Query 034029
Match_columns 105
No_of_seqs 95 out of 97
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 15:09:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 90.9 0.71 2.4E-05 28.7 5.6 34 17-50 8-44 (54)
2 2jwa_A Receptor tyrosine-prote 75.7 5.4 0.00018 23.7 4.4 32 16-47 8-39 (44)
3 4ds7_E Spindle POLE BODY compo 67.4 2.1 7.2E-05 26.8 1.2 15 33-47 13-27 (55)
4 2knc_B Integrin beta-3; transm 67.2 5.6 0.00019 25.8 3.4 30 15-44 4-33 (79)
5 2l8s_A Integrin alpha-1; trans 64.0 15 0.0005 22.7 4.6 32 18-49 6-40 (54)
6 1afo_A Glycophorin A; integral 59.9 9.2 0.00031 22.5 3.0 23 23-45 14-36 (40)
7 2k1a_A Integrin alpha-IIB; sin 59.4 12 0.00041 21.9 3.5 31 17-47 6-39 (42)
8 2yew_B E1 envelope glycoprotei 54.4 4.4 0.00015 34.0 1.3 25 12-43 395-419 (427)
9 2jo1_A Phospholemman; FXYD1, N 53.7 18 0.00063 23.6 4.0 21 22-42 17-37 (72)
10 1zza_A Stannin, AG8_1; helix, 53.0 45 0.0015 22.3 5.9 27 16-45 8-35 (90)
11 2vpz_C Hypothetical membrane s 51.8 16 0.00056 27.2 4.1 24 10-33 139-162 (253)
12 2lk9_A Bone marrow stromal ant 50.7 17 0.00057 20.8 3.0 25 22-46 5-29 (35)
13 2k9j_B Integrin beta-3; transm 49.1 33 0.0011 19.7 4.3 26 16-41 4-29 (43)
14 1rkl_A Dolichyl-diphosphooligo 44.9 18 0.00062 20.7 2.6 16 25-40 9-24 (36)
15 3arc_M Photosystem II reaction 44.9 10 0.00036 21.8 1.6 11 30-40 6-16 (36)
16 2lat_A Dolichyl-diphosphooligo 43.9 25 0.00087 20.1 3.1 18 23-40 7-24 (37)
17 3j0f_E E1 envelope glycoprotei 37.7 14 0.00049 31.1 1.9 22 20-44 411-432 (439)
18 2jo1_A Phospholemman; FXYD1, N 37.0 84 0.0029 20.4 5.1 29 21-49 21-49 (72)
19 2l2t_A Receptor tyrosine-prote 36.9 64 0.0022 18.9 4.8 30 16-45 6-36 (44)
20 2zxe_G FXYD10, phospholemman-l 36.7 25 0.00085 23.1 2.6 31 14-44 7-42 (74)
21 2jp3_A FXYD domain-containing 36.4 55 0.0019 21.0 4.1 34 13-46 4-42 (67)
22 2k9y_A Ephrin type-A receptor 35.0 35 0.0012 18.6 2.7 19 16-36 9-27 (41)
23 2qzu_A Putative sulfatase YIDJ 34.0 32 0.0011 27.1 3.3 17 73-89 27-43 (491)
24 2ks1_B Epidermal growth factor 33.8 30 0.001 20.3 2.4 25 17-41 8-33 (44)
25 3j0c_A E1 envelope glycoprotei 32.2 15 0.00053 30.9 1.2 20 21-43 412-431 (442)
26 1iij_A ERBB-2 receptor protein 31.7 15 0.0005 20.9 0.7 31 16-46 4-34 (35)
27 1cd1_A CD1, MCD1D.1; immunolog 26.7 15 0.0005 28.0 0.2 6 44-49 305-310 (315)
28 3u7d_B Protein HEG homolog 1; 24.8 22 0.00074 19.0 0.6 14 78-91 5-18 (26)
29 3arc_H Photosystem II reaction 23.8 80 0.0028 20.1 3.3 21 26-46 30-50 (65)
30 2kog_A Vesicle-associated memb 21.5 92 0.0032 21.2 3.5 27 15-43 93-119 (119)
31 2bsc_A F17A-G adhesin; bacteri 21.0 27 0.00092 26.2 0.7 15 73-87 78-92 (177)
32 3j1r_A Archaeal adhesion filam 20.3 1.1E+02 0.0038 16.3 2.9 17 27-43 7-23 (26)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=90.91 E-value=0.71 Score=28.66 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=21.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHH---HHhhcccCCC
Q 034029 17 SPIPYLFTSLALVLVLIAVALVLL---LCSYHKRYSN 50 (105)
Q Consensus 17 SPvPYLFgGLA~MlgLIAvALliL---aCSy~K~~s~ 50 (105)
+++|.-..-++++.||+-++|+++ -|-+.|+...
