Query 034027
Match_columns 106
No_of_seqs 106 out of 151
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 15:07:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034027.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034027hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54h_ a.51.1.1 (H:) Cytochro 79.7 1.5 0.00011 27.3 4.5 38 68-105 20-60 (79)
2 d1ppjh_ f.28.1.1 (H:) Non-heme 54.0 1.6 0.00012 26.0 0.5 17 68-84 39-55 (66)
3 d1mcvi_ g.3.2.1 (I:) Trypsin i 35.6 3.2 0.00023 20.8 -0.2 10 34-43 4-13 (28)
4 d3cx5f1 f.28.1.1 (F:74-147) No 35.4 13 0.00091 22.3 2.5 16 69-84 48-63 (74)
5 d1u97a_ a.17.1.2 (A:) Cytochro 31.2 9.8 0.00072 22.8 1.5 38 48-86 25-62 (69)
6 d2hp8a_ a.17.1.1 (A:) p8-MTCP1 14.8 83 0.0061 18.3 3.3 13 70-82 27-39 (68)
7 d1juqa_ a.118.9.2 (A:) ADP-rib 10.6 1E+02 0.0076 19.4 3.2 61 10-79 15-78 (151)
8 d1p94a_ a.43.1.3 (A:) Plasmid 10.2 1E+02 0.0075 18.2 2.7 23 47-73 51-73 (76)
9 d1fd3a_ g.9.1.1 (A:) Beta-defe 9.8 46 0.0033 17.7 0.8 10 44-53 3-12 (41)
10 d1gmua2 d.58.38.1 (A:71-138) U 9.6 86 0.0063 17.9 2.2 16 13-28 10-25 (68)
No 1
>d1v54h_ a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow (Bos taurus) [TaxId: 9913]}
Probab=79.66 E-value=1.5 Score=27.31 Aligned_cols=38 Identities=13% Similarity=0.547 Sum_probs=33.8
Q ss_pred HHHhHHHHHHHHhH---hhhcCCcchhhHHHHHHHHhhCCC
Q 034027 68 HQKCTKEMDEYVGC---LYYHTNEFDFCRKEQQAFEKTCPL 105 (106)
Q Consensus 68 k~~C~~ef~~y~~C---Ld~~n~~~~~CRk~Q~~fd~~~p~ 105 (106)
.++|..-+..|-.| |.....++..|..-...+.+.||+
T Consensus 20 TrhC~~~Y~dyhrC~K~~~~kGed~~~C~~f~~~y~sLCP~ 60 (79)
T d1v54h_ 20 TRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPI 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHHHSCH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhCCH
Confidence 46899999999999 666778999999999999999995
No 2
>d1ppjh_ f.28.1.1 (H:) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=54.00 E-value=1.6 Score=25.99 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=15.2
Q ss_pred HHHhHHHHHHHHhHhhh
Q 034027 68 HQKCTKEMDEYVGCLYY 84 (106)
Q Consensus 68 k~~C~~ef~~y~~CLd~ 84 (106)
+++|.+||-.||.|+|.
T Consensus 39 ~E~C~eE~fd~~hc~D~ 55 (66)
T d1ppjh_ 39 EEDCTEELLDFLHARDH 55 (66)
T ss_dssp SCCSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 46899999999999986
No 3
>d1mcvi_ g.3.2.1 (I:) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=35.65 E-value=3.2 Score=20.84 Aligned_cols=10 Identities=40% Similarity=1.145 Sum_probs=8.2
Q ss_pred HhhhcccccC
Q 034027 34 VEFLKCKQKD 43 (106)
Q Consensus 34 ~~FMlCK~E~ 43 (106)
.+||+||+..
T Consensus 4 leym~c~~ds 13 (28)
T d1mcvi_ 4 LEYMRCKQDS 13 (28)
T ss_dssp CCCCBCSSGG
T ss_pred chhhhccccc
Confidence 4799999875
No 4
>d3cx5f1 f.28.1.1 (F:74-147) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=35.44 E-value=13 Score=22.33 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=13.4
Q ss_pred HHhHHHHHHHHhHhhh
Q 034027 69 QKCTKEMDEYVGCLYY 84 (106)
Q Consensus 69 ~~C~~ef~~y~~CLd~ 84 (106)
..|.+||-.|+.|+|.
T Consensus 48 E~C~eE~fdl~hcvD~ 63 (74)
T d3cx5f1 48 EDCVEEFFHLQHYLDT 63 (74)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 5688889999999885
No 5
>d1u97a_ a.17.1.2 (A:) Cytochrome C oxidase copper chaperone, COX17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.22 E-value=9.8 Score=22.81 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=24.4
Q ss_pred hhHhhchhhhhhHHHHHHHHHHHhHHHHHHHHhHhhhcC
Q 034027 48 KCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYYHT 86 (106)
Q Consensus 48 ~CL~EGr~VT~Ca~~~l~~ik~~C~~ef~~y~~CLd~~n 86 (106)
.|..+-++=-.|.+.. .+=..+|.+.+.+|+.||-...
