Query 034029
Match_columns 105
No_of_seqs 95 out of 97
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 15:09:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034029.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034029hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtm1 f.23.35.1 (M:1-36) Pho 49.2 3.9 0.00028 22.2 1.6 12 30-41 6-17 (36)
2 d2axth1 f.23.33.1 (H:2-65) Pho 30.0 25 0.0018 20.9 3.3 29 13-46 22-50 (64)
3 d1ijda_ f.3.1.1 (A:) Light-har 19.5 60 0.0044 18.0 3.3 20 19-38 16-35 (46)
4 d2heqa1 b.34.20.1 (A:1-71) Unc 18.2 20 0.0015 21.4 1.1 16 80-95 1-16 (71)
5 d1nkza_ f.3.1.1 (A:) Light-har 16.4 75 0.0055 18.0 3.3 20 19-38 16-35 (53)
6 d2ckca1 d.76.2.1 (A:2563-2622) 16.0 34 0.0025 19.8 1.7 16 72-87 3-25 (60)
7 d1ppjd2 f.23.11.1 (D:196-241) 15.6 72 0.0053 17.3 3.0 17 24-40 9-25 (46)
8 d2hsja1 c.23.10.3 (A:1-211) Un 13.9 44 0.0032 21.2 2.0 13 71-83 80-92 (211)
9 d2bs2c1 f.21.2.1 (C:1-254) Fum 13.1 1.7E+02 0.013 20.1 5.4 23 19-41 212-234 (254)
10 d2ckaa1 d.76.2.1 (A:2028-2085) 12.7 45 0.0033 19.1 1.6 18 70-87 3-27 (58)
No 1
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=49.18 E-value=3.9 Score=22.24 Aligned_cols=12 Identities=58% Similarity=0.700 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHH
Q 034029 30 LVLIAVALVLLL 41 (105)
Q Consensus 30 lgLIAvALliLa 41 (105)
||+||-||.||.
T Consensus 6 Lg~iAt~LFilv 17 (36)
T d2axtm1 6 LGLIATALFVLV 17 (36)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666666653
No 2
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=30.03 E-value=25 Score=20.93 Aligned_cols=29 Identities=28% Similarity=0.545 Sum_probs=20.5
Q ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034029 13 DLWHSPIPYLFTSLALVLVLIAVALVLLLCSYHK 46 (105)
Q Consensus 13 ~~W~SPvPYLFgGLA~MlgLIAvALliLaCSy~K 46 (105)
.-|-+ +|. .++.|+|+||.|+|+.=-|..
T Consensus 22 PGWGT-Tpl----Mgv~m~Lf~vfl~iiLeiYNs 50 (64)
T d2axth1 22 PGWGT-TPL----MAVFMGLFLVFLLIILEIYNS 50 (64)
T ss_dssp STTTT-HHH----HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCc-cHH----HHHHHHHHHHHHHHHHHHhcc
Confidence 55765 332 567789999999998766654
No 3
>d1ijda_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=19.48 E-value=60 Score=18.00 Aligned_cols=20 Identities=20% Similarity=0.587 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 034029 19 IPYLFTSLALVLVLIAVALV 38 (105)
Q Consensus 19 vPYLFgGLA~MlgLIAvALl 38 (105)
+|-++|+.|++-.++=+|+|
T Consensus 16 ~Pl~LgsVav~s~~VH~avl 35 (46)
T d1ijda_ 16 LPLMLGAVAITALLVHAAVL 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 45566666655555555544
No 4
>d2heqa1 b.34.20.1 (A:1-71) Uncharacterized protein YorP {Bacillus subtilis [TaxId: 1423]}
Probab=18.21 E-value=20 Score=21.37 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=13.5
Q ss_pred ecCCCCCccceeccCC
Q 034029 80 MAGDDKPRYLATQATI 95 (105)
Q Consensus 80 MAGd~~PTfLAkP~~s 95 (105)
||||.-|.|..-|+-.