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 346666666677777777776655 5777776554
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=75.70 E-value=5.4 Score=23.74 Aligned_cols=32 Identities=13% Similarity=0.367 Sum_probs=22.9
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 034029 16 HSPIPYLFTSLALVLVLIAVALVLLLCSYHKR 47 (105)
Q Consensus 16 ~SPvPYLFgGLA~MlgLIAvALliLaCSy~K~ 47 (105)
.||+|-.-+|..-.+.++.++|+++.+-+||.
T Consensus 8 ~~~~~~Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 8 ASPLTSIISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHhheehhh
Confidence 48999888888886666666666666666553
No 3
>4ds7_E Spindle POLE BODY component 110; protein binding, metal binding, structura; 2.15A {Saccharomyces cerevisiae S288C}
Probab=67.36 E-value=2.1 Score=26.84 Aligned_cols=15 Identities=47% Similarity=0.667 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhccc
Q 034029 33 IAVALVLLLCSYHKR 47 (105)
Q Consensus 33 IAvALliLaCSy~K~ 47 (105)
=+|||+||+|-+-|.
T Consensus 13 KTVAL~VlaciRMk~ 27 (55)
T 4ds7_E 13 KTVALLVLACVRMKR 27 (55)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 379999999988664
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=67.18 E-value=5.6 Score=25.79 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=19.1
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034029 15 WHSPIPYLFTSLALVLVLIAVALVLLLCSY 44 (105)
Q Consensus 15 W~SPvPYLFgGLA~MlgLIAvALliLaCSy 44 (105)
+..|.+.+...++++.|++.+.|++|.|-+
T Consensus 4 Cp~~~n~~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 4 GSKGPDILVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp SCSSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666777777767776665543
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=64.02 E-value=15 Score=22.74 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=20.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH---HHhhcccCC
Q 034029 18 PIPYLFTSLALVLVLIAVALVLL---LCSYHKRYS 49 (105)
Q Consensus 18 PvPYLFgGLA~MlgLIAvALliL---aCSy~K~~s 49 (105)
++|.-..-++++.||+-++|+++ -|-+.|+..
T Consensus 6 ~vp~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 6 RVPLWVILLSAFAGLLLLMLLILALWKIGFFKRPL 40 (54)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 35555555666777777776665 577776554
No 6
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=59.93 E-value=9.2 Score=22.52 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 034029 23 FTSLALVLVLIAVALVLLLCSYH 45 (105)
Q Consensus 23 FgGLA~MlgLIAvALliLaCSy~ 45 (105)
..=|++|-|+|..-|+|--|.++
T Consensus 14 lII~~vmaGiIG~IllI~y~I~r 36 (40)
T 1afo_A 14 LIIFGVMAGVIGTILLISYGIRR 36 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999888765
No 7
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=59.45 E-value=12 Score=21.86 Aligned_cols=31 Identities=19% Similarity=0.436 Sum_probs=20.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHH---Hhhccc
Q 034029 17 SPIPYLFTSLALVLVLIAVALVLLL---CSYHKR 47 (105)
Q Consensus 17 SPvPYLFgGLA~MlgLIAvALliLa---CSy~K~ 47 (105)
.++|.-..-++++.||+-++|++++ |-..|+