T Consensus 25 aCpetK~aRDeCil~~-ge~~~~C~~lIeahk~CMr~~G 62 (69)
T d1u97a_ 25 VCKPEKEERDTCILFN-GQDSEKCKEFIEKYKECMKGYG 62 (69)
T ss_dssp CCHHHHHHHHHHHHHT-CTTSTTSHHHHHHHHHHHHHHT
T ss_pred cCchhhhHhhHHHHhc-CCcHHHHHHHHHHHHHHHHHcC
Confidence 3555555555666522 1111459999999999998654
No 6
>d2hp8a_ a.17.1.1 (A:) p8-MTCP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.82 E-value=83 Score=18.34 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=6.9
Q ss_pred HhHHHHHHHHhHh
Q 034027 70 KCTKEMDEYVGCL 82 (106)
Q Consensus 70 ~C~~ef~~y~~CL 82 (106)
.|.+.+++..+|-
T Consensus 27 kC~~~i~~L~~CC 39 (68)
T d2hp8a_ 27 KCQAVIQELRKCC 39 (68)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
No 7
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.64 E-value=1e+02 Score=19.43 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=33.9
Q ss_pred CCCCchHHHHHhhHHHHhhchhhhHh---hhcccccCCChhhhHhhchhhhhhHHHHHHHHHHHhHHHHHHHH
Q 034027 10 DPIPSSAVLTASSKHIGLRCQHENVE---FLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYV 79 (106)
Q Consensus 10 ~~~~ssa~L~aaa~~ig~~C~~~n~~---FMlCK~E~~dP~~CL~EGr~VT~Ca~~~l~~ik~~C~~ef~~y~ 79 (106)
-..+.++..+.....|...=.. -.+ ..+-|..++||. |.-=|+.+|.-+-++|+..|...+
T Consensus 15 l~~~dw~~ileicD~In~~~~~-~k~a~rai~krl~~~~~~--------~~l~aL~LLe~~vkNCG~~F~~ev 78 (151)
T d1juqa_ 15 NRQEDWEYIIGFCDQINKELEG-PQIAVRLLAHKIQSPQEW--------EALQALTVLEACMKNCGRRFHNEV 78 (151)
T ss_dssp CSSCCHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHTCSSHH--------HHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHcCCCHH--------HHHHHHHHHHHHHHHccHHHHHHH
Confidence 3445556666555555433111 111 222333445663 222288999999999999886554
No 8
>d1p94a_ a.43.1.3 (A:) Plasmid partition protein ParG {Salmonella enterica [TaxId: 28901]}
Probab=10.22 E-value=1e+02 Score=18.25 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=15.5
Q ss_pred hhhHhhchhhhhhHHHHHHHHHHHhHH
Q 034027 47 EKCLDKGRQVTRCVLGLLKDLHQKCTK 73 (106)
Q Consensus 47 ~~CL~EGr~VT~Ca~~~l~~ik~~C~~ 73 (106)
.+|.+.|+.+|. +|.+|-.+.+.
T Consensus 51 ~AC~k~gtsitd----Vi~~Lvd~WL~ 73 (76)
T d1p94a_ 51 AACARKGTSITD----VVNQLVDNWLK 73 (76)
T ss_dssp HHHHHHTCCHHH----HHHHHHHHHHH
T ss_pred HHHHHcCCcHHH----HHHHHHHHHHh
Confidence 479999988874 66666555443
No 9
>d1fd3a_ g.9.1.1 (A:) Beta-defensin, BD {Human (Homo sapiens), HBD2 [TaxId: 9606]}
Probab=9.77 E-value=46 Score=17.73 Aligned_cols=10 Identities=40% Similarity=0.969 Sum_probs=7.8
Q ss_pred CChhhhHhhc
Q 034027 44 PNPEKCLDKG 53 (106)
Q Consensus 44 ~dP~~CL~EG 53 (106)
.||..|++-|
T Consensus 3 ~npvtC~rsg 12 (41)
T d1fd3a_ 3 GDPVTCLKSG 12 (41)
T ss_dssp BSHHHHHHTT
T ss_pred CCceeeeccC
Confidence 5788888876
No 10
>d1gmua2 d.58.38.1 (A:71-138) Urease metallochaperone UreE, C-terminal domain {Klebsiella aerogenes [TaxId: 28451]}
Probab=9.57 E-value=86 Score=17.86 Aligned_cols=16 Identities=19% Similarity=0.274 Sum_probs=12.3
Q ss_pred CchHHHHHhhHHHHhh
Q 034027 13 PSSAVLTASSKHIGLR 28 (106)
Q Consensus 13 ~ssa~L~aaa~~ig~~ 28 (106)
.+.-.|.-+|+|||.+
T Consensus 10 ~~~~~L~r~A~HLGNR 25 (68)
T d1gmua2 10 DDPFMLAKACYALGNR 25 (68)
T ss_dssp SCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCC
Confidence 3455688899999976
Done!