Query 034030
Match_columns 105
No_of_seqs 102 out of 111
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 09:00:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02975 complex I subunit 100.0 8.4E-50 1.8E-54 275.6 9.1 97 4-100 1-97 (97)
2 PF10785 NADH-u_ox-rdase: NADH 100.0 2E-38 4.3E-43 214.2 8.6 81 10-90 1-86 (86)
3 PF09527 ATPase_gene1: Putativ 66.5 25 0.00054 20.9 5.5 38 42-80 15-53 (55)
4 PF12597 DUF3767: Protein of u 62.7 50 0.0011 23.3 6.7 24 14-37 11-34 (118)
5 COG5336 Uncharacterized protei 59.4 26 0.00057 25.2 4.7 57 17-77 34-92 (116)
6 PF08514 STAG: STAG domain ; 57.9 5.1 0.00011 28.0 0.9 22 9-30 2-23 (118)
7 PF07051 OCIA: Ovarian carcino 54.3 29 0.00063 24.7 4.3 35 48-83 64-98 (111)
8 PF03672 UPF0154: Uncharacteri 48.2 21 0.00046 23.1 2.6 35 62-96 3-54 (64)
9 PF10306 FLILHELTA: Hypothetic 47.7 25 0.00054 23.8 3.0 17 77-94 69-85 (86)
10 PRK01844 hypothetical protein; 46.0 24 0.00052 23.4 2.6 34 63-96 11-61 (72)
11 PF15110 TMEM141: TMEM141 prot 44.5 1.1E+02 0.0023 21.3 6.1 33 49-81 48-80 (94)
12 COG3763 Uncharacterized protei 42.5 29 0.00063 23.0 2.6 17 62-78 10-26 (71)
13 TIGR02230 ATPase_gene1 F0F1-AT 42.1 1.2E+02 0.0025 21.1 5.7 18 62-79 77-94 (100)
14 PF12112 DUF3579: Protein of u 42.0 9.6 0.00021 26.3 0.3 15 27-41 18-32 (92)
15 PF11317 DUF3119: Protein of u 40.1 55 0.0012 23.5 3.9 57 33-99 6-62 (116)
16 PF13807 GNVR: G-rich domain o 39.7 41 0.0009 21.5 3.0 20 62-81 62-81 (82)
17 PRK00523 hypothetical protein; 39.1 35 0.00076 22.6 2.6 34 63-96 12-62 (72)
18 PF12576 DUF3754: Protein of u 37.1 72 0.0016 22.8 4.2 25 27-51 57-81 (141)
19 PF11120 DUF2636: Protein of u 34.4 66 0.0014 20.7 3.2 24 29-52 1-25 (62)
20 PF11821 DUF3341: Protein of u 32.0 58 0.0013 24.5 3.1 28 55-82 49-76 (173)
21 PF11239 DUF3040: Protein of u 27.9 93 0.002 20.1 3.2 15 15-29 18-32 (82)
22 KOG4050 Glutamate transporter 26.4 2.5E+02 0.0053 21.7 5.6 65 25-89 68-156 (188)
23 PF07444 Ycf66_N: Ycf66 protei 25.7 2.1E+02 0.0046 19.2 5.8 36 44-79 19-54 (84)
24 TIGR03493 cellullose_BcsF cell 25.6 1.1E+02 0.0025 19.7 3.2 24 29-52 1-25 (62)
25 PF13829 DUF4191: Domain of un 24.7 2.3E+02 0.0049 22.4 5.4 17 62-78 52-68 (224)
26 COG4980 GvpP Gas vesicle prote 24.1 63 0.0014 23.1 2.0 19 62-80 11-29 (115)
27 TIGR03144 cytochr_II_ccsB cyto 22.8 2.3E+02 0.005 21.6 5.1 23 66-89 162-184 (243)
28 PRK15471 chain length determin 22.4 93 0.002 25.4 2.9 23 62-84 298-320 (325)
29 PTZ00234 variable surface prot 22.2 58 0.0013 27.9 1.8 38 61-100 367-420 (433)
30 PF05733 Tenui_N: Tenuivirus/P 22.1 4.2E+02 0.0091 21.3 7.8 73 10-82 149-226 (246)
31 COG4425 Predicted membrane pro 22.0 2E+02 0.0043 25.7 5.0 33 58-90 115-149 (588)
32 PLN02478 alternative oxidase 22.0 40 0.00086 28.1 0.7 30 63-92 217-249 (328)
33 PF07613 DUF1576: Protein of u 21.4 3.4E+02 0.0074 20.7 5.6 48 27-77 99-147 (183)