T Consensus 6 ~~vp~wiIi~s~l~GLllL~li~~~LwK~GFFkR 39 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKR 39 (42)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 4566666677777788877777653 554443
No 8
>2yew_B E1 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=54.43 E-value=4.4 Score=34.04 Aligned_cols=25 Identities=12% Similarity=0.302 Sum_probs=17.2
Q ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 034029 12 IDLWHSPIPYLFTSLALVLVLIAVALVLLLCS 43 (105)
Q Consensus 12 ~~~W~SPvPYLFgGLA~MlgLIAvALliLaCS 43 (105)
-|.|-. |+||.+ .||+++|+||+|+
T Consensus 395 aw~W~~----l~gG~~---~~~~i~~~i~~~v 419 (427)
T 2yew_B 395 AWQWLA----TTSGPL---TILVVAIIVVVVV 419 (427)
T ss_dssp HHHHHG----GGHHHH---HHHHHHHHHHHHH
T ss_pred hHHHHH----HhcCch---HHHHHHHHHHHHh
Confidence 356653 899988 4566777777665
No 9
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=53.74 E-value=18 Score=23.61 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034029 22 LFTSLALVLVLIAVALVLLLC 42 (105)
Q Consensus 22 LFgGLA~MlgLIAvALliLaC 42 (105)
=.|||.+-..|.++.++||.+
T Consensus 17 RiGGLifA~vLfi~GI~iilS 37 (72)
T 2jo1_A 17 QIGGLVIAGILFILGILIVLS 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHc
Confidence 356666666666666666543
No 10
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=53.00 E-value=45 Score=22.28 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=13.3
Q ss_pred cCchHHHHHHHHHHHHHHHHH-HHHHHHhhc
Q 034029 16 HSPIPYLFTSLALVLVLIAVA-LVLLLCSYH 45 (105)
Q Consensus 16 ~SPvPYLFgGLA~MlgLIAvA-LliLaCSy~ 45 (105)
|||+- |-..+..-|||+| |-+|.|-.|
T Consensus 8 hsptt---gvvtv~viliavaalg~li~gcw 35 (90)
T 1zza_A 8 HSPTT---GVVTVIVILIAIAALGALILGCW 35 (90)
T ss_dssp TTTHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCc---ceEEehhHHHHHHHHHHHHHHHH
Confidence 56664 3334445566664 334444444
No 11
>2vpz_C Hypothetical membrane spanning protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_C* 2vpw_C* 2vpy_C*
Probab=51.80 E-value=16 Score=27.20 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=19.3
Q ss_pred CCcccccCchHHHHHHHHHHHHHH
Q 034029 10 APIDLWHSPIPYLFTSLALVLVLI 33 (105)
Q Consensus 10 ~~~~~W~SPvPYLFgGLA~MlgLI 33 (105)
..+..||||.|.+|..-|+..|.-
T Consensus 139 ~~~P~W~t~lp~~Fl~sa~~sG~a 162 (253)
T 2vpz_C 139 LNRPLWNGLMAGLFPLTALVLALG 162 (253)
T ss_dssp TTSTTSCTTHHHHHHHHHHHHHHH
T ss_pred cCcccccchHHHHHHHHHHHHHHH
Confidence 347789999999998888777764
No 12
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=50.69 E-value=17 Score=20.80 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 034029 22 LFTSLALVLVLIAVALVLLLCSYHK 46 (105)
Q Consensus 22 LFgGLA~MlgLIAvALliLaCSy~K 46 (105)
|..|.++.+-|+.++|.++.=-|-+
T Consensus 5 L~lg~Gvl~LLviV~LgV~LI~f~~ 29 (35)
T 2lk9_A 5 LLLGIGILVLLIIVILGVPLIIFTI 29 (35)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred eeecccHHHHHHHHHhcchheEEee
Confidence 4578888999999999888766654
No 13
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=49.07 E-value=33 Score=19.73 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=15.8
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHH
Q 034029 16 HSPIPYLFTSLALVLVLIAVALVLLL 41 (105)
Q Consensus 16 ~SPvPYLFgGLA~MlgLIAvALliLa 41 (105)
..|.+.+...++.+.|.+.+-|++|.