T Consensus 1 magdplpkywsypvgl 16 (71)
T d2heqa1 1 MAGDPLPKYWSYPVGL 16 (71)
T ss_dssp CCCCCCCSSCCSCTTC
T ss_pred CCCCCCcccccccccE
Confidence 8999999998887653
No 5
>d1nkza_ f.3.1.1 (A:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=16.38 E-value=75 Score=18.04 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 034029 19 IPYLFTSLALVLVLIAVALV 38 (105)
Q Consensus 19 vPYLFgGLA~MlgLIAvALl 38 (105)
+|-++|..|++-.++=+|+|
T Consensus 16 ~Pl~LgsVav~s~~VH~avl 35 (53)
T d1nkza_ 16 IPALLGSVTVIAILVHLAIL 35 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 46666666655555555544
No 6
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.04 E-value=34 Score=19.82 Aligned_cols=16 Identities=38% Similarity=1.012 Sum_probs=9.7
Q ss_pred CCCeEEEE-------ecCCCCCc
Q 034029 72 PEPKVVVI-------MAGDDKPR 87 (105)
Q Consensus 72 ~e~kivVI-------MAGd~~PT 87 (105)
-|++|-|| +.|++.|+
T Consensus 3 ~d~rV~Vi~r~tGk~L~G~~AP~ 25 (60)
T d2ckca1 3 PDTRIPVINLEDGTRLVGEDAPK 25 (60)
T ss_dssp TTCBCCEEETTTTEEECTTSSCB
T ss_pred CCceEEEEECCCCCEecCcCCcC
Confidence 45555554 77887554
No 7
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.59 E-value=72 Score=17.29 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034029 24 TSLALVLVLIAVALVLL 40 (105)
Q Consensus 24 gGLA~MlgLIAvALliL 40 (105)
.|+-+|+.|+.++.+..
T Consensus 9 mG~Kv~~~l~~l~~l~y 25 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLVY 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46777777766555443
No 8
>d2hsja1 c.23.10.3 (A:1-211) Uncharacterized protein SP1450 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=13.90 E-value=44 Score=21.23 Aligned_cols=13 Identities=8% Similarity=0.261 Sum_probs=10.9
Q ss_pred CCCCeEEEEecCC
Q 034029 71 DPEPKVVVIMAGD 83 (105)
Q Consensus 71 ~~e~kivVIMAGd 83 (105)
...|++||||.|-
T Consensus 80 ~~~pd~vii~~G~ 92 (211)
T d2hsja1 80 GGAVDKIFLLIGT 92 (211)
T ss_dssp CSCCCEEEEECCH
T ss_pred cCCCCEEEEEeCc
Confidence 5678999999884
No 9
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=13.14 E-value=1.7e+02 Score=20.09 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 034029 19 IPYLFTSLALVLVLIAVALVLLL 41 (105)
Q Consensus 19 vPYLFgGLA~MlgLIAvALliLa 41 (105)
+-++..++.+.+|++++...+..
T Consensus 212 ~~~~l~~~~i~lG~~sl~~fv~~ 234 (254)
T d2bs2c1 212 LKTLMSAFLIVLGLLTFGAYVKK 234 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777888888777664
No 10
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.74 E-value=45 Score=19.14 Aligned_cols=18 Identities=44% Similarity=0.890 Sum_probs=12.2
Q ss_pred CCCCCeEEEE-------ecCCCCCc
Q 034029 70 LDPEPKVVVI-------MAGDDKPR 87 (105)
Q Consensus 70 ~~~e~kivVI-------MAGd~~PT 87 (105)
+|.|++|-|| +.|++.|+
T Consensus 3 l~~d~RV~Vi~r~tGk~L~G~~AP~ 27 (58)
T d2ckaa1 3 VDLETRIPVINKVDGTLLVGEDAPR 27 (58)
T ss_dssp CCSSSBCCEEETTTCCEECTTSSCB
T ss_pred CCCcccEEEEECCCCCCccccCCcC
Confidence 3556666665 78888775
Done!