34 PF04147 Nop14: Nop14-like fam 20.3 1.6E+02 0.0034 27.1 4.2 17 70-86 590-606 (840)
No 1
>PLN02975 complex I subunit
Probab=100.00 E-value=8.4e-50 Score=275.55 Aligned_cols=97 Identities=88% Similarity=1.471 Sum_probs=94.4
Q ss_pred cccCCCCCCCCcccCCCCchhhhhccChhHHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 034030 4 DITASEKPQYPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIKPGLKGPSMVTGGLIGLMGGFMYAYQNSAG 83 (105)
Q Consensus 4 ~i~~~~~p~YPvId~dP~f~rVv~nfR~sDy~~~a~~ta~~~~~~y~~~~~~~~~~p~m~~~~~iG~~gGfl~ayqrS~~ 83 (105)
+|+..++|+|||||+||||+||++|||+|||++|+++|+++|+++|+.+.+|+.++|+|+++++||++||||+|||||++
T Consensus 1 ~~~~~~~P~YPlId~dP~f~rVv~yfr~sDY~~~a~~ta~s~~~~~~~~~~~~~~~~~mr~ag~iG~~gGf~~aYq~S~~ 80 (97)
T PLN02975 1 DITASDKPEYPVVDRNPTFTKVVGNFSALDYLRFATITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAG 80 (97)
T ss_pred CCcccCCCCCCccCCCCChHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHhhhHHhhhcccch
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCHHHHHHhhh
Q 034030 84 RLMGFFPNEGEVARYQK 100 (105)
Q Consensus 84 Rl~G~~EN~rEv~ry~~ 100 (105)
|||||+||+||||+|+.
T Consensus 81 Rf~G~~EN~rEV~~~~~ 97 (97)
T PLN02975 81 RLMGFFPNEGEVARYQK 97 (97)
T ss_pred hhcCCCCCHHHHHhccC
Confidence 99999999999999983
No 2
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=100.00 E-value=2e-38 Score=214.20 Aligned_cols=81 Identities=44% Similarity=0.772 Sum_probs=73.8
Q ss_pred CCCCCcccCCCCchhhhhccChhHHHHHHHHHHHHHHHHHHhc-cCCCC-C---CchHHHHHHHHHHHHHHHHHHhhccc
Q 034030 10 KPQYPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSG-IKPGL-K---GPSMVTGGLIGLMGGFMYAYQNSAGR 84 (105)
Q Consensus 10 ~p~YPvId~dP~f~rVv~nfR~sDy~~~a~~ta~~~~~~y~~~-~~~~~-~---~p~m~~~~~iG~~gGfl~ayqrS~~R 84 (105)
+|+|||||+||||+||++|||+|||++|+++|+++|+++|+++ ..+.. . +++|+++++||++||||+|||||++|
T Consensus 1 ~~~YPvId~dP~f~rVv~~~R~sDy~~~a~~ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS~~R 80 (86)
T PF10785_consen 1 KPPYPVIDSDPHFKRVVRYFRPSDYAIWAGATAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRSSLR 80 (86)
T ss_pred CCCCCccCCCCCHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5899999999999999999999999999999999999976654 44432 2 79999999999999999999999999
Q ss_pred ccccCC
Q 034030 85 LMGFFP 90 (105)
Q Consensus 85 l~G~~E 90 (105)
|+||+|
T Consensus 81 f~G~~e 86 (86)
T PF10785_consen 81 FMGFTE 86 (86)
T ss_pred hcCCCC
Confidence 999998
No 3
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=66.47 E-value=25 Score=20.93 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=23.0
Q ss_pred HHHHHHHHHhccCCCCCCch-HHHHHHHHHHHHHHHHHHh
Q 034030 42 GVSVVVGYLSGIKPGLKGPS-MVTGGLIGLMGGFMYAYQN 80 (105)
Q Consensus 42 a~~~~~~y~~~~~~~~~~p~-m~~~~~iG~~gGfl~ayqr 80 (105)
.++..+|++....-+ ..|. +.+..++|+.+|+...|+.