T Consensus 4 p~~~n~~~Iv~gvi~~ivliGl~lLl 29 (43)
T 2k9j_B 4 PKGPDILVVLLSVMGAILLIGLAALL 29 (43)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEeehHHHHHHHHHHHHHHHHH
Confidence 45667766666666666555555553
No 14
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=44.94 E-value=18 Score=20.65 Aligned_cols=16 Identities=25% Similarity=0.609 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 034029 25 SLALVLVLIAVALVLL 40 (105)
Q Consensus 25 GLA~MlgLIAvALliL 40 (105)
-||-.||+.++.|++|
T Consensus 9 ~lan~lG~~~~~LIvl 24 (36)
T 1rkl_A 9 SLAITFGIVMMTLIVI 24 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677888888888776
No 15
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=44.91 E-value=10 Score=21.77 Aligned_cols=11 Identities=64% Similarity=0.709 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 034029 30 LVLIAVALVLL 40 (105)
Q Consensus 30 lgLIAvALliL 40 (105)
+|+||.+|.|+
T Consensus 6 l~fiAt~Lfi~ 16 (36)
T 3arc_M 6 LGLIATALFVL 16 (36)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555444
No 16
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=43.86 E-value=25 Score=20.13 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034029 23 FTSLALVLVLIAVALVLL 40 (105)
Q Consensus 23 FgGLA~MlgLIAvALliL 40 (105)
..-||-.||+.++.|+||
T Consensus 7 L~~lan~lG~~~~~LIVl 24 (37)
T 2lat_A 7 LAIFANMLGVSLFLLVVL 24 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345778888888888877
No 17
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=37.72 E-value=14 Score=31.05 Aligned_cols=22 Identities=27% Similarity=0.538 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 034029 20 PYLFTSLALVLVLIAVALVLLLCSY 44 (105)
Q Consensus 20 PYLFgGLA~MlgLIAvALliLaCSy 44 (105)
=-|+||.+ .||+++|+||+|+-
T Consensus 411 ~~l~gG~~---~~~~i~~~i~~~v~ 432 (439)
T 3j0f_E 411 FALFGGAS---SLLIIGLMIFACSM 432 (439)
T ss_pred HHHhcccH---HHHHHHHHHHHHhh
Confidence 34677776 56777777777753
No 18
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=37.03 E-value=84 Score=20.42 Aligned_cols=29 Identities=10% Similarity=0.314 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 034029 21 YLFTSLALVLVLIAVALVLLLCSYHKRYS 49 (105)
Q Consensus 21 YLFgGLA~MlgLIAvALliLaCSy~K~~s 49 (105)
-+|+|+.+++|+|.+.-==.-|...+..+
T Consensus 21 LifA~vLfi~GI~iilS~KckCk~~qk~r 49 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRRCRCKFNQQQR 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred hHHHHHHHHHHHHHHHcCccccCCCCCCC
Confidence 47999999999988777778888877654
No 19
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=36.93 E-value=64 Score=18.90 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=14.9
Q ss_pred cCchHHHHHHHHH-HHHHHHHHHHHHHHhhc
Q 034029 16 HSPIPYLFTSLAL-VLVLIAVALVLLLCSYH 45 (105)
Q Consensus 16 ~SPvPYLFgGLA~-MlgLIAvALliLaCSy~ 45 (105)
.|++|-+-+|... ++++.+++|++..+-++
T Consensus 6 ~s~~~aIA~gVVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 6 HARTPLIAAGVIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEEeehHHHHHHHHHHHHHHHHhhh
Confidence 4667776666554 44444444444443333
No 20
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=36.69 E-value=25 Score=23.06 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=20.6
Q ss_pred cccCchHH-----HHHHHHHHHHHHHHHHHHHHHhh
Q 034029 14 LWHSPIPY-----LFTSLALVLVLIAVALVLLLCSY 44 (105)
Q Consensus 14 ~W~SPvPY-----LFgGLA~MlgLIAvALliLaCSy 44 (105)
.+.+|.=| =.|||.+-..|.++.++||.+-+
T Consensus 7 ~~~dpF~YDY~tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 7 DNDERFTYDYYRLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp TCGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCcccchHHheeccchhHHHHHHHHHHHHHcCc
Confidence 56666666 46788777777777777775433
No 21
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=36.37 E-value=55 Score=21.02 Aligned_cols=34 Identities=24% Similarity=0.153 Sum_probs=21.4
