dP~~CL~EGr~VT~Ca~~~l~~i-k~~C~~ 73 (106)
.+|+-|-.+-+.|..|+.++|.++ +..|-.
T Consensus 12 ~g~ep~ds~~~~vQdcagSLMEEvArAdce~ 42 (121)
T PF15194_consen 12 GGSEPCDSQPRRVQDCAGSLMEEVARADCEK 42 (121)
T ss_pred CCCCccCCCccchhhhHHHHHHHHHHHHHHH
Confidence 578889999999999999999999 444643
No 32
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=22.41 E-value=77 Score=21.90 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=21.9
Q ss_pred CCh-----hhhHhhchhhhhhHHHHHHHHH
Q 034027 44 PNP-----EKCLDKGRQVTRCVLGLLKDLH 68 (106)
Q Consensus 44 ~dP-----~~CL~EGr~VT~Ca~~~l~~ik 68 (106)
.|| +.|..-|..+-+|++++|+-+-
T Consensus 42 ~dP~~Ly~~lc~~~G~~~DpCvldvfr~av 71 (93)
T PF11731_consen 42 RDPEELYERLCALTGQRHDPCVLDVFRCAV 71 (93)
T ss_pred CCHHHHHHHHHHHcCCcCCcHHHHHHHHHH
Confidence 677 6799999999999999999764
No 33
>PF12165 DUF3594: Domain of unknown function (DUF3594); InterPro: IPR021998 This presumed domain is functionally uncharacterised.This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00628 from PFAM.
Probab=22.37 E-value=60 Score=24.17 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=14.1
Q ss_pred CchHHHHHhhHHHHhh
Q 034027 13 PSSAVLTASSKHIGLR 28 (106)
Q Consensus 13 ~ssa~L~aaa~~ig~~ 28 (106)
-|-+.|+|+|||+|++
T Consensus 88 HsDsWLlsvAfy~gar 103 (137)
T PF12165_consen 88 HSDSWLLSVAFYFGAR 103 (137)
T ss_pred hccHHHHHHHHHHHHh
Confidence 3678999999999997
Done!