T Consensus 15 ~~g~~~G~~lD~~~~-t~p~~~~~g~llG~~~g~~~~~~~ 53 (55)
T PF09527_consen 15 LVGFFLGYWLDKWFG-TSPWFTLIGLLLGIAAGFYNVYRL 53 (55)
T ss_pred HHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555332212 2344 7777999999999887764
No 4
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=62.74 E-value=50 Score=23.30 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=20.0
Q ss_pred CcccCCCCchhhhhccChhHHHHH
Q 034030 14 PVIDRNPPFTAVVGNFNTLDYLRF 37 (105)
Q Consensus 14 PvId~dP~f~rVv~nfR~sDy~~~ 37 (105)
+--...|++++.++-++++|+..+
T Consensus 11 ~~~~~~~t~~~A~ksi~~~df~~~ 34 (118)
T PF12597_consen 11 GPPQERPTLSDAVKSIKLSDFRNV 34 (118)
T ss_pred CCCCCCCcHHHHHHhcCHHHHhHH
Confidence 556678999999999999998543
No 5
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.36 E-value=26 Score=25.17 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=35.2
Q ss_pred cCCCCchhhhhccChh-HHHHHHHHHHHHHHHHHHhccCCCCCCch-HHHHHHHHHHHHHHHH
Q 034030 17 DRNPPFTAVVGNFNTL-DYLRFSSITGVSVVVGYLSGIKPGLKGPS-MVTGGLIGLMGGFMYA 77 (105)
Q Consensus 17 d~dP~f~rVv~nfR~s-Dy~~~a~~ta~~~~~~y~~~~~~~~~~p~-m~~~~~iG~~gGfl~a 77 (105)
.++++.+....-|+.| |+ ...+.++..+||+.-.-. .-.|. |.+..+|||++|++-.
T Consensus 34 ~~a~s~k~~~~a~klssef---IsGilVGa~iG~llD~~a-gTsPwglIv~lllGf~AG~lnv 92 (116)
T COG5336 34 SSAESIKGYAQAFKLSSEF---ISGILVGAGIGWLLDKFA-GTSPWGLIVFLLLGFGAGVLNV 92 (116)
T ss_pred ccchhhhhhhhhHHHHHHH---HHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHH
Confidence 4567788888878765 55 333444555565432111 12343 8888999999999854
No 6
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=57.87 E-value=5.1 Score=28.04 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=17.7
Q ss_pred CCCCCCcccCCCCchhhhhccC
Q 034030 9 EKPQYPVIDRNPPFTAVVGNFN 30 (105)
Q Consensus 9 ~~p~YPvId~dP~f~rVv~nfR 30 (105)
+.++||+|.+.|+++....||.
T Consensus 2 ~~~~YPli~k~~~~k~Fr~~~~ 23 (118)
T PF08514_consen 2 DSSDYPLISKGKKFKKFRKNFC 23 (118)
T ss_pred CcccCCCcCCCcccHHHHHHHH
Confidence 3578999999999887777653
No 7
>PF07051 OCIA: Ovarian carcinoma immunoreactive antigen (OCIA); InterPro: IPR009764 This family consists of several ovarian carcinoma immunoreactive antigen (OCIA) and related eukaryotic sequences. The function of this family is unknown [,].
Probab=54.31 E-value=29 Score=24.68 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=23.4
Q ss_pred HHHhccCCCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 034030 48 GYLSGIKPGLKGPSMVTGGLIGLMGGFMYAYQNSAG 83 (105)
Q Consensus 48 ~y~~~~~~~~~~p~m~~~~~iG~~gGfl~ayqrS~~ 83 (105)
||+....+.+.-|-+.+++++|.+.|=+ .|++-|.
T Consensus 64 G~l~~~~rfG~~PKv~~ag~~Gy~~GK~-SY~~~C~ 98 (111)
T PF07051_consen 64 GYLKSSPRFGSLPKVAFAGILGYFVGKI-SYQGTCQ 98 (111)
T ss_pred CcccCCCccccccHHHHHHHHHHhhhHH-HHHHHHH
Confidence 4444444445567889999999998865 4555443
No 8
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=48.18 E-value=21 Score=23.07 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHH-----------------hhcccccccCCCHHHHH
Q 034030 62 MVTGGLIGLMGGFMYAYQ-----------------NSAGRLMGFFPNEGEVA 96 (105)
Q Consensus 62 m~~~~~iG~~gGfl~ayq-----------------rS~~Rl~G~~EN~rEv~ 96 (105)
..++.++|+++||.+|-. |...+=+|-++|+..++
T Consensus 3 iilali~G~~~Gff~ar~~~~k~l~~NPpine~mir~M~~QMG~kpSekqi~ 54 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARKYMEKQLKENPPINEKMIRAMMMQMGRKPSEKQIK 54 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCccHHHHH
Confidence 456788899999988743 33444556666666555
No 9
>PF10306 FLILHELTA: Hypothetical protein FLILHELTA; InterPro: IPR018811 This entry represents a family of conserved proteins found in fungi. They contain a characteristic FL(I)LHE(L)TA sequence motif, where the bracketed residues are I, L or V. Their function is not known.