Q ss_pred ccccCchHH-----HHHHHHHHHHHHHHHHHHHHHhhcc
Q 034029 13 DLWHSPIPY-----LFTSLALVLVLIAVALVLLLCSYHK 46 (105)
Q Consensus 13 ~~W~SPvPY-----LFgGLA~MlgLIAvALliLaCSy~K 46 (105)
..|.+|.=| =.|||.+-..|.++.++||.+-+.|
T Consensus 4 ~~e~dpF~YDY~tLRigGLifA~vLfi~GI~iilS~kcr 42 (67)
T 2jp3_A 4 VDKGSPFYYDWESLQLGGLIFGGLLCIAGIALALSGKCK 42 (67)
T ss_dssp TSTTSGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred cccCCCcccchHHheecchhhHHHHHHHHHHHHHcCccc
Confidence 346666666 4677777777777777777544333
No 22
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=35.01 E-value=35 Score=18.65 Aligned_cols=19 Identities=11% Similarity=0.020 Sum_probs=8.9
Q ss_pred cCchHHHHHHHHHHHHHHHHH
Q 034029 16 HSPIPYLFTSLALVLVLIAVA 36 (105)
Q Consensus 16 ~SPvPYLFgGLA~MlgLIAvA 36 (105)
++.++-+-+|.+ .|++.++
T Consensus 9 ~~~~~~I~~~vv--~Gv~ll~ 27 (41)
T 2k9y_A 9 GSGNLAVIGGVA--VGVVLLL 27 (41)
T ss_dssp CCSSTHHHHHHH--HHHHHHH
T ss_pred CCceEEEEeehh--HHHHHHH
Confidence 444555544443 4444444
No 23
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides fragilis}
Probab=34.04 E-value=32 Score=27.08 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=12.6
Q ss_pred CCeEEEEecCCCCCccc
Q 034029 73 EPKVVVIMAGDDKPRYL 89 (105)
Q Consensus 73 e~kivVIMAGd~~PTfL 89 (105)
.|+||+||+=|-....|
T Consensus 27 ~PNIv~I~~Ddl~~~~l 43 (491)
T 2qzu_A 27 TPNLVFIMADQYRGDAI 43 (491)
T ss_dssp SCEEEEEEETTCCTTCC
T ss_pred CCCEEEEEeCCCCccch
Confidence 58999999966655444
No 24
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=33.82 E-value=30 Score=20.27 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=10.4
Q ss_pred CchHHHHHHHHH-HHHHHHHHHHHHH
Q 034029 17 SPIPYLFTSLAL-VLVLIAVALVLLL 41 (105)
Q Consensus 17 SPvPYLFgGLA~-MlgLIAvALliLa 41 (105)
|++|-+-+|... ++++.+++|++..
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~~~~~~ 33 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVALGIGL 33 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeehhHHHHHHHHHHHHHHH
Confidence 445554444433 3333333433333
No 25
>3j0c_A E1 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=32.18 E-value=15 Score=30.90 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 034029 21 YLFTSLALVLVLIAVALVLLLCS 43 (105)
Q Consensus 21 YLFgGLA~MlgLIAvALliLaCS 43 (105)
-|+||.++ ||+++|+||+|+
T Consensus 412 ~l~GG~~~---~~~i~~~~~~~v 431 (442)
T 3j0c_A 412 SLLGGSAV---IIIIGLVLATIV 431 (442)
T ss_dssp TTSSHHHH---HHHHHHHHHHHH
T ss_pred HHhcccHH---HHHHHHHHHHHH
Confidence 46777774 455555555543
No 26
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=31.70 E-value=15 Score=20.89 Aligned_cols=31 Identities=16% Similarity=0.421 Sum_probs=19.3
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034029 16 HSPIPYLFTSLALVLVLIAVALVLLLCSYHK 46 (105)
Q Consensus 16 ~SPvPYLFgGLA~MlgLIAvALliLaCSy~K 46 (105)
.||+|-+-.|....|.++-++|.+..+=+||
T Consensus 4 ~s~~~sIaagVvglll~vii~l~~~~~iRRr 34 (35)
T 1iij_A 4 ASPVTFIIATVVGVLLFLILVVVVGILIKRR 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTHHHHHC
T ss_pred CCCCcEeHHHHHHHHHHHHHHHHhheEEeec
Confidence 4678887777766555555555555555544
No 27
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=26.74 E-value=15 Score=27.99 Aligned_cols=6 Identities=17% Similarity=0.628 Sum_probs=0.0
Q ss_pred hcccCC
Q 034029 44 YHKRYS 49 (105)
Q Consensus 44 y~K~~s 49 (105)
+||..+
T Consensus 305 ~~~~~~ 310 (315)
T 1cd1_A 305 WRRRSA 310 (315)
T ss_dssp ------
T ss_pred eehhcC
Confidence 355443
No 28
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=24.79 E-value=22 Score=19.01 Aligned_cols=14 Identities=21% Similarity=0.662 Sum_probs=11.6
Q ss_pred EEecCCCCCcccee
Q 034029 78 VIMAGDDKPRYLAT 91 (105)
Q Consensus 78 VIMAGd~~PTfLAk 91 (105)
-|.+|+-+|+||..
