BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034030
(105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase
Length = 324
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 30 NTLDYLRFSSITGVSVVVGYLSGIKPGLKGPSMVTGGLIGLMGGF 74
NTLDYL TG + + I GL + +T G I + GF
Sbjct: 84 NTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGF 128
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 30 NTLDYLRFSSITGVSVVVGYLSGIKPGLKGPSMVTGGLIGLMGGF 74
NTLDYL TG + + I GL + +T G I + GF
Sbjct: 87 NTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGF 131
>pdb|3ND0|A Chain A, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3ND0|B Chain B, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3Q17|A Chain A, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
pdb|3Q17|B Chain B, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
Length = 466
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 35 LRFSSITGVSVVVGYLS---GIKPGLKGPSMVTGGLIGLM-GGFMYAYQNS 81
L + + + +V G+LS G+ G +GP++ GG IG M GG+ A Q +
Sbjct: 118 LVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGGWFKATQEN 168
>pdb|2XMQ|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 12 QYPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIKPGLKGPSMVTG 65
QYP +D+ V L YL FS+I GV V G + L P V G
Sbjct: 80 QYPSLDQLADMIPCV-----LQYLNFSTIIGVGVGAGAYILARYALNHPDTVEG 128
>pdb|2XMR|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 12 QYPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIKPGLKGPSMVTG 65
QYP +D+ V L YL FS+I GV V G + L P V G
Sbjct: 80 QYPSLDQLADMIPCV-----LQYLNFSTIIGVGVGAGAYILARYALNHPDTVEG 128
>pdb|2XMS|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 12 QYPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIKPGLKGPSMVTG 65
QYP +D+ V L YL FS+I GV V G + L P V G
Sbjct: 80 QYPSLDQLADMIPCV-----LQYLNFSTIIGVGVGAGAYILARYALNHPDTVEG 128
>pdb|1Q9I|A Chain A, The A251c:s430c Double Mutant Of Flavocytochrome C3 From
Shewanella Frigidimarina
Length = 571
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 55 PGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 101
PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 527 PGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|2QMQ|A Chain A, Crystal Structure Of A N-Myc Downstream Regulated 2
Protein (Ndrg2, Syld, Ndr2, Ai182517, Au040374) From Mus
Musculus At 1.70 A Resolution
Length = 286
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 12 QYPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIKPGLKGPSMVTG 65
QYP +D+ + L YL FS+I GV V G + L P V G
Sbjct: 90 QYPSLDQLADMIPCI-----LQYLNFSTIIGVGVGAGAYILSRYALNHPDTVEG 138
>pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRX|B Chain B, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 55 PGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 101
PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 527 PGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRY|B Chain B, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 55 PGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 101
PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 527 PGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina
pdb|1Y0P|A Chain A, Flavocytochrome C3 With Mesaconate Bound
Length = 571
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 55 PGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 101
PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 527 PGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|2B7R|A Chain A, Structure Of E378d Mutant Flavocytochrome C3
Length = 571
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 55 PGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 101
PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 527 PGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|2B7S|A Chain A, R381k Mutant Of Flavocytochrome C3
Length = 571
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 55 PGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 101
PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 527 PGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavocytochrome C3
pdb|1M64|B Chain B, Crystal Structure Of Q363f Mutant Flavocytochrome C3
Length = 571
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 55 PGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 101
PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 527 PGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1P2E|A Chain A, H61a Mutant Of Flavocytochrome C3
Length = 571
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 55 PGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 101
PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 527 PGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 55 PGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 101
PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 527 PGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRZ|B Chain B, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 55 PGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 101
PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 527 PGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine
365 Mutated To Alanine
Length = 571
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 55 PGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 101
PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 527 PGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
pdb|1LJ1|B Chain B, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
Length = 571
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 55 PGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 101
PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 527 PGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1P2H|A Chain A, H61m Mutant Of Flavocytochrome C3
Length = 571
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 55 PGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 101
PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 527 PGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1KSU|B Chain B, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 55 PGLKGPSMVTGGLIGL--MGGFMYAYQNSAGRLMGFFPNEGEVARYQKR 101
PGL G VTGG+ G +GG + + GRL G E A+Y K+
Sbjct: 527 PGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAG-----EEAAKYSKK 570
>pdb|3U1K|A Chain A, Crystal Structure Of Human Pnpase
pdb|3U1K|C Chain C, Crystal Structure Of Human Pnpase
pdb|3U1K|B Chain B, Crystal Structure Of Human Pnpase
pdb|3U1K|D Chain D, Crystal Structure Of Human Pnpase
Length = 630
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 8 SEKPQYPVIDRNPPFTAVVGNFNTLDYLRFS-SITGVSVVVGYLSGIKPGLKGPSMVTGG 66
+EK YPVI R+ PFT V T + L + S + S G L+ + G+ S V G
Sbjct: 415 AEKALYPVIPRDFPFTIRV----TSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGV 470
Query: 67 LIGLM 71
IGL+
Sbjct: 471 AIGLV 475
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.140 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,367,400
Number of Sequences: 62578
Number of extensions: 129808
Number of successful extensions: 288
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 26
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)