Probab=47.67 E-value=25 Score=23.79 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=11.4
Q ss_pred HHHhhcccccccCCCHHH
Q 034030 77 AYQNSAGRLMGFFPNEGE 94 (105)
Q Consensus 77 ayqrS~~Rl~G~~EN~rE 94 (105)
-+.|...|+ ||..++.|
T Consensus 69 ~~~r~~~k~-G~~~~~~~ 85 (86)
T PF10306_consen 69 RFERWFRKK-GWFGFEKE 85 (86)
T ss_pred HHHHHHHHc-CCcccccc
Confidence 344666777 88877765
No 10
>PRK01844 hypothetical protein; Provisional
Probab=45.96 E-value=24 Score=23.40 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHH-----------------hhcccccccCCCHHHHH
Q 034030 63 VTGGLIGLMGGFMYAYQ-----------------NSAGRLMGFFPNEGEVA 96 (105)
Q Consensus 63 ~~~~~iG~~gGfl~ayq-----------------rS~~Rl~G~~EN~rEv~ 96 (105)
.++.++|+++||.+|-. |....=+|-++++..++
T Consensus 11 I~~li~G~~~Gff~ark~~~k~lk~NPpine~mir~Mm~QMGqkPSekki~ 61 (72)
T PRK01844 11 VVALVAGVALGFFIARKYMMNYLQKNPPINEQMLKMMMMQMGQKPSQKKIN 61 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCccHHHHH
Confidence 45688899999998743 34444456666666554
No 11
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=44.53 E-value=1.1e+02 Score=21.33 Aligned_cols=33 Identities=3% Similarity=-0.017 Sum_probs=26.2
Q ss_pred HHhccCCCCCCchHHHHHHHHHHHHHHHHHHhh
Q 034030 49 YLSGIKPGLKGPSMVTGGLIGLMGGFMYAYQNS 81 (105)
Q Consensus 49 y~~~~~~~~~~p~m~~~~~iG~~gGfl~ayqrS 81 (105)
++.+.-|+..++++.++.+.|..+++.....+|
T Consensus 48 ~iqrrlpYp~q~~~LVS~v~~sv~sY~vT~~et 80 (94)
T PF15110_consen 48 AIQRRLPYPFQWNILVSVVVASVASYQVTRVET 80 (94)
T ss_dssp HHHTTSSSSS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCchhHHHHHHhhhhhhhhhhHHH
Confidence 445555888999999999999999999888765
No 12
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.47 E-value=29 Score=22.96 Aligned_cols=17 Identities=47% Similarity=0.759 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034030 62 MVTGGLIGLMGGFMYAY 78 (105)
Q Consensus 62 m~~~~~iG~~gGfl~ay 78 (105)
.+++-++|+++||+++-
T Consensus 10 ivl~ll~G~~~G~fiar 26 (71)
T COG3763 10 IVLALLAGLIGGFFIAR 26 (71)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667889999988874
No 13
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=42.13 E-value=1.2e+02 Score=21.09 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034030 62 MVTGGLIGLMGGFMYAYQ 79 (105)
Q Consensus 62 m~~~~~iG~~gGfl~ayq 79 (105)
+.+..++|++.|+.-+|.
T Consensus 77 tl~~lllGv~~G~~n~w~ 94 (100)
T TIGR02230 77 TLTMLIVGVVIGCLNAWH 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344477788888777664
No 14
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=42.01 E-value=9.6 Score=26.28 Aligned_cols=15 Identities=13% Similarity=0.069 Sum_probs=8.2
Q ss_pred hccChhHHHHHHHHH
Q 034030 27 GNFNTLDYLRFSSIT 41 (105)
Q Consensus 27 ~nfR~sDy~~~a~~t 41 (105)
+=||||||+-=....