T Consensus 5 ciypgqynpsfisd 18 (26)
T 3u7d_B 5 CIFPGQYNPSFISD 18 (26)
T ss_pred ccccCccCcccccC
Confidence 47899999999863
No 29
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=23.82 E-value=80 Score=20.14 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 034029 26 LALVLVLIAVALVLLLCSYHK 46 (105)
Q Consensus 26 LA~MlgLIAvALliLaCSy~K 46 (105)
.++.|+|+++.|+|+.=-|..
T Consensus 30 Mgv~m~Lf~vFl~iiLeIYNs 50 (65)
T 3arc_H 30 MAVFMGLFLVFLLIILEIYNS 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhCc
Confidence 467788999999988766644
No 30
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=21.50 E-value=92 Score=21.17 Aligned_cols=27 Identities=4% Similarity=0.365 Sum_probs=14.1
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 034029 15 WHSPIPYLFTSLALVLVLIAVALVLLLCS 43 (105)
Q Consensus 15 W~SPvPYLFgGLA~MlgLIAvALliLaCS 43 (105)
|+-=-++++.|+.+++. -+..++.+||
T Consensus 93 wkn~K~~iii~~iv~ii--i~iIi~~~c~ 119 (119)
T 2kog_A 93 WKNLKMMIILGVICAII--LIIIIVYFST 119 (119)
T ss_dssp CHHHHHHHHHHHHHHHH--HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH--HHHhhhheeC
Confidence 55555666655554433 3333455775
No 31
>2bsc_A F17A-G adhesin; bacterial adhesion, lectin, protein-sugar complex, fimbriae; HET: NAG; 1.4A {Escherichia coli} SCOP: b.2.3.5 PDB: 1o9v_A* 1zpl_A* 1o9w_A* 3f64_A* 3f6j_A* 1o9z_A 2bsb_A* 1zk5_A* 1oio_A* 3ffo_A* 2bs8_A* 2bs7_1*
Probab=21.00 E-value=27 Score=26.15 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=11.6
Q ss_pred CCeEEEEecCCCCCc
Q 034029 73 EPKVVVIMAGDDKPR 87 (105)
Q Consensus 73 e~kivVIMAGd~~PT 87 (105)
|.-=++||+||.+|+
T Consensus 78 dyiGili~~GDt~ys 92 (177)
T 2bsc_A 78 EEVGLLIWMGDTKYS 92 (177)
T ss_dssp SSEEEEEEEESSSGG
T ss_pred ceEEEEEEecCcccc
Confidence 444579999999876
No 32
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=20.34 E-value=1.1e+02 Score=16.27 Aligned_cols=17 Identities=53% Similarity=0.772 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 034029 27 ALVLVLIAVALVLLLCS 43 (105)
Q Consensus 27 A~MlgLIAvALliLaCS 43 (105)
.++|-+||++-.+|..-
T Consensus 7 ~~lLIviav~aaVllyl 23 (26)
T 3j1r_A 7 TLLLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46777888887777653
Done!