T Consensus 18 k~FRPSDWaERL~gv 32 (92)
T PF12112_consen 18 KTFRPSDWAERLCGV 32 (92)
T ss_dssp -B-S-TTHHHHHHHT
T ss_pred CCcCCccHHHHHHHH
Confidence 459999997654443
No 15
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=40.11 E-value=55 Score=23.46 Aligned_cols=57 Identities=25% Similarity=0.329 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHhhcccccccCCCHHHHHHhh
Q 034030 33 DYLRFSSITGVSVVVGYLSGIKPGLKGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQ 99 (105)
Q Consensus 33 Dy~~~a~~ta~~~~~~y~~~~~~~~~~p~m~~~~~iG~~gGfl~ayqrS~~Rl~G~~EN~rEv~ry~ 99 (105)
||..-.+..+++.++.+.. ...+.+..+|++|.|+ ++|-+..||. |+|.+-||.+-+
T Consensus 6 ~y~ipl~ll~~~~~l~~~~--------~~~w~~~~v~lfGlFL-~~Qt~~lR~~-F~~~~l~V~~~~ 62 (116)
T PF11317_consen 6 SYRIPLVLLGLGIALLFLQ--------NNPWPGLVVALFGLFL-LFQTTRLRLQ-FTDTALEVYRGE 62 (116)
T ss_pred CcchHHHHHHHHHHHHhcc--------ccchhHHHHHHHHHHH-HHhheeEEEE-EcCCceEEEEcC
Confidence 5656666666666666532 1234677788766654 7899999986 677766665433
No 16
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=39.73 E-value=41 Score=21.46 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 034030 62 MVTGGLIGLMGGFMYAYQNS 81 (105)
Q Consensus 62 m~~~~~iG~~gGfl~ayqrS 81 (105)
+.+++++|++.|..+++-|.
T Consensus 62 l~l~~~~Gl~lgi~~~~~re 81 (82)
T PF13807_consen 62 LALGLFLGLILGIGLAFLRE 81 (82)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44668889999988888764
No 17
>PRK00523 hypothetical protein; Provisional
Probab=39.12 E-value=35 Score=22.59 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHH-----------------hhcccccccCCCHHHHH
Q 034030 63 VTGGLIGLMGGFMYAYQ-----------------NSAGRLMGFFPNEGEVA 96 (105)
Q Consensus 63 ~~~~~iG~~gGfl~ayq-----------------rS~~Rl~G~~EN~rEv~ 96 (105)
.++.++|+++||.++-. |+...=+|-++++..++
T Consensus 12 i~~li~G~~~Gffiark~~~k~l~~NPpine~mir~M~~QMGqKPSekki~ 62 (72)
T PRK00523 12 IPLLIVGGIIGYFVSKKMFKKQIRENPPITENMIRAMYMQMGRKPSESQIK 62 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHhCCCccHHHHH
Confidence 45678899999988742 34445567777776665
No 18
>PF12576 DUF3754: Protein of unknown function (DUF3754); InterPro: IPR022227 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important.
Probab=37.08 E-value=72 Score=22.79 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=19.5
Q ss_pred hccChhHHHHHHHHHHHHHHHHHHh
Q 034030 27 GNFNTLDYLRFSSITGVSVVVGYLS 51 (105)
Q Consensus 27 ~nfR~sDy~~~a~~ta~~~~~~y~~ 51 (105)
=-+|+.|++.....+.+|.....+.
T Consensus 57 v~~~~~D~~~l~~~~vvg~v~~~~~ 81 (141)
T PF12576_consen 57 VRMRPFDRVKLGVSAVVGGVAVFVK 81 (141)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999988888887665543
No 19
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=34.45 E-value=66 Score=20.67 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=17.0
Q ss_pred cChhHHHHHHHHHH-HHHHHHHHhc
Q 034030 29 FNTLDYLRFSSITG-VSVVVGYLSG 52 (105)
Q Consensus 29 fR~sDy~~~a~~ta-~~~~~~y~~~ 52 (105)
++.||..+.++..| +.+|+||+.+
T Consensus 1 M~i~DiiQii~l~AlI~~pLGyl~~ 25 (62)
T PF11120_consen 1 MNISDIIQIIILCALIFFPLGYLAR 25 (62)
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46789998886655 4557887744
No 20
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=31.96 E-value=58 Score=24.48 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=17.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhhc
Q 034030 55 PGLKGPSMVTGGLIGLMGGFMYAYQNSA 82 (105)
Q Consensus 55 ~~~~~p~m~~~~~iG~~gGfl~ayqrS~ 82 (105)
+++....+..+|++|+++|+++.+.-+.
T Consensus 49 ~s~l~~~~l~~Gl~G~~~~~~l~~~t~~ 76 (173)
T PF11821_consen 49 RSRLPWIALVGGLTGFATAFLLQWYTNA 76 (173)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444556688888888877776553
No 21
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=27.87 E-value=93 Score=20.07 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=12.5
Q ss_pred cccCCCCchhhhhcc
Q 034030 15 VIDRNPPFTAVVGNF 29 (105)
Q Consensus 15 vId~dP~f~rVv~nf 29 (105)
+...||+|.+-++.-
T Consensus 18 L~~~DP~fa~~l~~~ 32 (82)
T PF11239_consen 18 LRADDPRFAARLRSG 32 (82)
T ss_pred HHhcCcHHHHHhccC
Confidence 567899999999885
No 22
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=26.40 E-value=2.5e+02 Score=21.70 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=36.9
Q ss_pred hhhccChhHHHHHHHHHHHHHHHHHHh-ccCCC-----CCCchHHHHHH-------HHHHHH-----------HHHHHHh
Q 034030 25 VVGNFNTLDYLRFSSITGVSVVVGYLS-GIKPG-----LKGPSMVTGGL-------IGLMGG-----------FMYAYQN 80 (105)
Q Consensus 25 Vv~nfR~sDy~~~a~~ta~~~~~~y~~-~~~~~-----~~~p~m~~~~~-------iG~~gG-----------fl~ayqr 80 (105)
...+++|+|...++..-++..+...|. ..+.. ...|...++++ |-++|| .++...-
T Consensus 68 l~~f~sp~~iilglivvvlvi~~liwa~~~~a~~krmr~~hp~~~l~gvllv~yfli~v~~~vlv~~F~il~Pv~L~lvH 147 (188)
T KOG4050|consen 68 LHGFISPQDIILGLIVVVLVIGTLIWAASADANIKRMRTDHPLVTLAGVLLVGYFLISVFGGVLVFAFAILFPVLLVLVH 147 (188)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999988887777666644332 11111 23344444332 222233 2345667
Q ss_pred hcccccccC
Q 034030 81 SAGRLMGFF 89 (105)
Q Consensus 81 S~~Rl~G~~ 89 (105)
.+.||.+.+
T Consensus 148 ASLRLRnik 156 (188)
T KOG4050|consen 148 ASLRLRNIK 156 (188)
T ss_pred HHHHHhhHH
Confidence 889999886
No 23
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=25.71 E-value=2.1e+02 Score=19.19 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=20.1
Q ss_pred HHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHH
Q 034030 44 SVVVGYLSGIKPGLKGPSMVTGGLIGLMGGFMYAYQ 79 (105)
Q Consensus 44 ~~~~~y~~~~~~~~~~p~m~~~~~iG~~gGfl~ayq 79 (105)
+..++.....+|...+..=.+.+.+|+..|..+-.|
T Consensus 19 ~~~Ly~lr~~~Pev~Rd~D~~fs~vgLl~g~IL~~~ 54 (84)
T PF07444_consen 19 GLALYFLRFFRPEVSRDYDIFFSSVGLLYGLILWFQ 54 (84)
T ss_pred HHHHHHHHHHCcchhhhhhHHHHHHHHHHHHHHHHH
Confidence 444444333566655555444466777777666555
No 24
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=25.57 E-value=1.1e+02 Score=19.67 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=17.1
Q ss_pred cChhHHHHHHHHHH-HHHHHHHHhc
Q 034030 29 FNTLDYLRFSSITG-VSVVVGYLSG 52 (105)
Q Consensus 29 fR~sDy~~~a~~ta-~~~~~~y~~~ 52 (105)
++.+|.++..+..| +.+|+||+.+
T Consensus 1 M~i~DilQli~lcALIf~pLgyl~~ 25 (62)
T TIGR03493 1 MNISDILQLVLLCALIFFPLGYLAR 25 (62)
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46789998876644 5568888754
No 25
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=24.72 E-value=2.3e+02 Score=22.42 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034030 62 MVTGGLIGLMGGFMYAY 78 (105)
Q Consensus 62 m~~~~~iG~~gGfl~ay 78 (105)
.++..++|++.|++.|.
T Consensus 52 ~~~~~i~gi~~g~l~am 68 (224)
T PF13829_consen 52 WWYWLIIGILLGLLAAM 68 (224)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556667776666654
No 26
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=24.13 E-value=63 Score=23.05 Aligned_cols=19 Identities=26% Similarity=0.719 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 034030 62 MVTGGLIGLMGGFMYAYQN 80 (105)
Q Consensus 62 m~~~~~iG~~gGfl~ayqr 80 (105)
+.++++||+.+++++|=.+
T Consensus 11 ~liGgiiGa~aaLL~AP~s 29 (115)
T COG4980 11 ILIGGIIGAAAALLFAPKS 29 (115)
T ss_pred HHHHHHHHHHHHHHhCCcc
Confidence 5677888998888887544
No 27
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=22.83 E-value=2.3e+02 Score=21.65 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhcccccccC
Q 034030 66 GLIGLMGGFMYAYQNSAGRLMGFF 89 (105)
Q Consensus 66 ~~iG~~gGfl~ayqrS~~Rl~G~~ 89 (105)
..+|++.|.+++++ +-+|.++|.
T Consensus 162 ltl~li~G~iWa~~-~wg~~w~wD 184 (243)
T TIGR03144 162 LTIGIISGAVWANE-AWGSYWSWD 184 (243)
T ss_pred HHHHHHHHHHHHHH-HhccCCCCC
Confidence 56788999999876 578898884
No 28
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=22.37 E-value=93 Score=25.41 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 034030 62 MVTGGLIGLMGGFMYAYQNSAGR 84 (105)
Q Consensus 62 m~~~~~iG~~gGfl~ayqrS~~R 84 (105)
+.+++++|++.|-.++..|...|
T Consensus 298 lil~~~lG~~lg~~~vL~r~~~r 320 (325)
T PRK15471 298 LVLAVLLGGMIGAGIVLGRNALR 320 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999998888766543
No 29
>PTZ00234 variable surface protein Vir12; Provisional
Probab=22.17 E-value=58 Score=27.89 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccccc----------------cCCCHHHHHHhhh
Q 034030 61 SMVTGGLIGLMGGFMYAYQNSAGRLMG----------------FFPNEGEVARYQK 100 (105)
Q Consensus 61 ~m~~~~~iG~~gGfl~ayqrS~~Rl~G----------------~~EN~rEv~ry~~ 100 (105)
...-+++||.+ |+|+|.|-+.||.- |-|.++|.+||+-
T Consensus 367 iim~~ailGti--fFlfyyn~ss~lks~~~krkrkk~~~ehnyyeeyEkel~~y~s 420 (433)
T PTZ00234 367 SIVGASIIGVL--VFLFFFFKSTPIRSQTNKGEKKKRKPQNNYYDEYEEELPRYES 420 (433)
T ss_pred HHHHHHHHHHH--HHhhhhhcccchhccccchhhcccchhhhhHHHHHHhhccccc
Confidence 33445677663 66677766666643 2266777778874
No 30
>PF05733 Tenui_N: Tenuivirus/Phlebovirus nucleocapsid protein; InterPro: IPR009522 This entry represents nucleocapsid proteins from the ssRNA viruses Tenuivirus and Phlebovirus [, ]. ; GO: 0003723 RNA binding, 0019013 viral nucleocapsid; PDB: 3OV9_A 3OUO_C 3LYF_C.
Probab=22.14 E-value=4.2e+02 Score=21.30 Aligned_cols=73 Identities=22% Similarity=0.259 Sum_probs=42.4
Q ss_pred CCCCCcccCCCCchhhhhccCh--hHHHHHHHHHHHHHHHHHHhccCCCCCCchHHH---HHHHHHHHHHHHHHHhhc
Q 034030 10 KPQYPVIDRNPPFTAVVGNFNT--LDYLRFSSITGVSVVVGYLSGIKPGLKGPSMVT---GGLIGLMGGFMYAYQNSA 82 (105)
Q Consensus 10 ~p~YPvId~dP~f~rVv~nfR~--sDy~~~a~~ta~~~~~~y~~~~~~~~~~p~m~~---~~~iG~~gGfl~ayqrS~ 82 (105)
.|+||.++-.|.|--+++-==| .|+.....-+=..+.+..-....|..++..-.+ .-++--+-++|.+--+|+
T Consensus 149 ~~~yp~~mm~psF~~Li~~tlp~~~~~~~~L~~Ah~L~~~~fSk~Inp~~rk~~~~l~~~~ei~~~~~~~m~aa~~ss 226 (246)
T PF05733_consen 149 SPDYPRWMMHPSFAGLIDPTLPNKKEYVNALFDAHSLFQVQFSKTINPSLRKKSKSLHTDIEIVKSFDGPMNAACNSS 226 (246)
T ss_dssp STT--GGGSSGGGGGG--TTS---HHHHHHHHHHHHHHHHHHHHHHSCCGCCS-HH-----HHHHHHHHHHHHHHTSS
T ss_pred CCCCcHHHhcccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhhhChhcccCccccchHHHHHHHHHHHHHHHHccc
Confidence 6899999999999999988877 898776665554444444344555443332211 134455667777666665
No 31
>COG4425 Predicted membrane protein [Function unknown]
Probab=21.99 E-value=2e+02 Score=25.72 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=21.1
Q ss_pred CCchHHHHHHHHHHHHHHH--HHHhhcccccccCC
Q 034030 58 KGPSMVTGGLIGLMGGFMY--AYQNSAGRLMGFFP 90 (105)
Q Consensus 58 ~~p~m~~~~~iG~~gGfl~--ayqrS~~Rl~G~~E 90 (105)
.++...++++++.++-... -.||+..+|||...
T Consensus 115 ~~~~~ai~~~~~a~~fl~qa~~wqntvr~Lmgl~~ 149 (588)
T COG4425 115 AKPAAAIVGAAGAVGFLVQAAVWQNTVRDLMGLEP 149 (588)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCCC
Confidence 4455555555555444433 37999999999753
No 32
>PLN02478 alternative oxidase
Probab=21.98 E-value=40 Score=28.15 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHH---hhcccccccCCCH
Q 034030 63 VTGGLIGLMGGFMYAYQ---NSAGRLMGFFPNE 92 (105)
Q Consensus 63 ~~~~~iG~~gGfl~ayq---rS~~Rl~G~~EN~ 92 (105)
++.+-..|...|.+.|. |-++||.||.|.+
T Consensus 217 v~~aQgvf~~~ff~~YLiSPr~aHRfvGYLEEE 249 (328)
T PLN02478 217 VIAVQGVFFNAYFLGYLISPKFAHRIVGYLEEE 249 (328)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444445555555554 6699999999854
No 33
>PF07613 DUF1576: Protein of unknown function (DUF1576); InterPro: IPR011470 This small family is found in several undescribed proteins. The alignment is distinguished by the frequent occurrence of conserved glycine and aromatic residues.
Probab=21.40 E-value=3.4e+02 Score=20.73 Aligned_cols=48 Identities=25% Similarity=0.330 Sum_probs=29.3
Q ss_pred hccChhHHHHHH-HHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHH
Q 034030 27 GNFNTLDYLRFS-SITGVSVVVGYLSGIKPGLKGPSMVTGGLIGLMGGFMYA 77 (105)
Q Consensus 27 ~nfR~sDy~~~a-~~ta~~~~~~y~~~~~~~~~~p~m~~~~~iG~~gGfl~a 77 (105)
+.-..+||...+ ..|+.+|..+++.-. .+. |...++-.+|.+.||+..
T Consensus 99 ~~~~~~~~il~aLFgT~LAPi~s~~~f~-~~~--~~~~lG~~~Gi~~Gfi~~ 147 (183)
T PF07613_consen 99 SKEPFSSYILIALFGTALAPIVSEFAFG-LGL--PLPILGILIGIIAGFIHP 147 (183)
T ss_pred cCCChHHHHHHHHHHhhHHHHHHHHHHh-cCC--chHHHHHHHHHHHHHHHH
Confidence 445667776655 568888888755321 111 111677777888888754
No 34
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=20.33 E-value=1.6e+02 Score=27.15 Aligned_cols=17 Identities=18% Similarity=0.473 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhhccccc
Q 034030 70 LMGGFMYAYQNSAGRLM 86 (105)
Q Consensus 70 ~~gGfl~ayqrS~~Rl~ 86 (105)
|+...++-||+-+.||.
T Consensus 590 fL~~l~l~y~~~SKR~v 606 (840)
T PF04147_consen 590 FLCTLLLEYQSLSKRFV 606 (840)
T ss_pred HHHHHHHHHHHHhcccC
Confidence 36788889999999984
Done!